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Lee HJ, Dworetsky A, Labora N, Gratton C. Using precision approaches to improve brain-behavior prediction. Trends Cogn Sci 2024:S1364-6613(24)00229-8. [PMID: 39419740 DOI: 10.1016/j.tics.2024.09.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 09/12/2024] [Accepted: 09/13/2024] [Indexed: 10/19/2024]
Abstract
Predicting individual behavioral traits from brain idiosyncrasies has broad practical implications, yet predictions vary widely. This constraint may be driven by a combination of signal and noise in both brain and behavioral variables. Here, we expand on this idea, highlighting the potential of extended sampling 'precision' studies. First, we discuss their relevance to improving the reliability of individualized estimates by minimizing measurement noise. Second, we review how targeted within-subject experiments, when combined with individualized analysis or modeling frameworks, can maximize signal. These improvements in signal-to-noise facilitated by precision designs can help boost prediction studies. We close by discussing the integration of precision approaches with large-sample consortia studies to leverage the advantages of both.
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Affiliation(s)
- Hyejin J Lee
- Department of Psychology, Florida State University, Tallahassee, FL, USA; Department of Psychology, Beckman Institute, University of Illinois Urbana-Champaign, Champaign, IL, USA.
| | - Ally Dworetsky
- Department of Psychology, Florida State University, Tallahassee, FL, USA
| | - Nathan Labora
- Department of Psychology, Florida State University, Tallahassee, FL, USA
| | - Caterina Gratton
- Department of Psychology, Florida State University, Tallahassee, FL, USA; Department of Psychology, Beckman Institute, University of Illinois Urbana-Champaign, Champaign, IL, USA.
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Ooi LQR, Orban C, Zhang S, Nichols TE, Tan TWK, Kong R, Marek S, Dosenbach NU, Laumann T, Gordon EM, Yap KH, Ji F, Chong JSX, Chen C, An L, Franzmeier N, Roemer SN, Hu Q, Ren J, Liu H, Chopra S, Cocuzza CV, Baker JT, Zhou JH, Bzdok D, Eickhoff SB, Holmes AJ, Yeo BTT. MRI economics: Balancing sample size and scan duration in brain wide association studies. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.16.580448. [PMID: 38405815 PMCID: PMC10889017 DOI: 10.1101/2024.02.16.580448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/27/2024]
Abstract
A pervasive dilemma in neuroimaging is whether to prioritize sample size or scan time given fixed resources. Here, we systematically investigate this trade-off in the context of brain-wide association studies (BWAS) using functional magnetic resonance imaging (fMRI). We find that total scan duration (sample size × scan time per participant) robustly explains individual-level phenotypic prediction accuracy via a logarithmic model, suggesting that sample size and scan time are broadly interchangeable up to 20-30 min of data. However, the returns of scan time diminish relative to sample size, which we explain with principled theoretical derivations. When accounting for fixed overhead costs associated with each participant (e.g., recruitment, non-imaging measures), prediction accuracy in many small-scale and some large-scale BWAS might benefit from longer scan time than typically assumed. These results generalize across phenotypic domains, scanners, acquisition protocols, racial groups, mental disorders, age groups, as well as resting-state and task-state functional connectivity. Overall, our study emphasizes the importance of scan time, which is ignored in standard power calculations. Standard power calculations maximize sample size, at the expense of scan time, which can result in sub-optimal prediction accuracies and inefficient use of resources. Our empirically informed reference is available for future study design: WEB_APPLICATION_LINK.
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Affiliation(s)
- Leon Qi Rong Ooi
- Integrative Sciences and Engineering Programme (ISEP), National University of Singapore
- Centre for Sleep and Cognition & Centre for Translational MR Research, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Medicine, Healthy Longevity Translational Research Programme, Human Potential Translational Research Programme & Institute for Digital Medicine (WisDM), Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore
- N.1 Institute for Health, National University of Singapore, Singapore
| | - Csaba Orban
- Centre for Sleep and Cognition & Centre for Translational MR Research, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Medicine, Healthy Longevity Translational Research Programme, Human Potential Translational Research Programme & Institute for Digital Medicine (WisDM), Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore
- N.1 Institute for Health, National University of Singapore, Singapore
| | - Shaoshi Zhang
- Integrative Sciences and Engineering Programme (ISEP), National University of Singapore
- Centre for Sleep and Cognition & Centre for Translational MR Research, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Medicine, Healthy Longevity Translational Research Programme, Human Potential Translational Research Programme & Institute for Digital Medicine (WisDM), Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore
- N.1 Institute for Health, National University of Singapore, Singapore
| | - Thomas E. Nichols
- Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, Nuffield Department of Population Health, University of Oxford, Oxford, UK
| | - Trevor Wei Kiat Tan
- Integrative Sciences and Engineering Programme (ISEP), National University of Singapore
- Centre for Sleep and Cognition & Centre for Translational MR Research, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Medicine, Healthy Longevity Translational Research Programme, Human Potential Translational Research Programme & Institute for Digital Medicine (WisDM), Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore
- N.1 Institute for Health, National University of Singapore, Singapore
| | - Ru Kong
- Centre for Sleep and Cognition & Centre for Translational MR Research, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Medicine, Healthy Longevity Translational Research Programme, Human Potential Translational Research Programme & Institute for Digital Medicine (WisDM), Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore
- N.1 Institute for Health, National University of Singapore, Singapore
| | - Scott Marek
- Mallinckrodt Institute of Radiology, Washington University, School of Medicine, USA
| | - Nico U.F. Dosenbach
- Mallinckrodt Institute of Radiology, Washington University, School of Medicine, USA
- Department of Neurology, Washington University, School of Medicine, USA
- Department of Psychiatry, Washington University, School of Medicine, USA
- Deparments of Paediatrics, Biomedical Engineering, and Psychological and Brain Sciences, Washington University, School of Medicine, USA
| | - Timothy Laumann
- Department of Psychiatry, Washington University, School of Medicine, USA
| | - Evan M Gordon
- Mallinckrodt Institute of Radiology, Washington University, School of Medicine, USA
| | - Kwong Hsia Yap
- Memory, Ageing and Cognition Centre, National University Health System, Singapore
- Department of Pharmacology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
| | - Fang Ji
- Centre for Sleep and Cognition & Centre for Translational MR Research, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Medicine, Healthy Longevity Translational Research Programme, Human Potential Translational Research Programme & Institute for Digital Medicine (WisDM), Yong Loo Lin School of Medicine, National University of Singapore, Singapore
| | - Joanna Su Xian Chong
- Centre for Sleep and Cognition & Centre for Translational MR Research, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Medicine, Healthy Longevity Translational Research Programme, Human Potential Translational Research Programme & Institute for Digital Medicine (WisDM), Yong Loo Lin School of Medicine, National University of Singapore, Singapore
| | - Christopher Chen
- Memory, Ageing and Cognition Centre, National University Health System, Singapore
- Department of Pharmacology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
| | - Lijun An
- Department of Clinical Sciences, Malmö, SciLifeLab, Lund University, Lund, Sweden
| | - Nicolai Franzmeier
- Institute for Stroke and Dementia Research, LMU Munich, Munich, Germany
- Munich Cluster for Systems Neurology (SyNergy), Munich, Germany
- Department of Psychiatry and Neurochemistry, Institute of Neuroscience and Physiology, University of Gothenburg, The Sahlgrenska Academy, Gothenburg, Sweden
| | - Sebastian Niclas Roemer
- Institute for Stroke and Dementia Research, LMU Munich, Munich, Germany
- Department of Neurology, LMU Hospital, LMU Munich, Munich, Germany
| | - Qingyu Hu
- Division of Brain Sciences, Changping Laboratory, Beijing, China
| | - Jianxun Ren
- Division of Brain Sciences, Changping Laboratory, Beijing, China
| | - Hesheng Liu
- Division of Brain Sciences, Changping Laboratory, Beijing, China
- Biomedical Pioneering Innovation Center (BIOPIC), Peking University, Beijing, China
| | - Sidhant Chopra
- Department of Psychology, Yale University, New Haven, CT, USA
- Department of Psychiatry, Brain Health Institute, Rutgers University, Piscataway, NJ, USA
- Orygen, Center for Youth Mental Health, University of Melbourne, Melbourne, Australia
| | - Carrisa V. Cocuzza
- Department of Psychology, Yale University, New Haven, CT, USA
- Department of Psychiatry, Brain Health Institute, Rutgers University, Piscataway, NJ, USA
| | - Justin T. Baker
- Department of Psychiatry, Harvard Medical School, Boston, USA
- Institute for Technology in Psychiatry, McLean Hospital, Boston, USA
| | - Juan Helen Zhou
- Integrative Sciences and Engineering Programme (ISEP), National University of Singapore
- Centre for Sleep and Cognition & Centre for Translational MR Research, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Medicine, Healthy Longevity Translational Research Programme, Human Potential Translational Research Programme & Institute for Digital Medicine (WisDM), Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore
| | - Danilo Bzdok
- Department of Biomedical Engineering, McConnell Brain Imaging Centre, Montreal Neurological Institute, Canada
- Faculty of Medicine, School of Computer Science, McGill University, Montreal, QC, Canada
- Mila - Quebec Artificial Intelligence Institute, Montreal, QC, Canada
| | - Simon B. Eickhoff
- Institute of Neuroscience and Medicine, Brain & Behaviour (INM-7), Research Center Jülich, Jülich, Germany
- Institute for Systems Neuroscience, Medical Faculty, Heinrich-Heine University Düsseldorf, Düsseldorf, Germany
| | - Avram J. Holmes
- Department of Psychiatry, Brain Health Institute, Rutgers University, Piscataway, NJ, USA
| | - B. T. Thomas Yeo
- Integrative Sciences and Engineering Programme (ISEP), National University of Singapore
- Centre for Sleep and Cognition & Centre for Translational MR Research, Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Medicine, Healthy Longevity Translational Research Programme, Human Potential Translational Research Programme & Institute for Digital Medicine (WisDM), Yong Loo Lin School of Medicine, National University of Singapore, Singapore
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore
- N.1 Institute for Health, National University of Singapore, Singapore
- Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, MA, USA
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