Cryptic species conservation: a review

Cryptic species are groups of two or more taxa that were previously classified as single nominal species. Being almost morphologically indistinguishable, cryptic species have historically been hard to detect. Only through modern morphometric, genetic, and molecular analyses has the hidden biodiversity of cryptic species complexes been revealed. Cryptic diversity is now widely acknowledged, but unlike more recognisable, charismatic species, scientists face additional challenges when studying cryptic taxa and protecting their wild populations. Demographical and ecological data are vital to facilitate and inform successful conservation actions, particularly at the individual species level, yet this information is lacking for many cryptic species due to their recent taxonomic description and lack of research attention. The first part of this article summarises cryptic speciation and diversity, and explores the numerous barriers and considerations that conservation biologists must navigate to detect, study and manage cryptic species populations effectively. The second part of the article seeks to address how we can overcome the challenges associated with efficiently and non-invasively detecting cryptic species in-situ, and filling vital knowledge gaps that are currently inhibiting applied conservation. The final section discusses future directions, and suggests that large-scale, holistic, and collaborative approaches that build upon successful existing applications will be vital for cryptic species conservation. This article also acknowledges that sufficient data to implement effective species-specific conservation will be difficult to attain for many cryptic animals, and protected area networks will be vital for their conservation in the short term.

Effects of forest fragmentation on the dietary ecology and activity of a nocturnal lemur community in North West Madagascar

Deforestation and habitat fragmentation is the primary threat to primate populations. The primates that live within degraded and anthropogenically disturbed habitats typical of fragmented landscapes have to cope with lower availability of resources in comparison to primates in continuous, undisturbed forests. While some species are sensitive to forest fragmentation, some evidence exists to suggest that primates can alter their behavior and adapt to such changes, which enables their survival in suboptimal habitat. In this study, we assessed how forest fragmentation and its associated edge-effects impact the feeding ecology and activity levels of a nocturnal primate community in the Sahamalaza-Iles Radama National Park, North West Madagascar. From March 06, 2019 to May 17, 2022, we collected data on tree and invertebrate phenology at our study site, and feeding ecology and activity for 159 lemur individuals from four species. Fruit and flower availability varied significantly between continuous and fragmented forest, and between forest core and edge areas, with continuous forest exhibiting higher continuous fruit and flower availability. Lemur feeding ecology varied significantly too, as the feeding niches of all four species were significantly different between continuous and fragmented forest and between core and edge areas. However, lemur activity levels were mostly consistent among all forest areas. The results of this study suggest that nocturnal lemurs are able to adapt their dietary ecology in response to the available food sources within their habitat. Due to this flexible ecology and dietary plasticity, the lemurs do not need to significantly alter their behavior in different environments to fulfill their dietary needs. While nocturnal lemurs demonstrate adaptability and flexibility to degraded habitat, it is unclear how far this plasticity will stretch considering that Madagascar's forests are still being cleared at an alarming rate. Urgent conservation action is therefore needed to ensure the future of lemur habitat.

Conservation value of vanilla agroecosystems for vertebrate diversity in north-east Madagascar

As a result of increasing global demand for food, large areas of natural habitat are being converted to agroecosystems to accommodate crop cultivation. This agricultural expansion is most prominent in the tropics, where many rural communities are dependent solely on farming income for their livelihoods. Such agricultural land conversion can have severe implications for local fauna. In this study, we compared vertebrate species diversity between natural forest habitat and three types of vanilla plantations maintained under varying management regimes in north-east Madagascar. We used diurnal and nocturnal transects to survey vertebrate diversity. Natural forest habitat contained the greatest vertebrate species diversity, and had proportionally more threatened and endemic species than all vanilla plantation types. However, we observed a greater number of species and a higher inverse Simpson index in minimally managed vanilla plantations located within or near natural forest compared to intensively managed vanilla plantations. These findings are important and encouraging for animal conservation and sustainable crop cultivation in Madagascar, and suggest that newly created vanilla plantations, and already existing plantations, should endeavour to follow the more traditional, minimalistic management approach to improve sustainability and promote higher faunal diversity.

Toward Passive Acoustic Monitoring of Lemurs: Using an Affordable Open-Source System to Monitor Phaner Vocal Activity and Density

Developing new cost-effective methods for monitoring the distribution and abundance of species is essential for conservation biology. Passive acoustic monitoring (PAM) has long been used in marine mammals and has recently been postulated to be a promising method to improve monitoring of terrestrial wildlife as well. Because Madagascar’s lemurs are among the globally most threatened taxa, this study was designed to assess the applicability of an affordable and open-source PAM device to estimate the density of pale fork-marked lemurs (Phaner pallescens). Using 12 playback experiments and one fixed transect of four automated acoustic recorders during one night of the dry season in Kirindy Forest, we experimentally estimated the detection space for Phaner and other lemur vocalizations. Furthermore, we manually annotated more than 10,000 vocalizations of Phaner from a single location and used bout rates from previous studies to estimate density within the detection space. To truncate detections beyond 150 m, we applied a sound pressure level (SPL) threshold filtering out vocalizations below SPL 50 (dB re 20 μPa). During the dry season, vocalizations of Phaner can be detected with confidence beyond 150 m by a human listener. Within our fixed truncated detection area corresponding to an area of 0.07 km2 (detection radius of 150 m), we estimated 10.5 bouts per hour corresponding to a density of Phaner of 38.6 individuals/km2. Our density estimates are in line with previous estimates based on individually marked animals conducted in the same area. Our findings suggest that PAM also could be combined with distance sampling methods to estimate densities. We conclude that PAM is a promising method to improve the monitoring and conservation of Phaner and many other vocally active primates.

Environmental drivers of Cheirogaleidae population density: Remarkable resilience of Madagascar's smallest lemurs to habitat degradation

AIM

Global animal populations are in decline due to destruction and degradation of their natural habitat. Understanding the factors that determine the distribution and density of threatened animal populations is therefore now a crucial component of their study and conservation. The Cheirogaleidae are a diverse family of small-bodied, nocturnal lemurs that are widespread throughout the forests of Madagascar. However, many cheirogaleid lemurs are now highly threatened with extinction and the environmental factors that determine their distribution and population density are still little known. Here, I investigated the environmental drivers of Cheirogaleidae population density at genus level.

LOCATION

Various forest sites across Madagascar.

METHODS

I investigated how six environmental variables affect Cheirogaleidae population density at the genus level via random-effect meta-analyses. I then used a generalized linear mixed-effects model to identify the primary predictors of Cheirogaleidae population density. Finally, I investigated how the population density of this family of lemurs varies between protected and unprotected areas of Madagascar via a GLM analysis.

RESULTS

My results indicate that the relationships between the tested environmental factors and population density are genus-specific among the Cheirogaleidae. Rather remarkably, the density of Microcebus appears to have a profoundly positive relationship with anthropogenic disturbance and a negative relationship with forest cover, a finding that is also reflected by larger population densities within unprotected areas in comparison with localities within Madagascar's protected area network.

MAIN CONCLUSIONS

The results of this study are highly encouraging for the conservation of the Cheirogaleidae and highlight the remarkable resilience of these lemurs to habitat degradation and anthropogenic activity. However, this study also outlines the dearth of knowledge that we have for many species, and why these data are urgently needed to understand the biogeography and ecology of threatened animal populations and implement successful conservation.