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Takeuchi Y, Yamashiro K, Noguchi A, Liu J, Mitsui S, Ikegaya Y, Matsumoto N. Machine learning-based segmentation of the rodent hippocampal CA2 area from Nissl-stained sections. Front Neuroanat 2023; 17:1172512. [PMID: 37449243 PMCID: PMC10336234 DOI: 10.3389/fnana.2023.1172512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 06/05/2023] [Indexed: 07/18/2023] Open
Abstract
The hippocampus is a center of learning, memory, and spatial navigation. This region is divided into the CA1, CA2, and CA3 areas, which are anatomically different from each other. Among these divisions, the CA2 area is unique in terms of functional relevance to sociality. The CA2 area is often manually detected based on the size, shape, and density of neurons in the hippocampal pyramidal cell layer, but this manual segmentation relying on cytoarchitecture is impractical to apply to a large number of samples and dependent on experimenters' proficiency. Moreover, the CA2 area has been defined based on expression pattern of molecular marker proteins, but it generally takes days to complete immunostaining for such proteins. Thus, we asked whether the CA2 area can be systematically segmented based on cytoarchitecture alone. Since the expression pattern of regulator of G-protein signaling 14 (RGS14) signifies the CA2 area, we visualized the CA2 area in the mouse hippocampus by RGS14-immunostaining and Nissl-counterstaining and manually delineated the CA2 area. We then established "CAseg," a machine learning-based automated algorithm to segment the CA2 area with the F1-score of approximately 0.8 solely from Nissl-counterstained images that visualized cytoarchitecture. CAseg was extended to the segmentation of the prairie vole CA2 area, which raises the possibility that the use of this algorithm can be expanded to other species. Thus, CAseg will be beneficial for investigating unique properties of the hippocampal CA2 area.
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Affiliation(s)
- Yuki Takeuchi
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan
| | - Kotaro Yamashiro
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan
| | - Asako Noguchi
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan
| | - Jiayan Liu
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan
| | - Shinichi Mitsui
- Department of Rehabilitation Sciences, Graduate School of Health Sciences, Gunma University, Maebashi, Gunma, Japan
| | - Yuji Ikegaya
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan
- Institute for AI and Beyond, The University of Tokyo, Tokyo, Japan
- Center for Information and Neural Networks, National Institute of Information and Communications Technology, Osaka, Japan
| | - Nobuyoshi Matsumoto
- Graduate School of Pharmaceutical Sciences, The University of Tokyo, Tokyo, Japan
- Institute for AI and Beyond, The University of Tokyo, Tokyo, Japan
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Rogers FD, Bales KL. Introduction to Special Issue on Affective Science in Animals: Toward a Greater Understanding of Affective Processes in Non-Human Animals. AFFECTIVE SCIENCE 2022; 3:697-702. [PMID: 36514490 PMCID: PMC9734565 DOI: 10.1007/s42761-022-00168-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Accepted: 11/21/2022] [Indexed: 12/04/2022]
Abstract
How should we characterize the affective lives of non-human animals? There is a large body of work studying affective processes in non-human animals, yet this work is frequently overlooked. Ideas about the affective lives of animals have varied across culture and time and are reflected in literature, theology, and philosophy. Our contemporary ideas about animal affect are philosophically important within the discipline of affective science, and these ideas have consequences in several domains, including animal husbandry, conservation, and human and veterinary medicine. The articles contained within this special volume cover several levels of analysis and broad representation of species, from the non-mammalian, to rodents, to primates; but together, these articles are collectively concerned with the topic of affective processes in non-human animals.
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Affiliation(s)
- Forrest D. Rogers
- Princeton Neuroscience Institute, Princeton, NJ USA
- Department of Molecular Biology, Princeton University, Princeton, NJ USA
| | - Karen L. Bales
- Department of Psychology, University of California, Davis, CA USA
- Department of Neurobiology, Physiology, and Behavior, University of California, Davis, CA 95616 USA
- California National Primate Research Center, Davis, CA USA
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Duclot F, Liu Y, Saland SK, Wang Z, Kabbaj M. Transcriptomic analysis of paternal behaviors in prairie voles. BMC Genomics 2022; 23:679. [PMID: 36183097 PMCID: PMC9526941 DOI: 10.1186/s12864-022-08912-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Accepted: 09/22/2022] [Indexed: 11/17/2022] Open
Abstract
BACKGROUND The importance of fathers' engagement in care and its critical role in the offspring's cognitive and emotional development is now well established. Yet, little is known on the underlying neurobiology due to the lack of appropriate animal models. In the socially monogamous and bi-parental prairie vole (Microtus ochrogaster), while 60-80% of virgin males show spontaneous paternal behaviors (Paternal), others display pup-directed aggression (Attackers). Here we took advantage of this phenotypic dichotomy and used RNA-sequencing in three important brain areas to characterize gene expression associated with paternal behaviors of Paternal males and compare it to experienced Fathers and Mothers. RESULTS While Paternal males displayed the same range and extent of paternal behaviors as experienced Fathers, we observed structure-specific transcriptomic differences between parental behaviors phenotypes. Using differential expression, gene set expression, as well as co-expression network analyses, we found that phenotypic differences between Paternal males and Attackers were mainly reflected by the lateral septum (LS), and to a lower extent, the nucleus accumbens (NAc), transcriptomes. In the medial preoptic area (MPOA), the profiles of gene expression mainly reflected differences between females and males regardless of their parental behaviors phenotype. Functional enrichment analyses of those gene sets associated with Paternal males or Attackers in the LS and the NAc revealed the involvement of processes related to the mitochondria, RNA translation, protein degradation processes, as well as epigenetic regulation of gene expression. CONCLUSIONS By leveraging the natural phenotypic differences in parental behaviors in virgin male prairie voles alongside fathers and mothers, we identified a marked structure- and phenotype-specific pattern of gene expression associated with spontaneous paternal behaviors independently from fatherhood and pair-bonding. The LS transcriptome related to the mitochondria, RNA translation, and protein degradation processes was thus highlighted as a primary candidate associated with the spontaneous display of paternal behaviors. Altogether, our observations further characterize the behavioral and transcriptomic signature of parental behaviors in the socially monogamous prairie vole and lay the groundwork to further our understanding of the molecular underpinnings of paternal behavior.
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Affiliation(s)
- Florian Duclot
- Department of Biomedical Sciences, Florida State University, Tallahassee, FL, USA.
- Program in Neuroscience, Florida State University, Tallahassee, FL, USA.
| | - Yan Liu
- Program in Neuroscience, Florida State University, Tallahassee, FL, USA
- Department of Psychology, Florida State University, Tallahassee, FL, USA
| | - Samantha K Saland
- Department of Biomedical Sciences, Florida State University, Tallahassee, FL, USA
- Program in Neuroscience, Florida State University, Tallahassee, FL, USA
| | - Zuoxin Wang
- Program in Neuroscience, Florida State University, Tallahassee, FL, USA
- Department of Psychology, Florida State University, Tallahassee, FL, USA
| | - Mohamed Kabbaj
- Department of Biomedical Sciences, Florida State University, Tallahassee, FL, USA.
- Program in Neuroscience, Florida State University, Tallahassee, FL, USA.
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Mederos SL, Duarte RC, Mastoras M, Dennis MY, Settles ML, Lau AR, Scott A, Woodward K, Johnson C, Seelke AMH, Bales KL. Effects of pairing on color change and central gene expression in lined seahorses. GENES, BRAIN, AND BEHAVIOR 2022; 21:e12812. [PMID: 35652318 PMCID: PMC9744553 DOI: 10.1111/gbb.12812] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Revised: 04/21/2022] [Accepted: 04/21/2022] [Indexed: 12/18/2022]
Abstract
Social monogamy is a reproductive strategy characterized by pair living and defense of a common territory. Pair bonding, sometimes displayed by monogamous species, is an affective construct that includes preference for a specific partner, distress upon separation, and the ability of the partner to buffer against stress. Many seahorse species show a monogamous social structure in the wild, but their pair bond has not been well studied. We examined the gene expression of lined seahorses (Hippocampus erectus) during and after the process of pairing in the laboratory as well as color change (luminance), a potential form of social communication and behavioral synchrony between pair mates. When a seahorse of either sex was interacting with its pair mate, their changes in luminance ("brightness") were correlated and larger than when interacting with an opposite-sex stranger. At the conclusion of testing, subjects were euthanized, RNA was extracted from whole brains and analyzed via RNA sequencing. Changes in gene expression in paired males versus those that were unpaired included processes governing metabolic activity, hormones and cilia. Perhaps most interesting is the overlap in gene expression change induced by pairing in both male seahorses and male prairie voles, including components of hormone systems regulating reproduction. Because of our limited sample size, we consider our results and interpretations to be preliminary, and prompts for further exploration. Future studies will expand upon these findings and investigate the neuroendocrine and genetic basis of these behaviors.
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Affiliation(s)
- Sabrina L. Mederos
- Animal Behavior Graduate GroupUniversity of CaliforniaDavisCaliforniaUSA
| | - Rafael C. Duarte
- Centro de Ciências Naturais e HumanasUniversidade Federal do ABC (UFABC)Santo AndréBrazil
| | - Mira Mastoras
- Genome Center, MIND Institute, and Department of Biochemistry and Molecular MedicineUniversity of CaliforniaDavisCaliforniaUSA
| | - Megan Y. Dennis
- Genome Center, MIND Institute, and Department of Biochemistry and Molecular MedicineUniversity of CaliforniaDavisCaliforniaUSA
| | | | - Allison R. Lau
- Animal Behavior Graduate GroupUniversity of CaliforniaDavisCaliforniaUSA
- California National Primate Research CenterUniversity of CaliforniaDavisCaliforniaUSA
| | - Alexandria Scott
- California National Primate Research CenterUniversity of CaliforniaDavisCaliforniaUSA
| | - Kacie Woodward
- Campus Veterinary ServicesUniversity of CaliforniaDavisCaliforniaUSA
| | | | - Adele M. H. Seelke
- Department of Neurobiology, Physiology, and BehaviorUniversity of CaliforniaDavisCaliforniaUSA
- Department of PsychologyUniversity of CaliforniaDavisCaliforniaUSA
| | - Karen L. Bales
- California National Primate Research CenterUniversity of CaliforniaDavisCaliforniaUSA
- Department of Neurobiology, Physiology, and BehaviorUniversity of CaliforniaDavisCaliforniaUSA
- Department of PsychologyUniversity of CaliforniaDavisCaliforniaUSA
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Horrell ND, Acosta MC, Saltzman W. Plasticity of the paternal brain: Effects of fatherhood on neural structure and function. Dev Psychobiol 2021; 63:1499-1520. [PMID: 33480062 PMCID: PMC8295408 DOI: 10.1002/dev.22097] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2020] [Revised: 12/14/2020] [Accepted: 12/23/2020] [Indexed: 12/12/2022]
Abstract
Care of infants is a hallmark of mammals. Whereas parental care by mothers is obligatory for offspring survival in virtually all mammals, fathers provide care for their offspring in only an estimated 5%-10% of genera. In these species, the transition into fatherhood is often accompanied by pronounced changes in males' behavioral responses to young, including a reduction in aggression toward infants and an increase in nurturant behavior. The onset of fatherhood can also be associated with sensory, affective, and cognitive changes. The neuroplasticity that mediates these changes is not well understood; however, fatherhood can alter the production and survival of new neurons; function and structure of existing neurons; morphology of brain structures; and neuroendocrine signaling systems. Although these changes are thought to promote infant care by fathers, very little evidence exists to support this hypothesis; in most cases, neither the mechanisms underlying neuroplasticity in fathers nor its functional significance is known. In this paper, we review the available data on the neuroplasticity that occurs during the transition into fatherhood. We highlight gaps in our knowledge and future directions that will provide key insights into how and why fatherhood alters the structure and functioning of the male brain.
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Affiliation(s)
| | - Melina C. Acosta
- Graduate Program in Neuroscience and Department of Evolution, Ecology, and Organismal Biology, University of California, Riverside, CA USA
| | - Wendy Saltzman
- Graduate Program in Neuroscience and Department of Evolution, Ecology, and Organismal Biology, University of California, Riverside, CA USA
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Rogers FD, Bales KL. Mothers, Fathers, and Others: Neural Substrates of Parental Care. Trends Neurosci 2019; 42:552-562. [PMID: 31255381 PMCID: PMC6660995 DOI: 10.1016/j.tins.2019.05.008] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2019] [Revised: 04/29/2019] [Accepted: 05/23/2019] [Indexed: 12/29/2022]
Abstract
Parental care is essential for the survival of offspring in altricial mammalian species. However, in most mammals, virgin females tend to avoid or attack infants. Moreover, most males demonstrate avoidance and aggression toward infants, and have little to no involvement in parental care. What mechanisms suppress avoidance, and support approach towards pups, to promote maternal care? In biparental and cooperatively breeding species, what mechanisms allow nonmothers (i.e., fathers and alloparents) to demonstrate parental care? In this review we consider the mechanisms that subserve parental care in mothers, fathers, and others (i.e., alloparents). We emphasize recent discoveries and research trends with particular emphasis on neuroendocrinology, neuroplasticity, transcriptomics, and epigenetics. Finally, we consider outstanding questions and outline opportunities for future research.
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Affiliation(s)
- Forrest Dylan Rogers
- Graduate Program in Psychology, University of California, Davis, CA 95616, USA; Department of Psychology, University of California, Davis, CA 95616, USA
| | - Karen Lisa Bales
- Department of Psychology, University of California, Davis, CA 95616, USA; California National Primate Research Center, Davis, CA 95616, USA.
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