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Ahmed S, Naqvi SMZA, Hussain F, Awais M, Ren Y, Wu J, Zhang H, Zang Y, Hu J. Quantifying Plant Signaling Pathways by Integrating Luminescence-Based Biosensors and Mathematical Modeling. BIOSENSORS 2024; 14:378. [PMID: 39194607 DOI: 10.3390/bios14080378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Revised: 07/30/2024] [Accepted: 08/01/2024] [Indexed: 08/29/2024]
Abstract
Plants have evolved intricate signaling pathways, which operate as networks governed by feedback to deal with stressors. Nevertheless, the sophisticated molecular mechanisms underlying these routes still need to be comprehended, and experimental validation poses significant challenges and expenses. Consequently, computational hypothesis evaluation gains prominence in understanding plant signaling dynamics. Biosensors are genetically modified to emit light when exposed to a particular hormone, such as abscisic acid (ABA), enabling quantification. We developed computational models to simulate the relationship between ABA concentrations and bioluminescent sensors utilizing the Hill equation and ordinary differential equations (ODEs), aiding better hypothesis development regarding plant signaling. Based on simulation results, the luminescence intensity was recorded for a concentration of 47.646 RLUs for 1.5 μmol, given the specified parameters and model assumptions. This method enhances our understanding of plant signaling pathways at the cellular level, offering significant benefits to the scientific community in a cost-effective manner. The alignment of these computational predictions with experimental results emphasizes the robustness of our approach, providing a cost-effective means to validate mathematical models empirically. The research intended to correlate the bioluminescence of biosensors with plant signaling and its mathematical models for quantified detection of specific plant hormone ABA.
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Affiliation(s)
- Shakeel Ahmed
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Syed Muhammad Zaigham Abbas Naqvi
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Fida Hussain
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Muhammad Awais
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Yongzhe Ren
- State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450002, China
| | - Junfeng Wu
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Hao Zhang
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Yiheng Zang
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
| | - Jiandong Hu
- College of Mechanical and Electrical Engineering, Henan Agricultural University, Zhengzhou 450002, China
- Henan International Joint Laboratory of Laser Technology in Agriculture Sciences, Zhengzhou 450002, China
- State Key Laboratory of Wheat and Maize Crop Science, Zhengzhou 450002, China
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Laplaud V, Muller E, Demidova N, Drevensek S, Boudaoud A. Assessing the hydromechanical control of plant growth. J R Soc Interface 2024; 21:20240008. [PMID: 38715319 PMCID: PMC11077010 DOI: 10.1098/rsif.2024.0008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 03/16/2024] [Accepted: 03/21/2024] [Indexed: 05/12/2024] Open
Abstract
Multicellular organisms grow and acquire their shapes through the differential expansion and deformation of their cells. Recent research has addressed the role of cell and tissue mechanical properties in these processes. In plants, it is believed that growth rate is a function of the mechanical stress exerted on the cell wall, the thin polymeric layer surrounding cells, involving an effective viscosity. Nevertheless, recent studies have questioned this view, suggesting that cell wall elasticity sets the growth rate or that uptake of water is limiting for plant growth. To assess these issues, we developed a microfluidic device to quantify the growth rates, elastic properties and hydraulic conductivity of individual Marchantia polymorpha plants in a controlled environment with a high throughput. We characterized the effect of osmotic treatment and abscisic acid on growth and hydromechanical properties. Overall, the instantaneous growth rate of individuals is correlated with both bulk elastic modulus and hydraulic conductivity. Our results are consistent with a framework in which the growth rate is determined primarily by the elasticity of the wall and its remodelling, and secondarily by hydraulic conductivity. Accordingly, the coupling between the chemistry of the cell wall and the hydromechanics of the cell appears as key to set growth patterns during morphogenesis.
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Affiliation(s)
- Valentin Laplaud
- LadHyX, CNRS, Ecole polytechnique, Institut Polytechnique de Paris, 91128 Palaiseau Cedex, France
| | - Elise Muller
- LadHyX, CNRS, Ecole polytechnique, Institut Polytechnique de Paris, 91128 Palaiseau Cedex, France
| | - Natalia Demidova
- LadHyX, CNRS, Ecole polytechnique, Institut Polytechnique de Paris, 91128 Palaiseau Cedex, France
- Department of Chemical and Physical Sciences, University of Toronto at Mississauga, Mississauga, Ontario, L5L1C6, Canada
| | - Stéphanie Drevensek
- LadHyX, CNRS, Ecole polytechnique, Institut Polytechnique de Paris, 91128 Palaiseau Cedex, France
| | - Arezki Boudaoud
- LadHyX, CNRS, Ecole polytechnique, Institut Polytechnique de Paris, 91128 Palaiseau Cedex, France
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3
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Smithers ET, Luo J, Dyson RJ. A continuum mechanics model of the plant cell wall reveals interplay between enzyme action and cell wall structure. THE EUROPEAN PHYSICAL JOURNAL. E, SOFT MATTER 2024; 47:1. [PMID: 38183519 PMCID: PMC10771620 DOI: 10.1140/epje/s10189-023-00396-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Accepted: 12/11/2023] [Indexed: 01/08/2024]
Abstract
Plant cell growth is regulated through manipulation of the cell wall network, which consists of oriented cellulose microfibrils embedded within a ground matrix incorporating pectin and hemicellulose components. There remain many unknowns as to how this manipulation occurs. Experiments have shown that cellulose reorients in cell walls as the cell expands, while recent data suggest that growth is controlled by distinct collections of hemicellulose called biomechanical hotspots, which join the cellulose molecule together. The enzymes expansin and Cel12A have both been shown to induce growth of the cell wall; however, while Cel12A's wall-loosening action leads to a reduction in the cell wall strength, expansin's has been shown to increase the strength of the cell wall. In contrast, members of the XTH enzyme family hydrolyse hemicellulose but do not appear to cause wall creep. This experimentally observed behaviour still awaits a full explanation. We derive and analyse a mathematical model for the effective mechanical properties of the evolving cell wall network, incorporating cellulose microfibrils, which reorient with cell growth and are linked via biomechanical hotspots made up of regions of crosslinking hemicellulose. Assuming a visco-elastic response for the cell wall and using a continuum approach, we calculate the total stress resultant of the cell wall for a given overall growth rate. By changing appropriate parameters affecting breakage rate and viscous properties, we provide evidence for the biomechanical hotspot hypothesis and develop mechanistic understanding of the growth-inducing enzymes.
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Affiliation(s)
- Euan T Smithers
- School of Mathematics, University of Birmingham, Birmingham, B15 2TT, UK.
- Sainsbury Laboratory, University of Cambridge, Bateman street, Cambridge, CB2 1LR, Cambridgeshire, UK.
| | - Jingxi Luo
- School of Mathematics, University of Birmingham, Birmingham, B15 2TT, UK
| | - Rosemary J Dyson
- School of Mathematics, University of Birmingham, Birmingham, B15 2TT, UK
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Wang M, Zheng S, Han J, Liu Y, Wang Y, Wang W, Tang X, Zhou C. Nyctinastic movement in legumes: Developmental mechanisms, factors and biological significance. PLANT, CELL & ENVIRONMENT 2023; 46:3206-3217. [PMID: 37614098 DOI: 10.1111/pce.14699] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2023] [Revised: 08/08/2023] [Accepted: 08/14/2023] [Indexed: 08/25/2023]
Abstract
In legumes, a common phenomenon known as nyctinastic movement is observed. This movement involves the horizontal expansion of leaves during the day and relative vertical closure at night. Nyctinastic movement is driven by the pulvinus, which consists of flexor and extensor motor cells. The turgor pressure difference between these two cell types generates a driving force for the bending and deformation of the pulvinus. This review focuses on the developmental mechanisms of the pulvinus, the factors affecting nyctinastic movement, and the biological significance of this phenomenon in legumes, thus providing a reference for further research on nyctinastic movement.
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Affiliation(s)
- Min Wang
- School of Life Science, The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao, China
| | - Shuze Zheng
- School of Life Science, The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao, China
| | - Jingyi Han
- School of Life Science, The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao, China
| | - Yuqi Liu
- School of Life Science, The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao, China
| | - Yun Wang
- School of Life Science, The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao, China
| | - Weilin Wang
- School of Life Science, The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao, China
| | - Ximi Tang
- School of Life Science, The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao, China
| | - Chuanen Zhou
- School of Life Science, The Key Laboratory of Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Science, Shandong University, Qingdao, China
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Tyagi A, Ali S, Park S, Bae H. Deciphering the role of mechanosensitive channels in plant root biology: perception, signaling, and adaptive responses. PLANTA 2023; 258:105. [PMID: 37878056 DOI: 10.1007/s00425-023-04261-6] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Accepted: 10/02/2023] [Indexed: 10/26/2023]
Abstract
MAIN CONCLUSION Mechanosensitive channels are integral membrane proteins that rapidly translate extrinsic or intrinsic mechanical tensions into biological responses. They can serve as potential candidates for developing smart-resilient crops with efficient root systems. Mechanosensitive (MS) calcium channels are molecular switches for mechanoperception and signal transduction in all living organisms. Although tremendous progress has been made in understanding mechanoperception and signal transduction in bacteria and animals, this remains largely unknown in plants. However, identification and validation of MS channels such as Mid1-complementing activity channels (MCAs), mechanosensitive-like channels (MSLs), and Piezo channels (PIEZO) has been the most significant discovery in plant mechanobiology, providing novel insights into plant mechanoperception. This review summarizes recent advances in root mechanobiology, focusing on MS channels and their related signaling players, such as calcium ions (Ca2+), reactive oxygen species (ROS), and phytohormones. Despite significant advances in understanding the role of Ca2+ signaling in root biology, little is known about the involvement of MS channel-driven Ca2+ and ROS signaling. Additionally, the hotspots connecting the upstream and downstream signaling of MS channels remain unclear. In light of this, we discuss the present knowledge of MS channels in root biology and their role in root developmental and adaptive traits. We also provide a model highlighting upstream (cell wall sensors) and downstream signaling players, viz., Ca2+, ROS, and hormones, connected with MS channels. Furthermore, we highlighted the importance of emerging signaling molecules, such as nitric oxide (NO), hydrogen sulfide (H2S), and neurotransmitters (NTs), and their association with root mechanoperception. Finally, we conclude with future directions and knowledge gaps that warrant further research to decipher the complexity of root mechanosensing.
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Affiliation(s)
- Anshika Tyagi
- Department of Biotechnology, Yeungnam University, Gyeongsan Gyeongbuk, 38541, Republic of Korea.
| | - Sajad Ali
- Department of Biotechnology, Yeungnam University, Gyeongsan Gyeongbuk, 38541, Republic of Korea
| | - Suvin Park
- Department of Biotechnology, Yeungnam University, Gyeongsan Gyeongbuk, 38541, Republic of Korea
| | - Hanhong Bae
- Department of Biotechnology, Yeungnam University, Gyeongsan Gyeongbuk, 38541, Republic of Korea.
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Murshed M, Wei D, Gu Y, Wang J. Simulation of microtubule-cytoplasm interaction revealed the importance of fluid dynamics in determining the organization of microtubules. PLANT DIRECT 2023; 7:e505. [PMID: 37502315 PMCID: PMC10368657 DOI: 10.1002/pld3.505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Revised: 03/24/2023] [Accepted: 05/30/2023] [Indexed: 07/29/2023]
Abstract
Although microtubules in plant cells have been extensively studied, the mechanisms that regulate the spatial organization of microtubules are poorly understood. We hypothesize that the interaction between microtubules and cytoplasmic flow plays an important role in the assembly and orientation of microtubules. To test this hypothesis, we developed a new computational modeling framework for microtubules based on theory and methods from the fluid-structure interaction. We employed the immersed boundary method to track the movement of microtubules in cytoplasmic flow. We also incorporated details of the encounter dynamics when two microtubules collide with each other. We verified our computational model through several numerical tests before applying it to the simulation of the microtubule-cytoplasm interaction in a growing plant cell. Our computational investigation demonstrated that microtubules are primarily oriented in the direction orthogonal to the axis of cell elongation. We validated the simulation results through a comparison with the measurement from laboratory experiments. We found that our computational model, with further calibration, was capable of generating microtubule orientation patterns that were qualitatively and quantitatively consistent with the experimental results. The computational model proposed in this study can be naturally extended to many other cellular systems that involve the interaction between microstructures and the intracellular fluid.
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Affiliation(s)
- Mohammad Murshed
- Department of MathematicsUniversity of Tennessee at ChattanoogaChattanoogaTennesseeUSA
| | - Donghui Wei
- Department of Biochemistry and Molecular BiologyPennsylvania State UniversityState CollegePennsylvaniaUSA
| | - Ying Gu
- Department of Biochemistry and Molecular BiologyPennsylvania State UniversityState CollegePennsylvaniaUSA
| | - Jin Wang
- Department of MathematicsUniversity of Tennessee at ChattanoogaChattanoogaTennesseeUSA
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7
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Takahara M, Tsugawa S, Sakamoto S, Demura T, Nakata MT. Pulvinar slits: Cellulose-deficient and de-methyl-esterified pectin-rich structures in a legume motor cell. PLANT PHYSIOLOGY 2023; 192:857-870. [PMID: 36849132 DOI: 10.1093/plphys/kiad105] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2022] [Revised: 01/24/2023] [Accepted: 01/26/2023] [Indexed: 06/01/2023]
Abstract
The cortical motor cells (CMCs) in a legume pulvinus execute the reversible deformation in leaf movement that is driven by changes in turgor pressure. In contrast to the underlying osmotic regulation property, the cell wall structure of CMCs that contributes to the movement has yet to be characterized in detail. Here, we report that the cell wall of CMCs has circumferential slits with low levels of cellulose deposition, which are widely conserved among legume species. This structure is unique and distinct from that of any other primary cell walls reported so far; thus, we named them "pulvinar slits." Notably, we predominantly detected de-methyl-esterified homogalacturonan inside pulvinar slits, with a low deposition of highly methyl-esterified homogalacturonan, as with cellulose. In addition, Fourier transform infrared spectroscopy analysis indicated that the cell wall composition of pulvini is different from that of other axial organs, such as petioles or stems. Moreover, monosaccharide analysis showed that pulvini are pectin-rich organs like developing stems and that the amount of galacturonic acid in pulvini is greater than in developing stems. Computer modeling suggested that pulvinar slits facilitate anisotropic extension in the direction perpendicular to the slits in the presence of turgor pressure. When tissue slices of CMCs were transferred to different extracellular osmotic conditions, pulvinar slits altered their opening width, indicating their deformability. In this study, we thus characterized a distinctive cell wall structure of CMCs, adding to our knowledge of repetitive and reversible organ deformation as well as the structural diversity and function of the plant cell wall.
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Affiliation(s)
| | - Satoru Tsugawa
- Graduate School of Science and Technology, Nara Institute of Science and Technology (NAIST), Ikoma, Nara 6300192, Japan
- Department of Mechanical Engineering, Faculty of Systems Science and Technology, Akita Prefectural University, Akita, Japan
| | - Shingo Sakamoto
- Plant Gene Regulation Research Group, Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
- Global Zero Emission Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
| | - Taku Demura
- Graduate School of Science and Technology, Nara Institute of Science and Technology (NAIST), Ikoma, Nara 6300192, Japan
- Center for Digital Green-innovation, Nara Institute of Science and Technology (NAIST), Ikoma, Nara 6300192, Japan
| | - Miyuki T Nakata
- Graduate School of Science and Technology, Nara Institute of Science and Technology (NAIST), Ikoma, Nara 6300192, Japan
- Center for Digital Green-innovation, Nara Institute of Science and Technology (NAIST), Ikoma, Nara 6300192, Japan
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8
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Mimault M, Ptashnyk M, Dupuy LX. Particle-based model shows complex rearrangement of tissue mechanical properties are needed for roots to grow in hard soil. PLoS Comput Biol 2023; 19:e1010916. [PMID: 36881572 PMCID: PMC10072375 DOI: 10.1371/journal.pcbi.1010916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Revised: 04/04/2023] [Accepted: 02/02/2023] [Indexed: 03/08/2023] Open
Abstract
When exposed to increased mechanical resistance from the soil, plant roots display non-linear growth responses that cannot be solely explained by mechanical principles. Here, we aim to investigate how changes in tissue mechanical properties are biologically regulated in response to soil strength. A particle-based model was developed to solve root-soil mechanical interactions at the cellular scale, and a detailed numerical study explored factors that affect root responses to soil resistance. Results showed how softening of root tissues at the tip may contribute to root responses to soil impedance, a mechanism likely linked to soil cavity expansion. The model also predicted the shortening and decreased anisotropy of the zone where growth occurs, which may improve the mechanical stability of the root against axial forces. The study demonstrates the potential of advanced modeling tools to help identify traits that confer plant resistance to abiotic stress.
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Affiliation(s)
- Matthias Mimault
- Information and Computational Science, The James Hutton Institute, Invergowrie, United Kingdom
- * E-mail: (MM); (MP); (LXD)
| | - Mariya Ptashnyk
- School of Mathematical and Computer Sciences, Maxwell Institute for Mathematical Sciences, Heriot-Watt University, Edinburgh, United Kingdom
- * E-mail: (MM); (MP); (LXD)
| | - Lionel X. Dupuy
- Neiker, Basque Institute for Agricultural Research and Development, Derio, Spain
- Ikerbasque, Basque Foundation for Science, Bilbao, Spain
- * E-mail: (MM); (MP); (LXD)
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9
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Cosgrove DJ. Building an extensible cell wall. PLANT PHYSIOLOGY 2022; 189:1246-1277. [PMID: 35460252 PMCID: PMC9237729 DOI: 10.1093/plphys/kiac184] [Citation(s) in RCA: 74] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2022] [Accepted: 03/21/2022] [Indexed: 05/15/2023]
Abstract
This article recounts, from my perspective of four decades in this field, evolving paradigms of primary cell wall structure and the mechanism of surface enlargement of growing cell walls. Updates of the structures, physical interactions, and roles of cellulose, xyloglucan, and pectins are presented. This leads to an example of how a conceptual depiction of wall structure can be translated into an explicit quantitative model based on molecular dynamics methods. Comparison of the model's mechanical behavior with experimental results provides insights into the molecular basis of complex mechanical behaviors of primary cell wall and uncovers the dominant role of cellulose-cellulose interactions in forming a strong yet extensible network.
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Affiliation(s)
- Daniel J Cosgrove
- Department of Biology, Penn State University, Pennsylvania 16802, USA
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10
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Miller K, Strychalski W, Nickaeen M, Carlsson A, Haswell ES. In vitro experiments and kinetic models of Arabidopsis pollen hydration mechanics show that MSL8 is not a simple tension-gated osmoregulator. Curr Biol 2022; 32:2921-2934.e3. [PMID: 35660140 DOI: 10.1016/j.cub.2022.05.033] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2021] [Revised: 04/12/2022] [Accepted: 05/12/2022] [Indexed: 10/18/2022]
Abstract
Pollen, a neighbor-less cell containing the male gametes, undergoes mechanical challenges during plant sexual reproduction, including desiccation and rehydration. It was previously shown that the pollen-specific mechanosensitive ion channel MscS-like (MSL)8 is essential for pollen survival during hydration and proposed that it functions as a tension-gated osmoregulator. Here, we test this hypothesis with a combination of mathematical modeling and laboratory experiments. Time-lapse imaging revealed that wild-type pollen grains swell, and then they stabilize in volume rapidly during hydration. msl8 mutant pollen grains, however, continue to expand and eventually burst. We found that a mathematical model, wherein MSL8 acts as a simple-tension-gated osmoregulator, does not replicate this behavior. A better fit was obtained from variations of the model, wherein MSL8 inactivates independent of its membrane tension gating threshold or MSL8 strengthens the cell wall without osmotic regulation. Experimental and computational testing of several perturbations, including hydration in an osmolyte-rich solution, hyper-desiccation of the grains, and MSL8-YFP overexpression, indicated that the cell wall strengthening model best simulated experimental responses. Finally, the expression of a nonconducting MSL8 variant did not complement the msl8 overexpansion phenotype. These data indicate that contrary to our hypothesis and to the current understanding of MS ion channel function in bacteria, MSL8 does not act as a simple membrane tension-gated osmoregulator. Instead, they support a model wherein ion flux through MSL8 is required to alter pollen cell wall properties. These results demonstrate the utility of pollen as a cellular scale model system and illustrate how mathematical models can correct intuitive hypotheses.
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Affiliation(s)
- Kari Miller
- Department of Biology, Washington University, St. Louis, MO 63130, USA; NSF Center for Engineering Mechanobiology, Cleveland, OH, USA
| | - Wanda Strychalski
- Department of Mathematics, Applied Mathematics, and Statistics, Case Western Reserve University, Cleveland, OH 44106, USA
| | - Masoud Nickaeen
- University of Connecticut School of Medicine, Farmington, CT 06030, USA
| | - Anders Carlsson
- NSF Center for Engineering Mechanobiology, Cleveland, OH, USA; Department of Physics, Washington University, St. Louis, MO 63130, USA
| | - Elizabeth S Haswell
- Department of Biology, Washington University, St. Louis, MO 63130, USA; NSF Center for Engineering Mechanobiology, Cleveland, OH, USA.
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11
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Multiscale Mechanical Performance of Wood: From Nano- to Macro-Scale across Structure Hierarchy and Size Effects. NANOMATERIALS 2022; 12:nano12071139. [PMID: 35407258 PMCID: PMC9000298 DOI: 10.3390/nano12071139] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Revised: 03/23/2022] [Accepted: 03/24/2022] [Indexed: 02/07/2023]
Abstract
This review describes methods and results of studying the mechanical properties of wood at all scales: from nano- to macro-scale. The connection between the mechanical properties of material and its structure at all these levels is explored. It is shown that the existing size effects in the mechanical properties of wood, in a range of the characteristic sizes of the structure of about six orders of magnitude, correspond to the empirical Hall-Petch relation. This “law” was revealed more than 60 years ago in metals and alloys and later in other materials. The nature, as well as the particular type of the size dependences in different classes of materials can vary, but the general trend, “the smaller the stronger”, remains true both for wood and for other cellulose-containing materials. The possible mechanisms of the size effects in wood are being discussed. The correlations between the mechanical and thermophysical properties of wood are described. Several examples are used to demonstrate the possibility to forecast the macromechanical properties of wood by means of contactless thermographic express methods based on measuring temperature diffusivity. The research technique for dendrochronological and dendroclimatological studies by means of the analysis of microhardness and Young’s modulus radial dependences in annual growth rings is described.
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12
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Hrmova M, Stratilová B, Stratilová E. Broad Specific Xyloglucan:Xyloglucosyl Transferases Are Formidable Players in the Re-Modelling of Plant Cell Wall Structures. Int J Mol Sci 2022; 23:ijms23031656. [PMID: 35163576 PMCID: PMC8836008 DOI: 10.3390/ijms23031656] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2022] [Revised: 01/25/2022] [Accepted: 01/26/2022] [Indexed: 01/27/2023] Open
Abstract
Plant xyloglucan:xyloglucosyl transferases, known as xyloglucan endo-transglycosylases (XETs) are the key players that underlie plant cell wall dynamics and mechanics. These fundamental roles are central for the assembly and modifications of cell walls during embryogenesis, vegetative and reproductive growth, and adaptations to living environments under biotic and abiotic (environmental) stresses. XET enzymes (EC 2.4.1.207) have the β-sandwich architecture and the β-jelly-roll topology, and are classified in the glycoside hydrolase family 16 based on their evolutionary history. XET enzymes catalyse transglycosylation reactions with xyloglucan (XG)-derived and other than XG-derived donors and acceptors, and this poly-specificity originates from the structural plasticity and evolutionary diversification that has evolved through expansion and duplication. In phyletic groups, XETs form the gene families that are differentially expressed in organs and tissues in time- and space-dependent manners, and in response to environmental conditions. Here, we examine higher plant XET enzymes and dissect how their exclusively carbohydrate-linked transglycosylation catalytic function inter-connects complex plant cell wall components. Further, we discuss progress in technologies that advance the knowledge of plant cell walls and how this knowledge defines the roles of XETs. We construe that the broad specificity of the plant XETs underscores their roles in continuous cell wall restructuring and re-modelling.
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Affiliation(s)
- Maria Hrmova
- Jiangsu Collaborative Innovation Centre for Regional Modern Agriculture and Environmental Protection, School of Life Science, Huaiyin Normal University, Huai’an 223300, China
- School of Agriculture, Food and Wine & Waite Research Institute, University of Adelaide, Glen Osmond, SA 5064, Australia
- Correspondence: ; Tel.: +61-8-8313-0775
| | - Barbora Stratilová
- Institute of Chemistry, Centre for Glycomics, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia; (B.S.); (E.S.)
- Faculty of Natural Sciences, Department of Physical and Theoretical Chemistry, Comenius University, SK-84215 Bratislava, Slovakia
| | - Eva Stratilová
- Institute of Chemistry, Centre for Glycomics, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia; (B.S.); (E.S.)
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Marconi M, Wabnik K. Shaping the Organ: A Biologist Guide to Quantitative Models of Plant Morphogenesis. FRONTIERS IN PLANT SCIENCE 2021; 12:746183. [PMID: 34675952 PMCID: PMC8523991 DOI: 10.3389/fpls.2021.746183] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Accepted: 09/09/2021] [Indexed: 06/13/2023]
Abstract
Organ morphogenesis is the process of shape acquisition initiated with a small reservoir of undifferentiated cells. In plants, morphogenesis is a complex endeavor that comprises a large number of interacting elements, including mechanical stimuli, biochemical signaling, and genetic prerequisites. Because of the large body of data being produced by modern laboratories, solving this complexity requires the application of computational techniques and analyses. In the last two decades, computational models combined with wet-lab experiments have advanced our understanding of plant organ morphogenesis. Here, we provide a comprehensive review of the most important achievements in the field of computational plant morphodynamics. We present a brief history from the earliest attempts to describe plant forms using algorithmic pattern generation to the evolution of quantitative cell-based models fueled by increasing computational power. We then provide an overview of the most common types of "digital plant" paradigms, and demonstrate how models benefit from diverse techniques used to describe cell growth mechanics. Finally, we highlight the development of computational frameworks designed to resolve organ shape complexity through integration of mechanical, biochemical, and genetic cues into a quantitative standardized and user-friendly environment.
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Affiliation(s)
| | - Krzysztof Wabnik
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Pozuelo de Alarcón (Madrid), Spain
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Zhang Y, Yu J, Wang X, Durachko DM, Zhang S, Cosgrove DJ. Molecular insights into the complex mechanics of plant epidermal cell walls. Science 2021; 372:706-711. [PMID: 33986175 DOI: 10.1126/science.abf2824] [Citation(s) in RCA: 120] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Accepted: 03/29/2021] [Indexed: 12/26/2022]
Abstract
Plants have evolved complex nanofibril-based cell walls to meet diverse biological and physical constraints. How strength and extensibility emerge from the nanoscale-to-mesoscale organization of growing cell walls has long been unresolved. We sought to clarify the mechanical roles of cellulose and matrix polysaccharides by developing a coarse-grained model based on polymer physics that recapitulates aspects of assembly and tensile mechanics of epidermal cell walls. Simple noncovalent binding interactions in the model generate bundled cellulose networks resembling that of primary cell walls and possessing stress-dependent elasticity, stiffening, and plasticity beyond a yield threshold. Plasticity originates from fibril-fibril sliding in aligned cellulose networks. This physical model provides quantitative insight into fundamental questions of plant mechanobiology and reveals design principles of biomaterials that combine stiffness with yielding and extensibility.
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Affiliation(s)
- Yao Zhang
- Department of Biology, Pennsylvania State University, University Park, PA 16802, USA
| | - Jingyi Yu
- Department of Biology, Pennsylvania State University, University Park, PA 16802, USA
| | - Xuan Wang
- Department of Biology, Pennsylvania State University, University Park, PA 16802, USA
| | - Daniel M Durachko
- Department of Biology, Pennsylvania State University, University Park, PA 16802, USA
| | - Sulin Zhang
- Department of Engineering Science and Mechanics and Department of Biomedical Engineering, Pennsylvania State University, University Park, PA 16802, USA.
| | - Daniel J Cosgrove
- Department of Biology, Pennsylvania State University, University Park, PA 16802, USA.
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Chakraborty J, Luo J, Dyson RJ. Lockhart with a twist: Modelling cellulose microfibril deposition and reorientation reveals twisting plant cell growth mechanisms. J Theor Biol 2021; 525:110736. [PMID: 33915144 DOI: 10.1016/j.jtbi.2021.110736] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Revised: 11/26/2020] [Accepted: 04/16/2021] [Indexed: 10/21/2022]
Abstract
Plant morphology emerges from cellular growth and structure. The turgor-driven diffuse growth of a cell can be highly anisotropic: significant longitudinally and negligible radially. Such anisotropy is ensured by cellulose microfibrils (CMF) reinforcing the cell wall in the hoop direction. To maintain the cell's integrity during growth, new wall material including CMF must be continually deposited. We develop a mathematical model representing the cell as a cylindrical pressure vessel and the cell wall as a fibre-reinforced viscous sheet, explicitly including the mechano-sensitive angle of CMF deposition. The model incorporates interactions between turgor, external forces, CMF reorientation during wall extension, and matrix stiffening. Using the model, we reinterpret some recent experimental findings, and reexamine the popular hypothesis of CMF/microtubule alignment. We explore how the handedness of twisting cell growth depends on external torque and intrinsic wall properties, and find that cells twist left-handedly 'by default' in some suitable sense. Overall, this study provides a unified mechanical framework for understanding left- and right-handed twist-growth as seen in many plants.
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Affiliation(s)
- Jeevanjyoti Chakraborty
- School of Mathematics, University of Birmingham, Birmingham B15 2TT, UK; Mechanical Engineering Department, Indian Institute of Technology Kharagpur, Kharagpur 721302, West Bengal, India.
| | - Jingxi Luo
- School of Mathematics, University of Birmingham, Birmingham B15 2TT, UK.
| | - Rosemary J Dyson
- School of Mathematics, University of Birmingham, Birmingham B15 2TT, UK.
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16
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Senoussi R, Porcu E. Nonstationary space–time covariance functions induced by dynamical systems. Scand Stat Theory Appl 2021. [DOI: 10.1111/sjos.12513] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | - Emilio Porcu
- Department of Mathematics Khalifa University Abu Dhabi UAE
- Trinity College Dublin Ireland
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17
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Multiscale and multidisciplinary approach to understanding nanoparticle transport in plants. Curr Opin Chem Eng 2020. [DOI: 10.1016/j.coche.2020.100659] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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18
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Wang X, Wilson L, Cosgrove DJ. Pectin methylesterase selectively softens the onion epidermal wall yet reduces acid-induced creep. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:2629-2640. [PMID: 32006044 PMCID: PMC7210771 DOI: 10.1093/jxb/eraa059] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Accepted: 01/29/2020] [Indexed: 05/02/2023]
Abstract
De-esterification of homogalacturonan (HG) is thought to stiffen pectin gels and primary cell walls by increasing calcium cross-linking between HG chains. Contrary to this idea, recent studies found that HG de-esterification correlated with reduced stiffness of living tissues, measured by surface indentation. The physical basis of such apparent wall softening is unclear, but possibly involves complex biological responses to HG modification. To assess the direct physical consequences of HG de-esterification on wall mechanics without such complications, we treated isolated onion (Allium cepa) epidermal walls with pectin methylesterase (PME) and assessed wall biomechanics with indentation and tensile tests. In nanoindentation assays, PME action softened the wall (reduced the indentation modulus). In tensile force/extension assays, PME increased plasticity, but not elasticity. These softening effects are attributed, at least in part, to increased electrostatic repulsion and swelling of the wall after PME treatment. Despite softening and swelling upon HG de-esterification, PME treatment alone failed to induce cell wall creep. Instead, acid-induced creep, mediated by endogenous α-expansin, was reduced. We conclude that HG de-esterification physically softens the onion wall, yet reduces expansin-mediated wall extensibility.
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Affiliation(s)
- Xuan Wang
- Department of Biology,Pennsylvania State University, University Park, PA USA
| | - Liza Wilson
- Department of Biology,Pennsylvania State University, University Park, PA USA
| | - Daniel J Cosgrove
- Department of Biology,Pennsylvania State University, University Park, PA USA
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19
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Nelissen H, Gonzalez N. Understanding plant organ growth: a multidisciplinary field. JOURNAL OF EXPERIMENTAL BOTANY 2020; 71:7-10. [PMID: 31725876 DOI: 10.1093/jxb/erz448] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Accepted: 09/27/2019] [Indexed: 06/10/2023]
Affiliation(s)
- Hilde Nelissen
- Department of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark, Gent, Belgium
- Center for Plant Systems Biology, VIB, Technologiepark, Gent, Belgium
| | - Nathalie Gonzalez
- INRA, UMR1332 Biologie du fruit et Pathologie, INRA Bordeaux Aquitaine, CS20032, F-33882, Villenave d'Ornon cedex, France
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20
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Bidhendi AJ, Geitmann A. Methods to quantify primary plant cell wall mechanics. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:3615-3648. [PMID: 31301141 DOI: 10.1093/jxb/erz281] [Citation(s) in RCA: 35] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2018] [Accepted: 06/26/2019] [Indexed: 05/23/2023]
Abstract
The primary plant cell wall is a dynamically regulated composite material of multiple biopolymers that forms a scaffold enclosing the plant cells. The mechanochemical make-up of this polymer network regulates growth, morphogenesis, and stability at the cell and tissue scales. To understand the dynamics of cell wall mechanics, and how it correlates with cellular activities, several experimental frameworks have been deployed in recent years to quantify the mechanical properties of plant cells and tissues. Here we critically review the application of biomechanical tool sets pertinent to plant cell mechanics and outline some of their findings, relevance, and limitations. We also discuss methods that are less explored but hold great potential for the field, including multiscale in silico mechanical modeling that will enable a unified understanding of the mechanical behavior across the scales. Our overview reveals significant differences between the results of different mechanical testing techniques on plant material. Specifically, indentation techniques seem to consistently report lower values compared with tensile tests. Such differences may in part be due to inherent differences among the technical approaches and consequently the wall properties that they measure, and partly due to differences between experimental conditions.
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Affiliation(s)
- Amir J Bidhendi
- Department of Plant Science, McGill University, Macdonald Campus, Lakeshore, Ste-Anne-de-Bellevue, Québec, Canada
- Institut de recherche en biologie végétale, Département de sciences biologiques, Université de Montréal, Montreal, Quebec, Canada
| | - Anja Geitmann
- Department of Plant Science, McGill University, Macdonald Campus, Lakeshore, Ste-Anne-de-Bellevue, Québec, Canada
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Geitmann A, Niklas K, Speck T. Plant biomechanics in the 21st century. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:3435-3438. [PMID: 31335955 PMCID: PMC6650134 DOI: 10.1093/jxb/erz280] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Affiliation(s)
- Anja Geitmann
- Department of Plant Science, McGill University, Ste-Anne-de-Bellevue, Québec, Canada
| | - Karl Niklas
- Plant Biology Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, USA
| | - Thomas Speck
- Plant Biomechanics Group Freiburg, Botanic Garden of the Albert-Ludwigs-University of Freiburg, Faculty of Biology, Freiburg, Germany
- Cluster of Excellence livMatS @ FIT – Freiburg Center for Interactive Materials and Bioinspired Technologies, Freiburg, Germany
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