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For: Sevenich FW, Langowski J, Weiss V, Rippe K. DNA binding and oligomerization of NtrC studied by fluorescence anisotropy and fluorescence correlation spectroscopy. Nucleic Acids Res 1998;26:1373-81. [PMID: 9490780 PMCID: PMC147426 DOI: 10.1093/nar/26.6.1373] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]  Open
Number Cited by Other Article(s)
1
Standke HG, Kim L, Owens CP. Purification and Biochemical Characterization of the DNA Binding Domain of the Nitrogenase Transcriptional Activator NifA from Gluconacetobacter diazotrophicus. Protein J 2023;42:802-810. [PMID: 37787923 PMCID: PMC10590331 DOI: 10.1007/s10930-023-10158-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/14/2023] [Indexed: 10/04/2023]
2
Amirbekyan KY, Shahinyan GA, Ghazoyan HH, Sargsyan HR, Markarian SA. Fluorescence anisotropy studies on the Hoechst 33258-DNA interaction: the solvent effect. J Biomol Struct Dyn 2020;39:4902-4906. [PMID: 32568619 DOI: 10.1080/07391102.2020.1782267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
3
Castro NSS, Laia CAT, Maiti BK, Cerqueira NMFSA, Moura I, Carepo MSP. Small phospho-donors phosphorylate MorR without inducing protein conformational changes. Biophys Chem 2018;240:25-33. [PMID: 29883882 DOI: 10.1016/j.bpc.2018.05.009] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2018] [Revised: 05/10/2018] [Accepted: 05/29/2018] [Indexed: 10/14/2022]
4
Mondal S, Chakraborty K, Bandyopadhyay S. Microscopic understanding of the conformational features of a protein–DNA complex. Phys Chem Chem Phys 2017;19:32459-32472. [DOI: 10.1039/c7cp05161a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
5
Wang Y, Liu F, Wang W. Kinetics of transcription initiation directed by multiple cis-regulatory elements on the glnAp2 promoter. Nucleic Acids Res 2016;44:10530-10538. [PMID: 27899598 PMCID: PMC5159524 DOI: 10.1093/nar/gkw1150] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2016] [Revised: 10/31/2016] [Accepted: 11/03/2016] [Indexed: 11/21/2022]  Open
6
Sinha SK, Bandyopadhyay S. Conformational fluctuations of a protein-DNA complex and the structure and ordering of water around it. J Chem Phys 2012;135:245104. [PMID: 22225189 DOI: 10.1063/1.3670877] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]  Open
7
Daher M, Rueda D. Fluorescence characterization of the transfer RNA-like domain of transfer messenger RNA in complex with small binding protein B. Biochemistry 2012;51:3531-8. [PMID: 22482838 DOI: 10.1021/bi201751k] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
8
Perevoshchikova IV, Kotova EA, Antonenko YN. Fluorescence correlation spectroscopy in biology, chemistry, and medicine. BIOCHEMISTRY (MOSCOW) 2011;76:497-516. [PMID: 21639831 DOI: 10.1134/s0006297911050014] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
9
Kirkilionis M, Janus U, Sbano L. Multi-scale genetic dynamic modelling II: application to synthetic biology: an algorithmic Markov chain based approach. Theory Biosci 2011;130:183-201. [PMID: 21509695 DOI: 10.1007/s12064-011-0126-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2009] [Accepted: 02/14/2011] [Indexed: 10/18/2022]
10
Fluorescence Correlation Spectroscopy of the Binding of Nucleotide Excision Repair Protein XPC-hHr23B with DNA Substrates. J Fluoresc 2008;18:987-95. [DOI: 10.1007/s10895-008-0390-6] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2008] [Accepted: 05/26/2008] [Indexed: 10/21/2022]
11
Using fluorophore-labeled oligonucleotides to measure affinities of protein-DNA interactions. Methods Enzymol 2008;450:253-72. [PMID: 19152864 DOI: 10.1016/s0076-6879(08)03412-5] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
12
BoseDasgupta S, Ganguly A, Das BB, Roy A, Khalkho NVM, Majumder HK. The large subunit of Leishmania topoisomerase I functions as the 'molecular steer' in type IB topoisomerase. Mol Microbiol 2007;67:31-46. [PMID: 18036140 DOI: 10.1111/j.1365-2958.2007.06002.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
13
Mutalik VK, Venkatesh KV. A theoretical steady state analysis indicates that induction of Escherichia coli glnALG operon can display all-or-none behavior. Biosystems 2007;90:1-19. [PMID: 16945478 DOI: 10.1016/j.biosystems.2006.06.003] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2006] [Revised: 06/19/2006] [Accepted: 06/19/2006] [Indexed: 10/24/2022]
14
Karymov MA, Krasnoslobodtsev AV, Lyubchenko YL. Dynamics of synaptic SfiI-DNA complex: single-molecule fluorescence analysis. Biophys J 2007;92:3241-50. [PMID: 17277188 PMCID: PMC1852356 DOI: 10.1529/biophysj.106.095778] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
15
Yeh HC, Puleo CM, Lim TC, Ho YP, Giza PE, Huang RCC, Wang TH. A microfluidic-FCS platform for investigation on the dissociation of Sp1-DNA complex by doxorubicin. Nucleic Acids Res 2006;34:e144. [PMID: 17108358 PMCID: PMC1669725 DOI: 10.1093/nar/gkl787] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]  Open
16
Cosa G, Zeng Y, Liu HW, Landes CF, Makarov DE, Musier-Forsyth K, Barbara PF. Evidence for non-two-state kinetics in the nucleocapsid protein chaperoned opening of DNA hairpins. J Phys Chem B 2006;110:2419-26. [PMID: 16471833 DOI: 10.1021/jp054189i] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
17
Hantgan RR, Stahle MC, Connor JH, Horita DA, Rocco M, McLane MA, Yakovlev S, Medved L. Integrin alphaIIbbeta3:ligand interactions are linked to binding-site remodeling. Protein Sci 2006;15:1893-906. [PMID: 16877710 PMCID: PMC2242588 DOI: 10.1110/ps.052049506] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
18
Nakatani K, Horie S, Goto Y, Kobori A, Hagihara S. Evaluation of mismatch-binding ligands as inhibitors for Rev-RRE interaction. Bioorg Med Chem 2006;14:5384-8. [PMID: 16603366 DOI: 10.1016/j.bmc.2006.03.038] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2006] [Revised: 03/20/2006] [Accepted: 03/21/2006] [Indexed: 10/24/2022]
19
Octobre G, Lemercier C, Khochbin S, Robert-Nicoud M, Souchier C. Monitoring the interaction between DNA and a transcription factor (MEF2A) using fluorescence correlation spectroscopy. C R Biol 2005;328:1033-40. [PMID: 16314281 DOI: 10.1016/j.crvi.2005.07.007] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2005] [Revised: 06/21/2005] [Accepted: 07/18/2005] [Indexed: 11/23/2022]
20
Jacob E, Pucshansky L, Zeruya E, Baran N, Manor H. The human protein translin specifically binds single-stranded microsatellite repeats, d(GT)n, and G-strand telomeric repeats, d(TTAGGG)n: a study of the binding parameters. J Mol Biol 2005;344:939-50. [PMID: 15544804 DOI: 10.1016/j.jmb.2004.09.095] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2004] [Revised: 09/23/2004] [Accepted: 09/29/2004] [Indexed: 11/17/2022]
21
Lou HJ, Brister JR, Li JJ, Chen W, Muzyczka N, Tan W. Adeno-associated virus Rep78/Rep68 promotes localized melting of the rep binding element in the absence of adenosine triphosphate. Chembiochem 2004;5:324-32. [PMID: 14997524 DOI: 10.1002/cbic.200300737] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
22
Aggregation behavior of amphiphilic poly(2-alkyl-2-oxazoline) diblock copolymers in aqueous solution studied by fluorescence correlation spectroscopy. Colloid Polym Sci 2004. [DOI: 10.1007/s00396-004-1131-2] [Citation(s) in RCA: 62] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
23
Dou SX, Wang PY, Xu HQ, Xi XG. The DNA binding properties of the Escherichia coli RecQ helicase. J Biol Chem 2003;279:6354-63. [PMID: 14665634 DOI: 10.1074/jbc.m311272200] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
24
Harrod AC, Yang X, Junker M, Reitzer L. Evidence for a second interaction between the regulatory amino-terminal and central output domains of the response regulator NtrC (nitrogen regulator I) in Escherichia coli. J Biol Chem 2003;279:2350-9. [PMID: 14563853 DOI: 10.1074/jbc.m306181200] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
25
Vogel SK, Schulz A, Rippe K. Binding affinity of Escherichia coli RNA polymerase*sigma54 holoenzyme for the glnAp2, nifH and nifL promoters. Nucleic Acids Res 2002;30:4094-101. [PMID: 12235394 PMCID: PMC137104 DOI: 10.1093/nar/gkf519] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
26
Medina MA, Schwille P. Fluorescence correlation spectroscopy for the detection and study of single molecules in biology. Bioessays 2002;24:758-64. [PMID: 12210537 DOI: 10.1002/bies.10118] [Citation(s) in RCA: 136] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
27
Hobart SA, Ilin S, Moriarty DF, Osuna R, Colón W. Equilibrium denaturation studies of the Escherichia coli factor for inversion stimulation: implications for in vivo function. Protein Sci 2002;11:1671-80. [PMID: 12070319 PMCID: PMC2373661 DOI: 10.1110/ps.5050102] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2001] [Revised: 04/04/2002] [Accepted: 04/10/2002] [Indexed: 10/14/2022]
28
Tropel D, van der Meer JR. Identification and physical characterization of the HbpR binding sites of the hbpC and hbpD promoters. J Bacteriol 2002;184:2914-24. [PMID: 12003931 PMCID: PMC135056 DOI: 10.1128/jb.184.11.2914-2924.2002] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
29
Weidemann T, Wachsmuth M, Tewes M, Rippe K, Langowski J. Analysis of Ligand Binding by Two-Colour Fluorescence Cross-Correlation Spectroscopy. ACTA ACUST UNITED AC 2002. [DOI: 10.1002/1438-5171(200204)3:1<49::aid-simo49>3.0.co;2-t] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
30
Hess ST, Huang S, Heikal AA, Webb WW. Biological and chemical applications of fluorescence correlation spectroscopy: a review. Biochemistry 2002;41:697-705. [PMID: 11790090 DOI: 10.1021/bi0118512] [Citation(s) in RCA: 446] [Impact Index Per Article: 20.3] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
31
Goyan R, Paul R, Cramb DT. Photodynamics of Latex Nanospheres Examined Using Two-Photon Fluorescence Correlation Spectroscopy. J Phys Chem B 2001. [DOI: 10.1021/jp0026235] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
32
High Order Autocorrelation in Fluorescence Correlation Spectroscopy. ACTA ACUST UNITED AC 2001. [DOI: 10.1007/978-3-642-59542-4_21] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
33
Ellison DW, McCleary WR. The unphosphorylated receiver domain of PhoB silences the activity of its output domain. J Bacteriol 2000;182:6592-7. [PMID: 11073900 PMCID: PMC111398 DOI: 10.1128/jb.182.23.6592-6597.2000] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
34
Shearwin KE, Egan JB. Establishment of lysogeny in bacteriophage 186. DNA binding and transcriptional activation by the CII protein. J Biol Chem 2000;275:29113-22. [PMID: 10871623 DOI: 10.1074/jbc.m004574200] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
35
Friedler A, Friedler D, Luedtke NW, Tor Y, Loyter A, Gilon C. Development of a functional backbone cyclic mimetic of the HIV-1 Tat arginine-rich motif. J Biol Chem 2000;275:23783-9. [PMID: 10764789 DOI: 10.1074/jbc.m002200200] [Citation(s) in RCA: 46] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
36
Rippe K, Mücke N, Schulz A. Association states of the transcription activator protein NtrC from E. coli determined by analytical ultracentrifugation. J Mol Biol 1998;278:915-33. [PMID: 9600853 DOI: 10.1006/jmbi.1998.1746] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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