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Zhou J, Huang D, Liu C, Hu Z, Li H, Lou S. Research Progress in Heterologous Crocin Production. Mar Drugs 2023; 22:22. [PMID: 38248646 PMCID: PMC10820313 DOI: 10.3390/md22010022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2023] [Revised: 12/23/2023] [Accepted: 12/25/2023] [Indexed: 01/23/2024] Open
Abstract
Crocin is one of the most valuable components of the Chinese medicinal plant Crocus sativus and is widely used in the food, cosmetics, and pharmaceutical industries. Traditional planting of C. sativus is unable to fulfill the increasing demand for crocin in the global market, however, such that researchers have turned their attention to the heterologous production of crocin in a variety of hosts. At present, there are reports of successful heterologous production of crocin in Escherichia coli, Saccharomyces cerevisiae, microalgae, and plants that do not naturally produce crocin. Of these, the microalga Dunaliella salina, which produces high levels of β-carotene, the substrate for crocin biosynthesis, is worthy of attention. This article describes the biosynthesis of crocin, compares the features of each heterologous host, and clarifies the requirements for efficient production of crocin in microalgae.
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Affiliation(s)
- Junjie Zhou
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China; (J.Z.); (D.H.); (C.L.); (Z.H.); (H.L.)
| | - Danqiong Huang
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China; (J.Z.); (D.H.); (C.L.); (Z.H.); (H.L.)
| | - Chenglong Liu
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China; (J.Z.); (D.H.); (C.L.); (Z.H.); (H.L.)
| | - Zhangli Hu
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China; (J.Z.); (D.H.); (C.L.); (Z.H.); (H.L.)
- Shenzhen Engineering Laboratory for Marine Algal Biotechnology, Longhua Innovation Institute for Biotechnology, Shenzhen University, Shenzhen 518060, China
| | - Hui Li
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China; (J.Z.); (D.H.); (C.L.); (Z.H.); (H.L.)
- Shenzhen Engineering Laboratory for Marine Algal Biotechnology, Longhua Innovation Institute for Biotechnology, Shenzhen University, Shenzhen 518060, China
| | - Sulin Lou
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China; (J.Z.); (D.H.); (C.L.); (Z.H.); (H.L.)
- Shenzhen Engineering Laboratory for Marine Algal Biotechnology, Longhua Innovation Institute for Biotechnology, Shenzhen University, Shenzhen 518060, China
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Alcalá Briseño RI, Batuman O, Brawner J, Cuellar WJ, Delaquis E, Etherton BA, French-Monar RD, Kreuze JF, Navarrete I, Ogero K, Plex Sulá AI, Yilmaz S, Garrett KA. Translating virome analyses to support biosecurity, on-farm management, and crop breeding. FRONTIERS IN PLANT SCIENCE 2023; 14:1056603. [PMID: 36998684 PMCID: PMC10043385 DOI: 10.3389/fpls.2023.1056603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 02/14/2023] [Indexed: 06/19/2023]
Abstract
Virome analysis via high-throughput sequencing (HTS) allows rapid and massive virus identification and diagnoses, expanding our focus from individual samples to the ecological distribution of viruses in agroecological landscapes. Decreases in sequencing costs combined with technological advances, such as automation and robotics, allow for efficient processing and analysis of numerous samples in plant disease clinics, tissue culture laboratories, and breeding programs. There are many opportunities for translating virome analysis to support plant health. For example, virome analysis can be employed in the development of biosecurity strategies and policies, including the implementation of virome risk assessments to support regulation and reduce the movement of infected plant material. A challenge is to identify which new viruses discovered through HTS require regulation and which can be allowed to move in germplasm and trade. On-farm management strategies can incorporate information from high-throughput surveillance, monitoring for new and known viruses across scales, to rapidly identify important agricultural viruses and understand their abundance and spread. Virome indexing programs can be used to generate clean germplasm and seed, crucial for the maintenance of seed system production and health, particularly in vegetatively propagated crops such as roots, tubers, and bananas. Virome analysis in breeding programs can provide insight into virus expression levels by generating relative abundance data, aiding in breeding cultivars resistant, or at least tolerant, to viruses. The integration of network analysis and machine learning techniques can facilitate designing and implementing management strategies, using novel forms of information to provide a scalable, replicable, and practical approach to developing management strategies for viromes. In the long run, these management strategies will be designed by generating sequence databases and building on the foundation of pre-existing knowledge about virus taxonomy, distribution, and host range. In conclusion, virome analysis will support the early adoption and implementation of integrated control strategies, impacting global markets, reducing the risk of introducing novel viruses, and limiting virus spread. The effective translation of virome analysis depends on capacity building to make benefits available globally.
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Affiliation(s)
- Ricardo I. Alcalá Briseño
- Plant Pathology Department, University of Florida, Gainesville, FL, United States
- Global Food Systems Institute, University of Florida, Gainesville, FL, United States
- Emerging Pathogens Institute, University of Florida, Gainesville, FL, United States
- Plant Pathology Department, Oregon State University, Corvallis, OR, United States
| | - Ozgur Batuman
- Plant Pathology Department, University of Florida, Gainesville, FL, United States
- Southwest Florida Research and Education Center (SWFREC), Immokalee, FL, United States
| | - Jeremy Brawner
- Plant Pathology Department, University of Florida, Gainesville, FL, United States
| | - Wilmer J. Cuellar
- International Center for Tropical Agriculture (CIAT), Cali, Colombia
| | - Erik Delaquis
- International Center for Tropical Agriculture (CIAT), Vientiane, Laos
| | - Berea A. Etherton
- Plant Pathology Department, University of Florida, Gainesville, FL, United States
- Global Food Systems Institute, University of Florida, Gainesville, FL, United States
- Emerging Pathogens Institute, University of Florida, Gainesville, FL, United States
| | | | - Jan F. Kreuze
- Crop and System Sciences Division, International Potato Center (CIP), Lima, Peru
| | - Israel Navarrete
- Crop and System Sciences Division, International Potato Center (CIP), Quito, Ecuador
| | - Kwame Ogero
- Crop and System Sciences Division, International Potato Center (CIP), Mwanza, Tanzania
| | - Aaron I. Plex Sulá
- Plant Pathology Department, University of Florida, Gainesville, FL, United States
- Global Food Systems Institute, University of Florida, Gainesville, FL, United States
- Emerging Pathogens Institute, University of Florida, Gainesville, FL, United States
| | - Salih Yilmaz
- Plant Pathology Department, University of Florida, Gainesville, FL, United States
- Southwest Florida Research and Education Center (SWFREC), Immokalee, FL, United States
| | - Karen A. Garrett
- Plant Pathology Department, University of Florida, Gainesville, FL, United States
- Global Food Systems Institute, University of Florida, Gainesville, FL, United States
- Emerging Pathogens Institute, University of Florida, Gainesville, FL, United States
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3
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Yang F, Crossley MS, Schrader L, Dubovskiy IM, Wei SJ, Zhang R. Polygenic adaptation contributes to the invasive success of the Colorado potato beetle. Mol Ecol 2022; 31:5568-5580. [PMID: 35984732 DOI: 10.1111/mec.16666] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/03/2021] [Revised: 07/03/2022] [Accepted: 08/15/2022] [Indexed: 12/24/2022]
Abstract
How invasive species cope with novel selective pressures with limited genetic variation is a fundamental question in molecular ecology. Several mechanisms have been proposed, but they can lack generality. Here, we addressed an alternative solution, polygenic adaptation, wherein traits that arise from multiple combinations of loci may be less sensitive to loss of variation during invasion. We tested the polygenic signal of environmental adaptation of Colorado potato beetle (CPB) introduced in Eurasia. Population genomic analyses showed declining genetic diversity in the eastward expansion of Eurasian populations, and weak population genetic structure (except for the invasion fronts in Asia). Demographic history showed that all populations shared a strong bottleneck about 100 years ago when CPB was introduced to Europe. Genome scans revealed a suite of genes involved in activity regulation functions that are plausibly related to cold stress, including some well-founded functions (e.g., the activity of phosphodiesterase, the G-protein regulator) and discrete functions. Such polygenic architecture supports the hypothesis that polygenic adaptation and potentially genetic redundancy can fuel the adaptation of CPB despite strong genetic depletion, thus representing a promising general mechanism for resolving the genetic paradox of invasion. More broadly, most complex traits based on polygenes may be less sensitive to invasive bottlenecks, thus ensuring the evolutionary success of invasive species in novel environments.
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Affiliation(s)
- Fangyuan Yang
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.,Beijing Academy of Agriculture and Forestry Sciences, Institute of Plant and Environmental Protection, Beijing, China
| | - Michael S Crossley
- Department of Entomology and Wildlife Ecology, University of Delaware, Newark, Delaware, USA
| | - Lukas Schrader
- Institute for Evolution & Biodiversity, University of Münster, Münster, Germany
| | - Ivan M Dubovskiy
- Laboratory of Biological Plant Protection and Biotechnology, Novosibirsk State Agrarian University, Novosibirsk, Russia
| | - Shu-Jun Wei
- Beijing Academy of Agriculture and Forestry Sciences, Institute of Plant and Environmental Protection, Beijing, China
| | - Runzhi Zhang
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.,College of Life Science, University of Chinese Academy of Sciences, Beijing, China
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4
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Wyckhuys KA, Zhang W, Colmenarez YC, Simelton E, Sander BO, Lu Y. Tritrophic defenses as a central pivot of low-emission, pest-suppressive farming systems. CURRENT OPINION IN ENVIRONMENTAL SUSTAINABILITY 2022; 58:101208. [PMID: 36320406 PMCID: PMC9611972 DOI: 10.1016/j.cosust.2022.101208] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
The ongoing COVID-19 pandemic has spotlighted the intricate connections between human and planetary health. Given that pesticide-centered crop protection degrades ecological resilience and (in-)directly harms human health, the adoption of ecologically sound, biodiversity-driven alternatives is imperative. In this Synthesis paper, we illuminate how ecological forces can be manipulated to bolster 'tritrophic defenses' against crop pests, pathogens, and weeds. Three distinct, yet mutually compatible approaches (habitat-mediated, breeding-dependent, and epigenetic tactics) can be deployed at different organizational levels, that is, from an individual seed to entire farming landscapes. Biodiversity can be harnessed for crop protection through ecological infrastructures, diversification tactics, and reconstituted soil health. Crop diversification is ideally guided by interorganismal interplay and plant-soil feedbacks, entailing resistant cultivars, rotation schemes, or multicrop arrangements. Rewarding opportunities also exist to prime plants for enhanced immunity or indirect defenses. As tritrophic defenses spawn multiple societal cobenefits, they could become core features of healthy, climate-resilient, and low-carbon food systems.
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Affiliation(s)
- Kris Ag Wyckhuys
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
- University of Queensland, Brisbane, Australia
- Fujian Agriculture and Forestry University, Fuzhou, China
- Chrysalis Consulting, Hanoi, Viet Nam
| | - Wei Zhang
- International Food Policy Research Institute (IFPRI-CGIAR), Washington DC, USA
| | | | | | - Bjorn O Sander
- International Rice Research Institute (IRRI-CGIAR), Hanoi, Viet Nam
| | - Yanhui Lu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
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5
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Garrett KA, Bebber DP, Etherton BA, Gold KM, Plex Sulá AI, Selvaraj MG. Climate Change Effects on Pathogen Emergence: Artificial Intelligence to Translate Big Data for Mitigation. ANNUAL REVIEW OF PHYTOPATHOLOGY 2022; 60:357-378. [PMID: 35650670 DOI: 10.1146/annurev-phyto-021021-042636] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Plant pathology has developed a wide range of concepts and tools for improving plant disease management, including models for understanding and responding to new risks from climate change. Most of these tools can be improved using new advances in artificial intelligence (AI), such as machine learning to integrate massive data sets in predictive models. There is the potential to develop automated analyses of risk that alert decision-makers, from farm managers to national plant protection organizations, to the likely need for action and provide decision support for targeting responses. We review machine-learning applications in plant pathology and synthesize ideas for the next steps to make the most of these tools in digital agriculture. Global projects, such as the proposed global surveillance system for plant disease, will be strengthened by the integration of the wide range of new data, including data from tools like remote sensors, that are used to evaluate the risk ofplant disease. There is exciting potential for the use of AI to strengthen global capacity building as well, from image analysis for disease diagnostics and associated management recommendations on farmers' phones to future training methodologies for plant pathologists that are customized in real-time for management needs in response to the current risks. International cooperation in integrating data and models will help develop the most effective responses to new challenges from climate change.
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Affiliation(s)
- K A Garrett
- Plant Pathology Department, University of Florida, Gainesville, Florida, USA;
- Food Systems Institute, University of Florida, Gainesville, Florida, USA
- Emerging Pathogens Institute, University of Florida, Gainesville, Florida, USA
| | - D P Bebber
- Department of Biosciences, University of Exeter, Exeter, United Kingdom
| | - B A Etherton
- Plant Pathology Department, University of Florida, Gainesville, Florida, USA;
- Food Systems Institute, University of Florida, Gainesville, Florida, USA
- Emerging Pathogens Institute, University of Florida, Gainesville, Florida, USA
| | - K M Gold
- Plant Pathology and Plant Microbe Biology Section, School of Integrative Plant Sciences, Cornell AgriTech, Cornell University, Geneva, New York, USA
| | - A I Plex Sulá
- Plant Pathology Department, University of Florida, Gainesville, Florida, USA;
- Food Systems Institute, University of Florida, Gainesville, Florida, USA
- Emerging Pathogens Institute, University of Florida, Gainesville, Florida, USA
| | - M G Selvaraj
- The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT), Cali, Colombia
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Kwibuka Y, Nyirakanani C, Bizimana JP, Bisimwa E, Brostaux Y, Lassois L, Vanderschuren H, Massart S. Risk factors associated with cassava brown streak disease dissemination through seed pathways in Eastern D.R. Congo. FRONTIERS IN PLANT SCIENCE 2022; 13:803980. [PMID: 35937329 PMCID: PMC9354974 DOI: 10.3389/fpls.2022.803980] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2021] [Accepted: 06/30/2022] [Indexed: 06/15/2023]
Abstract
Vegetatively propagated crops are particularly prone to disease dissemination through their seed systems. Strict phytosanitary measures are important to limit the impact of diseases as illustrated by the potato seed system in Europe. Cassava brown streak disease (CBSD) is a devastating disease caused by two viral species collectively named cassava brown streak viruses (CBSVs). CBSD can cause substantial root yield losses of up to 100% in the worst affected areas and is easily transmitted through stem cuttings. In Eastern and Central Africa, the epidemiology of CBSVs in the local socio-economical context of production remains poorly known while a better understanding would be an asset to properly manage the disease. This lack of information explains partially the limited efficiency of current regulatory schemes in increasing the availability of quality seed to smallholders and mitigating the spread of pests and diseases. This study surveyed the epidemiology of CBSVs in Uvira territory, Eastern D.R. Congo, and its drivers using a multivariate approach combining farmer's interview, field observation, sampling and molecular detection of CBSVs. Investigation on the epidemiology of CBSD revealed that three clusters in the study area could be identified using five most significant factors: (i) symptoms incidence, (ii) number of whiteflies, (iii) types of foliar symptoms, (iv) cutting's pathways and (v) plant age. Among the three clusters identified, one proved to be potentially interesting for seed multiplication activities since the disease pressure was the lowest. Through risk assessment, we also identified several key socio-economic determinants on disease epidemy: (i) factors related to farmer's knowledge and awareness (knowledge of cassava pests and diseases, knowledge of management practices, support from extension services and management strategies applied), (ii) factors related to the geographical location of farmer's fields (proximity to borders, proximity to town, distance to acquire cuttings), as well as (iii) the pathways used to acquire cuttings.
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Affiliation(s)
- Yves Kwibuka
- Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
- Faculté des Sciences Agronomiques, Université Catholique de Bukavu, Bukavu, Democratic Republic of Congo
| | - Chantal Nyirakanani
- Plant Genetics Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
| | - Jean Pierre Bizimana
- Plant Genetics Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
- Department of Research, Rwanda Agriculture and Animal Resources Development Board, Huye, Rwanda
| | - Espoir Bisimwa
- Faculté des Sciences Agronomiques, Université Catholique de Bukavu, Bukavu, Democratic Republic of Congo
| | - Yves Brostaux
- Applied Statistics, Computer Science and Modeling Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
| | - Ludivine Lassois
- Plant Genetics Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
| | - Herve Vanderschuren
- Plant Genetics Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
- Laboratory of Tropical Crop Improvement, Division of Crop Biotechnics, Department of Biosystems, KU Leuven, Leuven, Belgium
| | - Sebastien Massart
- Plant Pathology Laboratory, TERRA-Gembloux Agro-Bio Tech, University of Liège, Gembloux, Belgium
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Buddenhagen CE, Xing Y, Andrade-Piedra JL, Forbes GA, Kromann P, Navarrete I, Thomas-Sharma S, Choudhury RA, Andersen Onofre KF, Schulte-Geldermann E, Etherton BA, Plex Sulá AI, Garrett KA. Where to Invest Project Efforts for Greater Benefit: A Framework for Management Performance Mapping with Examples for Potato Seed Health. PHYTOPATHOLOGY 2022; 112:1431-1443. [PMID: 34384240 DOI: 10.1094/phyto-05-20-0202-r] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Policymakers and donors often need to identify the locations where technologies are most likely to have important effects, to increase the benefits from agricultural development or extension efforts. Higher-quality information may help to target the high-benefit locations, but often actions are needed with limited information. The value of information (VOI) in this context is formalized by evaluating the results of decision making guided by a set of specific information compared with the results of acting without considering that information. We present a framework for management performance mapping that includes evaluating the VOI for decision making about geographic priorities in regional intervention strategies, in case studies of Andean and Kenyan potato seed systems. We illustrate the use of recursive partitioning, XGBoost, and Bayesian network models to characterize the relationships among seed health and yield responses and environmental and management predictors used in studies of seed degeneration. These analyses address the expected performance of an intervention based on geographic predictor variables. In the Andean example, positive selection of seed from asymptomatic plants was more effective at high altitudes in Ecuador. In the Kenyan example, there was the potential to target locations with higher technology adoption rates and with higher potato cropland connectivity, i.e., a likely more important role in regional epidemics. Targeting training to high management performance areas would often provide more benefits than would random selection of target areas. We illustrate how assessing the VOI can contribute to targeted development programs and support a culture of continuous improvement for interventions.[Formula: see text] Copyright © 2022 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.
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Affiliation(s)
- C E Buddenhagen
- Plant Pathology Department, University of Florida, Gainesville, U.S.A
- Food Systems Institute, University of Florida, Gainesville, U.S.A
- Emerging Pathogens Institute, University of Florida, Gainesville, U.S.A
- AgResearch, Ltd., Ruakura, Hamilton, New Zealand
| | - Y Xing
- Plant Pathology Department, University of Florida, Gainesville, U.S.A
- Food Systems Institute, University of Florida, Gainesville, U.S.A
- Emerging Pathogens Institute, University of Florida, Gainesville, U.S.A
| | | | | | - P Kromann
- International Potato Center, Lima, Peru
- Field Crops, Wageningen University and Research, Lelystad, The Netherlands
| | - I Navarrete
- International Potato Center, Lima, Peru
- Centre for Crop Systems Analysis, Wageningen University and Research, Wageningen, The Netherlands
- Knowledge, Technology and Innovation, Wageningen University and Research, Wageningen, The Netherlands
| | - S Thomas-Sharma
- Department of Plant Pathology and Crop Physiology, Louisiana State University Agricultural Center, Baton Rouge, U.S.A
| | - R A Choudhury
- Plant Pathology Department, University of Florida, Gainesville, U.S.A
- Food Systems Institute, University of Florida, Gainesville, U.S.A
- Emerging Pathogens Institute, University of Florida, Gainesville, U.S.A
- School of Earth, Environment, Marine Science, University of Texas, Rio Grande Valley, U.S.A
| | - K F Andersen Onofre
- Plant Pathology Department, University of Florida, Gainesville, U.S.A
- Food Systems Institute, University of Florida, Gainesville, U.S.A
- Emerging Pathogens Institute, University of Florida, Gainesville, U.S.A
- Department of Plant Pathology, Kansas State University, Manhattan, U.S.A
| | - E Schulte-Geldermann
- International Potato Center, Nairobi, Kenya
- Department of Agriculture, University of Applied Sciences Bingen, Bingen, Germany
| | - B A Etherton
- Plant Pathology Department, University of Florida, Gainesville, U.S.A
- Food Systems Institute, University of Florida, Gainesville, U.S.A
- Emerging Pathogens Institute, University of Florida, Gainesville, U.S.A
| | - A I Plex Sulá
- Plant Pathology Department, University of Florida, Gainesville, U.S.A
- Food Systems Institute, University of Florida, Gainesville, U.S.A
- Emerging Pathogens Institute, University of Florida, Gainesville, U.S.A
| | - K A Garrett
- Plant Pathology Department, University of Florida, Gainesville, U.S.A
- Food Systems Institute, University of Florida, Gainesville, U.S.A
- Emerging Pathogens Institute, University of Florida, Gainesville, U.S.A
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8
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Garrett KA. Impact network analysis and the
ina r
package: Decision support for regional management interventions. Methods Ecol Evol 2021. [DOI: 10.1111/2041-210x.13655] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Karen A. Garrett
- Plant Pathology Department Food Systems Institute Emerging Pathogens Institute University of Florida Gainesville FL USA
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9
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Ndjouenkeu R, Ngoualem Kegah F, Teeken B, Okoye B, Madu T, Olaosebikan OD, Chijioke U, Bello A, Oluwaseun Osunbade A, Owoade D, Takam‐Tchuente NH, Biaton Njeufa E, Nguiadem Chomdom IL, Forsythe L, Maziya‐Dixon B, Fliedel G. From cassava to gari: mapping of quality characteristics and end-user preferences in Cameroon and Nigeria. Int J Food Sci Technol 2021; 56:1223-1238. [PMID: 33776232 PMCID: PMC7984457 DOI: 10.1111/ijfs.14790] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 09/09/2020] [Indexed: 12/02/2022]
Abstract
User's preferences of cassava and cassava products along the value chain are supported by specific root quality characteristics that can be linked to root traits. Therefore, providing an evidence base of user preferred characteristics along the value chain can help in the functional choice of cassava varieties. In this respect, the present paper presents the results from focus group discussions and individual interviews on user preferred quality characteristics of raw cassava roots and the derived product, gari, - one of the major cassava products in Sub-Saharan Africa - in major production and consumption areas of Cameroon and Nigeria. Choice of cassava varieties for farming is mainly determined by the multiple end uses of the roots, their agricultural yield and the processing determinants of roots that support their major high-quality characteristics: size, density, low water content, maturity, colour and safety. Processing of cassava roots into gari goes through different technological variants leading to a gari whose high-quality characteristics are dryness, colour, shiny/attractive appearance, uniform granules and taste. Eba, the major consumption form of gari in Cameroon and Nigeria, is mainly characterised by its textural properties: smoothness, firmness, stickiness, elasticity and mouldability. Recommendations are made, suggesting that breeding will have to start evaluating cassava clones for brightness/shininess, as well as textural properties such as mouldability and elasticity of cassava food products, for the purpose of supporting decision-making by breeders and the development of high-throughput selection methods of cassava varieties. Women are identified as important beneficiaries of such initiatives giving their disadvantaged position and their prominent role in cassava processing and marketing of gari.
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Affiliation(s)
- Robert Ndjouenkeu
- Department of Food Science and NutritionENSAIUniversity of NgaoundéréNgaounderePO Box 455Cameroun
| | - Franklin Ngoualem Kegah
- Department of Food Science and NutritionENSAIUniversity of NgaoundéréNgaounderePO Box 455Cameroun
| | - Béla Teeken
- International Institute of Tropical Agriculture (IITA)Oyo RoadIbadanNigeria
| | - Benjamin Okoye
- National Root Crops Research Institute (NRCRI)Km 8 Umuahia‐Ikot Ekpene RoadUmudikeAbia StateP.M.B. 7006Nigeria
| | - Tessy Madu
- National Root Crops Research Institute (NRCRI)Km 8 Umuahia‐Ikot Ekpene RoadUmudikeAbia StateP.M.B. 7006Nigeria
| | | | - Ugo Chijioke
- National Root Crops Research Institute (NRCRI)Km 8 Umuahia‐Ikot Ekpene RoadUmudikeAbia StateP.M.B. 7006Nigeria
| | - Abolore Bello
- International Institute of Tropical Agriculture (IITA)Oyo RoadIbadanNigeria
| | | | - Durodola Owoade
- International Institute of Tropical Agriculture (IITA)Oyo RoadIbadanNigeria
| | - Noel Hubert Takam‐Tchuente
- International Institute of Tropical Agriculture (IITA) Eco‐regional Center HFSIRAD Main Road, NkolbissonYaoundéBP 2008 (Messa)Cameroon
| | - Esther Biaton Njeufa
- International Institute of Tropical Agriculture (IITA) Eco‐regional Center HFSIRAD Main Road, NkolbissonYaoundéBP 2008 (Messa)Cameroon
| | - Isabelle Linda Nguiadem Chomdom
- International Institute of Tropical Agriculture (IITA) Eco‐regional Center HFSIRAD Main Road, NkolbissonYaoundéBP 2008 (Messa)Cameroon
| | - Lora Forsythe
- Natural Resources InstituteUniversity of GreenwichCentral AvenueChatham MaritimeKentME4 4TBUK
| | - Busie Maziya‐Dixon
- International Institute of Tropical Agriculture (IITA)Oyo RoadIbadanNigeria
| | - Geneviève Fliedel
- CIRADUMR QualisudMontpellierF‐34398France
- QualisudUniv MontpellierCIRAD, Montpellier SupAgroUniv d'AvignonUniv de La RéunionMontpellierF‐34398France
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Phytosanitary Interventions for Safe Global Germplasm Exchange and the Prevention of Transboundary Pest Spread: The Role of CGIAR Germplasm Health Units. PLANTS 2021; 10:plants10020328. [PMID: 33572058 PMCID: PMC7915052 DOI: 10.3390/plants10020328] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2020] [Revised: 01/10/2021] [Accepted: 01/28/2021] [Indexed: 02/06/2023]
Abstract
The inherent ability of seeds (orthodox, intermediate, and recalcitrant seeds and vegetative propagules) to serve as carriers of pests and pathogens (hereafter referred to as pests) and the risk of transboundary spread along with the seed movement present a high-risk factor for international germplasm distribution activities. Quarantine and phytosanitary procedures have been established by many countries around the world to minimize seed-borne pest spread by screening export and import consignments of germplasm. The effectiveness of these time-consuming and cost-intensive procedures depends on the knowledge of pest distribution, availability of diagnostic tools for seed health testing, qualified operators, procedures for inspection, and seed phytosanitation. This review describes a unique multidisciplinary approach used by the CGIAR Germplasm Health Units (GHUs) in ensuring phytosanitary protection for the safe conservation and global movement of germplasm from the 11 CGIAR genebanks and breeding programs that acquire and distribute germplasm to and from all parts of the world for agricultural research and food security. We also present the challenges, lessons learned, and recommendations stemming from the experience of GHUs, which collaborate with the national quarantine systems to export and distribute about 100,000 germplasm samples annually to partners located in about 90 to 100 countries. Furthermore, we describe how GHUs adjust their procedures to stay in alignment with evolving phytosanitary regulations and pest risk scenarios. In conclusion, we state the benefits of globally coordinated phytosanitary networks for the prevention of the intercontinental spread of pests that are transmissible through plant propagation materials.
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Devaux A, Goffart JP, Kromann P, Andrade-Piedra J, Polar V, Hareau G. The Potato of the Future: Opportunities and Challenges in Sustainable Agri-food Systems. POTATO RESEARCH 2021; 64:681-720. [PMID: 34334803 PMCID: PMC8302968 DOI: 10.1007/s11540-021-09501-4] [Citation(s) in RCA: 42] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 02/18/2021] [Indexed: 05/06/2023]
Abstract
In the coming decades, feeding the expanded global population nutritiously and sustainably will require substantial improvements to the global food system worldwide. The main challenge will be how to produce more food with the same or fewer resources and waste less. Food security has four dimensions: food availability, food access, food use and quality, and food stability. Among several other food sources, the potato crop is one that can help match all these constraints worldwide due to its highly diverse distribution pattern, and its current cultivation and demand, particularly in developing countries with high levels of poverty, hunger, and malnutrition. After an overview of the current situation of global hunger, food security, and agricultural growth, followed by a review of the importance of the potato in the current global food system and its role played as a food security crop, this paper analyses and discusses how potato research and innovation can contribute to sustainable agri-food systems comparing rural and industrial agri-food systems with reference to food security indicators. It concludes with a discussion about the challenges for sustainable potato cropping enhancement considering the needs to increase productivity in rural-based potato food systems that predominate in low-income countries, while promoting better resource management and optimization in industrial-based agri-food systems considering factors such as quality, diversity of products, health impacts, and climate change effects. Research and innovation options and policies that could facilitate the requirements of both rural and industrial potato-based agri-food systems are described.
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Affiliation(s)
- André Devaux
- International Potato Center (CIP), Louvain-la-Neuve, Belgium
| | | | - Peter Kromann
- Field Crops, Wageningen Plant Research, Wageningen University & Research, Lelystad, The Netherlands
| | - Jorge Andrade-Piedra
- International Potato Center (CIP), CGIAR Research Program on Roots Tubers and Bananas, Lima, Peru
| | - Vivian Polar
- CGIAR Research Program on Roots, Tubers and Bananas (RTB), CIP, Lima, Peru
| | - Guy Hareau
- International Potato Center (CIP), CGIAR Research Program on Roots Tubers and Bananas, Lima, Peru
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Management Policies for Invasive Alien Species: Addressing the Impacts Rather than the Species. Bioscience 2020. [DOI: 10.1093/biosci/biaa139] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Abstract
Effective long-term management is needed to address the impacts of invasive alien species (IAS) that cannot be eradicated. We describe the fundamental characteristics of long-term management policies for IAS, diagnose a major shortcoming, and outline how to produce effective IAS management. Key international and transnational management policies conflate addressing IAS impacts with controlling IAS populations. This serious purpose–implementation gap can preclude the development of broader portfolios of interventions to tackle IAS impacts. We posit that IAS management strategies should directly address impacts via impact-based interventions, and we propose six criteria to inform the choice of these interventions. We review examples of interventions focused on tackling IAS impacts, including IAS control, which reveal the range of interventions available and their varying effectiveness in counteracting IAS impacts. As the impacts caused by IAS increase globally, stakeholders need to have access to a broader and more effective set of tools to respond.
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