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Gokul JK, Mur LAJ, Hodson AJ, Irvine-Fynn TDL, Debbonaire AR, Takeuchi N, Edwards A. Icescape-scale metabolomics reveals cyanobacterial and topographic control of the core metabolism of the cryoconite ecosystem of an Arctic ice cap. Environ Microbiol 2023; 25:2549-2563. [PMID: 37621052 DOI: 10.1111/1462-2920.16485] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 08/06/2023] [Indexed: 08/26/2023]
Abstract
Glaciers host ecosystems comprised of biodiverse and active microbiota. Among glacial ecosystems, less is known about the ecology of ice caps since most studies focus on valley glaciers or ice sheet margins. Previously we detailed the microbiota of one such high Arctic ice cap, focusing on cryoconite as a microbe-mineral aggregate formed by cyanobacteria. Here, we employ metabolomics at the scale of an entire ice cap to reveal the major metabolic pathways prevailing in the cryoconite of Foxfonna, central Svalbard. We reveal how geophysical and biotic processes influence the metabolomes of its resident cryoconite microbiota. We observed differences in amino acid, fatty acid, and nucleotide synthesis across the cap reflecting the influence of ice topography and the cyanobacteria within cryoconite. Ice topography influences central carbohydrate metabolism and nitrogen assimilation, whereas bacterial community structure governs lipid, nucleotide, and carotenoid biosynthesis processes. The prominence of polyamine metabolism and nitrogen assimilation highlights the importance of recycling nitrogenous nutrients. To our knowledge, this study represents the first application of metabolomics across an entire ice mass, demonstrating its utility as a tool for revealing the fundamental metabolic processes essential for sustaining life in supraglacial ecosystems experiencing profound change due to Arctic climate change-driven mass loss.
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Affiliation(s)
- Jarishma K Gokul
- Department of Life Sciences, Cledwyn Building, Aberystwyth University, Wales, UK
- Department of Plant and Soil Sciences, University of Pretoria, Pretoria, South Africa
| | - Luis A J Mur
- Department of Life Sciences, Cledwyn Building, Aberystwyth University, Wales, UK
| | - Andrew J Hodson
- Department of Arctic Geology, University Centre in Svalbard (UNIS), Longyearbyen, Svalbard, Norway
- Department of Environmental Sciences, Western Norway University of Environmental Science, Sogndal, Norway
| | | | - Aliyah R Debbonaire
- Department of Life Sciences, Cledwyn Building, Aberystwyth University, Wales, UK
| | - Nozomu Takeuchi
- Department of Earth Sciences, Graduate School of Science, Chiba University, Chiba, Japan
| | - Arwyn Edwards
- Department of Life Sciences, Cledwyn Building, Aberystwyth University, Wales, UK
- Department of Arctic Biology, University Centre in Svalbard (UNIS), Longyearbyen, Svalbard, Norway
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2
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Jaarsma AH, Sipes K, Zervas A, Jiménez FC, Ellegaard-Jensen L, Thøgersen MS, Stougaard P, Benning LG, Tranter M, Anesio AM. Exploring microbial diversity in Greenland Ice Sheet supraglacial habitats through culturing-dependent and -independent approaches. FEMS Microbiol Ecol 2023; 99:fiad119. [PMID: 37791411 PMCID: PMC10580271 DOI: 10.1093/femsec/fiad119] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Revised: 08/22/2023] [Accepted: 09/28/2023] [Indexed: 10/05/2023] Open
Abstract
The microbiome of Greenland Ice Sheet supraglacial habitats is still underinvestigated, and as a result there is a lack of representative genomes from these environments. In this study, we investigated the supraglacial microbiome through a combination of culturing-dependent and -independent approaches. We explored ice, cryoconite, biofilm, and snow biodiversity to answer: (1) how microbial diversity differs between supraglacial habitats, (2) if obtained bacterial genomes reflect dominant community members, and (3) how culturing versus high throughput sequencing changes our observations of microbial diversity in supraglacial habitats. Genomes acquired through metagenomic sequencing (133 high-quality MAGs) and whole genome sequencing (73 bacterial isolates) were compared to the metagenome assemblies to investigate abundance within the total environmental DNA. Isolates obtained in this study were not dominant taxa in the habitat they were sampled from, in contrast to the obtained MAGs. We demonstrate here the advantages of using metagenome SSU rRNA genes to reflect whole-community diversity. Additionally, we demonstrate a proof-of-concept of the application of in situ culturing in a supraglacial setting.
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Affiliation(s)
- Ate H Jaarsma
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark
| | - Katie Sipes
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark
| | - Athanasios Zervas
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark
| | | | - Lea Ellegaard-Jensen
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark
| | - Mariane S Thøgersen
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark
| | - Peter Stougaard
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark
| | - Liane G Benning
- German Research Centre for Geosciences, Helmholtz Centre Potsdam, Telegrafenberg, 14473 Potsdam, Germany
- Department of Earth Sciences, Freie Universität Berlin, Malteserstr. 74-100, 12249 Berlin, Germany
| | - Martyn Tranter
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark
| | - Alexandre M Anesio
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, 4000 Roskilde, Denmark
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3
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Keuschnig C, Vogel TM, Barbaro E, Spolaor A, Koziol K, Björkman MP, Zdanowicz C, Gallet JC, Luks B, Layton R, Larose C. Selection processes of Arctic seasonal glacier snowpack bacterial communities. MICROBIOME 2023; 11:35. [PMID: 36864462 PMCID: PMC9979512 DOI: 10.1186/s40168-023-01473-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/15/2022] [Accepted: 01/24/2023] [Indexed: 06/18/2023]
Abstract
BACKGROUND Arctic snowpack microbial communities are continually subject to dynamic chemical and microbial input from the atmosphere. As such, the factors that contribute to structuring their microbial communities are complex and have yet to be completely resolved. These snowpack communities can be used to evaluate whether they fit niche-based or neutral assembly theories. METHODS We sampled snow from 22 glacier sites on 7 glaciers across Svalbard in April during the maximum snow accumulation period and prior to the melt period to evaluate the factors that drive snowpack metataxonomy. These snowpacks were seasonal, accumulating in early winter on bare ice and firn and completely melting out in autumn. Using a Bayesian fitting strategy to evaluate Hubbell's Unified Neutral Theory of Biodiversity at multiple sites, we tested for neutrality and defined immigration rates at different taxonomic levels. Bacterial abundance and diversity were measured and the amount of potential ice-nucleating bacteria was calculated. The chemical composition (anions, cations, organic acids) and particulate impurity load (elemental and organic carbon) of the winter and spring snowpack were also characterized. We used these data in addition to geographical information to assess possible niche-based effects on snow microbial communities using multivariate and variable partitioning analysis. RESULTS While certain taxonomic signals were found to fit the neutral assembly model, clear evidence of niche-based selection was observed at most sites. Inorganic chemistry was not linked directly to diversity, but helped to identify predominant colonization sources and predict microbial abundance, which was tightly linked to sea spray. Organic acids were the most significant predictors of microbial diversity. At low organic acid concentrations, the snow microbial structure represented the seeding community closely, and evolved away from it at higher organic acid concentrations, with concomitant increases in bacterial numbers. CONCLUSIONS These results indicate that environmental selection plays a significant role in structuring snow microbial communities and that future studies should focus on activity and growth. Video Abstract.
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Affiliation(s)
- Christoph Keuschnig
- Formerly at Univ Lyon, CNRS, INSA Lyon, Université Claude Bernard Lyon 1, Ecole Centrale de Lyon, Ampère, UMR5005, 69134, Ecully Cedex, France
- Currently at Interface Geochemistry, German Research Center for Geosciences, GFZ, Potsdam, Germany
| | - Timothy M Vogel
- Univ Lyon, CNRS, INSA Lyon, Université Claude Bernard Lyon 1, Ecole Centrale de Lyon, Ampère, UMR5005, 69134, Ecully Cedex, France
| | - Elena Barbaro
- Institute of Polar Sciences, ISP-CNR, Via Torino 155, 30170, Venice Mestre, Italy
- Department of Environmental Sciences, Informatics and Statistics, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy
| | - Andrea Spolaor
- Institute of Polar Sciences, ISP-CNR, Via Torino 155, 30170, Venice Mestre, Italy
- Department of Environmental Sciences, Informatics and Statistics, Ca' Foscari University of Venice, Via Torino 155, 30172, Venice, Italy
| | - Krystyna Koziol
- Department of Environmental Change and Geochemistry, Faculty of Geographical Sciences, the Kazimierz Wielki University in Bydgoszcz, Bydgoszcz, Poland
| | - Mats P Björkman
- Department of Earth Sciences, University of Gothenburg, Box 460, SE-40530, Gothenburg, Sweden
| | - Christian Zdanowicz
- Department of Earth Sciences, Uppsala University, Villavägen 16, SE-75236, Uppsala, Sweden
| | | | - Bartłomiej Luks
- Institute of Geophysics, Polish Academy of Sciences, Księcia Janusza 64, 01-452, Warsaw, Poland
| | - Rose Layton
- Formerly at Univ Lyon, CNRS, INSA Lyon, Université Claude Bernard Lyon 1, Ecole Centrale de Lyon, Ampère, UMR5005, 69134, Ecully Cedex, France
| | - Catherine Larose
- Univ Lyon, CNRS, INSA Lyon, Université Claude Bernard Lyon 1, Ecole Centrale de Lyon, Ampère, UMR5005, 69134, Ecully Cedex, France.
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4
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Cultivable bacteria in the supraglacial lake formed after a glacial lake outburst flood in northern Pakistan. Int Microbiol 2022; 26:309-325. [PMID: 36484912 DOI: 10.1007/s10123-022-00306-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2022] [Revised: 11/24/2022] [Accepted: 11/29/2022] [Indexed: 12/14/2022]
Abstract
Recently, a supraglacial lake formed as a result of a glacial lake outburst flood (GLOF) in the Dook Pal Glacier. Lake debris and meltwater samples were collected from the supraglacial lake to determine bacterial diversity. Geochemical analyses of samples showed free amino acids (FAAs), anions, cations, and heavy metals. Comparable viable bacterial counts were observed in meltwater and debris samples. Using R2A media, a total of 52 bacterial isolates were identified: 40 from debris and 12 from meltwater. The relative abundance of Gram-positive (80.8%) bacteria was greater than Gram-negative (19.2%). Molecular identification of these isolates revealed that meltwater was dominated by Firmicutes (41.6%) and Proteobacteria (41.6%), while lake debris was dominated by Firmicutes (65.0%). The isolates belonged to 14 genera with the greatest relative abundance in Bacillus. Tolerance level of isolates to salts was high. Most of the Gram-positive bacteria were eurypsychrophiles, while most of the Gram-negative bacteria were stenopsychrophiles. Gram-negative bacteria displayed a higher minimum inhibitory concentration of selected heavy metals and antibiotics than Gram-positive. This first-ever study of culturable bacteria from a freshly formed supraglacial lake improves our understanding of the bacterial diversity and antibiotic resistance released from the glaciers as a result of GLOF.
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5
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de Maria YNLF, Aciole Barbosa D, Menegidio FB, Santos KBNH, Humberto AC, Alencar VC, Silva JFS, Costa de Oliveira R, Batista ML, Nunes LR, Jabes DL. Analysis of mouse faecal dysbiosis, during the development of cachexia, induced by transplantation with Lewis lung carcinoma cells. MICROBIOLOGY (READING, ENGLAND) 2021; 167. [PMID: 34596506 DOI: 10.1099/mic.0.001088] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Cachexia (CC) is a complex wasting syndrome that significantly affects life quality and life expectancy among cancer patients. Original studies, in which CC was induced in mouse models through inoculation with BaF and C26 tumour cells, demonstrated that CC development correlates with bacterial gut dysbiosis in these animals. In both cases, a common microbial signature was observed, based on the expansion of Enterobacteriaceae in the gut of CC animals. However, these two types of tumours induce unique microbial profiles, suggesting that different CC induction mechanisms significantly impact the outcome of gut dysbiosis. The present study sought to expand the scope of such analyses by characterizing the CC-associated dysbiosis that develops when mice are inoculated with Lewis lung carcinoma (LLC) cells, which constitutes one of the most widely employed mechanisms for CC induction. Interestingly, Enterobacteriaceae expansion is also observed in LLC-induced CC. However, the dysbiosis identified herein displays a more complex pattern, involving representatives from seven different bacterial phyla, which were consistently identified across successive levels of taxonomic hierarchy. These results are supported by a predictive analysis of gene content, which identified a series of functional/structural changes that potentially occur in the gut bacterial population of these animals, providing a complementary and alternative approach to microbiome analyses based solely on taxonomic classification.
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Affiliation(s)
- Yara N L F de Maria
- Núcleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Brazil
| | - David Aciole Barbosa
- Núcleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Brazil
| | - Fabiano B Menegidio
- Núcleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Brazil
| | | | | | - Valquíria C Alencar
- Núcleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Brazil
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), Brazil
| | - Juliana F S Silva
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), Brazil
| | | | - Miguel L Batista
- Núcleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Brazil
- Department of Biochemistry, Boston University School of Medicine, USA
| | - Luiz R Nunes
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC (UFABC), Brazil
| | - Daniela L Jabes
- Núcleo Integrado de Biotecnologia, Universidade de Mogi das Cruzes (UMC), Brazil
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6
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Park C, Takeuchi N. Unmasking photogranulation in decreasing glacial albedo and net autotrophic wastewater treatment. Environ Microbiol 2021; 23:6391-6404. [PMID: 34545673 PMCID: PMC9292683 DOI: 10.1111/1462-2920.15780] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2021] [Revised: 09/13/2021] [Accepted: 09/16/2021] [Indexed: 11/29/2022]
Abstract
In both natural and built environments, microbes on occasions manifest in spherical aggregates instead of substratum‐affixed biofilms. These microbial aggregates are conventionally referred to as granules. Cryoconites are mineral rich granules that appear on glacier surfaces and are linked with expanding surface darkening, thus decreasing albedo, and enhanced melt. The oxygenic photogranules (OPGs) are organic rich granules that grow in wastewater, which enables wastewater treatment with photosynthetically produced oxygen and which presents potential for net autotrophic wastewater treatment in a compact system. Despite obvious differences inherent in the two, cryoconite and OPG pose striking resemblance. In both, the order Oscillatoriales in Cyanobacteria envelope inner materials and develop dense spheroidal aggregates. We explore the mechanism of photogranulation on account of high similarity between cryoconites and OPGs. We contend that there is no universal external cause for photogranulation. However, cryoconites and OPGs, as well as their intravariations, which are all under different stress fields, are the outcome of universal physiological processes of the Oscillatoriales interfacing with goldilocks interactions of stresses. Finding the rules of photogranulation may enhance engineering of glacier and wastewater systems to manipulate their ecosystem impacts.
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Affiliation(s)
- Chul Park
- Department of Civil and Environmental Engineering, University of Massachusetts Amherst, Amherst, Massachusetts, 01003, USA
| | - Nozomu Takeuchi
- Department of Earth Sciences, Graduate School of Science, Chiba University, Chiba, 263-8522, Japan
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7
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Irvine-Fynn TDL, Edwards A, Stevens IT, Mitchell AC, Bunting P, Box JE, Cameron KA, Cook JM, Naegeli K, Rassner SME, Ryan JC, Stibal M, Williamson CJ, Hubbard A. Storage and export of microbial biomass across the western Greenland Ice Sheet. Nat Commun 2021; 12:3960. [PMID: 34172727 PMCID: PMC8233322 DOI: 10.1038/s41467-021-24040-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2020] [Accepted: 05/21/2021] [Indexed: 11/23/2022] Open
Abstract
The Greenland Ice Sheet harbours a wealth of microbial life, yet the total biomass stored or exported from its surface to downstream environments is unconstrained. Here, we quantify microbial abundance and cellular biomass flux within the near-surface weathering crust photic zone of the western sector of the ice sheet. Using groundwater techniques, we demonstrate that interstitial water flow is slow (~10−2 m d−1), while flow cytometry enumeration reveals this pathway delivers 5 × 108 cells m−2 d−1 to supraglacial streams, equivalent to a carbon flux up to 250 g km−2 d−1. We infer that cellular carbon accumulation in the weathering crust exceeds fluvial export, promoting biomass sequestration, enhanced carbon cycling, and biological albedo reduction. We estimate that up to 37 kg km−2 of cellular carbon is flushed from the weathering crust environment of the western Greenland Ice Sheet each summer, providing an appreciable flux to support heterotrophs and methanogenesis at the bed. Microbes that colonise ice sheet surfaces are important to the carbon cycle, but their biomass and transport remains unquantified. Here, the authors reveal substantial microbial carbon fluxes across Greenland’s ice surface, in quantities that may sustain subglacial heterotrophs and fuel methanogenesis.
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Affiliation(s)
- T D L Irvine-Fynn
- Department of Geography and Earth Sciences, Aberystwyth University, Aberystwyth, UK.
| | - A Edwards
- Institute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, UK
| | - I T Stevens
- Department of Geography and Earth Sciences, Aberystwyth University, Aberystwyth, UK.,School of Geography, Politics and Sociology, Newcastle University, Newcastle-upon-Tyne, UK.,Department of Environmental Science, Aarhus University, Frederiksborgvej, Roskilde, Denmark
| | - A C Mitchell
- Department of Geography and Earth Sciences, Aberystwyth University, Aberystwyth, UK
| | - P Bunting
- Department of Geography and Earth Sciences, Aberystwyth University, Aberystwyth, UK
| | - J E Box
- Department of Glaciology and Climate, Geological Survey of Denmark and Greenland, Copenhagen, Denmark
| | - K A Cameron
- Institute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, UK.,Department of Glaciology and Climate, Geological Survey of Denmark and Greenland, Copenhagen, Denmark.,School of Geographical and Earth Sciences, University of Glasgow, Glasgow, UK
| | - J M Cook
- Institute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, UK.,Department of Environmental Science, Aarhus University, Frederiksborgvej, Roskilde, Denmark.,Department of Geography, University of Sheffield, Sheffield, UK
| | - K Naegeli
- Department of Geography and Earth Sciences, Aberystwyth University, Aberystwyth, UK.,Institute of Geography and Oeschger Center for Climate Change Research, University of Bern, Bern, Switzerland
| | - S M E Rassner
- Institute of Biological Environmental and Rural Sciences, Aberystwyth University, Aberystwyth, UK
| | - J C Ryan
- Institute at Brown for Environment and Society, Brown University, Providence, RI, USA
| | - M Stibal
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
| | - C J Williamson
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, Bristol, UK
| | - A Hubbard
- Centre for Gas Hydrate, Environment and Climate, Department of Geosciences, UiT-The Arctic University of Norway, Tromsø, Norway.,Geography Research Unit, University of Oulu, Oulu, Finland
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8
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Bacterial and archaeal community structure in benthic sediments from glacial lakes at the Múlajökull Glacier, central Iceland. Polar Biol 2020. [DOI: 10.1007/s00300-020-02770-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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9
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Zhu C, Miller M, Lusskin N, Bergk Pinto B, Maccario L, Häggblom M, Vogel T, Larose C, Bromberg Y. Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds. Microbiologyopen 2020; 9:e1100. [PMID: 32762019 PMCID: PMC7520998 DOI: 10.1002/mbo3.1100] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Revised: 05/19/2020] [Accepted: 05/29/2020] [Indexed: 12/17/2022] Open
Abstract
Microbes active in extreme cold are not as well explored as those of other extreme environments. Studies have revealed a substantial microbial diversity and identified cold-specific microbiome molecular functions. We analyzed the metagenomes and metatranscriptomes of 20 snow samples collected in early and late spring in Svalbard, Norway using mi-faser, our read-based computational microbiome function annotation tool. Our results reveal a more diverse microbiome functional capacity and activity in the early- vs. late-spring samples. We also find that functional dissimilarity between the same-sample metagenomes and metatranscriptomes is significantly higher in early than late spring samples. These findings suggest that early spring samples may contain a larger fraction of DNA of dormant (or dead) organisms, while late spring samples reflect a new, metabolically active community. We further show that the abundance of sequencing reads mapping to the fatty acid synthesis-related microbial pathways in late spring metagenomes and metatranscriptomes is significantly correlated with the organic acid levels measured in these samples. Similarly, the organic acid levels correlate with the pathway read abundances of geraniol degradation and inversely correlate with those of styrene degradation, suggesting a possible nutrient change. Our study thus highlights the activity of microbial degradation pathways of complex organic compounds previously unreported at low temperatures.
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Affiliation(s)
- Chengsheng Zhu
- Department of Biochemistry and MicrobiologyRutgers UniversityNew BrunswickNJUSA
| | - Maximilian Miller
- Department of Biochemistry and MicrobiologyRutgers UniversityNew BrunswickNJUSA
| | - Nicholas Lusskin
- Department of Biochemistry and MicrobiologyRutgers UniversityNew BrunswickNJUSA
| | - Benoît Bergk Pinto
- Environmental Microbial GenomicsLaboratoire AmpereEcole Centrale de LyonCNRS UMR 5005Université de LyonEcullyFrance
| | - Lorrie Maccario
- Environmental Microbial GenomicsLaboratoire AmpereEcole Centrale de LyonCNRS UMR 5005Université de LyonEcullyFrance
- Section of MicrobiologyCopenhagen UniversityCopenhagen ØDenmark
| | - Max Häggblom
- Department of Biochemistry and MicrobiologyRutgers UniversityNew BrunswickNJUSA
| | - Timothy Vogel
- Environmental Microbial GenomicsLaboratoire AmpereEcole Centrale de LyonCNRS UMR 5005Université de LyonEcullyFrance
| | - Catherine Larose
- Environmental Microbial GenomicsLaboratoire AmpereEcole Centrale de LyonCNRS UMR 5005Université de LyonEcullyFrance
| | - Yana Bromberg
- Department of Biochemistry and MicrobiologyRutgers UniversityNew BrunswickNJUSA
- Department of GeneticsHuman Genetics InstituteRutgers UniversityPiscatawayNJUSA
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10
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Contrasting Patterns of Microbial Communities in Glacier Cryoconite of Nepali Himalaya and Greenland, Arctic. SUSTAINABILITY 2020. [DOI: 10.3390/su12166477] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
To understand the microbial composition and diversity patterns, cryoconite granules were collected from two geographical areas, i.e., Nepali Himalaya and Greenland, Arctic. 16S rRNA, ITS and the D1/D2 domain sequencing techniques were used for characterization of microbial communities of the four glaciers. The total 13 species of bacteria such as Bacillus aryabhattai, Bacillus simplex, Brevundimonas vesicularis, Cryobacterium luteum, Cryobacterium psychrotolerans, Dermacoccus nishinomiyaensis, Glaciihabitans tibetensis, Leifsonia kafniensis, Paracoccus limosus, Polaromonas glacialis, Sporosarcina globispora, Staphylococcus saprophyticus, Variovorax ginsengisoli, and 4 species of fungi such as Goffeauzyma gilvescens, Mrakia robertii, Dothideomycetes sp., Helotiales sp. were recorded from Nepali Himalaya. Among these, 12 species of bacteria and 4 species of fungi are new contributions to Himalaya. In contrast to this, six species of bacteria such as Bacillus cereus, Cryobacterium psychrotolerans, Dermacoccus nishinomiyaensis, Enhydrobacter aerosaccus, Glaciihabitans tibetensis, Subtercola frigoramans, and nine species of fungi such as Goffeauzyma gilvescens, Mrakia robertii, Naganishia vaughanmartiniae, Piskurozyma fildesensis, Rhodotorula svalbardensis, Alatospora acuminata, Articulospora sp., Phialophora sp., Thelebolus microspores, and Dothideomycetes sp.), were recorded from Qaanaaq, Isunnguata Sermia and Thule glaciers, Greenland. Among these, five species of bacteria and seven species of fungi are new contributions to Greenland cryoconite. Microbial analyses indicate that the Nepali Himalayan cryoconite colonize higher numbers of microbial species compared to the Greenland cryoconite.
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11
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Cameron KA, Müller O, Stibal M, Edwards A, Jacobsen CS. Glacial microbiota are hydrologically connected and temporally variable. Environ Microbiol 2020; 22:3172-3187. [PMID: 32383292 DOI: 10.1111/1462-2920.15059] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Revised: 04/15/2020] [Accepted: 05/02/2020] [Indexed: 11/29/2022]
Abstract
Glaciers are melting rapidly. The concurrent export of microbial assemblages alongside glacial meltwater is expected to impact the ecology of adjoining ecosystems. Currently, the source of exported assemblages is poorly understood, yet this information may be critical for understanding how current and future glacial melt seasons may influence downstream environments. We report on the connectivity and temporal variability of microbiota sampled from supraglacial, subglacial and periglacial habitats and water bodies within a glacial catchment. Sampled assemblages showed evidence of being biologically connected through hydrological flowpaths, leading to a meltwater system that accumulates prokaryotic biota as it travels downstream. Temporal changes in the connected assemblages were similarly observed. Snow assemblages changed markedly throughout the sample period, likely reflecting changes in the surrounding environment. Changes in supraglacial meltwater assemblages reflected the transition of the glacial surface from snow-covered to bare-ice. Marked snowmelt across the surrounding periglacial environment resulted in the flushing of soil assemblages into the riverine system. In contrast, surface ice within the ablation zone and subglacial meltwaters remained relatively stable throughout the sample period. Our results are indicative that changes in snow and ice melt across glacial environments will influence the abundance and diversity of microbial assemblages transported downstream.
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Affiliation(s)
- Karen A Cameron
- Institute of Biological, Rural and Environmental Sciences (IBERS), Aberystwyth University, Aberystwyth, SY23 3DD, UK.,Center for Permafrost (CENPERM), University of Copenhagen, Copenhagen, 1350, Denmark.,Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Copenhagen, 1350, Denmark.,School of Geographical and Earth Sciences, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Oliver Müller
- Department of Biological Sciences, University of Bergen, Bergen, 5006, Norway
| | - Marek Stibal
- Center for Permafrost (CENPERM), University of Copenhagen, Copenhagen, 1350, Denmark.,Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Copenhagen, 1350, Denmark.,Department of Ecology, Faculty of Science, Charles University, Prague, 128 44, Czech Republic
| | - Arwyn Edwards
- Institute of Biological, Rural and Environmental Sciences (IBERS), Aberystwyth University, Aberystwyth, SY23 3DD, UK
| | - Carsten Suhr Jacobsen
- Center for Permafrost (CENPERM), University of Copenhagen, Copenhagen, 1350, Denmark.,Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Copenhagen, 1350, Denmark.,Department of Environmental Science, Aarhus University, Roskilde, 4000, Denmark
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12
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Kohler TJ, Vinšová P, Falteisek L, Žárský JD, Yde JC, Hatton JE, Hawkings JR, Lamarche-Gagnon G, Hood E, Cameron KA, Stibal M. Patterns in Microbial Assemblages Exported From the Meltwater of Arctic and Sub-Arctic Glaciers. Front Microbiol 2020; 11:669. [PMID: 32351489 PMCID: PMC7174618 DOI: 10.3389/fmicb.2020.00669] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2019] [Accepted: 03/24/2020] [Indexed: 01/14/2023] Open
Abstract
Meltwater streams connect the glacial cryosphere with downstream ecosystems. Dissolved and particulate matter exported from glacial ecosystems originates from contrasting supraglacial and subglacial environments, and exported microbial cells have the potential to serve as ecological and hydrological indicators for glacial ecosystem processes. Here, we compare exported microbial assemblages from the meltwater of 24 glaciers from six (sub)Arctic regions – the southwestern Greenland Ice Sheet, Qeqertarsuaq (Disko Island) in west Greenland, Iceland, Svalbard, western Norway, and southeast Alaska – differing in their lithology, catchment size, and climatic characteristics, to investigate spatial and environmental factors structuring exported meltwater assemblages. We found that 16S rRNA gene sequences of all samples were dominated by the phyla Proteobacteria, Bacteroidetes, and Actinobacteria, with Verrucomicrobia also common in Greenland localities. Clustered OTUs were largely composed of aerobic and anaerobic heterotrophs capable of degrading a wide variety of carbon substrates. A small number of OTUs dominated all assemblages, with the most abundant being from the genera Polaromonas, Methylophilus, and Nitrotoga. However, 16–32% of a region’s OTUs were unique to that region, and rare taxa revealed unique metabolic potentials and reflected differences between regions, such as the elevated relative abundances of sulfur oxidizers Sulfuricurvum sp. and Thiobacillus sp. at Svalbard sites. Meltwater alpha diversity showed a pronounced decrease with increasing latitude, and multivariate analyses of assemblages revealed significant regional clusters. Distance-based redundancy and correlation analyses further resolved associations between whole assemblages and individual OTUs with variables primarily corresponding with the sampled regions. Interestingly, some OTUs indicating specific metabolic processes were not strongly associated with corresponding meltwater characteristics (e.g., nitrification and inorganic nitrogen concentrations). Thus, while exported assemblage structure appears regionally specific, and probably reflects differences in dominant hydrological flowpaths, OTUs can also serve as indicators for more localized microbially mediated processes not captured by the traditional characterization of bulk meltwater hydrochemistry. These results collectively promote a better understanding of microbial distributions across the Arctic, as well as linkages between the terrestrial cryosphere habitats and downstream ecosystems.
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Affiliation(s)
- Tyler J Kohler
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia.,Stream Biofilm and Ecosystem Research Laboratory, School of Architecture, Civil and Environmental Engineering, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Petra Vinšová
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
| | - Lukáš Falteisek
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
| | - Jakub D Žárský
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
| | - Jacob C Yde
- Department of Environmental Sciences, Western Norway University of Applied Sciences, Sogndal, Norway
| | - Jade E Hatton
- School of Earth Sciences, University of Bristol, Bristol, United Kingdom
| | - Jon R Hawkings
- National High Magnetic Field Laboratory, Department of Earth, Ocean & Atmospheric Science, Florida State University, Tallahassee, FL, United States.,GFZ German Research Centre for Geosciences, Potsdam, Germany
| | | | - Eran Hood
- Department of Natural Sciences, University of Alaska Southeast, Juneau, AK, United States
| | - Karen A Cameron
- Institute of Biological, Environmental and Rural Sciences, Faculty of Earth and Life Sciences, Aberystwyth University, Aberystwyth, United Kingdom
| | - Marek Stibal
- Department of Ecology, Faculty of Science, Charles University, Prague, Czechia
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13
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Nicholes MJ, Williamson CJ, Tranter M, Holland A, Poniecka E, Yallop ML, Anesio A. Bacterial Dynamics in Supraglacial Habitats of the Greenland Ice Sheet. Front Microbiol 2019; 10:1366. [PMID: 31333595 PMCID: PMC6616251 DOI: 10.3389/fmicb.2019.01366] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Accepted: 05/31/2019] [Indexed: 11/13/2022] Open
Abstract
Current research into bacterial dynamics on the Greenland Ice Sheet (GrIS) is biased toward cryoconite holes, despite this habitat covering less than 8% of the ablation (melt) zone surface. In contrast, the expansive surface ice, which supports wide-spread Streptophyte micro-algal blooms thought to enhance surface melt, has been relatively neglected. This study aims to understand variability in bacterial abundance and production across an ablation season on the GrIS, in relation to micro-algal bloom dynamics. Bacterial abundance reached 3.3 ± 0.3 × 105 cells ml−1 in surface ice and was significantly linearly related to algal abundances during the middle and late ablation periods (R2 = 0.62, p < 0.05; R2 = 0.78, p < 0.001). Bacterial production (BP) of 0.03–0.6 μg C L−1 h−1 was observed in surface ice and increased in concert with glacier algal abundances, indicating that heterotrophic bacteria consume algal-derived dissolved organic carbon. However, BP remained at least 28 times lower than net primary production, indicating inefficient carbon cycling by heterotrophic bacteria and net accumulation of carbon in surface ice throughout the ablation season. Across the supraglacial environment, cryoconite sediment BP was at least four times greater than surface ice, confirming that cryoconite holes are the true “hot spots” of heterotrophic bacterial activity.
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Affiliation(s)
- Miranda Jane Nicholes
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, Bristol, United Kingdom
| | - Christopher James Williamson
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, Bristol, United Kingdom.,School of Biological Sciences, University of Bristol, Bristol, United Kingdom
| | - Martyn Tranter
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, Bristol, United Kingdom
| | - Alexandra Holland
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, Bristol, United Kingdom
| | - Ewa Poniecka
- School of Earth and Ocean Sciences, Cardiff University, Cardiff, United Kingdom
| | - Marian Louise Yallop
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, Bristol, United Kingdom.,School of Biological Sciences, University of Bristol, Bristol, United Kingdom
| | | | - Alexandre Anesio
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, Bristol, United Kingdom.,Department of Environmental Science, Aarhus University, Roskilde, Denmark
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14
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Weisleitner K, Perras A, Moissl-Eichinger C, Andersen DT, Sattler B. Source Environments of the Microbiome in Perennially Ice-Covered Lake Untersee, Antarctica. Front Microbiol 2019; 10:1019. [PMID: 31134036 PMCID: PMC6524460 DOI: 10.3389/fmicb.2019.01019] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Accepted: 04/24/2019] [Indexed: 11/13/2022] Open
Abstract
Ultra-oligotrophic Lake Untersee is among the largest and deepest surface lakes of Central Queen Maud Land in East Antarctica. It is dammed at its north end by the Anuchin Glacier and the ice-cover dynamics are controlled by sublimation - not melt - as the dominating ablation process and therefore surface melt during austral summer does not provide significant amounts of water for recharge compared to subsurface melt of the Anuchin Glacier. Several studies have already described the structure and function of the microbial communities within the water column and benthic environments of Lake Untersee, however, thus far there have been no studies that examine the linkages between the lake ecosystem with that of the surrounding soils or the Anuchin Glacier. The glacier may also play an important role as a major contributor of nutrients and biota into the lake ecosystem. Based on microbial 16S rRNA amplicon sequencing, we showed that the dominant bacterial signatures in Lake Untersee, the Anuchin Glacier and its surrounding soils were affiliated with Actinobacteria, Bacteroidetes, Cyanobacteria, Firmicutes, and Proteobacteria. Aerosol and local soil depositions on the glacier surface resulted in distinct microbial communities developing in glacier ice and cryoconite holes. Based on a source tracking algorithm, we found that cryoconite microbial assemblages were a potential source of organisms, explaining up to 36% of benthic microbial mat communities in the lake. However, the major biotic sources for the lake ecosystem are still unknown, illustrating the possible importance of englacial and subglacial zones. The Anuchin Glacier may be considered as a vector in a biological sense for the bacterial colonization of the perennially ice-covered Lake Untersee. However, despite a thick perennial ice cover, observed "lift-off" microbial mats escaping the lake make a bidirectional transfer of biota plausible. Hence, there is an exchange of biota between Lake Untersee and connective habitats possible despite the apparent sealing by a perennial ice cover and the absence of moat areas during austral summer.
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Affiliation(s)
- Klemens Weisleitner
- Institute of Ecology, University of Innsbruck, Innsbruck, Austria
- Austrian Polar Research Institute, Vienna, Austria
| | - Alexandra Perras
- Center for Medical Research (ZMF), Medical University of Graz, Graz, Austria
| | - Christine Moissl-Eichinger
- Department of Internal Medicine, Joint Facilities, Medical University of Graz, Graz, Austria
- BioTechMed-Graz, Graz, Austria
| | | | - Birgit Sattler
- Institute of Ecology, University of Innsbruck, Innsbruck, Austria
- Austrian Polar Research Institute, Vienna, Austria
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15
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Perini L, Gostinčar C, Anesio AM, Williamson C, Tranter M, Gunde-Cimerman N. Darkening of the Greenland Ice Sheet: Fungal Abundance and Diversity Are Associated With Algal Bloom. Front Microbiol 2019; 10:557. [PMID: 30949152 PMCID: PMC6437116 DOI: 10.3389/fmicb.2019.00557] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2018] [Accepted: 03/04/2019] [Indexed: 01/16/2023] Open
Abstract
Recent studies have highlighted the importance of ice-algal blooms in driving darkening and therefore surface melt of the Greenland Ice Sheet (GrIS). However, the contribution of fungal and bacterial communities to this microbially driven albedo reduction remains unconstrained. To address this significant knowledge gap, fungi were isolated from key GrIS surface habitats (surface ice containing varying abundance of ice algae, supraglacial water, cryoconite holes, and snow), and a combination of cultivation and sequencing methods utilized to characterize the algal-associated fungal and bacterial diversity and abundance. Six hundred and ninety-seven taxa of fungi were obtained by amplicon sequencing and more than 200 fungal cultures belonging to 46 different species were isolated through cultivation approaches. Basidiomycota dominated in surface ice and water samples, and Ascomycota in snow samples. Amplicon sequencing revealed that bacteria were characterized by a higher diversity (883 taxa detected). Results from cultivation as well as ergosterol analyses suggested that surface ice dominated by ice algae and cryoconite holes supported the highest fungal biomass (104-105 CFU/100 ml) and that many fungal taxa recognized as endophytes and plant pathogens were associated with dark ice characterized by a high abundance of ice algae. This paper significantly advances this field of research by investigating for the first time the fungal abundance and diversity associated with algal blooms causing the darkening of the GrIS. There is a strong association between the abundance and diversity of fungal species and the blooming of algae on the surface ice of the Greenland Ice Sheet.
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Affiliation(s)
- Laura Perini
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
| | - Cene Gostinčar
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
- Department of Molecular and Biomedical Sciences, Jožef Stefan Institute, Ljubljana, Slovenia
| | - Alexandre Magno Anesio
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, Bristol, United Kingdom
- Department of Environmental Science, Aarhus University, Roskilde, Denmark
| | - Christopher Williamson
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, Bristol, United Kingdom
| | - Martyn Tranter
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, Bristol, United Kingdom
| | - Nina Gunde-Cimerman
- Department of Biology, Biotechnical Faculty, University of Ljubljana, Ljubljana, Slovenia
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16
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Žárský JD, Kohler TJ, Yde JC, Falteisek L, Lamarche-Gagnon G, Hawkings JR, Hatton JE, Stibal M. Prokaryotic assemblages in suspended and subglacial sediments within a glacierized catchment on Qeqertarsuaq (Disko Island), west Greenland. FEMS Microbiol Ecol 2018; 94:5017442. [DOI: 10.1093/femsec/fiy100] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2018] [Accepted: 05/27/2018] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jakub D Žárský
- Department of Ecology, Faculty of Science, Charles University, Prague, Vinicna 7, 128 44 Prague 2, Czechia
| | - Tyler J Kohler
- Department of Ecology, Faculty of Science, Charles University, Prague, Vinicna 7, 128 44 Prague 2, Czechia
| | - Jacob C Yde
- Department of Environment Sciences, Western Norway University of Applied Sciences, Royrgata 6, 6856 Sogndal, Norway
| | - Lukáš Falteisek
- Department of Ecology, Faculty of Science, Charles University, Prague, Vinicna 7, 128 44 Prague 2, Czechia
| | - Guillaume Lamarche-Gagnon
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | - Jon R Hawkings
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | - Jade E Hatton
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol BS8 1SS, UK
| | - Marek Stibal
- Department of Ecology, Faculty of Science, Charles University, Prague, Vinicna 7, 128 44 Prague 2, Czechia
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17
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Zhong ZP, Solonenko NE, Gazitúa MC, Kenny DV, Mosley-Thompson E, Rich VI, Van Etten JL, Thompson LG, Sullivan MB. Clean Low-Biomass Procedures and Their Application to Ancient Ice Core Microorganisms. Front Microbiol 2018; 9:1094. [PMID: 29910780 PMCID: PMC5992382 DOI: 10.3389/fmicb.2018.01094] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Accepted: 05/07/2018] [Indexed: 11/13/2022] Open
Abstract
Microorganisms in glacier ice provide tens to hundreds of thousands of years archive for a changing climate and microbial responses to it. Analyzing ancient ice is impeded by technical issues, including limited ice, low biomass, and contamination. While many approaches have been evaluated and advanced to remove contaminants on ice core surfaces, few studies leverage modern sequencing to establish in silico decontamination protocols for glacier ice. Here we sought to apply such “clean” sampling techniques with in silico decontamination approaches used elsewhere to investigate microorganisms archived in ice at ∼41 (D41, ∼20,000 years) and ∼49 m (D49, ∼30,000 years) depth in an ice core (GS3) from the summit of the Guliya ice cap in the northwestern Tibetan Plateau. Four “background” controls were established – a co-processed sterile water artificial ice core, two air samples collected from the ice processing laboratories, and a blank, sterile water sample – and used to assess contaminant microbial diversity and abundances. Amplicon sequencing revealed 29 microbial genera in these controls, but quantitative PCR showed that the controls contained about 50–100-times less 16S DNA than the glacial ice samples. As in prior work, we interpreted these low-abundance taxa in controls as “contaminants” and proportionally removed them in silico from the GS3 ice amplicon data. Because of the low biomass in the controls, we also compared prokaryotic 16S DNA amplicons from pre-amplified (by re-conditioning PCR) and standard amplicon sequencing, and found the resulting microbial profiles to be repeatable and nearly identical. Ecologically, the contaminant-controlled ice microbial profiles revealed significantly different microorganisms across the two depths in the GS3 ice core, which is consistent with changing climate, as reported for other glacier ice samples. Many GS3 ice core genera, including Methylobacterium, Sphingomonas, Flavobacterium, Janthinobacterium, Polaromonas, and Rhodobacter, were also abundant in previously studied ice cores, which suggests wide distribution across glacier environments. Together these findings help further establish “clean” procedures for studying low-biomass ice microbial communities and contribute to a baseline understanding of microorganisms archived in glacier ice.
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Affiliation(s)
- Zhi-Ping Zhong
- Byrd Polar and Climate Research Center, The Ohio State University, Columbus, OH, United States.,Department of Microbiology, The Ohio State University, Columbus, OH, United States
| | - Natalie E Solonenko
- Department of Microbiology, The Ohio State University, Columbus, OH, United States
| | - Maria C Gazitúa
- Department of Microbiology, The Ohio State University, Columbus, OH, United States
| | - Donald V Kenny
- Byrd Polar and Climate Research Center, The Ohio State University, Columbus, OH, United States
| | - Ellen Mosley-Thompson
- Byrd Polar and Climate Research Center, The Ohio State University, Columbus, OH, United States.,Department of Geography, The Ohio State University, Columbus, OH, United States
| | - Virginia I Rich
- Department of Microbiology, The Ohio State University, Columbus, OH, United States.,Department of Soil, Water and Environmental Science, The University of Arizona, Tucson, AZ, United States
| | - James L Van Etten
- Department of Plant Pathology and Nebraska Center for Virology, University of Nebraska-Lincoln, Lincoln, NE, United States
| | - Lonnie G Thompson
- Byrd Polar and Climate Research Center, The Ohio State University, Columbus, OH, United States.,School of Earth Sciences, The Ohio State University, Columbus, OH, United States
| | - Matthew B Sullivan
- Department of Microbiology, The Ohio State University, Columbus, OH, United States.,Department of Civil, Environmental and Geodetic Engineering, The Ohio State University, Columbus, OH, United States
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18
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Smith HJ, Dieser M, McKnight DM, SanClements MD, Foreman CM. Relationship between dissolved organic matter quality and microbial community composition across polar glacial environments. FEMS Microbiol Ecol 2018; 94:4995909. [DOI: 10.1093/femsec/fiy090] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2018] [Accepted: 05/11/2018] [Indexed: 11/12/2022] Open
Affiliation(s)
- HJ Smith
- Center for Biofilm Engineering, Montana State University, Bozeman, MT 59717, USA
| | - M Dieser
- Center for Biofilm Engineering, Montana State University, Bozeman, MT 59717, USA
- Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT 59717, USA
| | - DM McKnight
- INSTAAR, University of Colorado Boulder, Boulder, CO 80303, USA
| | - MD SanClements
- INSTAAR, University of Colorado Boulder, Boulder, CO 80303, USA
- National Ecological Observatory Network, Boulder, CO 80301, USA
| | - CM Foreman
- Center for Biofilm Engineering, Montana State University, Bozeman, MT 59717, USA
- Department of Chemical and Biological Engineering, Montana State University, Bozeman, MT 59717, USA
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19
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Lutz S, McCutcheon J, McQuaid JB, Benning LG. The diversity of ice algal communities on the Greenland Ice Sheet as revealed by oligotyping. Microb Genom 2018; 4. [PMID: 29547098 PMCID: PMC5885011 DOI: 10.1099/mgen.0.000159] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023] Open
Abstract
The Arctic is being disproportionally affected by climate change compared with other geographic locations, and is currently experiencing unprecedented melt rates. The Greenland Ice Sheet (GrIS) can be regarded as the largest supraglacial ecosystem on Earth, and ice algae are the dominant primary producers on bare ice surfaces throughout the course of a melt season. Ice-algal-derived pigments cause a darkening of the ice surface, which in turn decreases albedo and increases melt rates. The important role of ice algae in changing melt rates has only recently been recognized, and we currently know little about their community compositions and functions. Here, we present the first analysis of ice algal communities across a 100 km transect on the GrIS by high-throughput sequencing and subsequent oligotyping of the most abundant taxa. Our data reveal an extremely low algal diversity with Ancylonema nordenskiöldii and a Mesotaenium species being by far the dominant taxa at all sites. We employed an oligotyping approach and revealed a hidden diversity not detectable by conventional clustering of operational taxonomic units and taxonomic classification. Oligotypes of the dominant taxa exhibit a site-specific distribution, which may be linked to differences in temperatures and subsequently the extent of the melting. Our results help to better understand the distribution patterns of ice algal communities that play a crucial role in the GrIS ecosystem.
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Affiliation(s)
- Stefanie Lutz
- 1GFZ German Research Centre for Geosciences, Telegrafenberg, 14473 Potsdam, Germany
| | - Jenine McCutcheon
- 2School of Earth and Environment, University of Leeds, Leeds LS2 9JT, UK
| | - James B McQuaid
- 2School of Earth and Environment, University of Leeds, Leeds LS2 9JT, UK
| | - Liane G Benning
- 1GFZ German Research Centre for Geosciences, Telegrafenberg, 14473 Potsdam, Germany
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20
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Liu Y, Vick-Majors TJ, Priscu JC, Yao T, Kang S, Liu K, Cong Z, Xiong J, Li Y. Biogeography of cryoconite bacterial communities on glaciers of the Tibetan Plateau. FEMS Microbiol Ecol 2017; 93:3836910. [PMID: 28531262 DOI: 10.1093/femsec/fix072] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2017] [Accepted: 05/19/2017] [Indexed: 11/13/2022] Open
Abstract
Cryoconite holes, water-filled pockets containing biological and mineralogical deposits that form on glacier surfaces, play important roles in glacier mass balance, glacial geochemistry and carbon cycling. The presence of cryoconite material decreases surface albedo and accelerates glacier mass loss, a problem of particular importance in the rapidly melting Tibetan Plateau. No studies have addressed the microbial community composition of cryoconite holes and their associated ecosystem processes on Tibetan glaciers. To further enhance our understanding of these glacial ecosystems on the Tibetan Plateau and to examine their role in carbon cycling as the glaciers respond to climate change, we explored the bacterial communities within cryoconite holes associated with three climatically distinct Tibetan Plateau glaciers using Illumina sequencing of the V4 region of the 16S rRNA gene. Cryoconite bacterial communities were dominated by Cyanobacteria, Chloroflexi, Betaproteobacteria, Bacteroidetes and Actinobacteria. Cryoconite bacterial community composition varied according to their geographical locations, exhibiting significant differences among glaciers studied. Regional beta diversity was driven by the interaction between geographic distance and environmental variables; the latter contributed more than geographic distance to the variation in cryoconite microbial communities. Our study is the first to describe the regional-scale spatial variability and to identify the factors that drive regional variability of cryoconite bacterial communities on the Tibetan Plateau.
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Affiliation(s)
- Yongqin Liu
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing 100101, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Trista J Vick-Majors
- Département des sciences biologiques, Université du Québec à Montréal, Montréal, QC H3C 3P8, Canada
| | - John C Priscu
- Department of Land Resources and Environmental Sciences, Montana State University, Bozeman, MT 59717, USA
| | - Tandong Yao
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing 100101, China
| | - Shichang Kang
- CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing 100101, China.,State Key Laboratory of Cryosphere Science, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, China.,University of Chinese Academy of Sciences, Beijing 100049, China
| | - Keshao Liu
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing 100101, China
| | - Ziyuang Cong
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China.,CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing 100101, China
| | - Jingbo Xiong
- Faculty of Marine Sciences, Ningbo University, Ningbo 315211, China
| | - Yang Li
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing 100101, China
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21
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Ambrosini R, Musitelli F, Navarra F, Tagliaferri I, Gandolfi I, Bestetti G, Mayer C, Minora U, Azzoni RS, Diolaiuti G, Smiraglia C, Franzetti A. Diversity and Assembling Processes of Bacterial Communities in Cryoconite Holes of a Karakoram Glacier. MICROBIAL ECOLOGY 2017; 73:827-837. [PMID: 27999874 DOI: 10.1007/s00248-016-0914-6] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/07/2016] [Accepted: 12/09/2016] [Indexed: 06/06/2023]
Abstract
Cryoconite holes are small ponds that form on the surface of glaciers that contain a dark debris, the cryoconite, at the bottom and host active ecological communities. Differences in the structure of bacterial communities have been documented among Arctic and mountain glaciers, and among glaciers in different areas of the world. In this study, we investigated the structure of bacterial communities of cryoconite holes of Baltoro Glacier, a large (62 km in length and 524 km2 of surface) glacier of the Karakoram, by high-throughput sequencing of the V5-V6 hypervariable regions of the 16S rRNA gene. We found that Betaproteobacteria dominated bacterial communities, with large abundance of genera Polaromonas, probably thanks to its highly versatile metabolism, and Limnohabitans, which may have been favoured by the presence of supraglacial lakes in the area where cryoconite holes were sampled. Variation in bacterial communities among different sampling areas of the glacier could be explained by divergent selective processes driven by variation in environmental conditions, particularly pH, which was the only environmental variable that significantly affected the structure of bacterial communities. This variability may be due to both temporal and spatial patterns of variation in environmental conditions.
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Affiliation(s)
- Roberto Ambrosini
- Dept. of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126, Milan, Italy
| | - Federica Musitelli
- Dept. of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126, Milan, Italy
| | - Federico Navarra
- Dept. of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126, Milan, Italy
| | - Ilario Tagliaferri
- Dept. of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126, Milan, Italy
| | - Isabella Gandolfi
- Dept. of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126, Milan, Italy
| | - Giuseppina Bestetti
- Dept. of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126, Milan, Italy
| | - Christoph Mayer
- Bavarian Academy of Sciences and Humanities, Munich, Germany
| | - Umberto Minora
- "A. Desio" Dept. of Earth Sciences, Università degli Studi di Milano, Milan, Italy
| | | | | | - Claudio Smiraglia
- "A. Desio" Dept. of Earth Sciences, Università degli Studi di Milano, Milan, Italy
| | - Andrea Franzetti
- Dept. of Earth and Environmental Sciences (DISAT), University of Milano-Bicocca, Piazza della Scienza 1, 20126, Milan, Italy.
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22
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Cameron KA, Stibal M, Chrismas N, Box J, Jacobsen CS. Nitrate addition has minimal short-term impacts on greenland ice sheet supraglacial prokaryotes. ENVIRONMENTAL MICROBIOLOGY REPORTS 2017; 9:144-150. [PMID: 27943630 DOI: 10.1111/1758-2229.12510] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2016] [Accepted: 11/28/2016] [Indexed: 06/06/2023]
Abstract
Tropospheric nitrate levels are predicted to increase throughout the 21st century, with potential effects on terrestrial ecosystems, including the Greenland ice sheet (GrIS). This study considers the impacts of elevated nitrate concentrations on the abundance and composition of dominant bulk and active prokaryotic communities sampled from in situ nitrate fertilization plots on the GrIS surface. Nitrate concentrations were successfully elevated within sediment-filled meltwater pools, known as cryoconite holes; however, nitrate additions applied to surface ice did not persist. Estimated bulk and active cryoconite community cell abundance was unaltered by nitrate additions when compared to control holes using a quantitative PCR approach, and nitrate was found to have a minimal affect on the dominant 16S rRNA gene-based community composition. Together, these results indicate that sampled cryoconite communities were not nitrate limited at the time of sampling. Instead, temporal changes in biomass and community composition were more pronounced. As these in situ incubations were short (6 weeks), and the community composition across GrIS surface ice is highly variable, we suggest that further efforts should be considered to investigate the potential long-term impacts of increased nitrate across the GrIS.
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Affiliation(s)
- Karen A Cameron
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
- Institute of Biological, Environmental & Rural Sciences (IBERS), Aberystwyth University, Penglais, Aberystwyth, SY23 3FL, UK
| | - Marek Stibal
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
- Department of Ecology Faculty of Science, Charles University, Viničná 7, Prague, 128 43, Czech Republic
| | - Nathan Chrismas
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, Bristol, BS8 1SS, UK
| | - Jason Box
- Department of Glaciology and Climate, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, Copenhagen, DK-1350, Denmark
| | - Carsten S Jacobsen
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
- Department of Environmental Science, Aarhus University, Frederiksborgvej 399, Roskilde, DK-4000, Denmark
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Chen Y, Li XK, Si J, Wu GJ, Tian LD, Xiang SR. Changes of the Bacterial Abundance and Communities in Shallow Ice Cores from Dunde and Muztagata Glaciers, Western China. Front Microbiol 2016; 7:1716. [PMID: 27847503 PMCID: PMC5088206 DOI: 10.3389/fmicb.2016.01716] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Accepted: 10/13/2016] [Indexed: 02/02/2023] Open
Abstract
In this study, six bacterial community structures were analyzed from the Dunde ice core (9.5-m-long) using 16S rRNA gene cloning library technology. Compared to the Muztagata mountain ice core (37-m-long), the Dunde ice core has different dominant community structures, with five genus-related groups Blastococcus sp./Propionibacterium, Cryobacterium-related., Flavobacterium sp., Pedobacter sp., and Polaromas sp. that are frequently found in the six tested ice layers from 1990 to 2000. Live and total microbial density patterns were examined and related to the dynamics of physical-chemical parameters, mineral particle concentrations, and stable isotopic ratios in the precipitations collected from both Muztagata and Dunde ice cores. The Muztagata ice core revealed seasonal response patterns for both live and total cell density, with high cell density occurring in the warming spring and summer months indicated by the proxy value of the stable isotopic ratios. Seasonal analysis of live cell density for the Dunde ice core was not successful due to the limitations of sampling resolution. Both ice cores showed that the cell density peaks were frequently associated with high concentrations of particles. A comparison of microbial communities in the Dunde and Muztagata glaciers showed that similar taxonomic members exist in the related ice cores, but the composition of the prevalent genus-related groups is largely different between the two geographically different glaciers. This indicates that the micro-biogeography associated with geographic differences was mainly influenced by a few dominant taxonomic groups.
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Affiliation(s)
- Yong Chen
- School of Life Science, Lanzhou University, Lanzhou China
| | - Xiang-Kai Li
- School of Life Science, Lanzhou University, Lanzhou China
| | - Jing Si
- Institute of Modern Physics, Chinese Academy of Sciences, Lanzhou China
| | - Guang-Jian Wu
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, BeijingChina; Laboratory of Ice Core and Cold Regions Environment, Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Science, LanzhouChina
| | - Li-De Tian
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, BeijingChina; Laboratory of Ice Core and Cold Regions Environment, Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Science, LanzhouChina
| | - Shu-Rong Xiang
- School of Life Science, Lanzhou University, LanzhouChina; Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, BeijingChina; Laboratory of Ice Core and Cold Regions Environment, Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Science, LanzhouChina
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Elster J, Margesin R, Wagner D, Häggblom M. Editorial: Polar and Alpine Microbiology—Earth's cryobiosphere. FEMS Microbiol Ecol 2016; 93:fiw221. [DOI: 10.1093/femsec/fiw221] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/18/2016] [Indexed: 11/12/2022] Open
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Cameron KA, Stibal M, Hawkings JR, Mikkelsen AB, Telling J, Kohler TJ, Gözdereliler E, Zarsky JD, Wadham JL, Jacobsen CS. Meltwater export of prokaryotic cells from the Greenland ice sheet. Environ Microbiol 2016; 19:524-534. [PMID: 27489963 DOI: 10.1111/1462-2920.13483] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2016] [Accepted: 07/31/2016] [Indexed: 11/26/2022]
Abstract
Microorganisms are flushed from the Greenland Ice Sheet (GrIS) where they may contribute towards the nutrient cycling and community compositions of downstream ecosystems. We investigate meltwater microbial assemblages as they exit the GrIS from a large outlet glacier, and as they enter a downstream river delta during the record melt year of 2012. Prokaryotic abundance, flux and community composition was studied, and factors affecting community structures were statistically considered. The mean concentration of cells exiting the ice sheet was 8.30 × 104 cells mL-1 and we estimate that ∼1.02 × 1021 cells were transported to the downstream fjord in 2012, equivalent to 30.95 Mg of carbon. Prokaryotic microbial assemblages were dominated by Proteobacteria, Bacteroidetes, and Actinobacteria. Cell concentrations and community compositions were stable throughout the sample period, and were statistically similar at both sample sites. Based on our observations, we argue that the subglacial environment is the primary source of the river-transported microbiota, and that cell export from the GrIS is dependent on discharge. We hypothesise that the release of subglacial microbiota to downstream ecosystems will increase as freshwater flux from the GrIS rises in a warming world.
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Affiliation(s)
- Karen A Cameron
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark.,Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
| | - Marek Stibal
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark.,Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark.,Department of Ecology, Faculty of Science, Charles University, Viničná 7, 128 43, Prague, Czech Republic
| | - Jon R Hawkings
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, BS8 1SS, Bristol, UK
| | - Andreas B Mikkelsen
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
| | - Jon Telling
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, BS8 1SS, Bristol, UK
| | - Tyler J Kohler
- Department of Ecology, Faculty of Science, Charles University, Viničná 7, 128 43, Prague, Czech Republic
| | - Erkin Gözdereliler
- Department of Geochemistry, Geological Survey of Denmark and Greenland (GEUS), Øster Voldgade 10, DK-1350, Copenhagen, Denmark.,Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark
| | - Jakub D Zarsky
- Department of Ecology, Faculty of Science, Charles University, Viničná 7, 128 43, Prague, Czech Republic
| | - Jemma L Wadham
- Bristol Glaciology Centre, School of Geographical Sciences, University of Bristol, University Road, BS8 1SS, Bristol, UK
| | - Carsten S Jacobsen
- Center for Permafrost (CENPERM), University of Copenhagen, Øster Voldgade 10, DK-1350, Copenhagen, Denmark.,Department of Environmental Science, Aarhus University, Frederiksborgvej 399, DK-4000, Roskilde, Denmark
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Uetake J, Tanaka S, Segawa T, Takeuchi N, Nagatsuka N, Motoyama H, Aoki T. Microbial community variation in cryoconite granules on Qaanaaq Glacier, NW Greenland. FEMS Microbiol Ecol 2016; 92:fiw127. [PMID: 27306554 DOI: 10.1093/femsec/fiw127] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/20/2016] [Indexed: 12/23/2022] Open
Abstract
Cryoconite granules are aggregations of microorganisms with mineral particles that form on glacier surfaces. To understand the processes by which the granules develop, this study focused on the altitudinal distribution of the granules and photosynthetic microorganisms on the glacier, bacterial community variation with granules size and environmental factors affecting the growth of the granules. Size-sorted cryoconite granules collected from five different sites on Qaanaaq Glacier were analyzed. C and N contents were significantly higher in large (diameter greater than 250 μm) granules than in smaller (diameter 30-249 μm) granules. Bacterial community structures, based on 16S rRNA gene amplicon sequencing, were different between the smaller and larger granules. The filamentous cyanobacterium Phormidesmis priestleyi was the dominant bacterial species in larger granules. Multivariate analysis suggests that the abundance of mineral particles on the glacier surface is the main factor controlling growth of these cyanobacteria. These results show that the supply of mineral particles on the glacier enhances granule development, that P. priestleyi is likely the key species for primary production and the formation of the granules and that the bacterial community in the granules changes over the course of the granule development.
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Affiliation(s)
- Jun Uetake
- Transdisciplinary Research Integration Center, Minatoku, Tokyo 105-0001, Japan National Institute of Polar Research, Tachikawa, Tokyo 190-8518, Japan
| | - Sota Tanaka
- Graduate School of Science, Chiba University, Inageku, Chiba 263-8522, Japan
| | - Takahiro Segawa
- Transdisciplinary Research Integration Center, Minatoku, Tokyo 105-0001, Japan National Institute of Polar Research, Tachikawa, Tokyo 190-8518, Japan Center for Life Science Research, University of Yamanashi, Yamanashi, Japan
| | - Nozomu Takeuchi
- Graduate School of Science, Chiba University, Inageku, Chiba 263-8522, Japan
| | - Naoko Nagatsuka
- National Institute of Polar Research, Tachikawa, Tokyo 190-8518, Japan
| | - Hideaki Motoyama
- National Institute of Polar Research, Tachikawa, Tokyo 190-8518, Japan
| | - Teruo Aoki
- Climate Research Department, Meteorological Research Institute, Tsukuba, Ibaraki 305-0052, Japan
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27
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Nikrad MP, Kerkhof LJ, Häggblom MM. The subzero microbiome: microbial activity in frozen and thawing soils. FEMS Microbiol Ecol 2016; 92:fiw081. [PMID: 27106051 DOI: 10.1093/femsec/fiw081] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/17/2016] [Indexed: 01/15/2023] Open
Abstract
Most of the Earth's biosphere is characterized by low temperatures (<5°C) and cold-adapted microorganisms are widespread. These psychrophiles have evolved a complex range of adaptations of all cellular constituents to counteract the potentially deleterious effects of low kinetic energy environments and the freezing of water. Microbial life continues into the subzero temperature range, and this activity contributes to carbon and nitrogen flux in and out of ecosystems, ultimately affecting global processes. Microbial responses to climate warming and, in particular, thawing of frozen soils are not yet well understood, although the threat of microbial contribution to positive feedback of carbon flux is substantial. To date, several studies have examined microbial community dynamics in frozen soils and permafrost due to changing environmental conditions, and some have undertaken the complicated task of characterizing microbial functional groups and how their activity changes with changing conditions, either in situ or by isolating and characterizing macromolecules. With increasing temperature and wetter conditions microbial activity of key microbes and subsequent efflux of greenhouse gases also increase. In this review, we aim to provide an overview of microbial activity in seasonally frozen soils and permafrost. With a more detailed understanding of the microbiological activities in these vulnerable soil ecosystems, we can begin to predict and model future expectations for carbon release and climate change.
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Affiliation(s)
| | - Lee J Kerkhof
- Department of Marine and Coastal Sciences, Rutgers, the State University of New Jersey, New Brunswick, NJ 08901, USA
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