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For: Napolitano F, Xu X, Gao X. Impact of computational approaches in the fight against COVID-19: an AI guided review of 17 000 studies. Brief Bioinform 2022;23:bbab456. [PMID: 34788381 PMCID: PMC8689952 DOI: 10.1093/bib/bbab456] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2021] [Revised: 09/08/2021] [Accepted: 10/07/2021] [Indexed: 12/15/2022]  Open
Number Cited by Other Article(s)
1
Xu X, Zhou J, Zhu C, Zhan Q, Li Z, Zhang R, Wang Y, Liao X, Gao X. Optimization of binding affinities in chemical space with generative pre-trained transformer and deep reinforcement learning. F1000Res 2024;12:757. [PMID: 38434657 PMCID: PMC10905145 DOI: 10.12688/f1000research.130936.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 02/15/2024] [Indexed: 03/05/2024]  Open
2
Bai J, Wang J. Modeling long COVID dynamics: Impact of underlying health conditions. J Theor Biol 2024;576:111669. [PMID: 37977479 PMCID: PMC10754059 DOI: 10.1016/j.jtbi.2023.111669] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 10/03/2023] [Accepted: 11/13/2023] [Indexed: 11/19/2023]
3
Derrick J, Patterson B, Bai J, Wang J. A Mechanistic Model for Long COVID Dynamics. MATHEMATICS (BASEL, SWITZERLAND) 2023;11:4541. [PMID: 38111916 PMCID: PMC10727852 DOI: 10.3390/math11214541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 12/20/2023]
4
Cheng Z, Lai Y, Jin K, Zhang M, Wang J. Modeling the XBB strain of SARS-CoV-2: Competition between variants and impact of reinfection. J Theor Biol 2023;574:111611. [PMID: 37640233 PMCID: PMC10592017 DOI: 10.1016/j.jtbi.2023.111611] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2023] [Revised: 07/16/2023] [Accepted: 08/22/2023] [Indexed: 08/31/2023]
5
Shakibfar S, Nyberg F, Li H, Zhao J, Nordeng HME, Sandve GKF, Pavlovic M, Hajiebrahimi M, Andersen M, Sessa M. Artificial intelligence-driven prediction of COVID-19-related hospitalization and death: a systematic review. Front Public Health 2023;11:1183725. [PMID: 37408750 PMCID: PMC10319067 DOI: 10.3389/fpubh.2023.1183725] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Accepted: 05/31/2023] [Indexed: 07/07/2023]  Open
6
Zhang J, Zheng N, Liu M, Yao D, Wang Y, Wang J, Xin J. Multi-weight susceptible-infected model for predicting COVID-19 in China. Neurocomputing 2023;534:161-170. [PMID: 36923265 PMCID: PMC9993734 DOI: 10.1016/j.neucom.2023.02.065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 01/10/2023] [Accepted: 02/26/2023] [Indexed: 03/17/2023]
7
Feng S, Park S, Choi YK, Im W. CHARMM-GUI Membrane Builder: Past, Current, and Future Developments and Applications. J Chem Theory Comput 2023;19:2161-2185. [PMID: 37014931 PMCID: PMC10174225 DOI: 10.1021/acs.jctc.2c01246] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/06/2023]
8
Men K, Li Y, Wang X, Zhang G, Hu J, Gao Y, Han A, Liu W, Han H. Estimate the incubation period of coronavirus 2019 (COVID-19). Comput Biol Med 2023;158:106794. [PMID: 37044045 PMCID: PMC10062796 DOI: 10.1016/j.compbiomed.2023.106794] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2022] [Revised: 02/23/2023] [Accepted: 03/20/2023] [Indexed: 04/14/2023]
9
Hasan MM, Islam MU, Sadeq MJ, Fung WK, Uddin J. Review on the Evaluation and Development of Artificial Intelligence for COVID-19 Containment. SENSORS (BASEL, SWITZERLAND) 2023;23:527. [PMID: 36617124 PMCID: PMC9824505 DOI: 10.3390/s23010527] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 12/23/2022] [Accepted: 12/29/2022] [Indexed: 06/17/2023]
10
Truszkowska A, Zino L, Butail S, Caroppo E, Jiang Z, Rizzo A, Porfiri M. Exploring a COVID-19 Endemic Scenario: High-Resolution Agent-Based Modeling of Multiple Variants. ADVANCED THEORY AND SIMULATIONS 2023;6:2200481. [PMID: 36718198 PMCID: PMC9878004 DOI: 10.1002/adts.202200481] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 09/29/2022] [Indexed: 11/13/2022]
11
Sheu RK, Pardeshi MS. A Survey on Medical Explainable AI (XAI): Recent Progress, Explainability Approach, Human Interaction and Scoring System. SENSORS (BASEL, SWITZERLAND) 2022;22:8068. [PMID: 36298417 PMCID: PMC9609212 DOI: 10.3390/s22208068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 10/18/2022] [Accepted: 10/18/2022] [Indexed: 06/16/2023]
12
Li Y, Zhang D, Gao X, Wang X, Zhang L. 2'- and 3'-Ribose Modifications of Nucleotide Analogues Establish the Structural Basis to Inhibit the Viral Replication of SARS-CoV-2. J Phys Chem Lett 2022;13:4111-4118. [PMID: 35503748 PMCID: PMC9088111 DOI: 10.1021/acs.jpclett.2c00087] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 04/27/2022] [Indexed: 05/12/2023]
13
Napolitano F, Gao X. Special issue on computational biology and bioinformatic applications to the COVID-19 pandemic. QUANTITATIVE BIOLOGY 2022. [DOI: 10.15302/j-qb-022-0293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
14
Душенков B, Душенкова A. [Not Available]. PAEMI SINO 2022;24:113-122. [PMID: 36225268 PMCID: PMC9553026 DOI: 10.25005/2074-0581-2022-24-1-113-122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
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