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Waterworth W, Balobaid A, West C. Seed longevity and genome damage. Biosci Rep 2024; 44:BSR20230809. [PMID: 38324350 PMCID: PMC11111285 DOI: 10.1042/bsr20230809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2023] [Revised: 02/06/2024] [Accepted: 02/07/2024] [Indexed: 02/08/2024] Open
Abstract
Seeds are the mode of propagation for most plant species and form the basis of both agriculture and ecosystems. Desiccation tolerant seeds, representative of most crop species, can survive maturation drying to become metabolically quiescent. The desiccated state prolongs embryo viability and provides protection from adverse environmental conditions, including seasonal periods of drought and freezing often encountered in temperate regions. However, the capacity of the seed to germinate declines over time and culminates in the loss of seed viability. The relationship between environmental conditions (temperature and humidity) and the rate of seed deterioration (ageing) is well defined, but less is known about the biochemical and genetic factors that determine seed longevity. This review will highlight recent advances in our knowledge that provide insight into the cellular stresses and protective mechanisms that promote seed survival, with a focus on the roles of DNA repair and response mechanisms. Collectively, these pathways function to maintain the germination potential of seeds. Understanding the molecular basis of seed longevity provides important new genetic targets for the production of crops with enhanced resilience to changing climates and knowledge important for the preservation of plant germplasm in seedbanks.
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Affiliation(s)
- Wanda Waterworth
- Centre for Plant Sciences, University of Leeds, Woodhouse Lane, Leeds LS2
9JT, U.K
| | - Atheer Balobaid
- Centre for Plant Sciences, University of Leeds, Woodhouse Lane, Leeds LS2
9JT, U.K
| | - Chris West
- Centre for Plant Sciences, University of Leeds, Woodhouse Lane, Leeds LS2
9JT, U.K
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2
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Jhanji S, Goyal E, Chumber M, Kaur G. Exploring fine tuning between phytohormones and ROS signaling cascade in regulation of seed dormancy, germination and seedling development. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2024; 207:108352. [PMID: 38266558 DOI: 10.1016/j.plaphy.2024.108352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2023] [Revised: 12/18/2023] [Accepted: 01/08/2024] [Indexed: 01/26/2024]
Abstract
In higher plants, seed is a propagule which ensures dissemination and survival of species. Developmental phases of a seed comprise embryogenesis, maturation and germination paving a way to its final fate i.e. seedling establishment. The final stage of seed maturation is marked by dehydration, acquisition of dessication tolerance and induction of dormancy. A precise Abscisic acid (ABA) to Gibberellins (GA) ratio, accumulation of miRNA 156, low level of reactive oxygen species (ROS) and enzyme inactivity govern seed dormancy. This also prevent pre harvest sprouting of the seeds. Overtime, stored seed mRNAs and proteins are degraded through oxidation of specific nucleotides in response to ROS accumulation. This degradation alleviates seed dormancy and transforms a dormant seed into a germinating seed. At this stage, ABA catabolism and degradation accompanied by GA synthesis contribute to low ABA to GA ratio. GA as well as ROS acts downstream, to mobilize reserve food materials, rupture testa, enhance imbibition and protrude radicle. All these events mark seed germination. Further, seedling is established under the governance of auxin and light. ABA and GA are master regulators while auxin, cytokinins, ethylene, jasmonic acid, brassinosteroids act through interdependent pathways to tightly regulate seed dormancy, germination and seedling establishment. In this review, the role of phytohormones and ROS in accordance with environmental factors in governing seed dormancy, promoting seed germination and thus, establishing a seedling is discussed in detail.
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Affiliation(s)
- Shalini Jhanji
- Department of Floriculture and Landscaping, Punjab Agricultural University, Ludhiana, 141004, India.
| | - Eena Goyal
- Department of Botany, Punjab Agricultural University, Ludhiana, 141004, India
| | - Manisha Chumber
- Department of Botany, Punjab Agricultural University, Ludhiana, 141004, India
| | - Gurpreet Kaur
- Department of Botany, Punjab Agricultural University, Ludhiana, 141004, India
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3
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Doll NM, Van Hautegem T, Schilling N, De Rycke R, De Winter F, Fendrych M, Nowack MK. Endosperm cell death promoted by NAC transcription factors facilitates embryo invasion in Arabidopsis. Curr Biol 2023; 33:3785-3795.e6. [PMID: 37633282 PMCID: PMC7615161 DOI: 10.1016/j.cub.2023.08.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 07/27/2023] [Accepted: 08/01/2023] [Indexed: 08/28/2023]
Abstract
In flowering plants, two fertilization products develop within the limited space of the seed: the embryo and the surrounding nutritive endosperm. The final size of the endosperm is modulated by the degree of embryo growth. In Arabidopsis thaliana, the endosperm expands rapidly after fertilization, but later gets invaded by the embryo that occupies most of the seed volume at maturity, surrounded by a single remaining aleurone-like endosperm layer.1,2,3,4 Embryo invasion is facilitated by the endosperm-expressed bHLH-type transcription factor ZHOUPI, which promotes weakening of endosperm cell walls.5,6 Endosperm elimination in zou mutants is delayed, and embryo growth is severely affected; the endosperm finally collapses around the dwarf embryo, causing the shriveled appearance of mature zou seeds.5,6,7 However, whether ZHOUPI facilitates mechanical endosperm destruction by the invading embryo or whether an active programmed cell death (PCD) process causes endosperm elimination has been subject to debate.2,8 Here we show that developmental PCD controlled by multiple NAC transcription factors in the embryo-adjacent endosperm promotes gradual endosperm elimination. Misexpressing the NAC transcription factor KIRA1 in the entire endosperm caused total endosperm elimination, generating aleurone-less mature seeds. Conversely, dominant and recessive higher-order NAC mutants led to delayed endosperm elimination and impaired cell corpse clearance. Promoting PCD in the zhoupi mutant partially rescued its embryo growth defects, while the endosperm in a zhoupi nac higher-order mutant persisted until seed desiccation. These data suggest that a combination of cell wall weakening and PCD jointly facilitates embryo invasion by an active auto-elimination of endosperm cells.
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Affiliation(s)
- Nicolas M Doll
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; VIB-UGENT Center of Plant Systems Biology, 9052 Ghent, Belgium.
| | - Tom Van Hautegem
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; VIB-UGENT Center of Plant Systems Biology, 9052 Ghent, Belgium
| | - Neeltje Schilling
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; VIB-UGENT Center of Plant Systems Biology, 9052 Ghent, Belgium; Institute of Biochemistry and Biology, Potsdam University, Potsdam, 14476 OT Golm, Germany
| | - Riet De Rycke
- Department of Biomedical Molecular Biology, Ghent University, 9052 Ghent, Belgium; VIB Center for Inflammation Research, Ghent University, 9052 Ghent, Belgium; VIB Bioimaging Core, Ghent University, 9052 Ghent, Belgium
| | - Freya De Winter
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; VIB-UGENT Center of Plant Systems Biology, 9052 Ghent, Belgium
| | - Matyáš Fendrych
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; VIB-UGENT Center of Plant Systems Biology, 9052 Ghent, Belgium
| | - Moritz K Nowack
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; VIB-UGENT Center of Plant Systems Biology, 9052 Ghent, Belgium.
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QTL Mapping and Candidate Gene Analysis for Seed Germination Response to Low Temperature in Rice. Int J Mol Sci 2022; 23:ijms23137379. [PMID: 35806382 PMCID: PMC9266303 DOI: 10.3390/ijms23137379] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Revised: 06/30/2022] [Accepted: 06/30/2022] [Indexed: 12/01/2022] Open
Abstract
Low temperature is a serious threat to the seed emergence of rice, which has become one of the main limiting factors affecting rice production in the world. It is of great significance to find the candidate genes controlling low-temperature tolerance during seed germination and study their functions for breeding new rice cultivars with immense low-temperature tolerance during seed germination. In the current experiment, 120 lines of the Cheongcheong Nagdong Double Haploid (CNDH) population were used for quantitative trait locus (QTL) analysis of low-temperature germinability. The results showed a significant difference in germination under low different temperature (LDT) (15 °C, 20 °C) conditions. In total, four QTLs were detected on chromosome 3, 6, and 8. A total of 41 genes were identified from all the four QTLs, among them, 25 genes were selected by gene function annotation and further screened through quantitative real-time polymerase chain reaction (qRT-PCR). Based on gene function annotation and level of expression under low-temperature, our study suggested the OsGPq3 gene as a candidate gene controlling viviparous germination, ABA and GA signaling under low-temperature. This study will provide a theoretical basis for marker-assisted breeding and lay the basis for further mining molecular mechanisms of low-temperature germination tolerance in rice.
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Hay FR, Rezaei S, Buitink J. Seed Moisture Isotherms, Sorption Models, and Longevity. FRONTIERS IN PLANT SCIENCE 2022; 13:891913. [PMID: 35720538 PMCID: PMC9201756 DOI: 10.3389/fpls.2022.891913] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Accepted: 05/09/2022] [Indexed: 05/26/2023]
Abstract
Seed moisture sorption isotherms show the equilibrium relationship between water content and equilibrium relative humidity (eRH) when seeds are either losing water from a hydrated state (desorption isotherm) or gaining water from a dry state (adsorption isotherm). They have been used in food science to predict the stability of different products and to optimize drying and/or processing. Isotherms have also been applied to understand the physiological processes occurring in viable seeds and how sorption properties differ in relation to, for example, developmental maturity, degree of desiccation tolerance, or dormancy status. In this review, we describe how sorption isotherms can help us understand how the longevity of viable seeds depends upon how they are dried and the conditions under which they are stored. We describe different ways in which isotherms can be determined, how the data are modeled using various theoretical and non-theoretical equations, and how they can be interpreted in relation to storage stability.
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Affiliation(s)
- Fiona R. Hay
- Department of Agroecology, University of Aarhus, Slagelse, Denmark
| | - Shabnam Rezaei
- Department of Agroecology, University of Aarhus, Slagelse, Denmark
| | - Julia Buitink
- Université d'Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, Angers, France
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Zhao B, Zhang H, Chen T, Ding L, Zhang L, Ding X, Zhang J, Qian Q, Xiang Y. Sdr4 dominates pre-harvest sprouting and facilitates adaptation to local climatic condition in Asian cultivated rice. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2022; 64:1246-1263. [PMID: 35442537 DOI: 10.1111/jipb.13266] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2022] [Accepted: 04/18/2022] [Indexed: 06/14/2023]
Abstract
Pre-harvest sprouting (PHS), which reduces grain yield and quality, is controlled by seed dormancy genes. Because few dormancy-related genes have been cloned, the genetic basis of seed dormancy in rice (Oryza sativa L.) remains unclear. Here, we performed a genome-wide association study and linkage mapping to dissect the genetic basis of seed dormancy in rice. Our findings suggest that Seed Dormancy4 (Sdr4), a central modulator of seed dormancy, integrates the abscisic acid and gibberellic acid signaling pathways at the transcriptional level. Haplotype analysis revealed that three Sdr4 alleles in rice cultivars already existed in ancestral Oryza rufipogon accessions. Furthermore, like the semi-dwarf 1 (SD1) and Rc loci, Sdr4 underwent selection during the domestication and improvement of Asian cultivated rice. The distribution frequency of the Sdr4-n allele in different locations in Asia is negatively associated with local annual temperature and precipitation. Finally, we developed functional molecular markers for Sdr4, SD1, and Rc for use in molecular breeding. Our results provide clues about the molecular basis of Sdr4-regulated seed dormancy. Moreover, these findings provide guidance for utilizing the favorable alleles of Sdr4 and Rc to synergistically boost PHS resistance, yield, and quality in modern rice varieties.
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Affiliation(s)
- Bo Zhao
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
| | - Hui Zhang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
- Shanxi Key Laboratory of Minor Crop Germplasm Innovation and Molecular Breeding, College of Life Sciences, Shanxi Agricultural University, Taigu, 030801, China
| | - Tianxiao Chen
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
| | - Ling Ding
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
| | - Liying Zhang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
| | - Xiali Ding
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
| | - Jun Zhang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
| | - Qian Qian
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, 310006, China
| | - Yong Xiang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, 518120, China
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Dong X, Sun L, Agarwal M, Maker G, Han Y, Yu X, Ren Y. The Effect of Ozone Treatment on Metabolite Profile of Germinating Barley. Foods 2022; 11:foods11091211. [PMID: 35563933 PMCID: PMC9104593 DOI: 10.3390/foods11091211] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Revised: 04/11/2022] [Accepted: 04/20/2022] [Indexed: 12/25/2022] Open
Abstract
Ozone is widely used to control pests in grain and impacts seed germination, a crucial stage in crop establishment which involves metabolic alterations. In this study, dormancy was overcome through after-ripening (AR) in dry barley seed storage of more than 4 weeks; alternatively, a 15-min ozone treatment could break the dormancy of barley immediately after harvest, with accelerated germination efficiency remaining around 96% until 4 weeks. Headspace solid-phase microextraction (HS-SPME) and liquid absorption coupled with gas chromatography mass spectrometry (GC-MS) were utilized for metabolite profiling of 2-, 4- and 7-day germinating seeds. Metabolic changes during barley germination are reflected by time-dependent characteristics. Alcohols, fatty acids, and ketones were major contributors to time-driven changes during germination. In addition, greater fatty acids were released at the early germination stage when subjected to ozone treatment.
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Affiliation(s)
- Xue Dong
- College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, Perth 6150, Australia; (X.D.); (L.S.); (M.A.); (G.M.); (Y.H.)
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China
| | - Litao Sun
- College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, Perth 6150, Australia; (X.D.); (L.S.); (M.A.); (G.M.); (Y.H.)
| | - Manjree Agarwal
- College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, Perth 6150, Australia; (X.D.); (L.S.); (M.A.); (G.M.); (Y.H.)
| | - Garth Maker
- College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, Perth 6150, Australia; (X.D.); (L.S.); (M.A.); (G.M.); (Y.H.)
| | - Yitao Han
- College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, Perth 6150, Australia; (X.D.); (L.S.); (M.A.); (G.M.); (Y.H.)
| | - Xiangyang Yu
- Institute of Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, Nanjing 210014, China
- Correspondence: (X.Y.); (Y.R.); Tel.: +86-25-8439-1299 (X.Y.); +618-9360-1397 (Y.R.)
| | - Yonglin Ren
- College of Science, Health, Engineering and Education, Murdoch University, 90 South Street, Murdoch, Perth 6150, Australia; (X.D.); (L.S.); (M.A.); (G.M.); (Y.H.)
- Correspondence: (X.Y.); (Y.R.); Tel.: +86-25-8439-1299 (X.Y.); +618-9360-1397 (Y.R.)
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Li W, Niu Y, Zheng Y, Wang Z. Advances in the Understanding of Reactive Oxygen Species-Dependent Regulation on Seed Dormancy, Germination, and Deterioration in Crops. FRONTIERS IN PLANT SCIENCE 2022; 13:826809. [PMID: 35283906 PMCID: PMC8905223 DOI: 10.3389/fpls.2022.826809] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Accepted: 01/25/2022] [Indexed: 05/31/2023]
Abstract
Reactive oxygen species (ROS) play an essential role in the regulation of seed dormancy, germination, and deterioration in plants. The low level of ROS as signaling particles promotes dormancy release and triggers seed germination. Excessive ROS accumulation causes seed deterioration during seed storage. Maintaining ROS homeostasis plays a central role in the regulation of seed dormancy, germination, and deterioration in crops. This study highlights the current advances in the regulation of ROS homeostasis in dry and hydrated seeds of crops. The research progress in the crosstalk between ROS and hormones involved in the regulation of seed dormancy and germination in crops is mainly summarized. The current understandings of ROS-induced seed deterioration are reviewed. These understandings of ROS-dependent regulation on seed dormancy, germination, and deterioration contribute to the improvement of seed quality of crops in the future.
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Affiliation(s)
- Wenjun Li
- The Laboratory of Seed Science and Technology, Guangdong Key Laboratory of Plant Molecular Breeding, Guangdong Laboratory of Lingnan Modern Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
| | - Yongzhi Niu
- Yuxi Zhongyan Tobacco Seed Co., Ltd., Yuxi, China
| | - Yunye Zheng
- Yuxi Zhongyan Tobacco Seed Co., Ltd., Yuxi, China
| | - Zhoufei Wang
- The Laboratory of Seed Science and Technology, Guangdong Key Laboratory of Plant Molecular Breeding, Guangdong Laboratory of Lingnan Modern Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou, China
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9
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Matilla AJ. Exploring Breakthroughs in Three Traits Belonging to Seed Life. PLANTS (BASEL, SWITZERLAND) 2022; 11:plants11040490. [PMID: 35214823 PMCID: PMC8875957 DOI: 10.3390/plants11040490] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Revised: 02/02/2022] [Accepted: 02/09/2022] [Indexed: 05/06/2023]
Abstract
Based on prior knowledge and with the support of new methodology, solid progress in the understanding of seed life has taken place over the few last years. This update reflects recent advances in three key traits of seed life (i.e., preharvest sprouting, genomic imprinting, and stored-mRNA). The first breakthrough refers to cloning of the mitogen-activated protein kinase-kinase 3 (MKK3) gene in barley and wheat. MKK3, in cooperation with ABA signaling, controls seed dormancy. This advance has been determinant in producing improved varieties that are resistant to preharvest sprouting. The second advance concerns to uniparental gene expression (i.e., imprinting). Genomic imprinting primarily occurs in the endosperm. Although great advances have taken place in the last decade, there is still a long way to go to complete the puzzle regarding the role of genomic imprinting in seed development. This trait is probably one of the most important epigenetic facets of developing endosperm. An example of imprinting regulation is polycomb repressive complex 2 (PRC2). The mechanism of PRC2 recruitment to target endosperm with specific genes is, at present, robustly studied. Further progress in the knowledge of recruitment of PRC2 epigenetic machinery is considered in this review. The third breakthrough referred to in this update involves stored mRNA. The role of the population of this mRNA in germination is far from known. Its relations to seed aging, processing bodies (P bodies), and RNA binding proteins (RBPs), and how the stored mRNA is targeted to monosomes, are aspects considered here. Perhaps this third trait is the one that will require greater experimental dedication in the future. In order to make progress, herein are included some questions that are needed to be answered.
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Affiliation(s)
- Angel J Matilla
- Departamento de Biología Funcional (Área Fisiología Vegetal), Facultad de Farmacia, Universidad de Santiago de Compostela, 15782 Santiago de Compostela, Spain
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Shi J, Shi J, Liang W, Zhang D. Integrating GWAS and transcriptomics to identify genes involved in seed dormancy in rice. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2021; 134:3553-3562. [PMID: 34312681 DOI: 10.1007/s00122-021-03911-1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2021] [Accepted: 07/07/2021] [Indexed: 06/13/2023]
Abstract
Several QTLs and genes responsible for seed dormancy were detected and SNP candidates were shown to cause changes in seed germination. Seed dormancy is a key agricultural trait to prevent pre-harvest sprouting in crop plants such as rice (Oryza sativa L.), wheat (Triticum aestivum), and barley (Hordeum vulgare L.). However, our knowledge of seed dormancy is hampered by the complexities of studying a trait that changes over time after seed harvest, and is complicated by interactions between phytohormones, seed coat components and the environment. Here, we have conducted a genome-wide association study using a panel of 311 natural accessions of cultivated rice, examining a total of 519,158 single nucleotide polymorphisms (SNPs). Eight quantitative trait loci (QTLs) were found to associate with seed dormancy in the whole panel and five in the Japonica and Indica subpanel; expression of candidate genes within 100 kb of each QTL was examined in two published, germination-specific transcriptomic datasets. Ten candidate genes, differentially expressed within the first four days post-imbibition, were identified. Five of these genes had previously been associated with awn length, heading date, yield, and spikelet length phenotypes. Two candidates were validated using Quantitative Reverse Transcription (qRT)-PCR. In addition, previously identified genes involved in hormone signaling during germination were found to be differentially expressed between a japonica and an indica line; SNPs in the promoter of Os9BGlu33 were associated with germination index, with qRT-PCR validation. Collectively, our results are useful for future characterization of seed dormancy mechanism and crop improvement, and suggest haplotypes for further analysis that may be of use to boost PHS resistance in rice.
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Affiliation(s)
- Jin Shi
- Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Jianxin Shi
- Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Wanqi Liang
- Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China
| | - Dabing Zhang
- Joint International Research Laboratory of Metabolic and Developmental Sciences, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China.
- School of Agriculture, Food, and Wine, University of Adelaide, Adelaide, South Australia, 5064, Australia.
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Née G, Châtel-Innocenti G, Meimoun P, Leymarie J, Montrichard F, Satour P, Bailly C, Issakidis-Bourguet E. A New Role for Plastid Thioredoxins in Seed Physiology in Relation to Hormone Regulation. Int J Mol Sci 2021; 22:ijms221910395. [PMID: 34638735 PMCID: PMC8508614 DOI: 10.3390/ijms221910395] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Revised: 09/19/2021] [Accepted: 09/22/2021] [Indexed: 01/16/2023] Open
Abstract
In Arabidopsis seeds, ROS have been shown to be enabling actors of cellular signaling pathways promoting germination, but their accumulation under stress conditions or during aging leads to a decrease in the ability to germinate. Previous biochemical work revealed that a specific class of plastid thioredoxins (Trxs), the y-type Trxs, can fulfill antioxidant functions. Among the ten plastidial Trx isoforms identified in Arabidopsis, Trx y1 mRNA is the most abundant in dry seeds. We hypothesized that Trx y1 and Trx y2 would play an important role in seed physiology as antioxidants. Using reverse genetics, we found important changes in the corresponding Arabidopsis mutant seeds. They display remarkable traits such as increased longevity and higher and faster germination in conditions of reduced water availability or oxidative stress. These phenotypes suggest that Trxs y do not play an antioxidant role in seeds, as further evidenced by no changes in global ROS contents and protein redox status found in the corresponding mutant seeds. Instead, we provide evidence that marker genes of ABA and GAs pathways are perturbed in mutant seeds, together with their sensitivity to specific hormone inhibitors. Altogether, our results suggest that Trxs y function in Arabidopsis seeds is not linked to their previously identified antioxidant roles and reveal a new role for plastid Trxs linked to hormone regulation.
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Affiliation(s)
- Guillaume Née
- CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), Université Evry, Université Paris-Saclay, F-91405 Orsay, France
| | - Gilles Châtel-Innocenti
- CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), Université Evry, Université Paris-Saclay, F-91405 Orsay, France
| | - Patrice Meimoun
- CNRS, Laboratoire de Biologie du Développement, Sorbonne Université, F-75005 Paris, France
| | - Juliette Leymarie
- CNRS, Laboratoire de Biologie du Développement, Sorbonne Université, F-75005 Paris, France
| | - Françoise Montrichard
- IRHS-UMR1345, INRAE, Institut Agro, SFR 4207 QuaSaV, Université d'Angers, F-49071 Beaucouzé, France
| | - Pascale Satour
- IRHS-UMR1345, INRAE, Institut Agro, SFR 4207 QuaSaV, Université d'Angers, F-49071 Beaucouzé, France
| | - Christophe Bailly
- CNRS, Laboratoire de Biologie du Développement, Sorbonne Université, F-75005 Paris, France
| | - Emmanuelle Issakidis-Bourguet
- CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), Université Evry, Université Paris-Saclay, F-91405 Orsay, France
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Malavert C, Batlla D, Benech-Arnold RL. The role of seed water content for the perception of temperature signals that drive dormancy changes in Polygonum aviculare buried seeds. FUNCTIONAL PLANT BIOLOGY : FPB 2020; 48:28-39. [PMID: 32723472 DOI: 10.1071/fp20011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 06/20/2020] [Indexed: 06/11/2023]
Abstract
Seedling emergence in the field is strongly related to the dynamics of dormancy release and induction of the seed bank, which is mainly regulated by soil temperature. However, there is limited information on how temperature-driven effects on dormancy changes are modulated by the seed hydration-level. We investigated the effect of seed water content (SWC) on the dormancy release and dormancy induction in Polygonum aviculare L. seeds. We characterised quantitatively the interaction between seed water content (SWC) and temperature through the measurement of changes in the lower limit temperature for seed germination (Tl) during dormancy changes for seeds with different SWC. These relationships were inserted in existing population-based threshold models and were run against field obtained data. The model considering SWC was able to predict P. aviculare field emergence patterns. However, failure to consider SWC led to overestimations in the emergence size and timing. Our results show that in humid temperate habitats, the occurrence of eventual water shortages during late-winter or spring (i.e. short periods of water content below 31% SWC) can affect soil temperature effects on seed dormancy, and might lead reductions in the emergence size rather than to significant temporal displacements in the emergence window. In conclusion, SWC plays an important role for the perception of temperature signals that drive dormancy changes in buried seeds.
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Affiliation(s)
- Cristian Malavert
- IFEVA, Universidad de Buenos Aires, CONICET, Facultad de Agronomía. Av. San Martín, 4453, Buenos Aires, Argentina; and Universidad de Buenos Aires, Facultad de Agronomía, Cátedra de Cultivos Industriales. Av. San Martín, 4453, Buenos Aires, Argentina; and Corresponding author.
| | - Diego Batlla
- IFEVA, Universidad de Buenos Aires, CONICET, Facultad de Agronomía. Av. San Martín, 4453, Buenos Aires, Argentina; and Universidad de Buenos Aires, Facultad de Agronomía, Cátedra de Cerealicultura. Av. San Martín, 4453, Buenos Aires, Argentina
| | - Roberto L Benech-Arnold
- IFEVA, Universidad de Buenos Aires, CONICET, Facultad de Agronomía. Av. San Martín, 4453, Buenos Aires, Argentina; and Universidad de Buenos Aires, Facultad de Agronomía, Cátedra de Cultivos Industriales. Av. San Martín, 4453, Buenos Aires, Argentina
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Pawłowski TA, Bujarska-Borkowska B, Suszka J, Tylkowski T, Chmielarz P, Klupczyńska EA, Staszak AM. Temperature Regulation of Primary and Secondary Seed Dormancy in Rosa canina L.: Findings from Proteomic Analysis. Int J Mol Sci 2020; 21:ijms21197008. [PMID: 32977616 PMCID: PMC7582745 DOI: 10.3390/ijms21197008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2020] [Revised: 09/16/2020] [Accepted: 09/22/2020] [Indexed: 12/20/2022] Open
Abstract
Temperature is a key environmental factor restricting seed germination. Rose (Rosa canina L.) seeds are characterized by physical/physiological dormancy, which is broken during warm, followed by cold stratification. Exposing pretreated seeds to 20 °C resulted in the induction of secondary dormancy. The aim of this study was to identify and functionally characterize the proteins associated with dormancy control of rose seeds. Proteins from primary dormant, after warm and cold stratification (nondormant), and secondary dormant seeds were analyzed using 2-D electrophoresis. Proteins that varied in abundance were identified by mass spectrometry. Results showed that cold stratifications affected the variability of the highest number of spots, and there were more common spots with secondary dormancy than with warm stratification. The increase of mitochondrial proteins and actin during dormancy breaking suggests changes in cell functioning and seed preparation to germination. Secondary dormant seeds were characterized by low levels of legumin, metabolic enzymes, and actin, suggesting the consumption of storage materials, a decrease in metabolic activity, and cell elongation. Breaking the dormancy of rose seeds increased the abundance of cellular and metabolic proteins that promote germination. Induction of secondary dormancy caused a decrease in these proteins and germination arrest.
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14
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The signalling role of ROS in the regulation of seed germination and dormancy. Biochem J 2020; 476:3019-3032. [PMID: 31657442 DOI: 10.1042/bcj20190159] [Citation(s) in RCA: 119] [Impact Index Per Article: 29.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Revised: 10/04/2019] [Accepted: 10/04/2019] [Indexed: 12/11/2022]
Abstract
Reactive oxygen species (ROS) are versatile compounds which can have toxic or signalling effects in a wide range living organisms, including seeds. They have been reported to play a pivotal role in the regulation of seed germination and dormancy but their mechanisms of action are still far from being fully understood. In this review, we sum-up the major findings that have been carried out this last decade in this field of research and which altogether shed a new light on the signalling roles of ROS in seed physiology. ROS participate in dormancy release during seed dry storage through the direct oxidation of a subset of biomolecules. During seed imbibition, the controlled generation of ROS is involved in the perception and transduction of environmental conditions that control germination. When these conditions are permissive for germination, ROS levels are maintained at a level which triggers cellular events associated with germination, such as hormone signalling. Here we propose that the spatiotemporal regulation of ROS production acts in concert with hormone signalling to regulate the cellular events involved in cell expansion associated with germination.
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15
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Karahara I, Suto T, Yamaguchi T, Yashiro U, Tamaoki D, Okamoto E, Yano S, Tanigaki F, Shimazu T, Kasahara H, Kasahara H, Yamada M, Hoson T, Soga K, Kamisaka S. Vegetative and reproductive growth of Arabidopsis under microgravity conditions in space. JOURNAL OF PLANT RESEARCH 2020; 133:571-585. [PMID: 32424466 DOI: 10.1007/s10265-020-01200-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2019] [Accepted: 04/24/2020] [Indexed: 06/11/2023]
Abstract
We have performed a seed-to-seed experiment in the cell biology experiment facility (CBEF) installed in the Kibo (Japanese Experiment Module) in the International Space Station. The CBEF has a 1 × g compartment on a centrifuge and a microgravity compartment, to investigate the effects of microgravity on the vegetative and reproductive growth of Arabidopsis thaliana (L.) Heynh. Seeds germinated irrespective of gravitational conditions after water supply on board. Thereafter, seedlings developed rosette leaves. The time of bolting was slightly earlier under microgravity than under space 1 × g. Microgravity enhanced the growth rate of peduncles as compared with space 1 × g or ground control. Plants developed flowers, siliques and seeds, completing their entire life cycle during 62-days cultivation. Although the flowering time was not significantly affected under microgravity, the number of flowers in a bolted plant significantly increased under microgravity as compared with space 1 × g or ground control. Microscopic analysis of reproductive organs revealed that the longitudinal length of anthers was significantly shorter under microgravity when compared with space 1 × g, while the length of pistils and filaments was not influenced by the gravitational conditions. Seed mass significantly increased under microgravity when compared with space 1 × g. In addition, seeds produced in space were found not to germinate on the ground. These results indicate that microgravity significantly influenced the reproductive development of Arabidopsis plants even though Earth's gravitational environment is not absolutely necessary for them to complete their life cycle.
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Affiliation(s)
- Ichirou Karahara
- Department of Biology, Faculty of Science, University of Toyama, Gofuku, Toyama, 930-8555, Japan.
| | - Takamichi Suto
- Department of Biology, Faculty of Science, University of Toyama, Gofuku, Toyama, 930-8555, Japan
| | - Takashi Yamaguchi
- Department of Biology, Faculty of Science, University of Toyama, Gofuku, Toyama, 930-8555, Japan
| | - Umi Yashiro
- Department of Biology, Faculty of Science, University of Toyama, Gofuku, Toyama, 930-8555, Japan
| | - Daisuke Tamaoki
- Department of Biology, Faculty of Science, University of Toyama, Gofuku, Toyama, 930-8555, Japan
| | - Emi Okamoto
- Department of Biology, Faculty of Science, University of Toyama, Gofuku, Toyama, 930-8555, Japan
| | - Sachiko Yano
- Japan Aerospace Exploration Agency, Tokyo, Japan
| | | | | | - Haruo Kasahara
- Japan Aerospace Exploration Agency, Tokyo, Japan
- Japan Manned Space System Ltd, Tokyo, Japan
| | | | - Mitsuhiro Yamada
- School of Biological Sciences, Tokai University, Hokkaido, Japan
| | - Takayuki Hoson
- Department of Biology, Graduate School of Science, Osaka City University, Osaka, Japan
| | - Kouichi Soga
- Department of Biology, Graduate School of Science, Osaka City University, Osaka, Japan
| | - Seiichiro Kamisaka
- Department of Biology, Faculty of Science, University of Toyama, Gofuku, Toyama, 930-8555, Japan
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16
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Carrera-Castaño G, Calleja-Cabrera J, Pernas M, Gómez L, Oñate-Sánchez L. An Updated Overview on the Regulation of Seed Germination. PLANTS 2020; 9:plants9060703. [PMID: 32492790 PMCID: PMC7356954 DOI: 10.3390/plants9060703] [Citation(s) in RCA: 62] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 05/22/2020] [Accepted: 05/26/2020] [Indexed: 02/07/2023]
Abstract
The ability of a seed to germinate and establish a plant at the right time of year is of vital importance from an ecological and economical point of view. Due to the fragility of these early growth stages, their swiftness and robustness will impact later developmental stages and crop yield. These traits are modulated by a continuous interaction between the genetic makeup of the plant and the environment from seed production to germination stages. In this review, we have summarized the established knowledge on the control of seed germination from a molecular and a genetic perspective. This serves as a “backbone” to integrate the latest developments in the field. These include the link of germination to events occurring in the mother plant influenced by the environment, the impact of changes in the chromatin landscape, the discovery of new players and new insights related to well-known master regulators. Finally, results from recent studies on hormone transport, signaling, and biophysical and mechanical tissue properties are underscoring the relevance of tissue-specific regulation and the interplay of signals in this crucial developmental process.
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17
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Ciou HS, Tsai YL, Chiu CC. Arabidopsis chloroplast J protein DJC75/CRRJ mediates nitrate-promoted seed germination in the dark. ANNALS OF BOTANY 2020; 125:1091-1099. [PMID: 32157271 PMCID: PMC7262469 DOI: 10.1093/aob/mcaa040] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Accepted: 03/06/2020] [Indexed: 06/10/2023]
Abstract
BACKGROUND AND AIMS Nitrate can stimulate seed germination of many plant species in the absence of light; however, the molecular mechanism of nitrate-promoted seed germination in the dark remains largely unclear and no component of this pathway has been identified yet. Here, we show that a plastid J-domain protein, DJC75/CRRJ, in arabidopsis (Arabidopsis thaliana) is important for nitrate-promoted seed germination in the dark. METHODS The expression of DJC75 during imbibition in the dark was investigated. The seed germination rate of mutants defective in DJC75 was determined in the presence of nitrate when light cues for seed germination were eliminated by the treatment of imbibed seeds with a pulse of far-red light to inactivate phytochrome B (phyB), or by assaying germination in the dark with seeds harbouring the phyB mutation. The germination rates of mutants defective in CRRL, a J-like protein related to DJC75, and in two chloroplast Hsp70s were also measured in the presence of nitrate in darkness. KEY RESULTS DJC75 was expressed during seed imbibition in the absence of light. Mutants defective in DJC75 showed seed germination defects in the presence of nitrate when light cues for seed germination were eliminated. Mutants defective in CRRL and in two chloroplast Hsp70s also exhibited similar seed germination defects. Upregulation of gibberellin biosynthetic gene GA3ox1 expression by nitrate in imbibed phyB mutant seeds was diminished when DJC75 was knocked out. CONCLUSIONS Our data suggest that plastid J-domain protein DJC75 regulates nitrate-promoted seed germination in the dark by upregulation of expression of the gibberellin biosynthetic gene GA3ox1 through an unknown mechanism and that DJC75 may work in concert with chloroplast Hsp70s to regulate nitrate-promoted seed germination. DJC75 is the first pathway component identified for nitrate-promoted seed germination in the dark.
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Affiliation(s)
- Huai-Syuan Ciou
- Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, Tainan, Taiwan
| | - Yu-Lun Tsai
- Institute of Molecular Biology, Academia Sinica, Taipei, Taiwan
- Institute of Molecular and Cellular Biology, National Taiwan University, Taipei, Taiwan
| | - Chi-Chou Chiu
- Institute of Tropical Plant Sciences and Microbiology, National Cheng Kung University, Tainan, Taiwan
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18
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Cheon KS, Won YJ, Jeong YM, Lee YY, Kang DY, Oh J, Oh H, Kim SL, Kim N, Lee E, Yoon IS, Choi I, Baek J, Kim KH, Park HS, Ji H. QTL mapping for pre-harvest sprouting resistance in japonica rice varieties utilizing genome re-sequencing. Mol Genet Genomics 2020; 295:1129-1140. [PMID: 32458040 PMCID: PMC7391406 DOI: 10.1007/s00438-020-01688-4] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Accepted: 05/11/2020] [Indexed: 11/29/2022]
Abstract
Pre-harvest sprouting (PHS) leads to serious economic losses because of reductions in yield and quality. To analyze the quantitative trait loci (QTLs) for PHS resistance in japonica rice, PHS rates on panicles were measured in 160 recombinant inbred lines (RILs) derived from a cross between the temperate japonica varieties Odae (PHS resistant) and Unbong40 (PHS susceptible) under two different environmental conditions—field (summer) and greenhouse (winter) environments. Genome re-sequencing of the parental varieties detected 266,773 DNA polymorphisms including 248,255 single nucleotide polymorphisms and 18,518 insertions/deletions. We constructed a genetic map comprising 239 kompetitive allele-specific PCR and 49 cleaved amplified polymorphic sequence markers. In the field environment, two major QTLs, qPHS-3FD and qPHS-11FD, were identified on chromosomes 3 and 11, respectively, whereas three major QTLs, qPHS-3GH, qPHS-4GH, and qPHS-11GH, were identified on chromosomes 3, 4, and 11, respectively, in the greenhouse environment. qPHS-11GH and qPHS-11FD had similar locations on chromosome 11, suggesting the existence of a gene conferring stable PHS resistance effects under different environmental conditions. The QTLs identified in this study can be used to improve the PHS resistance of japonica varieties, and they may improve our understanding of the genetic basis of PHS resistance.
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Affiliation(s)
- Kyeong-Seong Cheon
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - Yong Jae Won
- Cheorwon Branch, National Institute of Crop Science, Rural Development Administration (RDA), Cheorwon, 24010, South Korea
| | - Young-Min Jeong
- Seed Industry Promotion Center, Foundation of Agri. Tech. Commercialization & Transfer (FACT), Gimje, 54324, South Korea
| | - Youn-Young Lee
- Seed Industry Promotion Center, Foundation of Agri. Tech. Commercialization & Transfer (FACT), Gimje, 54324, South Korea
| | - Do-Yu Kang
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - Jun Oh
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - Hyoja Oh
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - Song Lim Kim
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - Nyunhee Kim
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - Eungyeong Lee
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - In Sun Yoon
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - Inchan Choi
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - Jeongho Baek
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - Kyung-Hwan Kim
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea
| | - Hyun-Su Park
- Crop Breeding Division, National Institute of Crop Science, Rural Development Administration (RDA), Wanju, 55365, South Korea
| | - Hyeonso Ji
- Department of Agricultural Biotechnology, National Institute of Agricultural Sciences, Rural Development Administration (RDA), Jeonju, 54874, South Korea.
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19
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Baskin CC, Baskin JM. Breaking Seed Dormancy during Dry Storage: A Useful Tool or Major Problem for Successful Restoration via Direct Seeding? PLANTS (BASEL, SWITZERLAND) 2020; 9:E636. [PMID: 32429336 PMCID: PMC7284515 DOI: 10.3390/plants9050636] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 05/07/2020] [Accepted: 05/09/2020] [Indexed: 11/25/2022]
Abstract
To facilitate the restoration of disturbed vegetation, seeds of wild species are collected and held in dry storage, but often there is a shortage of seeds for this purpose. Thus, much research effort is expended to maximize the use of the available seeds and to ensure that they are nondormant when sown. Sowing nondormant (versus dormant) seeds in the field should increase the success of the restoration. Of the various treatments available to break seed dormancy, afterripening, that is, dormancy break during dry storage, is the most cost-effective. Seeds that can undergo afterripening have nondeep physiological dormancy, and this includes members of common families such as Asteraceae and Poaceae. In this review, we consider differences between species in terms of seed moisture content, temperature and time required for afterripening and discuss the conditions in which afterripening is rapid but could lead to seed aging and death if storage is too long. Attention is given to the induction of secondary dormancy in seeds that have become nondormant via afterripening and to the biochemical and molecular changes occurring in seeds during dry storage. Some recommendations are made for managing afterripening so that seeds are nondormant at the time for sowing. The most important recommendation probably is that germination responses of the seeds need to be monitored for germinability/viability during the storage period.
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Affiliation(s)
- Carol C. Baskin
- Department of Biology, University of Kentucky, Lexington, KY 40506-0225, USA
- Department of Plant and Soil Science, University of Kentucky, Lexington, KY 40546-0321, USA;
| | - Jerry M. Baskin
- Department of Biology, University of Kentucky, Lexington, KY 40506-0225, USA
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20
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Buijs G, Vogelzang A, Nijveen H, Bentsink L. Dormancy cycling: translation-related transcripts are the main difference between dormant and non-dormant seeds in the field. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 102:327-339. [PMID: 31785171 PMCID: PMC7217185 DOI: 10.1111/tpj.14626] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2019] [Revised: 11/08/2019] [Accepted: 11/13/2019] [Indexed: 05/20/2023]
Abstract
Primary seed dormancy is a mechanism that orchestrates the timing of seed germination in order to prevent out-of-season germination. Secondary dormancy can be induced in imbibed seeds when they encounter prolonged unfavourable conditions. Secondary dormancy is not induced during dry storage, and therefore the mechanisms underlying this process have remained largely unexplored. Here, a 2-year seed burial experiment in which dormancy cycling was studied at the physiological and transcriptional level is presented. For these analyses six different Arabidopsis thaliana genotypes were used: Landsberg erecta (Ler) and the dormancy associated DELAY OF GERMINATION (DOG) near-isogenic lines 1, 2, 3, 6 and 22 (NILDOG1, 2, 3, 6 and 22). The germination potential of seeds exhumed from the field showed that these seeds go through dormancy cycling and that the dynamics of this cycling is genotype dependent. RNA-seq analysis revealed large transcriptional changes during dormancy cycling, especially at the time points preceding shifts in dormancy status. Dormancy cycling is driven by soil temperature and the endosperm is important in the perception of the environment. Genes that are upregulated in the low- to non-dormant stages are enriched for genes involved in translation, indicating that the non-dormant seeds are prepared for rapid seed germination.
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Affiliation(s)
- Gonda Buijs
- Wageningen Seed LaboratoryLaboratory of Plant PhysiologyWageningen UniversityWageningenthe Netherlands
| | - Afke Vogelzang
- Wageningen Seed LaboratoryLaboratory of Plant PhysiologyWageningen UniversityWageningenthe Netherlands
| | - Harm Nijveen
- Bioinformatics GroupWageningen UniversityWageningenthe Netherlands
| | - Leónie Bentsink
- Wageningen Seed LaboratoryLaboratory of Plant PhysiologyWageningen UniversityWageningenthe Netherlands
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21
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Wang Z, Zhao Y, Zhang Y, Zhao B, Yang Z, Dong L. The role of seed appendage in improving the adaptation of a species in definite seasons: a case study of Atriplex centralasiatica. BMC PLANT BIOLOGY 2019; 19:538. [PMID: 31801470 PMCID: PMC6894244 DOI: 10.1186/s12870-019-2090-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2019] [Accepted: 10/21/2019] [Indexed: 05/29/2023]
Abstract
BACKGROUND As a common accompanying dispersal structure, specialized seed appendages play a critical role in the successful germination and dispersal of many plants, and are regarded as an adaptation character for plants survival in diverse environments. However, little is known about how the appendages modulate the linkage between germination and environmental factors. Here, we tested the responses of germination to seasonal environmental signals (temperature and humidity) via seed appendages using Atriplex centralasiatica, which is widely distributed in salt marshlands with dry-cold winter in northern China. Three types of heteromorphic diaspores that differ in morphology of persistent bracteole and dormancy levels are produced in an individual plant of A. centralasiatica. RESULTS Except for the nondormant diaspore (type A, with a brown seed enclosed in a persistent bracteole), bracteoles regulated inner seed dormancy of the other two dormant diaspore types, i.e., type B (flat diaspore with a black inner seed) and type C (globular diaspore with a black inner seed). For types B and C, germination of bracteole-free seeds was higher than that of intact diaspores, and was limited severely when incubated in the bracteole-soaking solution. Dormancy was released at a low temperature (< 10 °C) and suitable humidity (5-15%) condition. Oppositely, high temperature and unfit humidity induced secondary dormancy via inhibitors released by bracteoles. Type C with deeper dormancy needed more stringent conditions for dormancy release and was easier for dormancy inducement than type B. The germination windows were broadened and the time needed for dormancy release decreased after the bracteole flushing for the two dormant types in the field condition. CONCLUSIONS Bracteoles determine the germination adaptation by bridging seeds and environmental signals and promising seedlings establishment only in proper seasons, which may also restrict species geographical distribution and shift species distributing ranges under the global climate change scenarios.
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Affiliation(s)
- Zhaoren Wang
- State Key Laboratory of Vegetation and Environmental Change, Institute of Botany, Chinese Academy of Sciences, Beijing, People’s Republic of China
- University of Chinese Academy of Sciences, Beijing, People’s Republic of China
| | - Yufei Zhao
- School of Life Sciences, Shaoxing University, Shaoxing, Zhejiang People’s Republic of China
| | - Yuanyuan Zhang
- College of life science, Shanxi Normal University, Linfen, Shanxi People’s Republic of China
| | - Baoshan Zhao
- School of Life Sciences, Shaoxing University, Shaoxing, Zhejiang People’s Republic of China
| | - Zhen’an Yang
- College of Life Science, China West Normal University, Nanchong, Sichuan, People’s Republic of China
| | - Lijia Dong
- School of Life Sciences, Shaoxing University, Shaoxing, Zhejiang People’s Republic of China
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22
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Wang LR, Yang XN, Gao YS, Zhang XY, Hu W, Zhou Z, Meng YL. Investigating seed dormancy in cotton (Gossypium hirsutum L.): understanding the physiological changes in embryo during after-ripening and germination. PLANT BIOLOGY (STUTTGART, GERMANY) 2019; 21:911-919. [PMID: 31077623 DOI: 10.1111/plb.13005] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2018] [Accepted: 05/07/2019] [Indexed: 05/06/2023]
Abstract
The dormancy of seeds of upland cotton can be broken during dry after-ripening, but the mechanism of its dormancy release remains unclear. Freshly harvested cotton seeds were subjected to after-ripening for 180 days. Cotton seeds from different days of after-ripening (DAR) were sampled for dynamic physiological determination and germination tests. The intact seeds and isolated embryos were germinated to assess effects of the seed coat on embryo germination. Content of H2 O2 and phytohormones and activities of antioxidant enzymes and glucose-6-phosphate dehydrogenase were measured during after-ripening and germination. Germination of intact seeds increased from 7% upon harvest to 96% at 30 DAR, while embryo germination improved from an initial rate of 82% to 100% after 14 DAR. Based on T50 (time when 50% of seeds germinate) and germination index, the intact seed and isolated embryo needed 30 and 21 DAR, respectively, to acquire relatively stable germination. The content of H2 O2 increased during after-ripening and continued to increase within the first few hours of imbibition, along with a decrease in abscisic acid (ABA) content. A noticeable increase was observed in gibberellic acid content during germination when ABA content decreased to a lower level. Coat removal treatment accelerated embryo absorption of water, which further improved the accumulation of H2 O2 and changed peroxidase content during germination. For cotton seed, the alleviation of coat-imposed dormancy required 30 days of after-ripening, accompanied by rapid dormancy release (within 21 DAR) in naked embryos. H2 O2 acted as a core link between the response to environmental changes and induction of other physiological changes for breaking seed dormancy.
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Affiliation(s)
- L R Wang
- Laboratory of Crop Physiology & Ecology, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, China
| | - X N Yang
- Laboratory of Crop Physiology & Ecology, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, China
| | - Y S Gao
- Laboratory of Crop Physiology & Ecology, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, China
| | - X Y Zhang
- Laboratory of Crop Physiology & Ecology, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, China
| | - W Hu
- Laboratory of Crop Physiology & Ecology, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, China
| | - Z Zhou
- Laboratory of Crop Physiology & Ecology, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, China
| | - Y L Meng
- Laboratory of Crop Physiology & Ecology, Ministry of Agriculture, Nanjing Agricultural University, Nanjing, China
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23
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Fiorucci AS, Bourbousse C, Concia L, Rougée M, Deton-Cabanillas AF, Zabulon G, Layat E, Latrasse D, Kim SK, Chaumont N, Lombard B, Stroebel D, Lemoine S, Mohammad A, Blugeon C, Loew D, Bailly C, Bowler C, Benhamed M, Barneche F. Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination. Genome Biol 2019; 20:100. [PMID: 31113491 PMCID: PMC6528313 DOI: 10.1186/s13059-019-1705-4] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2019] [Accepted: 05/02/2019] [Indexed: 12/19/2022] Open
Abstract
Background The functional determinants of H3K4me3, their potential dependency on histone H2B monoubiquitination, and their contribution to defining transcriptional regimes are poorly defined in plant systems. Unlike in Saccharomyces cerevisiae, where a single SET1 protein catalyzes H3K4me3 as part of COMPlex of proteins ASsociated with Set1 (COMPASS), in Arabidopsis thaliana, this activity involves multiple histone methyltransferases. Among these, the plant-specific SET DOMAIN GROUP 2 (SDG2) has a prominent role. Results We report that SDG2 co-regulates hundreds of genes with SWD2-like b (S2Lb), a plant ortholog of the Swd2 axillary subunit of yeast COMPASS. We show that S2Lb co-purifies with the AtCOMPASS core subunit WDR5, and both S2Lb and SDG2 directly influence H3K4me3 enrichment over highly transcribed genes. S2Lb knockout triggers pleiotropic developmental phenotypes at the vegetative and reproductive stages, including reduced fertility and seed dormancy. However, s2lb seedlings display little transcriptomic defects as compared to the large repertoire of genes targeted by S2Lb, SDG2, or H3K4me3, suggesting that H3K4me3 enrichment is important for optimal gene induction during cellular transitions rather than for determining on/off transcriptional status. Moreover, unlike in budding yeast, most of the S2Lb and H3K4me3 genomic distribution does not rely on a trans-histone crosstalk with histone H2B monoubiquitination. Conclusions Collectively, this study unveils that the evolutionarily conserved COMPASS-like complex has been co-opted by the plant-specific SDG2 histone methyltransferase and mediates H3K4me3 deposition through an H2B monoubiquitination-independent pathway in Arabidopsis. Electronic supplementary material The online version of this article (10.1186/s13059-019-1705-4) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Anne-Sophie Fiorucci
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, 75005, Paris, France.,Present address: Center for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, CH-1015, Lausanne, Switzerland
| | - Clara Bourbousse
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, 75005, Paris, France
| | - Lorenzo Concia
- Institute of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, CNRS, INRA, Université Paris-Sud, Université d'Evry, Université Paris-Diderot, Sorbonne Paris-Cité, 91405, Orsay, France
| | - Martin Rougée
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, 75005, Paris, France
| | - Anne-Flore Deton-Cabanillas
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, 75005, Paris, France
| | - Gérald Zabulon
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, 75005, Paris, France
| | - Elodie Layat
- Laboratoire de Biologie du Développement, Sorbonne Université, CNRS, 75005, Paris, France
| | - David Latrasse
- Institute of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, CNRS, INRA, Université Paris-Sud, Université d'Evry, Université Paris-Diderot, Sorbonne Paris-Cité, 91405, Orsay, France
| | - Soon Kap Kim
- Institute of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, CNRS, INRA, Université Paris-Sud, Université d'Evry, Université Paris-Diderot, Sorbonne Paris-Cité, 91405, Orsay, France
| | - Nicole Chaumont
- Laboratoire de Biologie du Développement, Sorbonne Université, CNRS, 75005, Paris, France
| | - Bérangère Lombard
- Centre de Recherche, Laboratoire de Spectrométrie de Masse Protéomique, Institut Curie, PSL Research University, 26 rue d'Ulm, 75248, Paris Cedex 05, France
| | - David Stroebel
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, 75005, Paris, France
| | - Sophie Lemoine
- Genomic Facility, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, Paris, 75005, France
| | - Ammara Mohammad
- Genomic Facility, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, Paris, 75005, France
| | - Corinne Blugeon
- Genomic Facility, Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, Paris, 75005, France
| | - Damarys Loew
- Centre de Recherche, Laboratoire de Spectrométrie de Masse Protéomique, Institut Curie, PSL Research University, 26 rue d'Ulm, 75248, Paris Cedex 05, France
| | - Christophe Bailly
- Laboratoire de Biologie du Développement, Sorbonne Université, CNRS, 75005, Paris, France
| | - Chris Bowler
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, 75005, Paris, France
| | - Moussa Benhamed
- Institute of Plant Sciences Paris-Saclay (IPS2), UMR 9213/UMR1403, CNRS, INRA, Université Paris-Sud, Université d'Evry, Université Paris-Diderot, Sorbonne Paris-Cité, 91405, Orsay, France
| | - Fredy Barneche
- Institut de Biologie de l'Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL University, 75005, Paris, France.
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24
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Puglia G, Carta A, Bizzoca R, Toorop P, Spampinato G, Raccuia SA. Seed dormancy and control of germination in Sisymbrella dentata (L.) O.E. Schulz (Brassicaceae). PLANT BIOLOGY (STUTTGART, GERMANY) 2018; 20:879-885. [PMID: 29905395 DOI: 10.1111/plb.12862] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2017] [Accepted: 06/11/2018] [Indexed: 06/08/2023]
Abstract
Seed germination responsiveness to environmental cues is crucial for plant species living in changeable habitats and can vary among populations within the same species as a result of adaptation or modulation to local climates. Here, we investigate the germination response to environmental cues of Sisymbrella dentata (L.) O.E. Schulz, an annual endemic to Sicily living in Mediterranean Temporary Ponds (MTP), a vulnerable ecosystem. Germination of the only two known populations, Gurrida and Pantano, was assessed over a broad range of conditions to understand the role of temperatures, nitrate, hormones (abscisic acid - ABA and gibberellins - GA) and after-ripening in dormancy release in this species. Seed germination responsiveness varied between the two populations, with seeds from Gurrida germinating under a narrower range of conditions. Overall, this process in S. dentata consisted of testa and endosperm rupture as two sequential events, influenced by ABA and GA biosynthesis. Nitrate addition caused an earlier testa rupture, after-ripening broadened the thermal conditions that allow germination, and alternating temperatures significantly promoted germination of non-after-ripened seeds. Primary dormancy in S. dentata seeds likely allows this plant to form a persistent seed bank that is responsive to specific environmental cues characteristic of MTP habitats.
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Affiliation(s)
- G Puglia
- Consiglio Nazionale delle Ricerche, Istituto per i Sistemi Agricoli e Forestali del Mediterraneo (CNR-ISAFOM) U.O.S. Catania, Catania, Italy
| | - A Carta
- Department of Biology, University of Pisa, Pisa, Italy
| | - R Bizzoca
- Department of Biological, Geological and Environmental Science, University of Catania, Catania, Italy
| | - P Toorop
- Comparative Plant and Fungal Biology Department, Royal Botanic Gardens, Richmond, UK
| | - G Spampinato
- Department of Agriculture, Mediterranean University of Reggio Calabria, Reggio Calabria, Italy
| | - S A Raccuia
- Consiglio Nazionale delle Ricerche, Istituto per i Sistemi Agricoli e Forestali del Mediterraneo (CNR-ISAFOM) U.O.S. Catania, Catania, Italy
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25
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Loubéry S, De Giorgi J, Utz-Pugin A, Demonsais L, Lopez-Molina L. A Maternally Deposited Endosperm Cuticle Contributes to the Physiological Defects of transparent testa Seeds. PLANT PHYSIOLOGY 2018; 177:1218-1233. [PMID: 29848749 PMCID: PMC6052993 DOI: 10.1104/pp.18.00416] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2018] [Accepted: 05/22/2018] [Indexed: 05/05/2023]
Abstract
Mature dry seeds are highly resilient plant structures where the encapsulated embryo is kept protected and dormant to facilitate its ultimate dispersion. Seed viability is heavily dependent on the seed coat's capacity to shield living tissues from mechanical and oxidative stress. In Arabidopsis (Arabidopsis thaliana), the seed coat, also called the testa, arises after the differentiation of maternal ovular integuments during seed development. We recently described a thick cuticle tightly embedded in the mature seed's endosperm cell wall. We show here that it is produced by the maternal inner integument 1 layer and, remarkably, transferred to the developing endosperm. Arabidopsis transparent testa (tt) mutations cause maternally derived seed coat pigmentation defects. TT gene products encode proteins involved in flavonoid metabolism and regulators of seed coat development. tt mutants have abnormally high seed coat permeability, resulting in lower seed viability and dormancy. However, the biochemical basis of this high permeability is not fully understood. We show that the cuticles of developing tt mutant integuments have profound structural defects, which are associated with enhanced cuticle permeability. Genetic analysis indicates that a functional proanthocyanidin synthesis pathway is required to limit cuticle permeability, and our results suggest that proanthocyanidins could be intrinsic components of the cuticle. Together, these results show that the formation of a maternal cuticle is an intrinsic part of the normal integumental differentiation program leading to testa formation and is essential for the seed's physiological properties.
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Affiliation(s)
- Sylvain Loubéry
- Department of Plant Biology and Institute for Genetics and Genomics in Geneva, University of Geneva, CH-1211 Geneva 4, Switzerland
| | - Julien De Giorgi
- Department of Plant Biology and Institute for Genetics and Genomics in Geneva, University of Geneva, CH-1211 Geneva 4, Switzerland
| | - Anne Utz-Pugin
- Department of Plant Biology and Institute for Genetics and Genomics in Geneva, University of Geneva, CH-1211 Geneva 4, Switzerland
| | - Lara Demonsais
- Department of Plant Biology and Institute for Genetics and Genomics in Geneva, University of Geneva, CH-1211 Geneva 4, Switzerland
| | - Luis Lopez-Molina
- Department of Plant Biology and Institute for Genetics and Genomics in Geneva, University of Geneva, CH-1211 Geneva 4, Switzerland
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26
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Nelson SK, Ariizumi T, Steber CM. Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. FRONTIERS IN PLANT SCIENCE 2017; 8:2158. [PMID: 29312402 PMCID: PMC5744475 DOI: 10.3389/fpls.2017.02158] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2017] [Accepted: 12/06/2017] [Indexed: 05/25/2023]
Abstract
Plant embryos can survive years in a desiccated, quiescent state within seeds. In many species, seeds are dormant and unable to germinate at maturity. They acquire the capacity to germinate through a period of dry storage called after-ripening (AR), a biological process that occurs at 5-15% moisture when most metabolic processes cease. Because stored transcripts are among the first proteins translated upon water uptake, they likely impact germination potential. Transcriptome changes associated with the increased seed dormancy of the GA-insensitive sly1-2 mutant, and with dormancy loss through long sly1-2 after-ripening (19 months) were characterized in dry seeds. The SLY1 gene was needed for proper down-regulation of translation-associated genes in mature dry seeds, and for AR up-regulation of these genes in germinating seeds. Thus, sly1-2 seed dormancy may result partly from failure to properly regulate protein translation, and partly from observed differences in transcription factor mRNA levels. Two positive regulators of seed dormancy, DELLA GAI (GA-INSENSITIVE) and the histone deacetylase HDA6/SIL1 (MODIFIERS OF SILENCING1) were strongly AR-down-regulated. These transcriptional changes appeared to be functionally relevant since loss of GAI function and application of a histone deacetylase inhibitor led to decreased sly1-2 seed dormancy. Thus, after-ripening may increase germination potential over time by reducing dormancy-promoting stored transcript levels. Differences in transcript accumulation with after-ripening correlated to differences in transcript stability, such that stable mRNAs appeared AR-up-regulated, and unstable transcripts AR-down-regulated. Thus, relative transcript levels may change with dry after-ripening partly as a consequence of differences in mRNA turnover.
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Affiliation(s)
- Sven K. Nelson
- Molecular Plant Sciences Program, Washington State University, Pullman, WA, United States
| | - Tohru Ariizumi
- Department of Crop and Soil Science, Washington State University, Pullman, WA, United States
| | - Camille M. Steber
- Molecular Plant Sciences Program, Washington State University, Pullman, WA, United States
- Department of Crop and Soil Science, Washington State University, Pullman, WA, United States
- Wheat Health, Genetics, and Quality Research Unit, United States Department of Agriculture–Agricultural Research Service, Pullman, WA, United States
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27
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Basbouss-Serhal I, Pateyron S, Cochet F, Leymarie J, Bailly C. 5' to 3' mRNA Decay Contributes to the Regulation of Arabidopsis Seed Germination by Dormancy. PLANT PHYSIOLOGY 2017; 173:1709-1723. [PMID: 28126845 PMCID: PMC5338662 DOI: 10.1104/pp.16.01933] [Citation(s) in RCA: 31] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/03/2017] [Accepted: 01/23/2017] [Indexed: 05/20/2023]
Abstract
The regulation of plant gene expression, necessary for development and adaptive responses, relies not only on RNA transcription but also on messenger RNA (mRNA) fate. To understand whether seed germination relies on the degradation of specific subsets of mRNA, we investigated whether the 5' to 3' RNA decay machinery participated in the regulation of this process. Arabidopsis (Arabidopsis thaliana) seeds of exoribonuclease4 (xrn4) and varicose (vcs) mutants displayed distinct dormancy phenotypes. Transcriptome analysis of xrn4-5 and vcs-8 mutant seeds allowed us to identify genes that are likely to play a role in the control of germination. Study of 5' untranslated region features of these transcripts revealed that specific motifs, secondary energy, and GC content could play a role in their degradation by XRN4 and VCS, and Gene Ontology clustering revealed novel actors of seed dormancy and germination. Several specific transcripts identified as being putative targets of XRN4 and VCS in seeds (PECTIN LYASE-LIKE, ASPARTYL PROTEASE, DWD-HYPERSENSITIVE-TO-ABA3, and YELLOW STRIPE-LIKE5) were further studied by reverse genetics, and their functional roles in the germination process were confirmed by mutant analysis. These findings suggest that completion of germination and its regulation by dormancy also depend on the degradation of specific subsets of mRNA.
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Affiliation(s)
- Isabelle Basbouss-Serhal
- Sorbonne Universités, UPMC Université Paris 06, Centre National de la Recherche Scientifique, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, Biologie du Développement, F-75005 Paris, France (I.B.-S., F.C., J.L., C.B.)
- Institute of Plant Sciences Paris Saclay IPS2, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Paris-Sud, Université Evry, Université Paris-Saclay, Bâtiment 630, 91405 Orsay, France (S.P.); and
- Institute of Plant Sciences Paris Saclay IPS2, Paris Diderot, Sorbonne Paris-Cité, Bâtiment 630, 91405 Orsay, France (S.P.)
| | - Stéphanie Pateyron
- Sorbonne Universités, UPMC Université Paris 06, Centre National de la Recherche Scientifique, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, Biologie du Développement, F-75005 Paris, France (I.B.-S., F.C., J.L., C.B.)
- Institute of Plant Sciences Paris Saclay IPS2, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Paris-Sud, Université Evry, Université Paris-Saclay, Bâtiment 630, 91405 Orsay, France (S.P.); and
- Institute of Plant Sciences Paris Saclay IPS2, Paris Diderot, Sorbonne Paris-Cité, Bâtiment 630, 91405 Orsay, France (S.P.)
| | - Françoise Cochet
- Sorbonne Universités, UPMC Université Paris 06, Centre National de la Recherche Scientifique, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, Biologie du Développement, F-75005 Paris, France (I.B.-S., F.C., J.L., C.B.)
- Institute of Plant Sciences Paris Saclay IPS2, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Paris-Sud, Université Evry, Université Paris-Saclay, Bâtiment 630, 91405 Orsay, France (S.P.); and
- Institute of Plant Sciences Paris Saclay IPS2, Paris Diderot, Sorbonne Paris-Cité, Bâtiment 630, 91405 Orsay, France (S.P.)
| | - Juliette Leymarie
- Sorbonne Universités, UPMC Université Paris 06, Centre National de la Recherche Scientifique, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, Biologie du Développement, F-75005 Paris, France (I.B.-S., F.C., J.L., C.B.)
- Institute of Plant Sciences Paris Saclay IPS2, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Paris-Sud, Université Evry, Université Paris-Saclay, Bâtiment 630, 91405 Orsay, France (S.P.); and
- Institute of Plant Sciences Paris Saclay IPS2, Paris Diderot, Sorbonne Paris-Cité, Bâtiment 630, 91405 Orsay, France (S.P.)
| | - Christophe Bailly
- Sorbonne Universités, UPMC Université Paris 06, Centre National de la Recherche Scientifique, Institut de Biologie Paris-Seine, Unité Mixte de Recherche 7622, Biologie du Développement, F-75005 Paris, France (I.B.-S., F.C., J.L., C.B.);
- Institute of Plant Sciences Paris Saclay IPS2, Centre National de la Recherche Scientifique, Institut National de la Recherche Agronomique, Université Paris-Sud, Université Evry, Université Paris-Saclay, Bâtiment 630, 91405 Orsay, France (S.P.); and
- Institute of Plant Sciences Paris Saclay IPS2, Paris Diderot, Sorbonne Paris-Cité, Bâtiment 630, 91405 Orsay, France (S.P.)
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28
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Chahtane H, Kim W, Lopez-Molina L. Primary seed dormancy: a temporally multilayered riddle waiting to be unlocked. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:857-869. [PMID: 27729475 DOI: 10.1093/jxb/erw377] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Primary seed dormancy is an important adaptive plant trait whereby seed germination is blocked under conditions that would otherwise be favorable for germination. This trait is found in newly produced mature seeds of many species, but not all. Once produced, dry seeds undergo an aging time period, called dry after-ripening, during which they lose primary dormancy and gradually acquire the capacity to germinate when exposed to favorable germination conditions. Primary seed dormancy has been extensively studied not only for its scientific interest but also for its ecological, phenological, and agricultural importance. Nevertheless, the mechanisms underlying primary seed dormancy and its regulation during after-ripening remain poorly understood. Here we review the principal developmental stages where primary dormancy is established and regulated prior to and during seed after-ripening, where it is progressively lost. We attempt to identify and summarize what is known about the molecular and genetic mechanisms intervening over time in each of these stages.
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Affiliation(s)
- Hicham Chahtane
- Department of Plant Biology and Institute for Genetics and Genomics in Geneva (iGE3), University of Geneva, Geneva, Switzerland
| | - Woohyun Kim
- Department of Plant Biology and Institute for Genetics and Genomics in Geneva (iGE3), University of Geneva, Geneva, Switzerland
| | - Luis Lopez-Molina
- Department of Plant Biology and Institute for Genetics and Genomics in Geneva (iGE3), University of Geneva, Geneva, Switzerland
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29
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Née G, Xiang Y, Soppe WJ. The release of dormancy, a wake-up call for seeds to germinate. CURRENT OPINION IN PLANT BIOLOGY 2017; 35:8-14. [PMID: 27710774 DOI: 10.1016/j.pbi.2016.09.002] [Citation(s) in RCA: 126] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Revised: 09/09/2016] [Accepted: 09/19/2016] [Indexed: 05/20/2023]
Abstract
Seed dormancy determines the timing of germination, thereby contributing to successful seedling establishment and plant fitness. The induction and release of dormancy are controlled by various regulators like plant hormones and dormancy proteins. The relative strengths of these regulators are influenced by environmental factors during seed maturation and storage. In the last few years additional processes have been identified to be involved in the release of dormancy during seed storage with an important role for non-enzymatic oxidative reactions. However, the relations between the different dormancy regulators are not fully understood yet. Finally, all accumulated information will be processed in the seed during early seed imbibition and lead to the decision to germinate or not.
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Affiliation(s)
- Guillaume Née
- Institute for Plant Biology and Biotechnology, University of Münster, Schlossplatz 7, 48149 Münster, Germany
| | - Yong Xiang
- Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, 518120 Shenzhen, China
| | - Wim Jj Soppe
- Department of Plant Breeding and Genetics, Max Planck Institute for Plant Breeding Research, 50829 Cologne, Germany; Institute of Molecular Physiology and Biotechnology of Plants (IMBIO), University of Bonn, 53115 Bonn, Germany.
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30
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Lu Q, Niu X, Zhang M, Wang C, Xu Q, Feng Y, Yang Y, Wang S, Yuan X, Yu H, Wang Y, Chen X, Liang X, Wei X. Genome-Wide Association Study of Seed Dormancy and the Genomic Consequences of Improvement Footprints in Rice ( Oryza sativa L.). FRONTIERS IN PLANT SCIENCE 2017; 8:2213. [PMID: 29354150 PMCID: PMC5760558 DOI: 10.3389/fpls.2017.02213] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Accepted: 12/18/2017] [Indexed: 05/03/2023]
Abstract
Seed dormancy is an important agronomic trait affecting grain yield and quality because of pre-harvest germination and is influenced by both environmental and genetic factors. However, our knowledge of the factors controlling seed dormancy remains limited. To better reveal the molecular mechanism underlying this trait, a genome-wide association study was conducted in an indica-only population consisting of 453 accessions genotyped using 5,291 SNPs. Nine known and new significant SNPs were identified on eight chromosomes. These lead SNPs explained 34.9% of the phenotypic variation, and four of them were designed as dCAPS markers in the hope of accelerating molecular breeding. Moreover, a total of 212 candidate genes was predicted and eight candidate genes showed plant tissue-specific expression in expression profile data from different public bioinformatics databases. In particular, LOC_Os03g10110, which had a maize homolog involved in embryo development, was identified as a candidate regulator for further biological function investigations. Additionally, a polymorphism information content ratio method was used to screen improvement footprints and 27 selective sweeps were identified, most of which harbored domestication-related genes. Further studies suggested that three significant SNPs were adjacent to the candidate selection signals, supporting the accuracy of our genome-wide association study (GWAS) results. These findings show that genome-wide screening for selective sweeps can be used to identify new improvement-related DNA regions, although the phenotypes are unknown. This study enhances our knowledge of the genetic variation in seed dormancy, and the new dormancy-associated SNPs will provide real benefits in molecular breeding.
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Affiliation(s)
- Qing Lu
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement and Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Guangzhou, China
| | - Xiaojun Niu
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Mengchen Zhang
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Caihong Wang
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Qun Xu
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Yue Feng
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Yaolong Yang
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Shan Wang
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Xiaoping Yuan
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Hanyong Yu
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Yiping Wang
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
| | - Xiaoping Chen
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement and Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Guangzhou, China
| | - Xuanqiang Liang
- Crops Research Institute, Guangdong Academy of Agricultural Sciences, South China Peanut Sub-Center of National Center of Oilseed Crops Improvement and Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Guangzhou, China
| | - Xinghua Wei
- State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou, China
- *Correspondence: Xinghua Wei
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31
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Oracz K, Karpiński S. Phytohormones Signaling Pathways and ROS Involvement in Seed Germination. FRONTIERS IN PLANT SCIENCE 2016; 7:864. [PMID: 27379144 PMCID: PMC4908112 DOI: 10.3389/fpls.2016.00864] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/27/2016] [Accepted: 06/01/2016] [Indexed: 05/06/2023]
Abstract
Phytohormones and reactive oxygen species (ROS) are major determinants of the regulation of development and stress responses in plants. During life cycle of these organisms, signaling networks of plant growth regulators and ROS interact in order to render an appropriate developmental and environmental response. In plant's photosynthetic (e.g., leaves) and non-photosynthetic (e.g., seeds) tissues, enhanced and suboptimal ROS production is usually associated with stress, which in extreme cases can be lethal to cells, a whole organ or even an organism. However, controlled production of ROS is appreciated for cellular signaling. Despite the current progress that has been made in plant biology and increasing number of findings that have revealed roles of ROS and hormonal signaling in germination, some questions still arise, e.g., what are the downstream protein targets modified by ROS enabling stimulus-specific cellular responses of the seed? Or which molecular regulators allow ROS/phytohormones interactions and what is their function in seed life? In this particular review the role of some transcription factors, kinases and phosphatases is discussed, especially those which usually known to be involved in ROS and hormonal signal transduction under stress in plants, may also play a role in the regulation of processes occurring in seeds. The summarized recent findings regarding particular ROS- and phytohormones-related regulatory proteins, as well as their integration, allowed to propose a novel, possible model of action of LESION SIMULATING DISEASE 1, ENHANCED DISEASE SUSCEPTIBILITY 1, and PHYTOALEXIN DEFICIENT 4 functioning during seeds life.
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Affiliation(s)
- Krystyna Oracz
- Department of Plant Physiology, Warsaw University of Life SciencesWarsaw, Poland
- *Correspondence: Krystyna Oracz, ; Stanisław Karpiński,
| | - Stanisław Karpiński
- Department of Plant Genetics, Breeding and Biotechnology, Warsaw University of Life SciencesWarsaw, Poland
- *Correspondence: Krystyna Oracz, ; Stanisław Karpiński,
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