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Neupane R, Aryal A, Haeussermann A, Hartung E, Pinedo P, Paudyal S. Evaluating machine learning algorithms to predict lameness in dairy cattle. PLoS One 2024; 19:e0301167. [PMID: 39024328 PMCID: PMC11257334 DOI: 10.1371/journal.pone.0301167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 07/05/2024] [Indexed: 07/20/2024] Open
Abstract
Dairy cattle lameness represents one of the common concerns in intensive and commercial dairy farms. Lameness is characterized by gait-related behavioral changes in cows and multiple approaches are being utilized to associate these changes with lameness conditions including data from accelerometers, and other precision technologies. The objective was to evaluate the use of machine learning algorithms for the identification of lameness conditions in dairy cattle. In this study, 310 multiparous Holstein dairy cows from a herd in Northern Colorado were affixed with a leg-based accelerometer (Icerobotics® Inc, Edinburg, Scotland) to obtain the lying time (min/d), daily steps count (n/d), and daily change (n/d). Subsequently, study cows were monitored for 4 months and cows submitted for claw trimming (CT) were differentiated as receiving corrective claw trimming (CCT) or as being diagnosed with a lameness disorder and consequent therapeutic claw trimming (TCT) by a certified hoof trimmer. Cows not submitted to CT were considered healthy controls. A median filter was applied to smoothen the data by reducing inherent variability. Three different machine learning (ML) models were defined to fit each algorithm which included the conventional features (containing daily lying, daily steps, and daily change derived from the accelerometer), slope features (containing features extracted from each variable in Conventional feature), or all features (3 simple features and 3 slope features). Random forest (RF), Naive Bayes (NB), Logistic Regression (LR), and Time series (ROCKET) were used as ML predictive approaches. For the classification of cows requiring CCT and TCT, ROCKET classifier performed better with accuracy (> 90%), ROC-AUC (> 74%), and F1 score (> 0.61) as compared to other algorithms. Slope features derived in this study increased the efficiency of algorithms as the better-performing models included All features explored. However, further classification of diseases into infectious and non-infectious events was not effective because none of the algorithms presented satisfactory model accuracy parameters. For the classification of observed cow locomotion scores into severely lame and moderately lame conditions, the ROCKET classifier demonstrated satisfactory accuracy (> 0.85), ROC-AUC (> 0.68), and F1 scores (> 0.44). We conclude that ML models using accelerometer data are helpful in the identification of lameness in cows but need further research to increase the granularity and accuracy of classification.
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Affiliation(s)
- Rajesh Neupane
- Department of Animal Science, Texas A&M University, College Station, Texas, United States of America
| | - Ashrant Aryal
- Department of Construction Science, Texas A&M University, College Station, Texas, United States of America
| | | | - Eberhard Hartung
- Department of Agricultural Engineering, Kiel University, Kiel, Germany
| | - Pablo Pinedo
- Department of Animal Sciences, Colorado State University, Fort Collins, Colorado, United States of America
| | - Sushil Paudyal
- Department of Animal Science, Texas A&M University, College Station, Texas, United States of America
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2
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Picault S, Niang G, Sicard V, Sorin-Dupont B, Assié S, Ezanno P. Leveraging artificial intelligence and software engineering methods in epidemiology for the co-creation of decision-support tools based on mechanistic models. Prev Vet Med 2024; 228:106233. [PMID: 38820831 DOI: 10.1016/j.prevetmed.2024.106233] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Revised: 04/17/2024] [Accepted: 05/18/2024] [Indexed: 06/02/2024]
Abstract
Epidemiological modeling is a key lever for infectious disease control and prevention on farms. It makes it possible to understand the spread of pathogens, but also to compare intervention scenarios even in counterfactual situations. However, the actual capability of decision makers to use mechanistic models to support timely interventions is limited. This study demonstrates how artificial intelligence (AI) techniques can make mechanistic epidemiological models more accessible to farmers and veterinarians, and how to transform such models into user-friendly decision-support tools (DST). By leveraging knowledge representation methods, such as the textual formalization of model components through a domain-specific language (DSL), the co-design of mechanistic models and DST becomes more efficient and collaborative. This facilitates the integration of explicit expert knowledge and practical insights into the modeling process. Furthermore, the utilization of AI and software engineering enables the automation of web application generation based on existing mechanistic models. This automation simplifies the development of DST, as tool designers can focus on identifying users' needs and specifying expected features and meaningful presentations of outcomes, instead of wasting time in writing code to wrap models into web apps. To illustrate the practical application of this approach, we consider the example of Bovine Respiratory Disease (BRD), a tough challenge in fattening farms where young beef bulls often develop BRD shortly after being allocated into pens. BRD is a multi-factorial, multi-pathogen disease that is difficult to anticipate and control, often resulting in the massive use of antimicrobials to mitigate its impact on animal health, welfare, and economic losses. The DST developed from an existing mechanistic BRD model empowers users, including farmers and veterinarians, to customize scenarios based on their specific farm conditions. It enables them to anticipate the effects of various pathogens, compare the epidemiological and economic outcomes associated with different farming practices, and decide how to balance the reduction of disease impact and the reduction of antimicrobial usage (AMU). The generic method presented in this article illustrates the potential of artificial intelligence (AI) and software engineering methods to enhance the co-creation of DST based on mechanistic models in veterinary epidemiology. The corresponding pipeline is distributed as an open-source software. By leveraging these advancements, this research aims to bridge the gap between theoretical models and the practical usage of their outcomes on the field.
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Affiliation(s)
| | - Guita Niang
- Oniris, INRAE, BIOEPAR, 44300, Nantes, France
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3
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Parsons IL, Karisch BB, Stone AE, Webb SL, Norman DA, Street GM. Machine Learning Methods and Visual Observations to Categorize Behavior of Grazing Cattle Using Accelerometer Signals. SENSORS (BASEL, SWITZERLAND) 2024; 24:3171. [PMID: 38794023 PMCID: PMC11124846 DOI: 10.3390/s24103171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 04/18/2024] [Accepted: 05/03/2024] [Indexed: 05/26/2024]
Abstract
Accelerometers worn by animals produce distinct behavioral signatures, which can be classified accurately using machine learning methods such as random forest decision trees. The objective of this study was to identify accelerometer signal separation among parsimonious behaviors. We achieved this objective by (1) describing functional differences in accelerometer signals among discrete behaviors, (2) identifying the optimal window size for signal pre-processing, and (3) demonstrating the number of observations required to achieve the desired level of model accuracy,. Crossbred steers (Bos taurus indicus; n = 10) were fitted with GPS collars containing a video camera and tri-axial accelerometers (read-rate = 40 Hz). Distinct behaviors from accelerometer signals, particularly for grazing, were apparent because of the head-down posture. Increasing the smoothing window size to 10 s improved classification accuracy (p < 0.05), but reducing the number of observations below 50% resulted in a decrease in accuracy for all behaviors (p < 0.05). In-pasture observation increased accuracy and precision (0.05 and 0.08 percent, respectively) compared with animal-borne collar video observations.
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Affiliation(s)
- Ira Lloyd Parsons
- Quantitative Ecology and Spatial Technologies Laboratory, Department of Wildlife, Fisheries and Aquaculture, Mississippi State University, Starkville, MS 39762, USA; (D.A.N.); (G.M.S.)
- West River Research and Extension Center, Department of Animal Science, South Dakota State University, Rapid City, SD 57703, USA
| | - Brandi B. Karisch
- Department of Animal and Dairy Sciences, Mississippi State University, Starkville, MS 39762, USA; (B.B.K.); (A.E.S.)
| | - Amanda E. Stone
- Department of Animal and Dairy Sciences, Mississippi State University, Starkville, MS 39762, USA; (B.B.K.); (A.E.S.)
| | - Stephen L. Webb
- Texas A&M Natural Resources Institute and Department of Rangeland, Wildlife, and Fisheries Management, Texas A&M University, College Station, TX 77843, USA;
| | - Durham A. Norman
- Quantitative Ecology and Spatial Technologies Laboratory, Department of Wildlife, Fisheries and Aquaculture, Mississippi State University, Starkville, MS 39762, USA; (D.A.N.); (G.M.S.)
| | - Garrett M. Street
- Quantitative Ecology and Spatial Technologies Laboratory, Department of Wildlife, Fisheries and Aquaculture, Mississippi State University, Starkville, MS 39762, USA; (D.A.N.); (G.M.S.)
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4
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Arshad MF, Burrai GP, Varcasia A, Sini MF, Ahmed F, Lai G, Polinas M, Antuofermo E, Tamponi C, Cocco R, Corda A, Parpaglia MLP. The groundbreaking impact of digitalization and artificial intelligence in sheep farming. Res Vet Sci 2024; 170:105197. [PMID: 38395008 DOI: 10.1016/j.rvsc.2024.105197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 02/12/2024] [Accepted: 02/19/2024] [Indexed: 02/25/2024]
Abstract
The integration of digitalization and Artificial Intelligence (AI) has marked the onset of a new era of efficient sheep farming in multiple aspects ranging from the general well-being of sheep to advanced web-based management applications. The resultant improvement in sheep health and consequently better farming yield has already started to benefit both farmers and veterinarians. The predictive analytical models embedded with machine learning (giving sense to machines) has helped better decision-making and has enabled farmers to derive most out of their farms. This is evident in the ability of farmers to remotely monitor livestock health by wearable devices that keep track of animal vital signs and behaviour. Additionally, veterinarians now employ advanced AI-based diagnostics for efficient parasite detection and control. Overall, digitalization and AI have completely transformed traditional farming practices in livestock animals. However, there is a pressing need to optimize digital sheep farming, allowing sheep farmers to appreciate and adopt these innovative systems. To fill this gap, this review aims to provide available digital and AI-based systems designed to aid precision farming of sheep, offering an up-to-date understanding on the subject. Various contemporary techniques, such as sky shepherding, virtual fencing, advanced parasite detection, automated counting and behaviour tracking, anomaly detection, precision nutrition, breeding support, and several mobile-based management applications are currently being utilized in sheep farms and appear to be promising. Although artificial intelligence and machine learning may represent key features in the sustainable development of sheep farming, they present numerous challenges in application.
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Affiliation(s)
| | | | - Antonio Varcasia
- Department of Veterinary Medicine, University of Sassari, Sassari, Italy.
| | | | - Fahad Ahmed
- Nutrition Innovation Centre for Food and Health (NICHE), School of Biomedical Sciences, Ulster University, Coleraine BT52 1SA, UK
| | - Giovanni Lai
- Department of Veterinary Medicine, University of Sassari, Sassari, Italy
| | - Marta Polinas
- Department of Veterinary Medicine, University of Sassari, Sassari, Italy
| | | | - Claudia Tamponi
- Department of Veterinary Medicine, University of Sassari, Sassari, Italy
| | - Raffaella Cocco
- Department of Veterinary Medicine, University of Sassari, Sassari, Italy
| | - Andrea Corda
- Department of Veterinary Medicine, University of Sassari, Sassari, Italy
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von Keyserlingk MAG, Mills KE, Weary DM. Attitudes of western Canadian dairy farmers toward technology. J Dairy Sci 2024; 107:933-943. [PMID: 37709035 DOI: 10.3168/jds.2023-23279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Accepted: 08/25/2023] [Indexed: 09/16/2023]
Abstract
Dairy farms have become more reliant on technology. The overall aim of this study was to better understand how dairy farmers view technology and its effects on animal care, including their views on the prospect of integrating gene-editing technology in the future. Virtual-semistructured interviews were conducted with dairy farmers (n = 11) from British Columbia and Alberta. To facilitate discussion, the participants were asked to develop and discuss a timeline describing when and why various technologies were adopted on their farm. Although farmers defined technology broadly and affecting multiple aspects of farm management, this paper focuses on their views regarding how technology can affect animal care. Following thematic analysis of the data, the following 3 themes emerged: (1) the changing role of the farmer (including intergenerational considerations and learning new technology), (2) the effect of technology on the cow and her relationship with the farmer and, (3) technology as the future of the farm. The discussions also highlight the concerns that some farmers have regarding challenges associated with reduced human-animal interactions and effective use of the large amounts of data that are collected through technology. We also specifically asked the participants their views about gene editing as a potential future technology. Most of the participants did not specifically address their views on gene editing, but they spoke about the effect on genetic technologies more generally, often making references to genomic testing. However, some questioned how this technology may affect farmers more generally and spoke about how it could affect human-animal relationships. These results illustrate differences among farmers in the way they view technology and how this can affect the dairy cattle they care for.
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Affiliation(s)
- Marina A G von Keyserlingk
- Animal Welfare Program, Faculty of Land and Food Systems, The University of British Columbia, Vancouver, BC, Canada V6T 1Z4.
| | - Katelyn E Mills
- Animal Welfare Program, Faculty of Land and Food Systems, The University of British Columbia, Vancouver, BC, Canada V6T 1Z4
| | - Daniel M Weary
- Animal Welfare Program, Faculty of Land and Food Systems, The University of British Columbia, Vancouver, BC, Canada V6T 1Z4
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Tedeschi LO. Review: The prevailing mathematical modeling classifications and paradigms to support the advancement of sustainable animal production. Animal 2023; 17 Suppl 5:100813. [PMID: 37169649 DOI: 10.1016/j.animal.2023.100813] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 04/02/2023] [Accepted: 04/06/2023] [Indexed: 05/13/2023] Open
Abstract
Mathematical modeling is typically framed as the art of reductionism of scientific knowledge into an arithmetical layout. However, most untrained people get the art of modeling wrong and end up neglecting it because modeling is not simply about writing equations and generating numbers through simulations. Models tell not only about a story; they are spoken to by the circumstances under which they are envisioned. They guide apprentice and experienced modelers to build better models by preventing known pitfalls and invalid assumptions in the virtual world and, most importantly, learn from them through simulation and identify gaps in pushing scientific knowledge further. The power of the human mind is well-documented for idealizing concepts and creating virtual reality models, and as our hypotheses grow more complicated and more complex data become available, modeling earns more noticeable footing in biological sciences. The fundamental modeling paradigms include discrete-events, dynamic systems, agent-based (AB), and system dynamics (SD). The source of knowledge is the most critical step in the model-building process regardless of the paradigm, and the necessary expertise includes (a) clear and concise mental concepts acquired through different ways that provide the fundamental structure and expected behaviors of the model and (b) numerical data necessary for statistical analysis, not for building the model. The unreasonable effectiveness of models to grow scientific learning and knowledge in sciences arise because different researchers would model the same problem differently, given their knowledge and experiential background, leading to choosing different variables and model structures. Secondly, different researchers might use different paradigms and even unalike mathematics to resolve the same problem; thus, model needs are intrinsic to their perceived assumptions and structures. Thirdly, models evolve as the scientific community knowledge accumulates and matures over time, hopefully resulting in improved modeling efforts; thus, the perfect model is fictional. Some paradigms are most appropriate for macro, high abstraction with less detailed-oriented scenarios, while others are most suitable for micro, low abstraction with higher detailed-oriented strategies. Modern hybridization aggregating artificial intelligence (AI) to mathematical models can become the next technological wave in modeling. AI can be an integral part of the SD/AB models and, before long, write the model code by itself. Success and failures in model building are more related to the ability of the researcher to interpret the data and understand the underlying principles and mechanisms to formulate the correct relationship among variables rather than profound mathematical knowledge.
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Affiliation(s)
- L O Tedeschi
- Department of Animal Science, Texas A&M University, College Station, TX 77843-2471, United States.
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Pinna D, Sara G, Todde G, Atzori AS, Artizzu V, Spano LD, Caria M. Advancements in combining electronic animal identification and augmented reality technologies in digital livestock farming. Sci Rep 2023; 13:18282. [PMID: 37880358 PMCID: PMC10600116 DOI: 10.1038/s41598-023-45772-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Accepted: 10/24/2023] [Indexed: 10/27/2023] Open
Abstract
Modern livestock farm technologies allow operators to have access to a multitude of data thanks to the high number of mobile and fixed sensors available on both the livestock farming machinery and the animals. These data can be consulted via PC, tablet, and smartphone, which must be handheld by the operators, leading to an increase in the time needed for on-field activities. In this scenario, the use of augmented reality smart glasses could allow the visualization of data directly in the field, providing for a hands-free environment for the operator to work. Nevertheless, to visualize specific animal information, a connection between the augmented reality smart glasses and electronic animal identification is needed. Therefore, the main objective of this study was to develop and test a wearable framework, called SmartGlove that is able to link RFID animal tags and augmented reality smart glasses via a Bluetooth connection, allowing the visualization of specific animal data directly in the field. Moreover, another objective of the study was to compare different levels of augmented reality technologies (assisted reality vs. mixed reality) to assess the most suitable solution for livestock management scenarios. For this reason, the developed framework and the related augmented reality smart glasses applications were tested in the laboratory and in the field. Furthermore, the stakeholders' point of view was analyzed using two standard questionnaires, the NASA-Task Load Index and the IBM-Post Study System Usability Questionnaire. The outcomes of the laboratory tests underlined promising results regarding the operating performances of the developed framework, showing no significant differences if compared to a commercial RFID reader. During the on-field trial, all the tested systems were capable of performing the task in a short time frame. Furthermore, the operators underlined the advantages of using the SmartGlove system coupled with the augmented reality smart glasses for the direct on-field visualization of animal data.
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Affiliation(s)
- Daniele Pinna
- Department of Agricultural Sciences, University of Sassari, Viale Italia 39/A, 07100, Sassari, Italy
| | - Gabriele Sara
- Department of Agricultural Sciences, University of Sassari, Viale Italia 39/A, 07100, Sassari, Italy
| | - Giuseppe Todde
- Department of Agricultural Sciences, University of Sassari, Viale Italia 39/A, 07100, Sassari, Italy.
| | - Alberto Stanislao Atzori
- Department of Agricultural Sciences, University of Sassari, Viale Italia 39/A, 07100, Sassari, Italy
| | - Valentino Artizzu
- Department of Mathematics and Computer Science, University of Cagliari, Via Ospedale 72, 09124, Cagliari, Italy
| | - Lucio Davide Spano
- Department of Mathematics and Computer Science, University of Cagliari, Via Ospedale 72, 09124, Cagliari, Italy
| | - Maria Caria
- Department of Agricultural Sciences, University of Sassari, Viale Italia 39/A, 07100, Sassari, Italy
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Alon A, Shimshoni I, Godo A, Berenstein R, Lepar J, Bergman N, Halachmi I. Machine vision-based automatic lamb identification and drinking activity in a commercial farm. Animal 2023; 17:100923. [PMID: 37660410 DOI: 10.1016/j.animal.2023.100923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Revised: 07/19/2023] [Accepted: 07/22/2023] [Indexed: 09/05/2023] Open
Abstract
Using ear tags, farmers can track specific data for individual lambs such as age, medical records, body condition scores, genetic abnormalities; to make data-based decisions. However, automatic reading of ear tags using Radio Frequency Identification requires (a) an antenna, (b) a reader, (c) comparable reading standards; consequently, such a system can be expensive and impractical for a large group of lambs, especially in situations where animals are not required to have a compulsory Electronic identification, contrary to the case in Europe, where it is mandatory. Therefore, this paper proposes a machine vision system for indoor animals to identify individual lambs using existing ear tags. Using a camera that is installed such that the trough is visible, the drinking behaviour of the lambs can be automatically monitored. Data from different lamb groups in two different pens were collected. The identification algorithm includes a number of steps: (1) Detecting the lambs' face, and its ear tags in each image; (2) Cropping each ear tag image and discerning the digits on it to obtain the tag number; (3) Tracking each lamb throughout the visit using a tracking algorithm; (4) Recovering the ear tag number using an algorithm that incorporates a list of the ear tag numbers of the lambs in each pen, and the predictions for each lamb in each frame. The You Only Look Once deep learning object detection algorithm was applied to locate and localise the lamb's face and the digits in an image. The models' datasets contained 1 160 and 2 165 images for the training set, and 325 and 616 images for the validation set, respectively. The algorithm output includes the identity of each lamb that came to drink, and its duration. The identification system resulted in a total accuracy of 93% for the data tested, which consisted of approximately 900 visits to the drinking stations, and was collected in real time in a natural environment. The ground truth of each video of a visit was obtained by human observation by studying the video. We checked if there was indeed a visit to the water trough and if so we registered the ear tag number of each lamb whose head was above the water trough. Thus, identifying lambs in a commercial pen using a relatively inexpensive and easily installed system consisting of a RGB camera and a computer vision-based algorithm has potential for farm management.
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Affiliation(s)
- A Alon
- Precision livestock farming (PLF) Lab., Agricultural Engineering Institute, Agricultural Research Organization (A.R.O.) - Volcani Institute, 68 Hamaccabim Road, P.O.B. 15159, Rishon Lezion 7505101, Israel; Dept. of Information Systems, Haifa University, 199 Abba Khoushy Ave, Haifa 3498838, Israel
| | - I Shimshoni
- Dept. of Information Systems, Haifa University, 199 Abba Khoushy Ave, Haifa 3498838, Israel
| | - A Godo
- Precision livestock farming (PLF) Lab., Agricultural Engineering Institute, Agricultural Research Organization (A.R.O.) - Volcani Institute, 68 Hamaccabim Road, P.O.B. 15159, Rishon Lezion 7505101, Israel
| | - R Berenstein
- Precision livestock farming (PLF) Lab., Agricultural Engineering Institute, Agricultural Research Organization (A.R.O.) - Volcani Institute, 68 Hamaccabim Road, P.O.B. 15159, Rishon Lezion 7505101, Israel
| | - J Lepar
- Precision livestock farming (PLF) Lab., Agricultural Engineering Institute, Agricultural Research Organization (A.R.O.) - Volcani Institute, 68 Hamaccabim Road, P.O.B. 15159, Rishon Lezion 7505101, Israel
| | - N Bergman
- Precision livestock farming (PLF) Lab., Agricultural Engineering Institute, Agricultural Research Organization (A.R.O.) - Volcani Institute, 68 Hamaccabim Road, P.O.B. 15159, Rishon Lezion 7505101, Israel
| | - I Halachmi
- Precision livestock farming (PLF) Lab., Agricultural Engineering Institute, Agricultural Research Organization (A.R.O.) - Volcani Institute, 68 Hamaccabim Road, P.O.B. 15159, Rishon Lezion 7505101, Israel.
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Taghipoor M, Pastell M, Martin O, Nguyen Ba H, van Milgen J, Doeschl-Wilson A, Loncke C, Friggens NC, Puillet L, Muñoz-Tamayo R. Animal board invited review: Quantification of resilience in farm animals. Animal 2023; 17:100925. [PMID: 37690272 DOI: 10.1016/j.animal.2023.100925] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2023] [Revised: 07/17/2023] [Accepted: 07/20/2023] [Indexed: 09/12/2023] Open
Abstract
Resilience, when defined as the capacity of an animal to respond to short-term environmental challenges and to return to the prechallenge status, is a dynamic and complex trait. Resilient animals can reinforce the capacity of the herd to cope with often fluctuating and unpredictable environmental conditions. The ability of modern technologies to simultaneously record multiple performance measures of individual animals over time is a huge step forward to evaluate the resilience of farm animals. However, resilience is not directly measurable and requires mathematical models with biologically meaningful parameters to obtain quantitative resilience indicators. Furthermore, interpretive models may also be needed to determine the periods of perturbation as perceived by the animal. These applications do not require explicit knowledge of the origin of the perturbations and are developed based on real-time information obtained in the data during and outside the perturbation period. The main objective of this paper was to review and illustrate with examples, different modelling approaches applied to this new generation of data (i.e., with high-frequency recording) to detect and quantify animal responses to perturbations. Case studies were developed to illustrate alternative approaches to real-time and post-treatment of data. In addition, perspectives on the use of hybrid models for better understanding and predicting animal resilience are presented. Quantification of resilience at the individual level makes possible the inclusion of this trait into future breeding programmes. This would allow improvement of the capacity of animals to adapt to a changing environment, and therefore potentially reduce the impact of disease and other environmental stressors on animal welfare. Moreover, such quantification allows the farmer to tailor the management strategy to help individual animals to cope with the perturbation, hence reducing the use of pharmaceuticals, and decreasing the level of pain of the animal.
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Affiliation(s)
- M Taghipoor
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120 Palaiseau, France.
| | - M Pastell
- Natural Resources Institute Finland (Luke), Production Systems, Helsinki, Finland
| | - O Martin
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120 Palaiseau, France
| | - H Nguyen Ba
- Univ Clermont Auvergne, INRAE, VetAgro Sup, UMR Herbivores, F-63122 SaintGenes Champanelle, France
| | | | - A Doeschl-Wilson
- The Roslin Institute, University of Edinburgh, Easter Bush EH25 9RG, UK
| | - C Loncke
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120 Palaiseau, France
| | - N C Friggens
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120 Palaiseau, France
| | - L Puillet
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120 Palaiseau, France
| | - R Muñoz-Tamayo
- Université Paris-Saclay, INRAE, AgroParisTech, UMR Modélisation Systémique Appliquée aux Ruminants, 91120 Palaiseau, France
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10
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Nyamuryekung’e S, Duff G, Utsumi S, Estell R, McIntosh MM, Funk M, Cox A, Cao H, Spiegal S, Perea A, Cibils AF. Real-Time Monitoring of Grazing Cattle Using LORA-WAN Sensors to Improve Precision in Detecting Animal Welfare Implications via Daily Distance Walked Metrics. Animals (Basel) 2023; 13:2641. [PMID: 37627433 PMCID: PMC10451644 DOI: 10.3390/ani13162641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2023] [Revised: 07/30/2023] [Accepted: 08/09/2023] [Indexed: 08/27/2023] Open
Abstract
Animal welfare monitoring relies on sensor accuracy for detecting changes in animal well-being. We compared the distance calculations based on global positioning system (GPS) data alone or combined with motion data from triaxial accelerometers. The assessment involved static trackers placed outdoors or indoors vs. trackers mounted on cows grazing on pasture. Trackers communicated motion data at 1 min intervals and GPS positions at 15 min intervals for seven days. Daily distance walked was determined using the following: (1) raw GPS data (RawDist), (2) data with erroneous GPS locations removed (CorrectedDist), or (3) data with erroneous GPS locations removed, combined with the exclusion of GPS data associated with no motion reading (CorrectedDist_Act). Distances were analyzed via one-way ANOVA to compare the effects of tracker placement (Indoor, Outdoor, or Animal). No difference was detected between the tracker placement for RawDist. The computation of CorrectedDist differed between the tracker placements. However, due to the random error of GPS measurements, CorrectedDist for Indoor static trackers differed from zero. The walking distance calculated by CorrectedDist_Act differed between the tracker placements, with distances for static trackers not differing from zero. The fusion of GPS and accelerometer data better detected animal welfare implications related to immobility in grazing cattle.
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Affiliation(s)
- Shelemia Nyamuryekung’e
- Division of Food Production and Society, Norwegian Institute of Bioeconomy Research (NIBIO), PB 115, N-1431 Ås, Norway
| | - Glenn Duff
- Department of Animal and Range Sciences, New Mexico State University, Las Cruces, NM 88003, USA; (G.D.); (M.F.); (A.C.); (A.P.)
| | - Santiago Utsumi
- Department of Animal and Range Sciences, New Mexico State University, Las Cruces, NM 88003, USA; (G.D.); (M.F.); (A.C.); (A.P.)
| | - Richard Estell
- United States Department of Agriculture-Agriculture Research Service, Jornada Experimental Range, Las Cruces, NM 88003, USA; (R.E.); (M.M.M.); (S.S.)
| | - Matthew M. McIntosh
- United States Department of Agriculture-Agriculture Research Service, Jornada Experimental Range, Las Cruces, NM 88003, USA; (R.E.); (M.M.M.); (S.S.)
| | - Micah Funk
- Department of Animal and Range Sciences, New Mexico State University, Las Cruces, NM 88003, USA; (G.D.); (M.F.); (A.C.); (A.P.)
| | - Andrew Cox
- Department of Animal and Range Sciences, New Mexico State University, Las Cruces, NM 88003, USA; (G.D.); (M.F.); (A.C.); (A.P.)
| | - Huiping Cao
- Department of Computer Science, New Mexico State University, Las Cruces, NM 88003, USA;
| | - Sheri Spiegal
- United States Department of Agriculture-Agriculture Research Service, Jornada Experimental Range, Las Cruces, NM 88003, USA; (R.E.); (M.M.M.); (S.S.)
| | - Andres Perea
- Department of Animal and Range Sciences, New Mexico State University, Las Cruces, NM 88003, USA; (G.D.); (M.F.); (A.C.); (A.P.)
| | - Andres F. Cibils
- United States Department of Agriculture Southern Plains Climate Hub, United States Department of Aagricultulre-Agriculture Rearch Services, Oklahoma and Central Plains Agricultural Research Center, El Reno, OK 73036, USA;
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11
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Brennan JR, Menendez HM, Ehlert K, Tedeschi LO. ASAS-NANP symposium: mathematical modeling in animal nutrition-Making sense of big data and machine learning: how open-source code can advance training of animal scientists. J Anim Sci 2023; 101:skad317. [PMID: 37997926 PMCID: PMC10664406 DOI: 10.1093/jas/skad317] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2023] [Accepted: 09/21/2023] [Indexed: 11/25/2023] Open
Abstract
Advancements in precision livestock technology have resulted in an unprecedented amount of data being collected on individual animals. Throughout the data analysis chain, many bottlenecks occur, including processing raw sensor data, integrating multiple streams of information, incorporating data into animal growth and nutrition models, developing decision support tools for producers, and training animal science students as data scientists. To realize the promise of precision livestock management technologies, open-source tools and tutorials must be developed to reduce these bottlenecks, which are a direct result of the tremendous time and effort required to create data pipelines from scratch. Open-source programming languages (e.g., R or Python) can provide users with tools to automate many data processing steps for cleaning, aggregating, and integrating data. However, the steps from data collection to training artificial intelligence models and integrating predictions into mathematical models can be tedious for those new to statistical programming, with few examples pertaining to animal science. To address this issue, we outline how open-source code can help overcome many of the bottlenecks that occur in the era of big data and precision livestock technology, with an emphasis on how routine use and publication of open-source code can help facilitate training the next generation of animal scientists. In addition, two case studies are presented with publicly available data and code to demonstrate how open-source tutorials can be utilized to streamline data processing, train machine learning models, integrate with animal nutrition models, and facilitate learning. The National Animal Nutrition Program focuses on providing research-based data on animal performance and feeding strategies. Open-source data and code repositories with examples specific to animal science can help create a reinforcing mechanism aimed at advancing animal science research.
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Affiliation(s)
- Jameson R Brennan
- Department of Animal Science, South Dakota State University West River Research and Extension Center, Rapid City, SD 57701, USA
| | - Hector M Menendez
- Department of Animal Science, South Dakota State University West River Research and Extension Center, Rapid City, SD 57701, USA
| | - Krista Ehlert
- Department of Natural Resource Management, South Dakota State University West River Research and Extension Center, Rapid City, SD 57701, USA
| | - Luis O Tedeschi
- Department of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA
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12
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Tedeschi LO, Menendez HM, Remus A. ASAS-NANP SYMPOSIUM: Mathematical Modeling in Animal Nutrition: Training the Future Generation in Data and Predictive Analytics for Sustainable Development. A Summary of the 2021 and 2022 Symposia. J Anim Sci 2023; 101:skad318. [PMID: 37997923 PMCID: PMC10664387 DOI: 10.1093/jas/skad318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2023] [Accepted: 10/17/2023] [Indexed: 11/25/2023] Open
Affiliation(s)
- Luis O Tedeschi
- Texas A&M University, Department of Animal Science, College Station, TX 77843-2471, USA
| | - Hector M Menendez
- South Dakota State University West River Research and Extension Center, 711 N. Creek Dr. Rapid City, SD, 57701, USA
| | - Aline Remus
- Sherbrooke Research and Development Centre, Agriculture and Agri-Food Canada, 2000 College Street, Sherbrooke, QC J1M 1Z3, Canada
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13
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Kaniyamattam K, Tedeschi LO. ASAS-NANP symposium: mathematical modeling in animal nutrition: agent-based modeling for livestock systems: the mechanics of development and application. J Anim Sci 2023; 101:skad321. [PMID: 37997925 PMCID: PMC10664392 DOI: 10.1093/jas/skad321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Accepted: 09/30/2023] [Indexed: 11/25/2023] Open
Abstract
Over the last three decades, agent-based modeling/model (ABM) has been one of the most powerful and valuable simulation-based decision modeling techniques used to study the complex dynamic interactions between animals and their environment. ABM is a relatively new modeling technique in the animal research arena, with immense potential for routine decision-making in livestock systems. We describe ABM's fundamental characteristics for developing intelligent modeling systems, exemplify its use for livestock production, and describe commonly used software for designing and developing ABM. After that, we discuss several aspects of the developmental mechanics of an ABM, including (1) how livestock researchers can conceptualize and design a model, (2) the main components of an ABM, (3) different statistical methods of analyzing the outputs, and (4) verification, validation, and replication of an ABM. Then, we perform an overall analysis of the utilities of ABM in different subsystems of the livestock systems ranging from epidemiological prediction to nutritional management to livestock market dynamics. Finally, we discuss the concept of hybrid intelligent models (i.e., merging real-time data streams with intelligent ABM), which have applications in artificial intelligence-based decision-making for precision livestock farming. ABM captures individual agents' characteristics, interactions, and the emergent properties that arise from these interactions; thus, animal scientists can benefit from ABM in multiple ways, including understanding system-level outcomes, analyzing agent behaviors, exploring different scenarios, and evaluating policy interventions. Several platforms for building ABM exist (e.g., NetLogo, Repast J, and AnyLogic), but they have unique features making one more suitable for solving specific problems. The strengths of ABM can be combined with other modeling approaches, including artificial intelligence, allowing researchers to advance our understanding further and contribute to sustainable livestock management practices. There are many ways to develop and apply mathematical models in livestock production that might assist with sustainable development. However, users must be experienced when choosing the appropriate modeling technique and computer platform (i.e., modeling development tool) that will facilitate the adoption of mathematical models by certifying that the model is field-ready and versatile enough for untrained users.
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Affiliation(s)
- Karun Kaniyamattam
- Department of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA
| | - Luis O Tedeschi
- Department of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA
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14
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Kaur U, Malacco VMR, Bai H, Price TP, Datta A, Xin L, Sen S, Nawrocki RA, Chiu G, Sundaram S, Min BC, Daniels KM, White RR, Donkin SS, Brito LF, Voyles RM. Invited review: integration of technologies and systems for precision animal agriculture-a case study on precision dairy farming. J Anim Sci 2023; 101:skad206. [PMID: 37335911 PMCID: PMC10370899 DOI: 10.1093/jas/skad206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 06/17/2023] [Indexed: 06/21/2023] Open
Abstract
Precision livestock farming (PLF) offers a strategic solution to enhance the management capacity of large animal groups, while simultaneously improving profitability, efficiency, and minimizing environmental impacts associated with livestock production systems. Additionally, PLF contributes to optimizing the ability to manage and monitor animal welfare while providing solutions to global grand challenges posed by the growing demand for animal products and ensuring global food security. By enabling a return to the "per animal" approach by harnessing technological advancements, PLF enables cost-effective, individualized care for animals through enhanced monitoring and control capabilities within complex farming systems. Meeting the nutritional requirements of a global population exponentially approaching ten billion people will likely require the density of animal proteins for decades to come. The development and application of digital technologies are critical to facilitate the responsible and sustainable intensification of livestock production over the next several decades to maximize the potential benefits of PLF. Real-time continuous monitoring of each animal is expected to enable more precise and accurate tracking and management of health and well-being. Importantly, the digitalization of agriculture is expected to provide collateral benefits of ensuring auditability in value chains while assuaging concerns associated with labor shortages. Despite notable advances in PLF technology adoption, a number of critical concerns currently limit the viability of these state-of-the-art technologies. The potential benefits of PLF for livestock management systems which are enabled by autonomous continuous monitoring and environmental control can be rapidly enhanced through an Internet of Things approach to monitoring and (where appropriate) closed-loop management. In this paper, we analyze the multilayered network of sensors, actuators, communication, networking, and analytics currently used in PLF, focusing on dairy farming as an illustrative example. We explore the current state-of-the-art, identify key shortcomings, and propose potential solutions to bridge the gap between technology and animal agriculture. Additionally, we examine the potential implications of advancements in communication, robotics, and artificial intelligence on the health, security, and welfare of animals.
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Affiliation(s)
- Upinder Kaur
- School of Engineering Technology, Purdue University, West Lafayette, IN, 47907, USA
| | - Victor M R Malacco
- Department of Animal Sciences, Purdue University, West Lafayette, IN, 47907, USA
| | - Huiwen Bai
- School of Engineering Technology, Purdue University, West Lafayette, IN, 47907, USA
| | - Tanner P Price
- Department of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
| | - Arunashish Datta
- School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, 47907, USA
| | - Lei Xin
- School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, 47907, USA
| | - Shreyas Sen
- School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, 47907, USA
| | - Robert A Nawrocki
- School of Engineering Technology, Purdue University, West Lafayette, IN, 47907, USA
| | - George Chiu
- School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, 47907, USA
- School of Mechanical Engineering, Purdue University, West Lafayette, IN, 47907, USA
| | - Shreyas Sundaram
- School of Electrical and Computer Engineering, Purdue University, West Lafayette, IN, 47907, USA
| | - Byung-Cheol Min
- Department of Computer and Information Technology, West Lafayette, IN, 47907, USA
| | - Kristy M Daniels
- Department of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
| | - Robin R White
- Department of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA, 24061, USA
| | - Shawn S Donkin
- Department of Animal Sciences, Purdue University, West Lafayette, IN, 47907, USA
| | - Luiz F Brito
- Department of Animal Sciences, Purdue University, West Lafayette, IN, 47907, USA
| | - Richard M Voyles
- School of Engineering Technology, Purdue University, West Lafayette, IN, 47907, USA
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15
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Riego del Castillo V, Sánchez-González L, Campazas-Vega A, Strisciuglio N. Vision-Based Module for Herding with a Sheepdog Robot. SENSORS (BASEL, SWITZERLAND) 2022; 22:5321. [PMID: 35891009 PMCID: PMC9317257 DOI: 10.3390/s22145321] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 07/08/2022] [Accepted: 07/12/2022] [Indexed: 06/15/2023]
Abstract
Livestock farming is assisted more and more by technological solutions, such as robots. One of the main problems for shepherds is the control and care of livestock in areas difficult to access where grazing animals are attacked by predators such as the Iberian wolf in the northwest of the Iberian Peninsula. In this paper, we propose a system to automatically generate benchmarks of animal images of different species from iNaturalist API, which is coupled with a vision-based module that allows us to automatically detect predators and distinguish them from other animals. We tested multiple existing object detection models to determine the best one in terms of efficiency and speed, as it is conceived for real-time environments. YOLOv5m achieves the best performance as it can process 64 FPS, achieving an mAP (with IoU of 50%) of 99.49% for a dataset where wolves (predator) or dogs (prey) have to be detected and distinguished. This result meets the requirements of pasture-based livestock farms.
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Affiliation(s)
- Virginia Riego del Castillo
- Departamento de Ingenierías Mecánica, Informática y Aeroespacial, Universidad de León, 24071 León, Spain; (V.R.d.C.); (A.C.-V.)
| | - Lidia Sánchez-González
- Departamento de Ingenierías Mecánica, Informática y Aeroespacial, Universidad de León, 24071 León, Spain; (V.R.d.C.); (A.C.-V.)
| | - Adrián Campazas-Vega
- Departamento de Ingenierías Mecánica, Informática y Aeroespacial, Universidad de León, 24071 León, Spain; (V.R.d.C.); (A.C.-V.)
| | - Nicola Strisciuglio
- Faculty of Electrical Engineering, Mathematics and Computer Science, University of Twente, 7522 NB Enschede, The Netherlands;
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16
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Tedeschi LO. ASAS-NANP symposium: mathematical modeling in animal nutrition: the progression of data analytics and artificial intelligence in support of sustainable development in animal science. J Anim Sci 2022; 100:6567454. [PMID: 35412610 PMCID: PMC9171329 DOI: 10.1093/jas/skac111] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2022] [Accepted: 04/09/2022] [Indexed: 12/01/2022] Open
Abstract
A renewed interest in data analytics and decision support systems in developing automated computer systems is facilitating the emergence of hybrid intelligent systems by combining artificial intelligence (AI) algorithms with classical modeling paradigms such as mechanistic modeling (HIMM) and agent-based models (iABM). Data analytics have evolved remarkably, and the scientific community may not yet fully grasp the power and limitations of some tools. Existing statistical assumptions might need to be re-assessed to provide a more thorough competitive advantage in animal production systems towards sustainability. This paper discussed the evolution of data analytics from a competitive advantage perspective within academia and illustrated the combination of different advanced technological systems in developing HIMM. The progress of analytical tools was divided into three stages: collect and respond, predict and prescribe, and smart learning and policy making, depending on the level of their sophistication (simple to complicated analysis). The collect and respond stage is responsible for ensuring the data is correct and free of influential data points, and it represents the data and information phases for which data are cataloged and organized. The predict and prescribe stage results in gained knowledge from the data and comprises most predictive modeling paradigms, and optimization and risk assessment tools are used to prescribe future decision-making opportunities. The third stage aims to apply the information obtained in the previous stages to foment knowledge and use it for rational decisions. This stage represents the pinnacle of acquired knowledge that leads to wisdom, and AI technology is intrinsic. Although still incipient, HIMM and iABM form the forthcoming stage of competitive advantage. HIMM may not increase our ability to understand the underlying mechanisms controlling the outcomes of a system, but it may increase the predictive ability of existing models by helping the analyst explain more of the data variation. The scientific community still has some issues to be resolved, including the lack of transparency and reporting of AI that might limit code reproducibility. It might be prudent for the scientific community to avoid the shiny object syndrome (i.e., AI) and look beyond the current knowledge to understand the mechanisms that might improve productivity and efficiency to lead agriculture towards sustainable and responsible achievements.
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Affiliation(s)
- Luis O Tedeschi
- Department of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA
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17
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Jacobs M, Remus A, Gaillard C, Menendez HM, Tedeschi LO, Neethirajan S, Ellis JL. ASAS-NANP symposium: mathematical modeling in animal nutrition: limitations and potential next steps for modeling and modelers in the animal sciences. J Anim Sci 2022; 100:skac132. [PMID: 35419602 PMCID: PMC9171330 DOI: 10.1093/jas/skac132] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Accepted: 04/08/2022] [Indexed: 11/12/2022] Open
Abstract
The field of animal science, and especially animal nutrition, relies heavily on modeling to accomplish its day-to-day objectives. New data streams ("big data") and the exponential increase in computing power have allowed the appearance of "new" modeling methodologies, under the umbrella of artificial intelligence (AI). However, many of these modeling methodologies have been around for decades. According to Gartner, technological innovation follows five distinct phases: technology trigger, peak of inflated expectations, trough of disillusionment, slope of enlightenment, and plateau of productivity. The appearance of AI certainly elicited much hype within agriculture leading to overpromised plug-and-play solutions in a field heavily dependent on custom solutions. The threat of failure can become real when advertising a disruptive innovation as sustainable. This does not mean that we need to abandon AI models. What is most necessary is to demystify the field and place a lesser emphasis on the technology and more on business application. As AI becomes increasingly more powerful and applications start to diverge, new research fields are introduced, and opportunities arise to combine "old" and "new" modeling technologies into hybrids. However, sustainable application is still many years away, and companies and universities alike do well to remain at the forefront. This requires investment in hardware, software, and analytical talent. It also requires a strong connection to the outside world to test, that which does, and does not work in practice and a close view of when the field of agriculture is ready to take its next big steps. Other research fields, such as engineering and automotive, have shown that the application power of AI can be far reaching but only if a realistic view of models as whole is maintained. In this review, we share our view on the current and future limitations of modeling and potential next steps for modelers in the animal sciences. First, we discuss the inherent dependencies and limitations of modeling as a human process. Then, we highlight how models, fueled by AI, can play an enhanced sustainable role in the animal sciences ecosystem. Lastly, we provide recommendations for future animal scientists on how to support themselves, the farmers, and their field, considering the opportunities and challenges the technological innovation brings.
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Affiliation(s)
- Marc Jacobs
- FR Analytics B.V., 7642 AP Wierden, The Netherlands
| | - Aline Remus
- Sherbrooke Research and Development Centre, Sherbrooke, QC J1M 1Z3, Canada
| | | | - Hector M Menendez
- Department of Animal Science, South Dakota State University, Rapid City, SD 57702, USA
| | - Luis O Tedeschi
- Department of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA
| | - Suresh Neethirajan
- Farmworx, Adaptation Physiology, Animal Sciences Group, Wageningen University, 6700 AH, The Netherlands
| | - Jennifer L Ellis
- Department of Animal Biosciences, University of Guelph, Guelph, ON N1G 2W1, Canada
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18
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Menendez HM, Brennan JR, Gaillard C, Ehlert K, Quintana J, Neethirajan S, Remus A, Jacobs M, Teixeira IAMA, Turner BL, Tedeschi LO. ASAS-NANP SYMPOSIUM: MATHEMATICAL MODELING IN ANIMAL NUTRITION: Opportunities and Challenges of Confined and Extensive Precision Livestock Production. J Anim Sci 2022; 100:6577180. [PMID: 35511692 PMCID: PMC9171331 DOI: 10.1093/jas/skac160] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2022] [Accepted: 04/28/2022] [Indexed: 11/18/2022] Open
Abstract
Modern animal scientists, industry, and managers have never faced a more complex world. Precision livestock technologies have altered management in confined operations to meet production, environmental, and consumer goals. Applications of precision technologies have been limited in extensive systems such as rangelands due to lack of infrastructure, electrical power, communication, and durability. However, advancements in technology have helped to overcome many of these challenges. Investment in precision technologies is growing within the livestock sector, requiring the need to assess opportunities and challenges associated with implementation to enhance livestock production systems. In this review, precision livestock farming and digital livestock farming are explained in the context of a logical and iterative five-step process to successfully integrate precision livestock measurement and management tools, emphasizing the need for precision system models (PSMs). This five-step process acts as a guide to realize anticipated benefits from precision technologies and avoid unintended consequences. Consequently, the synthesis of precision livestock and modeling examples and key case studies help highlight past challenges and current opportunities within confined and extensive systems. Successfully developing PSM requires appropriate model(s) selection that aligns with desired management goals and precision technology capabilities. Therefore, it is imperative to consider the entire system to ensure that precision technology integration achieves desired goals while remaining economically and managerially sustainable. Achieving long-term success using precision technology requires the next generation of animal scientists to obtain additional skills to keep up with the rapid pace of technology innovation. Building workforce capacity and synergistic relationships between research, industry, and managers will be critical. As the process of precision technology adoption continues in more challenging and harsh, extensive systems, it is likely that confined operations will benefit from required advances in precision technology and PSMs, ultimately strengthening the benefits from precision technology to achieve short- and long-term goals.
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Affiliation(s)
- H M Menendez
- Department of Animal Science (Menendez, Brennan, Quintana); Department of Natural Resource Management (Ehlert); South Dakota State University, 711 N. Creek Drive, Rapid City, South Dakota, 57702, USA
| | - J R Brennan
- Department of Animal Science (Menendez, Brennan, Quintana); Department of Natural Resource Management (Ehlert); South Dakota State University, 711 N. Creek Drive, Rapid City, South Dakota, 57702, USA
| | - C Gaillard
- Institut Agro, PEGASE, INRAE, 35590 Saint Gilles, France
| | - K Ehlert
- Department of Animal Science (Menendez, Brennan, Quintana); Department of Natural Resource Management (Ehlert); South Dakota State University, 711 N. Creek Drive, Rapid City, South Dakota, 57702, USA
| | - J Quintana
- Department of Animal Science (Menendez, Brennan, Quintana); Department of Natural Resource Management (Ehlert); South Dakota State University, 711 N. Creek Drive, Rapid City, South Dakota, 57702, USA
| | - Suresh Neethirajan
- Farmworx, Adaptation Physiology, Animal Sciences Group, Wageningen University, 6700 AH, The Netherlands
| | - A Remus
- Sherbrooke Research and Development Centre, 2000 College Street, Sherbrooke, QC J1M 1Z3, Canada
| | - M Jacobs
- FR Analytics B.V., 7642 AP Wierden, The Netherlands
| | - I A M A Teixeira
- Department of Animal, Veterinary, and Food Sciences, University of Idaho, Twin Falls, ID 83301, USA
| | - B L Turner
- Department of Agriculture, Agribusiness, and Environmental Science, and King Ranch® Institute for Ranch Management, Texas A&M University-Kingsville, 700 University Blvd MSC 228, Kingsville, TX 78363, USA
| | - L O Tedeschi
- Department of Animal Science, Texas A&M University, College Station, TX 77843-2471, USA
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19
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Williams T, Wilson C, Wynn P, Costa D. Opportunities for precision livestock management in the face of climate change: a focus on extensive systems. Anim Front 2021; 11:63-68. [PMID: 34676141 PMCID: PMC8527464 DOI: 10.1093/af/vfab065] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022] Open
Affiliation(s)
- Thomas Williams
- Institute for Future Farming Systems, Central Queensland University, Rockhampton, QLD, Australia
| | - Cara Wilson
- Institute for Future Farming Systems, Central Queensland University, Rockhampton, QLD, Australia
| | - Peter Wynn
- School of Animal and Veterinary Sciences, Faculty of Science, Charles Sturt University, Wagga Wagga, NSW, Australia.,EH Graham Centre for Agricultural Innovation, Charles Sturt University, Wagga Wagga, NSW, Australia
| | - Diogo Costa
- Institute for Future Farming Systems, Central Queensland University, Rockhampton, QLD, Australia
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20
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Greenwood PL. Review: An overview of beef production from pasture and feedlot globally, as demand for beef and the need for sustainable practices increase. Animal 2021; 15 Suppl 1:100295. [PMID: 34274250 DOI: 10.1016/j.animal.2021.100295] [Citation(s) in RCA: 51] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2020] [Revised: 01/31/2021] [Accepted: 02/05/2021] [Indexed: 01/09/2023] Open
Abstract
Beef is a high-quality source of protein that also can provide highly desirable eating experiences, and demand is increasing globally. Sustainability of beef industries requires high on-farm efficiency and productivity, and efficient value-chains that reward achievement of target-market specifications. These factors also contribute to reduced environmental and animal welfare impacts necessary for provenance and social licence to operate. This review provides an overview of beef industries, beef production, and beef production systems globally, including more productive and efficient industries, systems and practices. Extensive beef production systems typically include pasture-based cow-calf and stocker-backgrounding or grow-out systems, and pasture or feedlot finishing. Cattle in pasture-based systems are subject to high levels of environmental variation to which specific genotypes are better suited. Strategic nutritional supplementation can be provided within these systems to overcome deficiencies in the amount and quality of pasture- or forage-based feed for the breeding herd and for younger offspring prior to a finishing period. More intensive systems can maintain more control over nutrition and the environment and are more typically used for beef and veal from dairy breeds, crosses between beef and dairy breeds, and during finishing of beef cattle to assure product quality and specifications. Cull cows and heifers from beef seedstock and cow-calf operations and dairy enterprises that are mostly sent directly to abattoirs are also important in beef production. Beef production systems that use beef breeds should target appropriate genotypes and high productivity relative to maintenance for the breeding herd and for growing and finishing cattle. This maximizes income and limits input costs particularly feed costs which may be 60% or more of production costs. Digital and other technologies that enable rapid capture and use of environmental and cattle performance data, even within extensive systems, should enhance beef industry productivity, efficiency, animal welfare and sustainability.
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Affiliation(s)
- Paul L Greenwood
- NSW Department of Primary Industries, Livestock Industries Centre, J.S.F. Barker Building, Trevenna Road, UNE Armidale, NSW 2351, Australia.
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