1
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Han Z, Xiong D, Schneiter R, Tian C. The function of plant PR1 and other members of the CAP protein superfamily in plant-pathogen interactions. MOLECULAR PLANT PATHOLOGY 2023; 24:651-668. [PMID: 36932700 DOI: 10.1111/mpp.13320] [Citation(s) in RCA: 15] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2022] [Revised: 01/24/2023] [Accepted: 02/16/2023] [Indexed: 05/18/2023]
Abstract
The pathogenesis-related (PR) proteins of plants have originally been identified as proteins that are strongly induced upon biotic and abiotic stress. These proteins fall into 17 distinct classes (PR1-PR17). The mode of action of most of these PR proteins has been well characterized, except for PR1, which belongs to a widespread superfamily of proteins that share a common CAP domain. Proteins of this family are not only expressed in plants but also in humans and in many different pathogens, including phytopathogenic nematodes and fungi. These proteins are associated with a diverse range of physiological functions. However, their precise mode of action has remained elusive. The importance of these proteins in immune defence is illustrated by the fact that PR1 overexpression in plants results in increased resistance against pathogens. However, PR1-like CAP proteins are also produced by pathogens and deletion of these genes results in reduced virulence, suggesting that CAP proteins can exert both defensive and offensive functions. Recent progress has revealed that plant PR1 is proteolytically cleaved to release a C-terminal CAPE1 peptide, which is sufficient to activate an immune response. The release of this signalling peptide is blocked by pathogenic effectors to evade immune defence. Moreover, plant PR1 forms complexes with other PR family members, including PR5, also known as thaumatin, and PR14, a lipid transfer protein, to enhance the host's immune response. Here, we discuss possible functions of PR1 proteins and their interactors, particularly in light of the fact that these proteins can bind lipids, which have important immune signalling functions.
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Affiliation(s)
- Zhu Han
- College of Forestry, Beijing Forestry University, Beijing, China
- Department of Biology, University of Fribourg, Fribourg, Switzerland
| | - Dianguang Xiong
- College of Forestry, Beijing Forestry University, Beijing, China
| | - Roger Schneiter
- Department of Biology, University of Fribourg, Fribourg, Switzerland
| | - Chengming Tian
- College of Forestry, Beijing Forestry University, Beijing, China
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2
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Xing J, Ji D, Duan Z, Chen T, Luo X. Spatiotemporal dynamics of FERONIA reveal alternative endocytic pathways in response to flg22 elicitor stimuli. THE NEW PHYTOLOGIST 2022; 235:518-532. [PMID: 35358335 DOI: 10.1111/nph.18127] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Accepted: 03/23/2022] [Indexed: 06/14/2023]
Abstract
The plant receptor-like kinase FERONIA (FER) functions in the response to multiple extracellular signals, thereby regulating diverse cellular processes, such as polarized cell growth, hormone signaling and responses to pathogens. Here, we reported that in Arabidopsis thaliana, flagellin peptide flg22 stimulus significantly promoted the lateral mobility and dissociation of FER from the plasma membrane by inducing the association of FER with membrane microdomain components. FER underwent constitutive endocytosis and recycling in a brefeldin A (BFA)-sensitive manner via a clathrin-mediated pathway. Following flg22 elicitation, FER localized to bona fide endosomes via two distinct endocytic routes, showing differential sensitivity to BFA. These results at the single-particle level confirm that FER acts as an essential regulator during flg22 perception and immune activation, thus broadening our understanding of location-specific protein dynamics and membrane trafficking in receptor/receptor kinase signaling.
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Affiliation(s)
- Jingjing Xing
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, 475004, China
| | - Dongchao Ji
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Zhikun Duan
- State Key Laboratory of Crop Stress Adaptation and Improvement, School of Life Sciences, Henan University, Kaifeng, 475004, China
| | - Tong Chen
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
| | - Xiaomin Luo
- Key Laboratory of Plant Physiology, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China
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3
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Akamatsu A, Fujiwara M, Hamada S, Wakabayashi M, Yao A, Wang Q, Kosami KI, Dang TT, Kaneko-Kawano T, Fukada F, Shimamoto K, Kawano Y. The Small GTPase OsRac1 Forms Two Distinct Immune Receptor Complexes Containing the PRR OsCERK1 and the NLR Pit. PLANT & CELL PHYSIOLOGY 2021; 62:1662-1675. [PMID: 34329461 DOI: 10.1093/pcp/pcab121] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2020] [Revised: 07/28/2021] [Accepted: 07/30/2021] [Indexed: 06/13/2023]
Abstract
Plants employ two different types of immune receptors, cell surface pattern recognition receptors (PRRs) and intracellular nucleotide-binding and leucine-rich repeat-containing proteins (NLRs), to cope with pathogen invasion. Both immune receptors often share similar downstream components and responses but it remains unknown whether a PRR and an NLR assemble into the same protein complex or two distinct receptor complexes. We have previously found that the small GTPase OsRac1 plays key roles in the signaling of OsCERK1, a PRR for fungal chitin, and of Pit, an NLR for rice blast fungus, and associates directly and indirectly with both of these immune receptors. In this study, using biochemical and bioimaging approaches, we revealed that OsRac1 formed two distinct receptor complexes with OsCERK1 and with Pit. Supporting this result, OsCERK1 and Pit utilized different transport systems for anchorage to the plasma membrane (PM). Activation of OsCERK1 and Pit led to OsRac1 activation and, concomitantly, OsRac1 shifted from a small to a large protein complex fraction. We also found that the chaperone Hsp90 contributed to the proper transport of Pit to the PM and the immune induction of Pit. These findings illuminate how the PRR OsCERK1 and the NLR Pit orchestrate rice immunity through the small GTPase OsRac1.
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Affiliation(s)
- Akira Akamatsu
- Department of Biosciences, Kwansei Gakuin University, 2-1 Gakuen, Hyogo, 669-1337, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
| | - Masayuki Fujiwara
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
- Yanmar Holdings Co., Ltd, 1-32 Chayamachi, Kita Ward, Osaka 530-8311, Japan
| | - Satoshi Hamada
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
| | - Megumi Wakabayashi
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
- Field Solutions North East Asia, Agronomic Operations Japan, Agronomic Technology Station East Japan, Bayer Crop Science K.K., 9511-4 Yuki, Ibaraki 307-0001, Japan
| | - Ai Yao
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
| | - Qiong Wang
- Department of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China
| | - Ken-Ichi Kosami
- CAS Center for Excellence in Molecular Plant Sciences, Shanghai Center for Plant Stress Biology, Chinese Academy of Sciences, No. 3888 Chenhua Road, Shanghai 201602, China
- Fruit Tree Research Center, Ehime Research Institute of Agriculture, Forestry and Fisheries, Matsuyama, 1618 Shimoidaicho, Ehime 791-0112, Japan
| | - Thu Thi Dang
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
- CAS Center for Excellence in Molecular Plant Sciences, Shanghai Center for Plant Stress Biology, Chinese Academy of Sciences, No. 3888 Chenhua Road, Shanghai 201602, China
- IRHS-UMR1345, INRAE, Institut Agro, SFR 4207 QuaSaV, Université d'Angers, Beaucouzé 49071, France
| | - Takako Kaneko-Kawano
- College of Pharmaceutical Sciences, Ritsumeikan University, 1 Chome-1-1 Nojihigashi, Kusatsu, Shiga 525-8577, Japan
| | - Fumi Fukada
- Institute of Plant Science and Resources, Okayama University, Okayama 710-0046, Japan
| | - Ko Shimamoto
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
| | - Yoji Kawano
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama-cho, Ikoma, Nara 630-0192, Japan
- CAS Center for Excellence in Molecular Plant Sciences, Shanghai Center for Plant Stress Biology, Chinese Academy of Sciences, No. 3888 Chenhua Road, Shanghai 201602, China
- Institute of Plant Science and Resources, Okayama University, Okayama 710-0046, Japan
- Kihara Institute for Biological Research, Yokohama City University, 641-12 Maiokachō, Totsuka Ward, Yokohama, Kanagawa 244-0813, Japan
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4
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Detergent Resistant Membrane Domains in Broccoli Plasma Membrane Associated to the Response to Salinity Stress. Int J Mol Sci 2020; 21:ijms21207694. [PMID: 33080920 PMCID: PMC7588934 DOI: 10.3390/ijms21207694] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2020] [Accepted: 10/13/2020] [Indexed: 01/09/2023] Open
Abstract
Detergent-resistant membranes (DRMs) microdomains, or “raft lipids”, are key components of the plasma membrane (PM), being involved in membrane trafficking, signal transduction, cell wall metabolism or endocytosis. Proteins imbibed in these domains play important roles in these cellular functions, but there are few studies concerning DRMs under abiotic stress. In this work, we determine DRMs from the PM of broccoli roots, the lipid and protein content, the vesicles structure, their water osmotic permeability and a proteomic characterization focused mainly in aquaporin isoforms under salinity (80 mM NaCl). Based on biochemical lipid composition, higher fatty acid saturation and enriched sterol content under stress resulted in membranes, which decreased osmotic water permeability with regard to other PM vesicles, but this permeability was maintained under control and saline conditions; this maintenance may be related to a lower amount of total PIP1 and PIP2. Selective aquaporin isoforms related to the stress response such as PIP1;2 and PIP2;7 were found in DRMs and this protein partitioning may act as a mechanism to regulate aquaporins involved in the response to salt stress. Other proteins related to protein synthesis, metabolism and energy were identified in DRMs independently of the treatment, indicating their preference to organize in DMRs.
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5
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Chen Y, Weckwerth W. Mass Spectrometry Untangles Plant Membrane Protein Signaling Networks. TRENDS IN PLANT SCIENCE 2020; 25:930-944. [PMID: 32359835 DOI: 10.1016/j.tplants.2020.03.013] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Revised: 03/26/2020] [Accepted: 03/30/2020] [Indexed: 06/11/2023]
Abstract
Plasma membranes (PMs) act as primary cellular checkpoints for sensing signals and controlling solute transport. Membrane proteins communicate with intracellular processes through protein interaction networks. Deciphering these signaling networks provides crucial information for elucidating in vivo cellular regulation. Large-scale proteomics enables system-wide characterization of the membrane proteome, identification of ligand-receptor pairs, and elucidation of signals originating at membranes. In this review we assess recent progress in the development of mass spectrometry (MS)-based proteomic pipelines for determining membrane signaling pathways. We focus in particular on current techniques for the analysis of membrane protein phosphorylation and interaction, and how these proteins may be connected to downstream changes in gene expression, metabolism, and physiology.
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Affiliation(s)
- Yanmei Chen
- State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University, Beijing 100193, China.
| | - Wolfram Weckwerth
- Department of Functional and Evolutionary Ecology, Molecular Systems Biology (MOSYS), University of Vienna, Vienna, 1090, Austria; Vienna Metabolomics Center (VIME), University of Vienna, Vienna, 1090, Austria.
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6
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Higo A, Saihara N, Miura F, Higashi Y, Yamada M, Tamaki S, Ito T, Tarutani Y, Sakamoto T, Fujiwara M, Kurata T, Fukao Y, Moritoh S, Terada R, Kinoshita T, Ito T, Kakutani T, Shimamoto K, Tsuji H. DNA methylation is reconfigured at the onset of reproduction in rice shoot apical meristem. Nat Commun 2020; 11:4079. [PMID: 32796936 PMCID: PMC7429860 DOI: 10.1038/s41467-020-17963-2] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 07/28/2020] [Indexed: 12/12/2022] Open
Abstract
DNA methylation is an epigenetic modification that specifies the basic state of pluripotent stem cells and regulates the developmental transition from stem cells to various cell types. In flowering plants, the shoot apical meristem (SAM) contains a pluripotent stem cell population which generates the aerial part of plants including the germ cells. Under appropriate conditions, the SAM undergoes a developmental transition from a leaf-forming vegetative SAM to an inflorescence- and flower-forming reproductive SAM. While SAM characteristics are largely altered in this transition, the complete picture of DNA methylation remains elusive. Here, by analyzing whole-genome DNA methylation of isolated rice SAMs in the vegetative and reproductive stages, we show that methylation at CHH sites is kept high, particularly at transposable elements (TEs), in the vegetative SAM relative to the differentiated leaf, and increases in the reproductive SAM via the RNA-dependent DNA methylation pathway. We also show that half of the TEs that were highly methylated in gametes had already undergone CHH hypermethylation in the SAM. Our results indicate that changes in DNA methylation begin in the SAM long before germ cell differentiation to protect the genome from harmful TEs. The shoot apical meristem of flowering plants transitions from forming leaves to floral organs. Here Higo et al. show that DNA methylation of many transposons that are hypermethylated in gametes is established in the SAM before flowering, suggesting it protects against harmful transposition long before germ cell differentiation.
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Affiliation(s)
- Asuka Higo
- Kihara Institute for Biological Research, Yokohama City University, Yokohama, Kanagawa, 244-0813, Japan
| | - Noriko Saihara
- Kihara Institute for Biological Research, Yokohama City University, Yokohama, Kanagawa, 244-0813, Japan.,Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan
| | - Fumihito Miura
- Department of Biochemistry, Kyushu University Graduate School of Medical Sciences, Fukuoka, Fukuoka, 812-8582, Japan.,Precursory Research for Embryonic Science and Technology (PRESTO), Japan Science and Technology Agency (JST), Saitama, Japan
| | - Yoko Higashi
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan
| | - Megumi Yamada
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan
| | - Shojiro Tamaki
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan
| | - Tasuku Ito
- National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.,Department of Genetics, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka, 411-8540, Japan.,Department of Cell and Developmental Biology, John Innes Centre, Norwich Research Park, Norwich, NR4 7UH, UK
| | | | - Tomoaki Sakamoto
- Plant Global Education Project, Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.,Faculty of Life Sciences, Kyoto Sangyo University, Motoyama, Kamigamo, Kita-Ku, Kyoto, 603-8555, Japan
| | - Masayuki Fujiwara
- Plant Global Education Project, Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.,YANMAR HOLDINGS Co. Ltd., Chayamachi 1-32, Kita-ku, Osaka, 530-8311, Japan
| | - Tetsuya Kurata
- Plant Global Education Project, Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.,EditForce Inc., 4th Fl., Tenjin Fukuoka Seimei Bldg., Tenjin 1-9-17, Fukuoka, 810-0001, Japan
| | - Yoichiro Fukao
- Plant Global Education Project, Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, Japan.,Graduate School of Life Science, Ritsumeikan University, Kusatsu, Shiga, 525-8577, Japan
| | - Satoru Moritoh
- National Institute for Physiological Sciences, Okazaki, Aichi, 444-8585, Japan.,College of Pharmaceutical Sciences, Ritsumeikan University, Kusatsu, Shiga, 525-8577, Japan
| | - Rie Terada
- Graduate School of Agriculture, Meijo University, Nagoya, 468-8502, Japan
| | - Toshinori Kinoshita
- Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya, 464-8602, Japan
| | - Takashi Ito
- Department of Biochemistry, Kyushu University Graduate School of Medical Sciences, Fukuoka, Fukuoka, 812-8582, Japan
| | - Tetsuji Kakutani
- National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.,Department of Genetics, School of Life Science, The Graduate University for Advanced Studies (SOKENDAI), Mishima, Shizuoka, 411-8540, Japan.,Faculty of Science, The University of Tokyo, Bunkyo-ku, Tokyo, 113-0033, Japan
| | - Ko Shimamoto
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma, Nara, 630-0192, Japan
| | - Hiroyuki Tsuji
- Kihara Institute for Biological Research, Yokohama City University, Yokohama, Kanagawa, 244-0813, Japan.
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7
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Offor BC, Dubery IA, Piater LA. Prospects of Gene Knockouts in the Functional Study of MAMP-Triggered Immunity: A Review. Int J Mol Sci 2020; 21:ijms21072540. [PMID: 32268496 PMCID: PMC7177850 DOI: 10.3390/ijms21072540] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2020] [Revised: 03/31/2020] [Accepted: 04/01/2020] [Indexed: 12/27/2022] Open
Abstract
Plants depend on both preformed and inducible defence responses to defend themselves against biotic stresses stemming from pathogen attacks. In this regard, plants perceive pathogenic threats from the environment through pattern recognition receptors (PRRs) that recognise microbe-associated molecular patterns (MAMPs), and so induce plant defence responses against invading pathogens. Close to thirty PRR proteins have been identified in plants, however, the molecular mechanisms underlying MAMP perception by these receptors/receptor complexes are not fully understood. As such, knockout (KO) of genes that code for PRRs and co-receptors/defence-associated proteins is a valuable tool to study plant immunity. The loss of gene activity often causes changes in the phenotype of the model plant, allowing in vivo studies of gene function and associated biological mechanisms. Here, we review the functions of selected PRRs, brassinosteroid insensitive 1 (BRI1) associated receptor kinase 1 (BAK1) and other associated defence proteins that have been identified in plants, and also outline KO lines generated by T-DNA insertional mutagenesis as well as the effect on MAMP perception—and triggered immunity (MTI). In addition, we further review the role of membrane raft domains in flg22-induced MTI in Arabidopsis, due to the vital role in the activation of several proteins that are part of the membrane raft domain theory in this regard.
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Affiliation(s)
- Benedict C Offor
- Department of Biochemistry, University of Johannesburg, Auckland Park 2006, South Africa
| | - Ian A Dubery
- Department of Biochemistry, University of Johannesburg, Auckland Park 2006, South Africa
| | - Lizelle A Piater
- Department of Biochemistry, University of Johannesburg, Auckland Park 2006, South Africa
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8
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Dynamics and Endocytosis of Flot1 in Arabidopsis Require CPI1 Function. Int J Mol Sci 2020; 21:ijms21051552. [PMID: 32106431 PMCID: PMC7084554 DOI: 10.3390/ijms21051552] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2020] [Revised: 02/20/2020] [Accepted: 02/21/2020] [Indexed: 01/15/2023] Open
Abstract
Membrane microdomains are nano-scale domains (10–200 nm) enriched in sterols and sphingolipids. They have many important biological functions, including vesicle transport, endocytosis, and pathogen invasion. A previous study reported that the membrane microdomain-associated protein Flotillin1 (Flot1) was involved in plant development in Arabidopsis thaliana; however, whether sterols affect the plant immunity conveyed by Flot1 is unknown. Here, we showed that the root length in sterol-deficient cyclopropylsterol isomerase 1 (cpi1-1) mutants expressing Flot1 was significantly shorter than in control seedlings. The cotyledon epidermal cells in cpi1-1 mutants expressing Flot1 were smaller than in controls. Moreover, variable-angle total internal reflection fluorescence microscopy (VA-TIRFM) and single-particle tracking (SPT) analysis demonstrated that the long-distance Flot1-GFP movement was decreased significantly in cpi1-1 mutants compared with the control seedlings. Meanwhile, the value of the diffusion coefficient Ĝ was dramatically decreased in cpi1-1 mutants after flagelin22 (flg22) treatment compared with the control seedlings, indicating that sterols affect the lateral mobility of Flot1-GFP within the plasma membrane. Importantly, using confocal microscopy, we determined that the endocytosis of Flot1-GFP was decreased in cpi1-1 mutants, which was confirmed by fluorescence cross spectroscopy (FCS) analysis. Hence, these results demonstrate that sterol composition plays a critical role in the plant defense responses of Flot1.
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9
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Xing J, Li X, Wang X, Lv X, Wang L, Zhang L, Zhu Y, Shen Q, Baluška F, Šamaj J, Lin J. Secretion of Phospholipase Dδ Functions as a Regulatory Mechanism in Plant Innate Immunity. THE PLANT CELL 2019; 31:3015-3032. [PMID: 31597687 PMCID: PMC6925013 DOI: 10.1105/tpc.19.00534] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2019] [Revised: 09/20/2019] [Accepted: 10/06/2019] [Indexed: 05/04/2023]
Abstract
Plant phospholipase Ds (PLDs), essential regulators of phospholipid signaling, function in multiple signal transduction cascades; however, the mechanisms regulating PLDs in response to pathogens remain unclear. Here, we found that Arabidopsis (Arabidopsis thaliana) PLDδ accumulated in cells at the entry sites of the barley powdery mildew fungus, Blumeria graminis f. sp hordei Using fluorescence recovery after photobleaching and single-molecule analysis, we observed higher PLDδ density in the plasma membrane after chitin treatment; PLDδ also underwent rapid exocytosis. Fluorescence resonance energy transfer with fluorescence lifetime imaging microscopy showed that the interaction between PLDδ and the microdomain marker AtREMORIN1.3 (AtREM1.3) increased in response to chitin, indicating that exocytosis facilitates rapid, efficient sorting of PLDδ into microdomains upon pathogen stimulus. We further unveiled a trade-off between brefeldin A (BFA)-resistant and -sensitive pathways in secretion of PLDδ under diverse conditions. Upon pathogen attack, PLDδ secretion involved syntaxin-associated VAMP721/722-mediated exocytosis sensitive to BFA. Analysis of phosphatidic acid (PA), hydrogen peroxide, and jasmonic acid (JA) levels and expression of related genes indicated that the relocalization of PLDδ is crucial for its activation to produce PA and initiate reactive oxygen species and JA signaling pathways. Together, our findings revealed that the translocation of PLDδ to papillae is modulated by exocytosis, thus triggering PA-mediated signaling in plant innate immunity.plantcell;31/12/3015/FX1F1fx1.
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Affiliation(s)
- Jingjing Xing
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, Kaifeng 457004, China
| | - Xiaojuan Li
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design and College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Xiaohua Wang
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Xueqin Lv
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design and College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
| | - Li Wang
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Liang Zhang
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Yingfang Zhu
- Key Laboratory of Plant Stress Biology, School of Life Sciences, Henan University, Kaifeng 457004, China
| | - Qianhua Shen
- State Key Laboratory of Plant Cell and Chromosome Engineering, Centre for Molecular Agrobiology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing100101, China
| | - František Baluška
- Institute of Cellular and Molecular Botany, Rheinische Friedrich-Wilhelms-University Bonn, Department of Plant Cell Biology, Bonn D-53115, Germany
| | - Jozef Šamaj
- Centre of the Region Hana for Biotechnological and Agricultural Research, Faculty of Science, Palacky University, Olomouc 78301, Czech Republic
| | - Jinxing Lin
- Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design and College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China
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10
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Mamode Cassim A, Gouguet P, Gronnier J, Laurent N, Germain V, Grison M, Boutté Y, Gerbeau-Pissot P, Simon-Plas F, Mongrand S. Plant lipids: Key players of plasma membrane organization and function. Prog Lipid Res 2018; 73:1-27. [PMID: 30465788 DOI: 10.1016/j.plipres.2018.11.002] [Citation(s) in RCA: 124] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Revised: 11/07/2018] [Accepted: 11/09/2018] [Indexed: 12/29/2022]
Abstract
The plasma membrane (PM) is the biological membrane that separates the interior of all cells from the outside. The PM is constituted of a huge diversity of proteins and lipids. In this review, we will update the diversity of molecular species of lipids found in plant PM. We will further discuss how lipids govern global properties of the plant PM, explaining that plant lipids are unevenly distributed and are able to organize PM in domains. From that observation, it emerges a complex picture showing a spatial and multiscale segregation of PM components. Finally, we will discuss how lipids are key players in the function of PM in plants, with a particular focus on plant-microbe interaction, transport and hormone signaling, abiotic stress responses, plasmodesmata function. The last chapter is dedicated to the methods that the plant membrane biology community needs to develop to get a comprehensive understanding of membrane organization in plants.
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Affiliation(s)
- Adiilah Mamode Cassim
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Paul Gouguet
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Julien Gronnier
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Nelson Laurent
- Agroécologie, AgroSup Dijon, INRA, University of Bourgogne Franche-Comté, F-21000 Dijon, ERL 6003 CNRS, Dijon, France
| | - Véronique Germain
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Magali Grison
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Yohann Boutté
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France
| | - Patricia Gerbeau-Pissot
- Agroécologie, AgroSup Dijon, INRA, University of Bourgogne Franche-Comté, F-21000 Dijon, ERL 6003 CNRS, Dijon, France
| | - Françoise Simon-Plas
- Agroécologie, AgroSup Dijon, INRA, University of Bourgogne Franche-Comté, F-21000 Dijon, ERL 6003 CNRS, Dijon, France.
| | - Sébastien Mongrand
- Laboratoire de Biogenèse Membranaire (LBM), CNRS, University of Bordeaux, UMR 5200, F-33882 Villenave d'Ornon, France.
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11
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Gronnier J, Gerbeau-Pissot P, Germain V, Mongrand S, Simon-Plas F. Divide and Rule: Plant Plasma Membrane Organization. TRENDS IN PLANT SCIENCE 2018; 23:899-917. [PMID: 30174194 DOI: 10.1016/j.tplants.2018.07.007] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2018] [Revised: 07/09/2018] [Accepted: 07/13/2018] [Indexed: 05/24/2023]
Abstract
Since the publication of the fluid mosaic as a relevant model for biological membranes, accumulating evidence has revealed the outstanding complexity of the composition and organization of the plant plasma membrane (PM). Powerful new methodologies have uncovered the remarkable multiscale and multicomponent heterogeneity of PM subcompartmentalization, and this is emerging as a general trait with different features and properties. It is now evident that the dynamics of such a complex organization are intrinsically related to signaling pathways that regulate key physiological processes. Listing and linking recent progress in precisely qualifying these heterogeneities will help to draw an integrated picture of the plant PM. Understanding the key principles governing such a complex dynamic organization will contribute to deciphering the crucial role of the PM in cell physiology.
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Affiliation(s)
- Julien Gronnier
- Laboratoire de Biogenèse Membranaire (LBM), Unité Mixte de Recherche (UMR) 5200, Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux, Bordeaux, France; Present address: Laboratory of Cyril Zipfel, Institute of Plant Biology, University of Zurich, Zollikerstrasse 107, 8008 Zurich, Switzerland
| | - Patricia Gerbeau-Pissot
- Agroécologie, Institut National Supérieur des Sciences Agronomiques, de l'Alimentation, et de l'Environnement (AgroSup) Dijon, CNRS, Institut National de la Recherche Agronomique (INRA), Université Bourgogne Franche-Comté, Dijon, France
| | - Véronique Germain
- Laboratoire de Biogenèse Membranaire (LBM), Unité Mixte de Recherche (UMR) 5200, Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux, Bordeaux, France
| | - Sébastien Mongrand
- Laboratoire de Biogenèse Membranaire (LBM), Unité Mixte de Recherche (UMR) 5200, Centre National de la Recherche Scientifique (CNRS), Université de Bordeaux, Bordeaux, France; These authors contributed equally to this work
| | - Françoise Simon-Plas
- Agroécologie, Institut National Supérieur des Sciences Agronomiques, de l'Alimentation, et de l'Environnement (AgroSup) Dijon, CNRS, Institut National de la Recherche Agronomique (INRA), Université Bourgogne Franche-Comté, Dijon, France; These authors contributed equally to this work.
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12
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Lincoln JE, Sanchez JP, Zumstein K, Gilchrist DG. Plant and animal PR1 family members inhibit programmed cell death and suppress bacterial pathogens in plant tissues. MOLECULAR PLANT PATHOLOGY 2018; 19:2111-2123. [PMID: 29603552 PMCID: PMC6638019 DOI: 10.1111/mpp.12685] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2017] [Revised: 03/14/2018] [Accepted: 03/25/2018] [Indexed: 05/20/2023]
Abstract
A role for programmed cell death (PCD) has been established as the basis for plant-microbe interactions. A functional plant-based cDNA library screen identified possible anti-PCD genes, including one member of the PR1 family, designated P14a, from tomato. Members of the PR1 family have been subject to extensive research in view of their possible role in resistance against pathogens. The PR1 family is represented in every plant species studied to date and homologues have been found in animals, fungi and insects. However, the biological function of the PR1 protein from plants has remained elusive in spite of extensive research regarding a role in the response of plants to disease. Constitutive expression of P14a in transgenic tomato roots protected the roots against PCD triggered by Fumonisin B1, as did the human orthologue GLIPR1, indicating a kingdom crossing function for PR1. Tobacco plants transformed with a P14a-GFP fusion construct and inoculated with Pseudomonas syringae pv. tabaci revealed that the mRNA was abundant throughout the leaves, but the fusion protein was restricted to the lesion margins, where cell death and bacterial spread were arrested. Vitus vinifera grapes expressing the PR1 homologue P14a as a transgene were protected against the cell death symptoms of Pierce's disease. A pull-down assay identified putative PR1-interacting proteins, including members of the Rac1 immune complex, known to function in innate immunity in rice and animal systems. The findings herein are consistent with a role of PR1 in the suppression of cell death-dependent disease symptoms and a possible mode of action.
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Affiliation(s)
- James E. Lincoln
- Department of Plant PathologyUniversity of CaliforniaDavisCA 95616USA
| | - Juan P. Sanchez
- Department of Plant PathologyUniversity of CaliforniaDavisCA 95616USA
- Present address:
Monsanto CompanyWoodlandCA 95695USA
| | - Kristina Zumstein
- Department of Plant PathologyUniversity of CaliforniaDavisCA 95616USA
- Present address:
Department of Plant ScienceUniversity of CaliforniaDavisCA 95616USA
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13
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Komatsu S, Hashiguchi A. Subcellular Proteomics: Application to Elucidation of Flooding-Response Mechanisms in Soybean. Proteomes 2018; 6:E13. [PMID: 29495455 PMCID: PMC5874772 DOI: 10.3390/proteomes6010013] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2018] [Revised: 02/13/2018] [Accepted: 02/23/2018] [Indexed: 02/06/2023] Open
Abstract
Soybean, which is rich in protein and oil, is cultivated in several climatic zones; however, its growth is markedly decreased by flooding. Proteomics is a useful tool for understanding the flooding-response mechanism in soybean. Subcellular proteomics has the potential to elucidate localized cellular responses and investigate communications among subcellular components during plant growth and during stress. Under flooding, proteins related to signaling, stress and the antioxidative system are increased in the plasma membrane; scavenging enzymes for reactive-oxygen species are suppressed in the cell wall; protein translation is suppressed through inhibition of proteins related to preribosome biogenesis and mRNA processing in the nucleus; levels of proteins involved in the electron transport chain are reduced in the mitochondrion; and levels of proteins related to protein folding are decreased in the endoplasmic reticulum. This review discusses the advantages of a gel-free/label-free proteomic technique and methods of plant subcellular purification. It also summarizes cellular events in soybean under flooding and discusses future prospects for generation of flooding-tolerant soybean.
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Affiliation(s)
- Setsuko Komatsu
- Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan.
| | - Akiko Hashiguchi
- Faculty of Medicine, University of Tsukuba, Tsukuba 305-8577, Japan.
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14
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Takahashi D, Uemura M, Kawamura Y. Freezing Tolerance of Plant Cells: From the Aspect of Plasma Membrane and Microdomain. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2018; 1081:61-79. [PMID: 30288704 DOI: 10.1007/978-981-13-1244-1_4] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
Freezing stress is accompanied by a state change from water to ice and has multiple facets causing dehydration; consequently, hyperosmotic and mechanical stresses coupled with unfavorable chilling stress act in a parallel way. Freezing tolerance varies widely among plant species, and, for example, most temperate plants can overcome deleterious effects caused by freezing temperatures in winter. Destabilization and dysfunction of the plasma membrane are tightly linked to freezing injury of plant cells. Plant freezing tolerance increases upon exposure to nonfreezing low temperatures (cold acclimation). Recent studies have unveiled pleiotropic responses of plasma membrane lipids and proteins to cold acclimation. In addition, advanced techniques have given new insights into plasma membrane structural non-homogeneity, namely, microdomains. This chapter describes physiological implications of plasma membrane responses enhancing freezing tolerance during cold acclimation, with a focus on microdomains.
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Affiliation(s)
- Daisuke Takahashi
- Central Infrastructure Group Genomics and Transcript Profiling, Max-Planck-Institute of Molecular Plant Physiology, Potsdam, Germany
| | - Matsuo Uemura
- United Graduate School of Agricultural Sciences and Department of Plant-biosciences, Faculty of Agriculture, Iwate University, Morioka, Japan
| | - Yukio Kawamura
- Cryobiofrontier Research Center and Department of Plant-biosciences, and United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate, Japan.
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15
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Tan S, Zhang P, Xiao W, Feng B, Chen LY, Li S, Li P, Zhao WZ, Qi XT, Yin LP. TMD1 domain and CRAC motif determine the association and disassociation of MxIRT1 with detergent-resistant membranes. Traffic 2017; 19:122-137. [PMID: 29112302 DOI: 10.1111/tra.12540] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2017] [Revised: 11/01/2017] [Accepted: 11/01/2017] [Indexed: 12/23/2022]
Abstract
Iron is essential for most living organisms. The iron-regulated transporter1 (IRT1) plays a major role in iron uptake in roots, and its trafficking from endoplasmic reticulum (ER) to plasma membrane (PM) is tightly coordinated with changes in iron environment. However, studies on the IRT1 response are limited. Here, we report that Malus xiaojinesis IRT1 (MxIRT1) associates with detergent-resistant membranes (DRMs, a biochemical counterpart of PM microdomains), whereas the PM microdomains are known platforms for signal transduction in the PM. Depending on the shift of MxIRT1 from microdomains to homogeneous regions in PM, MxIRT1-mediated iron absorption is activated by the cholesterol recognition/interaction amino acid consensus (CRAC) motif of MxIRT1. MxIRT1 initially associates with DRMs in ER via its transmembrane domain 1 (TMD1), and thus begins DRMs-dependent intracellular trafficking. Subsequently, MxIRT1 is sequestered in COPII vesicles via the ER export signal sequence in MxIRT1. These studies suggest that iron homeostasis is influenced by the CRAC motif and TMD1 domain due to their determination of MxIRT1-DRMs association.
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Affiliation(s)
- Song Tan
- College of Life Science, Capital Normal University, Beijing, China
| | - Peng Zhang
- College of Life Science, Capital Normal University, Beijing, China.,State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China
| | - Wei Xiao
- College of Life Science, Capital Normal University, Beijing, China.,Department of Microbiology and Immunology, University of Saskatchewan, Saskatoon, Canada
| | - Bing Feng
- College of Life Science, Capital Normal University, Beijing, China
| | - Lan-You Chen
- College of Life Science, Capital Normal University, Beijing, China
| | - Shuang Li
- College of Life Science, Capital Normal University, Beijing, China
| | - Peng Li
- School of Life Sciences, Tsinghua University, Beijing, China
| | - Wei-Zhong Zhao
- School of Mathematical Sciences, Capital Normal University, Beijing, China
| | - Xiao-Ting Qi
- College of Life Science, Capital Normal University, Beijing, China
| | - Li-Ping Yin
- College of Life Science, Capital Normal University, Beijing, China
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16
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Fox AR, Maistriaux LC, Chaumont F. Toward understanding of the high number of plant aquaporin isoforms and multiple regulation mechanisms. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2017; 264:179-187. [PMID: 28969798 DOI: 10.1016/j.plantsci.2017.07.021] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2017] [Revised: 07/14/2017] [Accepted: 07/21/2017] [Indexed: 05/20/2023]
Abstract
Since the discovery of the first plant aquaporin (AQP) in 1993, our conception of the way plants control cell water homeostasis as well as their global water balance has been revisited. Plant AQPs constitute a large family of evolutionarily related channels that, in addition to water, can also facilitate the membrane diffusion of a number of small solutes, such as urea, CO2, H2O2, ammonia, metalloids, and even ions, indicating a wide range of cellular functions. At the cellular level, AQPs are subject to various regulation mechanisms leading to active/inactive channels in their target membranes. In this review, we discuss several specific questions that need to be addressed in future research. Why are so many different AQPs simultaneously expressed in specific cellular types? How is their selectivity to different solutes controlled (in particular in the case of multiple permeation properties)? What does the molecular interaction between AQPs and other molecules tell us about their regulation and their involvement in specific cellular and physiological processes? Resolving these questions will definitely help us better understand the physiological advantages that plants have to express and regulate so many AQP isoforms.
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Affiliation(s)
- Ana Romina Fox
- Institut des Sciences de la Vie, Université catholique de Louvain, Croix du Sud 4-L7.07.14, B-1348 Louvain-la-Neuve, Belgium
| | - Laurie C Maistriaux
- Institut des Sciences de la Vie, Université catholique de Louvain, Croix du Sud 4-L7.07.14, B-1348 Louvain-la-Neuve, Belgium
| | - François Chaumont
- Institut des Sciences de la Vie, Université catholique de Louvain, Croix du Sud 4-L7.07.14, B-1348 Louvain-la-Neuve, Belgium.
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17
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Yu M, Liu H, Dong Z, Xiao J, Su B, Fan L, Komis G, Šamaj J, Lin J, Li R. The dynamics and endocytosis of Flot1 protein in response to flg22 in Arabidopsis. JOURNAL OF PLANT PHYSIOLOGY 2017; 215:73-84. [PMID: 28582732 DOI: 10.1016/j.jplph.2017.05.010] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2017] [Revised: 05/16/2017] [Accepted: 05/16/2017] [Indexed: 05/14/2023]
Abstract
Membrane microdomains play vital roles in the process of bacterial infection. The membrane microdomain-associated protein Flot1 acts in an endocytic pathway and is required for seedling development, however, whether Flot1 is a part of host defense mechanisms remains unknown. During an analysis of callose deposition, we found that Flot1 amiRNAi mutants exhibited defects in response to flg22. Using variable-angle total internal reflection fluorescence microscopy (VA-TIRFM), structured illumination microscopy (SIM) and fluorescence cross spectroscopy (FCS), we determined that the dynamic behavior of GFP-Flot1 in Arabidopsis thaliana cotyledon epidermal cells changed significantly in plants treated with the elicitor flg22. Moreover, we found that Flot1 was constitutively recycled via an endocytic pathway and that flg22 could promote endocytosis. Importantly, targeting of Flot1 to the late endosome/vacuole for degradation increased in response to flg22 treatment; immunoblot analysis showed that when triggered by flg22, GFP-Flot1 was gradually degraded in a time-dependent manner. Taken together, these findings support the hypothesis that the changing of dynamics and oligomeric states can promote the endocytosis and degradation of Flot1 under flg22 treatment in plant cells.
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Affiliation(s)
- Meng Yu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Haijiao Liu
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Ziyi Dong
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Jianwei Xiao
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Bodan Su
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Lusheng Fan
- Department of Botany and Plant Sciences, University of California, Riverside, CA 92521, USA
| | - George Komis
- Centre of the Region Hana for Biotechnological and Agricultural Research, Faculty of Science, Palacky University, 78301, Olomouc, Czech Republic
| | - Jozef Šamaj
- Centre of the Region Hana for Biotechnological and Agricultural Research, Faculty of Science, Palacky University, 78301, Olomouc, Czech Republic
| | - Jinxing Lin
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China
| | - Ruili Li
- Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, Beijing Forestry University, Beijing 100083, China; College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
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18
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Minami A, Takahashi D, Kawamura Y, Uemura M. Isolation of Plasma Membrane and Plasma Membrane Microdomains. Methods Mol Biol 2017; 1511:199-212. [PMID: 27730613 DOI: 10.1007/978-1-4939-6533-5_16] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
The plasma membrane surrounds the cytoplasm of a cell and functions as a barrier to separate the intracellular compartment from the extracellular environment. Protein and lipid components distribute nonuniformly and the components form clusters with various functions in the plasma membrane. These clusters are called as "microdomains." In plant cells, microdomains have been studied extensively because they play important roles in biotic/abiotic stress responses, cellular trafficking, and cell wall metabolism. Here we describe a standard protocol for the isolation of the plasma membrane and microdomains from plant cells, Arabidopsis and oat.
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Affiliation(s)
- Anzu Minami
- Bioscience and Biotechnology Center, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, 464-8601, Japan
| | - Daisuke Takahashi
- United Graduate School of Agricultural Sciences and Cryobiofrontier Research Center, Iwate University, 3-18-8 Ueda, Morioka, 020-8550, Japan
| | - Yukio Kawamura
- United Graduate School of Agricultural Sciences and Cryobiofrontier Research Center, Iwate University, 3-18-8 Ueda, Morioka, 020-8550, Japan
| | - Matsuo Uemura
- United Graduate School of Agricultural Sciences and Cryobiofrontier Research Center, Iwate University, 3-18-8 Ueda, Morioka, 020-8550, Japan.
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19
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Nagano M, Ishikawa T, Fujiwara M, Fukao Y, Kawano Y, Kawai-Yamada M, Shimamoto K. Plasma Membrane Microdomains Are Essential for Rac1-RbohB/H-Mediated Immunity in Rice. THE PLANT CELL 2016; 28:1966-83. [PMID: 27465023 PMCID: PMC5006704 DOI: 10.1105/tpc.16.00201] [Citation(s) in RCA: 89] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Revised: 06/09/2016] [Accepted: 07/20/2016] [Indexed: 05/18/2023]
Abstract
Numerous plant defense-related proteins are thought to congregate in plasma membrane microdomains, which consist mainly of sphingolipids and sterols. However, the extent to which microdomains contribute to defense responses in plants is unclear. To elucidate the relationship between microdomains and innate immunity in rice (Oryza sativa), we established lines in which the levels of sphingolipids containing 2-hydroxy fatty acids were decreased by knocking down two genes encoding fatty acid 2-hydroxylases (FAH1 and FAH2) and demonstrated that microdomains were less abundant in these lines. By testing these lines in a pathogen infection assay, we revealed that microdomains play an important role in the resistance to rice blast fungus infection. To illuminate the mechanism by which microdomains regulate immunity, we evaluated changes in protein composition, revealing that microdomains are required for the dynamics of the Rac/ROP small GTPase Rac1 and respiratory burst oxidase homologs (Rbohs) in response to chitin elicitor. Furthermore, FAHs are essential for the production of reactive oxygen species (ROS) after chitin treatment. Together with the observation that RbohB, a defense-related NADPH oxidase that interacts with Rac1, is localized in microdomains, our data indicate that microdomains are required for chitin-induced immunity through ROS signaling mediated by the Rac1-RbohB pathway.
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Affiliation(s)
- Minoru Nagano
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan Graduate School of Science and Engineering, Saitama University, 255 Shimo-okubo, Sakuraku, Saitama 338-8570, Japan
| | - Toshiki Ishikawa
- Graduate School of Science and Engineering, Saitama University, 255 Shimo-okubo, Sakuraku, Saitama 338-8570, Japan
| | - Masayuki Fujiwara
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan Institute for Advanced Biosciences, Keio University, 246-2 Mizukami, Kakuganji, Tsuruoka, Yamagata 997-0052, Japan
| | - Yoichiro Fukao
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan Department of Bioinformatics, Ritsumeikan University, Kusatsu, Shiga 525-8577, Japan
| | - Yoji Kawano
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan Shanghai Center for Plant Stress Biology, Shanghai 201602, P.R. China
| | - Maki Kawai-Yamada
- Graduate School of Science and Engineering, Saitama University, 255 Shimo-okubo, Sakuraku, Saitama 338-8570, Japan
| | - Ko Shimamoto
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
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20
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Abstract
The hypothesis that the Golgi apparatus is capable of sorting proteins and sending them to the plasma membrane through "lipid rafts," membrane lipid domains highly enriched in glycosphingolipids, sphingomyelin, ceramide, and cholesterol, was formulated by van Meer and Simons in 1988 and came to a turning point when it was suggested that lipid rafts could be isolated thanks to their resistance to solubilization by some detergents, namely Triton X-100. An incredible number of papers have described the composition and properties of detergent-resistant membrane fractions. However, the use of this method has also raised the fiercest criticisms. In this chapter, we would like to discuss the most relevant methodological aspects related to the preparation of detergent-resistant membrane fractions, and to discuss the importance of discriminating between what is present on a cell membrane and what we can prepare from cell membranes in a laboratory tube.
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21
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Cambiagno DA, Lonez C, Ruysschaert JM, Alvarez ME. The synthetic cationic lipid diC14 activates a sector of the Arabidopsis defence network requiring endogenous signalling components. MOLECULAR PLANT PATHOLOGY 2015; 16:963-72. [PMID: 25727690 PMCID: PMC6638339 DOI: 10.1111/mpp.12252] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Natural and synthetic elicitors have contributed significantly to the study of plant immunity. Pathogen-derived proteins and carbohydrates that bind to immune receptors, allow the fine dissection of certain defence pathways. Lipids of a different nature that act as defence elicitors, have also been studied, but their specific effects have been less well characterized, and their receptors have not been identified. In animal cells, nanoliposomes of the synthetic cationic lipid 3-tetradecylamino-tert-butyl-N-tetradecylpropionamidine (diC14) activate the TLR4-dependent immune cascade. Here, we have investigated whether this lipid induces Arabidopsis defence responses. At the local level, diC14 activated early and late defence gene markers (FRK1, WRKY29, ICS1 and PR1), acting in a dose-dependent manner. This lipid induced the salicylic acid (SA)-dependent, but not jasmonic acid (JA)-dependent, pathway and protected plants against Pseudomonas syringae pv. tomato (Pst), but not Botrytis cinerea. diC14 was not toxic to plant or pathogen, and potentiated pathogen-induced callose deposition. At the systemic level, diC14 induced PR1 expression and conferred resistance against Pst. diC14-induced defence responses required the signalling protein EDS1, but not NDR1. Curiously, the lipid-induced defence gene expression was lower in the fls2/efr/cerk1 triple mutant, but still unchanged in the single mutants. The amidine headgroup and chain length were important for its activity. Given the robustness of the responses triggered by diC14, its specific action on a defence pathway and the requirement for well-known defence components, this synthetic lipid is emerging as a useful tool to investigate the initial events involved in plant innate immunity.
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Affiliation(s)
- Damián Alejandro Cambiagno
- Centro de Investigaciones en Química Biológica de Córdoba CIQUIBIC, UNC-CONICET, Departamento de Química Biológica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Haya de la Torre y Medina Allende, Ciudad Universitaria, X5000HUA, Córdoba, Argentina
| | - Caroline Lonez
- Laboratory of Structure and Function of Biological Membranes, Université Libre de Bruxelles (ULB), 1050, Brussels, Belgium
- Department of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK
| | - Jean-Marie Ruysschaert
- Laboratory of Structure and Function of Biological Membranes, Université Libre de Bruxelles (ULB), 1050, Brussels, Belgium
| | - María Elena Alvarez
- Centro de Investigaciones en Química Biológica de Córdoba CIQUIBIC, UNC-CONICET, Departamento de Química Biológica, Facultad de Ciencias Químicas, Universidad Nacional de Córdoba, Haya de la Torre y Medina Allende, Ciudad Universitaria, X5000HUA, Córdoba, Argentina
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22
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Ishikawa T, Aki T, Yanagisawa S, Uchimiya H, Kawai-Yamada M. Overexpression of BAX INHIBITOR-1 Links Plasma Membrane Microdomain Proteins to Stress. PLANT PHYSIOLOGY 2015; 169:1333-43. [PMID: 26297139 PMCID: PMC4587443 DOI: 10.1104/pp.15.00445] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2015] [Accepted: 08/17/2015] [Indexed: 05/22/2023]
Abstract
BAX INHIBITOR-1 (BI-1) is a cell death suppressor widely conserved in plants and animals. Overexpression of BI-1 enhances tolerance to stress-induced cell death in plant cells, although the molecular mechanism behind this enhancement is unclear. We recently found that Arabidopsis (Arabidopsis thaliana) BI-1 is involved in the metabolism of sphingolipids, such as the synthesis of 2-hydroxy fatty acids, suggesting the involvement of sphingolipids in the cell death regulatory mechanism downstream of BI-1. Here, we show that BI-1 affects cell death-associated components localized in sphingolipid-enriched microdomains of the plasma membrane in rice (Oryza sativa) cells. The amount of 2-hydroxy fatty acid-containing glucosylceramide increased in the detergent-resistant membrane (DRM; a biochemical counterpart of plasma membrane microdomains) fraction obtained from BI-1-overexpressing rice cells. Comparative proteomics analysis showed quantitative changes of DRM proteins in BI-1-overexpressing cells. In particular, the protein abundance of FLOTILLIN HOMOLOG (FLOT) and HYPERSENSITIVE-INDUCED REACTION PROTEIN3 (HIR3) markedly decreased in DRM of BI-1-overexpressing cells. Loss-of-function analysis demonstrated that FLOT and HIR3 are required for cell death by oxidative stress and salicylic acid, suggesting that the decreased levels of these proteins directly contribute to the stress-tolerant phenotypes in BI-1-overexpressing rice cells. These findings provide a novel biological implication of plant membrane microdomains in stress-induced cell death, which is negatively modulated by BI-1 overexpression via decreasing the abundance of a set of key proteins involved in cell death.
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Affiliation(s)
- Toshiki Ishikawa
- Graduate School of Science and Engineering (T.I., M.K.-Y.) and Institute for Environmental Science and Technology (H.U., M.K.-Y.), Saitama University, Saitama City, Saitama 338-8570, Japan; andGraduate School of Agricultural and Life Sciences (T.A., S.Y.) and Biotechnology Research Center (S.Y.), University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
| | - Toshihiko Aki
- Graduate School of Science and Engineering (T.I., M.K.-Y.) and Institute for Environmental Science and Technology (H.U., M.K.-Y.), Saitama University, Saitama City, Saitama 338-8570, Japan; andGraduate School of Agricultural and Life Sciences (T.A., S.Y.) and Biotechnology Research Center (S.Y.), University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
| | - Shuichi Yanagisawa
- Graduate School of Science and Engineering (T.I., M.K.-Y.) and Institute for Environmental Science and Technology (H.U., M.K.-Y.), Saitama University, Saitama City, Saitama 338-8570, Japan; andGraduate School of Agricultural and Life Sciences (T.A., S.Y.) and Biotechnology Research Center (S.Y.), University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
| | - Hirofumi Uchimiya
- Graduate School of Science and Engineering (T.I., M.K.-Y.) and Institute for Environmental Science and Technology (H.U., M.K.-Y.), Saitama University, Saitama City, Saitama 338-8570, Japan; andGraduate School of Agricultural and Life Sciences (T.A., S.Y.) and Biotechnology Research Center (S.Y.), University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
| | - Maki Kawai-Yamada
- Graduate School of Science and Engineering (T.I., M.K.-Y.) and Institute for Environmental Science and Technology (H.U., M.K.-Y.), Saitama University, Saitama City, Saitama 338-8570, Japan; andGraduate School of Agricultural and Life Sciences (T.A., S.Y.) and Biotechnology Research Center (S.Y.), University of Tokyo, Bunkyo-ku, Tokyo 113-8657, Japan
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Suzuki M, Takahashi S, Kondo T, Dohra H, Ito Y, Kiriiwa Y, Hayashi M, Kamiya S, Kato M, Fujiwara M, Fukao Y, Kobayashi M, Nagata N, Motohashi R. Plastid Proteomic Analysis in Tomato Fruit Development. PLoS One 2015; 10:e0137266. [PMID: 26371478 PMCID: PMC4570674 DOI: 10.1371/journal.pone.0137266] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2013] [Accepted: 08/15/2015] [Indexed: 02/01/2023] Open
Abstract
To better understand the mechanism of plastid differentiation from chloroplast to chromoplast, we examined proteome and plastid changes over four distinct developmental stages of 'Micro-Tom' fruit. Additionally, to discover more about the relationship between fruit color and plastid differentiation, we also analyzed and compared 'Micro-Tom' results with those from two other varieties, 'Black' and 'White Beauty'. We confirmed that proteins related to photosynthesis remain through the orange maturity stage of 'Micro-Tom', and also learned that thylakoids no longer exist at this stage. These results suggest that at a minimum there are changes in plastid morphology occurring before all related proteins change. We also compared 'Micro-Tom' fruits with 'Black' and 'White Beauty' using two-dimensional gel electrophoresis. We found a decrease of CHRC (plastid-lipid-associated protein) and HrBP1 (harpin binding protein-1) in the 'Black' and 'White Beauty' varieties. CHRC is involved in carotenoid accumulation and stabilization. HrBP1 in Arabidopsis has a sequence similar to proteins in the PAP/fibrillin family. These proteins have characteristics and functions similar to lipocalin, an example of which is the transport of hydrophobic molecules. We detected spots of TIL (temperature-induced lipocalin) in 2D-PAGE results, however the number of spots and their isoelectric points differed between 'Micro-Tom' and 'Black'/'White Beauty'. Lipocalin has various functions including those related to environmental stress response, apoptosis induction, membrane formation and fixation, regulation of immune response, cell growth, and metabolism adjustment. Lipocalin related proteins such as TIL and HrBP1 could be related to the accumulation of carotenoids, fruit color and the differentiation of chromoplast.
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Affiliation(s)
- Miho Suzuki
- Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan
| | - Sachiko Takahashi
- Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan
| | - Takanori Kondo
- Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan
| | - Hideo Dohra
- Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan
| | - Yumihiko Ito
- Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan
| | - Yoshikazu Kiriiwa
- Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan
| | - Marina Hayashi
- Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan
| | - Shiori Kamiya
- Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan
| | - Masaya Kato
- Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan
| | - Masayuki Fujiwara
- The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan
| | - Yoichiro Fukao
- The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan
| | - Megumi Kobayashi
- Faculty of Science, Japan Woman’s University, Bunkyo-ku, Tokyo, Japan
| | - Noriko Nagata
- Faculty of Science, Japan Woman’s University, Bunkyo-ku, Tokyo, Japan
| | - Reiko Motohashi
- Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan
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24
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Fehér A, Lajkó DB. Signals fly when kinases meet Rho-of-plants (ROP) small G-proteins. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2015; 237:93-107. [PMID: 26089155 DOI: 10.1016/j.plantsci.2015.05.007] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2015] [Revised: 05/11/2015] [Accepted: 05/12/2015] [Indexed: 05/11/2023]
Abstract
Rho-type small GTP-binding plant proteins function as two-state molecular switches in cellular signalling. There is accumulating evidence that Rho-of-plants (ROP) signalling is positively controlled by plant receptor kinases, through the ROP guanine nucleotide exchange factor proteins. These signalling modules regulate cell polarity, cell shape, hormone responses, and pathogen defence, among other things. Other ROP-regulatory proteins might also be subjected to protein phosphorylation by cellular kinases (e.g., mitogen-activated protein kinases or calcium-dependent protein kinases), in order to integrate various cellular signalling pathways with ROP GTPase-dependent processes. In contrast to the role of kinases in upstream ROP regulation, much less is known about the potential link between ROP GTPases and downstream kinase signalling. In other eukaryotes, Rho-type G-protein-activated kinases are widespread and have a key role in many cellular processes. Recent data indicate the existence of structurally different ROP-activated kinases in plants, but their ROP-dependent biological functions still need to be validated. In addition to these direct interactions, ROPs may also indirectly control the activity of mitogen-activated protein kinases or calcium-dependent protein kinases. These kinases may therefore function as upstream as well as downstream kinases in ROP-mediated signalling pathways, such as the phosphatidylinositol monophosphate kinases involved in cell polarity establishment.
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Affiliation(s)
- Attila Fehér
- Institute of Plant Biology, Biological Research Centre, Hungarian Academy of Sciences, Temesvári krt. 62, H-6726 Szeged, Hungary.
| | - Dézi Bianka Lajkó
- Institute of Plant Biology, Biological Research Centre, Hungarian Academy of Sciences, Temesvári krt. 62, H-6726 Szeged, Hungary
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25
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Cremona A, Orsini F, Corsetto PA, Hoogenboom BW, Rizzo AM. Reversible Dissolution of Microdomains in Detergent-Resistant Membranes at Physiological Temperature. PLoS One 2015; 10:e0132696. [PMID: 26147107 PMCID: PMC4493071 DOI: 10.1371/journal.pone.0132696] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2015] [Accepted: 06/18/2015] [Indexed: 12/14/2022] Open
Abstract
The formation of lipid microdomains ("rafts") is presumed to play an important role in various cellular functions, but their nature remains controversial. Here we report on microdomain formation in isolated, detergent-resistant membranes from MDA-MB-231 human breast cancer cells, studied by atomic force microscopy (AFM). Whereas microdomains were readily observed at room temperature, they shrunk in size and mostly disappeared at higher temperatures. This shrinking in microdomain size was accompanied by a gradual reduction of the height difference between the microdomains and the surrounding membrane, consistent with the behaviour expected for lipids that are laterally segregated in liquid ordered and liquid disordered domains. Immunolabeling experiments demonstrated that the microdomains contained flotillin-1, a protein associated with lipid rafts. The microdomains reversibly dissolved and reappeared, respectively, on heating to and cooling below temperatures around 37 °C, which is indicative of radical changes in local membrane order close to physiological temperature.
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Affiliation(s)
- Andrea Cremona
- Dipartimento di Scienze Farmacologiche e Biomolecolari, Università degli Studi di Milano, Milano, Italy
| | - Francesco Orsini
- Dipartimento di Fisica, Università degli Studi di Milano, Milano, Italy
| | - Paola A. Corsetto
- Dipartimento di Scienze Farmacologiche e Biomolecolari, Università degli Studi di Milano, Milano, Italy
| | - Bart W. Hoogenboom
- London Centre for Nanotechnology, University College London, London, United Kingdom
- Department of Physics and Astronomy, University College London, London, United Kingdom
- * E-mail:
| | - Angela M. Rizzo
- Dipartimento di Scienze Farmacologiche e Biomolecolari, Università degli Studi di Milano, Milano, Italy
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26
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Tapken W, Murphy AS. Membrane nanodomains in plants: capturing form, function, and movement. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:1573-86. [PMID: 25725094 DOI: 10.1093/jxb/erv054] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The plasma membrane is the interface between the cell and the external environment. Plasma membrane lipids provide scaffolds for proteins and protein complexes that are involved in cell to cell communication, signal transduction, immune responses, and transport of small molecules. In animals, fungi, and plants, a substantial subset of these plasma membrane proteins function within ordered sterol- and sphingolipid-rich nanodomains. High-resolution microscopy, lipid dyes, pharmacological inhibitors of lipid biosynthesis, and lipid biosynthetic mutants have been employed to examine the relationship between the lipid environment and protein activity in plants. They have also been used to identify proteins associated with nanodomains and the pathways by which nanodomain-associated proteins are trafficked to their plasma membrane destinations. These studies suggest that plant membrane nanodomains function in a context-specific manner, analogous to similar structures in animals and fungi. In addition to the highly conserved flotillin and remorin markers, some members of the B and G subclasses of ATP binding cassette transporters have emerged as functional markers for plant nanodomains. Further, the glycophosphatidylinositol-anchored fasciclin-like arabinogalactan proteins, that are often associated with detergent-resistant membranes, appear also to have a functional role in membrane nanodomains.
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Affiliation(s)
- Wiebke Tapken
- Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA
| | - Angus S Murphy
- Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD 20742, USA
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27
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Suárez-López P, Tsuji H, Coupland G. A tribute to Ko Shimamoto (1949-2013). JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:6755-6759. [PMID: 24642851 PMCID: PMC4246175 DOI: 10.1093/jxb/eru104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Affiliation(s)
- Paula Suárez-López
- Centre for Research in Agricultural Genomics, CSIC-IRTA-UAB-UB, Campus UAB, Bellaterra (Cerdanyola del Vallès), 08193 Barcelona, Spain
| | - Hiroyuki Tsuji
- Laboratory of Plant Molecular Genetics, Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
| | - George Coupland
- Max Planck Institute for Plant Breeding Research, Carl von Linné Weg 10, D-50829 Cologne, Germany
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28
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Noirot E, Der C, Lherminier J, Robert F, Moricova P, Kiêu K, Leborgne-Castel N, Simon-Plas F, Bouhidel K. Dynamic changes in the subcellular distribution of the tobacco ROS-producing enzyme RBOHD in response to the oomycete elicitor cryptogein. JOURNAL OF EXPERIMENTAL BOTANY 2014; 65:5011-22. [PMID: 24987013 PMCID: PMC4144778 DOI: 10.1093/jxb/eru265] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
Plant NADPH oxidases, also known as respiratory burst oxidase homologues (RBOHs), have been identified as a major source of reactive oxygen species (ROS) during plant-microbe interactions. The subcellular localization of the tobacco (Nicotiana tabacum) ROS-producing enzyme RBOHD was examined in Bright Yellow-2 cells before and after elicitation with the oomycete protein cryptogein using electron and confocal microscopy. The plasma membrane (PM) localization of RBOHD was confirmed and immuno-electron microscopy on purified PM vesicles revealed its distribution in clusters. The presence of the protein fused to GFP was also seen in intracellular compartments, mainly Golgi cisternae. Cryptogein induced, within 1h, a 1.5-fold increase in RBOHD abundance at the PM and a concomitant decrease in the internal compartments. Use of cycloheximide revealed that most of the proteins targeted to the PM upon elicitation were not newly synthesized but may originate from the Golgi pool. ROS accumulation preceded RBOHD transcript- and protein-upregulation, indicating that ROS resulted from the activation of a PM-resident pool of enzymes, and that enzymes newly addressed to the PM were inactive. Taken together, the results indicate that control of RBOH abundance and subcellular localization may play a fundamental role in the mechanism of ROS production.
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Affiliation(s)
- Elodie Noirot
- INRA, UMR1347 Agroécologie, ERL CNRS 6300, Plateforme DImaCell, Centre de Microscopie INRA/Université de Bourgogne, BP 86510, F-21065 Dijon Cedex, France
| | - Christophe Der
- Université de Bourgogne, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21065 Dijon Cedex, France
| | - Jeannine Lherminier
- INRA, UMR1347 Agroécologie, ERL CNRS 6300, Plateforme DImaCell, Centre de Microscopie INRA/Université de Bourgogne, BP 86510, F-21065 Dijon Cedex, France
| | - Franck Robert
- INRA, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21065 Dijon Cedex, France
| | - Pavla Moricova
- INRA, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21065 Dijon Cedex, France Present address: Department of Biochemistry, Faculty of Science, Palacký University in Olomouc, Šlechtitelů 11, CZ-783 71 Olomouc, Czech Republic
| | - Kiên Kiêu
- INRA, UR341 Mathématiques et Informatique Appliquées, F-78352 Jouy-en-Josas Cedex, France
| | - Nathalie Leborgne-Castel
- Université de Bourgogne, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21065 Dijon Cedex, France
| | - Françoise Simon-Plas
- INRA, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21065 Dijon Cedex, France
| | - Karim Bouhidel
- Université de Bourgogne, UMR1347 Agroécologie, ERL CNRS 6300, BP 86510, F-21065 Dijon Cedex, France
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29
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Matsui H, Fujiwara M, Hamada S, Shimamoto K, Nomura Y, Nakagami H, Takahashi A, Hirochika H. Plasma membrane localization is essential for Oryza sativa Pto-interacting protein 1a-mediated negative regulation of immune signaling in rice. PLANT PHYSIOLOGY 2014; 166:327-36. [PMID: 24958714 PMCID: PMC4149718 DOI: 10.1104/pp.114.243873] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Oryza sativa Pto-interacting protein 1a (OsPti1a), an ortholog of tomato (Solanum lycopersicum) SlPti1, functions as a negative regulator of innate immunity in rice (Oryza sativa). In ospti1a mutants, the activation of immune responses, including hypersensitive response-like cell death, is caused by loss of the OsPti1a protein; however, it is as yet unclear how OsPti1a suppresses immune responses. Here, we report that OsPti1a localizes to detergent-resistant membrane fractions of the plasma membrane through lipid modification of the protein's amino terminus, which is highly conserved among Pti1 orthologs in several plant species. Importantly, mislocalization of OsPti1a after deletion of its amino terminus reduced its ability to complement the mutant phenotypes, including hypersensitive response-like cell death. Furthermore, complex formation of OsPti1a depends on its amino terminus-mediated membrane localization. Liquid chromatography-tandem mass spectrometry analysis of OsPti1a complex-interacting proteins identified several defense-related proteins. Collectively, these findings indicate that appropriate complex formation by OsPti1a at the plasma membrane is required for the negative regulation of plant immune responses in rice.
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Affiliation(s)
- Hidenori Matsui
- Disease-Resistant Crops Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan (H.M., A.T., H.H.);Plant Global Educational Project (M.F.) and Laboratory of Plant Molecular Genetics (S.H., K.S.), Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan; andPlant Proteomics Research Unit, RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan (Y.N., H.N.)
| | - Masayuki Fujiwara
- Disease-Resistant Crops Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan (H.M., A.T., H.H.);Plant Global Educational Project (M.F.) and Laboratory of Plant Molecular Genetics (S.H., K.S.), Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan; andPlant Proteomics Research Unit, RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan (Y.N., H.N.)
| | - Satoshi Hamada
- Disease-Resistant Crops Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan (H.M., A.T., H.H.);Plant Global Educational Project (M.F.) and Laboratory of Plant Molecular Genetics (S.H., K.S.), Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan; andPlant Proteomics Research Unit, RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan (Y.N., H.N.)
| | - Ko Shimamoto
- Disease-Resistant Crops Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan (H.M., A.T., H.H.);Plant Global Educational Project (M.F.) and Laboratory of Plant Molecular Genetics (S.H., K.S.), Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan; andPlant Proteomics Research Unit, RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan (Y.N., H.N.)
| | - Yuko Nomura
- Disease-Resistant Crops Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan (H.M., A.T., H.H.);Plant Global Educational Project (M.F.) and Laboratory of Plant Molecular Genetics (S.H., K.S.), Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan; andPlant Proteomics Research Unit, RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan (Y.N., H.N.)
| | - Hirofumi Nakagami
- Disease-Resistant Crops Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan (H.M., A.T., H.H.);Plant Global Educational Project (M.F.) and Laboratory of Plant Molecular Genetics (S.H., K.S.), Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan; andPlant Proteomics Research Unit, RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan (Y.N., H.N.)
| | - Akira Takahashi
- Disease-Resistant Crops Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan (H.M., A.T., H.H.);Plant Global Educational Project (M.F.) and Laboratory of Plant Molecular Genetics (S.H., K.S.), Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan; andPlant Proteomics Research Unit, RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan (Y.N., H.N.)
| | - Hirohiko Hirochika
- Disease-Resistant Crops Research Unit, National Institute of Agrobiological Sciences, Tsukuba 305-8602, Japan (H.M., A.T., H.H.);Plant Global Educational Project (M.F.) and Laboratory of Plant Molecular Genetics (S.H., K.S.), Nara Institute of Science and Technology, Ikoma, Nara 630-0101, Japan; andPlant Proteomics Research Unit, RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan (Y.N., H.N.)
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30
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Bitterlich M, Krügel U, Boldt-Burisch K, Franken P, Kühn C. The sucrose transporter SlSUT2 from tomato interacts with brassinosteroid functioning and affects arbuscular mycorrhiza formation. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2014; 78:877-89. [PMID: 24654931 DOI: 10.1111/tpj.12515] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2013] [Revised: 03/12/2014] [Accepted: 03/13/2014] [Indexed: 05/20/2023]
Abstract
Mycorrhizal plants benefit from the fungal partners by getting better access to soil nutrients. In exchange, the plant supplies carbohydrates to the fungus. The additional carbohydrate demand in mycorrhizal plants was shown to be balanced partially by higher CO2 assimilation and increased C metabolism in shoots and roots. In order to test the role of sucrose transport for fungal development in arbuscular mycorrhizal (AM) tomato, transgenic plants with down-regulated expression of three sucrose transporter genes were analysed. Plants that carried an antisense construct of SlSUT2 (SlSUT2as) repeatedly exhibited increased mycorrhizal colonization and the positive effect of plants to mycorrhiza was abolished. Grafting experiments between transgenic and wild-type rootstocks and scions indicated that mainly the root-specific function of SlSUT2 has an impact on colonization of tomato roots with the AM fungus. Localization of SISUT2 to the periarbuscular membrane indicates a role in back transport of sucrose from the periarbuscular matrix into the plant cell thereby affecting hyphal development. Screening of an expression library for SlSUT2-interacting proteins revealed interactions with candidates involved in brassinosteroid (BR) signaling or biosynthesis. Interaction of these candidates with SlSUT2 was confirmed by bimolecular fluorescence complementation. Tomato mutants defective in BR biosynthesis were analysed with respect to mycorrhizal symbiosis and showed indeed decreased mycorrhization. This finding suggests that BRs affect mycorrhizal infection and colonization. If the inhibitory effect of SlSUT2 on mycorrhizal growth involves components of BR synthesis and of the BR signaling pathway is discussed.
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Affiliation(s)
- Michael Bitterlich
- Plant Physiology Department, Humboldt University of Berlin, Philippstr. 13, Building 12, 10115, Berlin, Germany; Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany
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31
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Fujiwara M, Uemura T, Ebine K, Nishimori Y, Ueda T, Nakano A, Sato MH, Fukao Y. Interactomics of Qa-SNARE in Arabidopsis thaliana. PLANT & CELL PHYSIOLOGY 2014; 55:781-9. [PMID: 24556609 DOI: 10.1093/pcp/pcu038] [Citation(s) in RCA: 43] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Membrane trafficking in plants is involved in cellular development and the adaptation to various environmental changes. SNARE (soluble N-ethylmaleimide-sensitive factor attachment receptor) proteins mediate the fusion between vesicles and organelles to facilitate transport cargo proteins in cells. To characterize further the SNARE protein networks in cells, we carried out interactome analysis of SNARE proteins using 12 transgenic Arabidopsis thaliana plants expressing green fluorescent protein (GFP)-tagged Qa-SNAREs (SYP111, SYP121, SYP122, SYP123, SYP132, SYP21, SYP22, SYP31, SYP32, SYP41, SYP42 and SYP43). Microsomal fractions were prepared from each transgenic root, and subjected to immunoprecipitation (IP) using micromagnetic beads coupled to anti-GFP antibodies. To identify Qa-SNARE-interacting proteins, all immunoprecipitated products were then subjected to mass spectrometric (IP-MS) analysis. The IP-MS data revealed not only known interactions of SNARE proteins, but also unknown interactions. The IP-MS results were next categorized by gene ontology analysis. The data revealed that categories of cellular component organization, the cytoskeleton and endosome were enriched in the SYP2, SYP3 and SYP4 groups. In contrast, transporter activity was classified specifically in the SYP132 group. We also identified a novel interaction between SYP22 and VAMP711, which was validated using co-localization analysis with confocal microscopy and IP. Additional novel SNARE-interacting proteins play roles in vesicle transport and lignin biosynthesis, and were identified as membrane microdomain-related proteins. We propose that Qa-SNARE interactomics is useful for understanding SNARE interactions across the whole cell.
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Affiliation(s)
- Masayuki Fujiwara
- Plant Global Educational Project, Nara Institute of Science and Technology, Ikoma, 630-0192 Japan
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32
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Liu D, Ford KL, Roessner U, Natera S, Cassin AM, Patterson JH, Bacic A. Rice suspension cultured cells are evaluated as a model system to study salt responsive networks in plants using a combined proteomic and metabolomic profiling approach. Proteomics 2014; 13:2046-62. [PMID: 23661342 DOI: 10.1002/pmic.201200425] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2012] [Revised: 04/11/2013] [Accepted: 04/24/2013] [Indexed: 12/31/2022]
Abstract
Salinity is one of the major abiotic stresses affecting plant productivity but surprisingly, a thorough understanding of the salt-responsive networks responsible for sustaining growth and maintaining crop yield remains a significant challenge. Rice suspension culture cells (SCCs), a single cell type, were evaluated as a model system as they provide a ready source of a homogenous cell type and avoid the complications of multicellular tissue types in planta. A combination of growth performance, and transcriptional analyses using known salt-induced genes was performed on control and 100 mM NaCl cultured cells to validate the biological system. Protein profiling was conducted using both DIGE- and iTRAQ-based proteomics approaches. In total, 106 proteins were identified in DIGE experiments and 521 proteins in iTRAQ experiments with 58 proteins common to both approaches. Metabolomic analysis provided insights into both developmental changes and salt-induced changes of rice SCCs at the metabolite level; 134 known metabolites were identified, including 30 amines and amides, 40 organic acids, 40 sugars, sugar acids and sugar alcohols, 21 fatty acids and sterols, and 3 miscellaneous compounds. Our results from proteomic and metabolomic studies indicate that the salt-responsive networks of rice SCCs are extremely complex and share some similarities with thee cellular responses observed in planta. For instance, carbohydrate and energy metabolism pathways, redox signaling pathways, auxin/indole-3-acetic acid pathways and biosynthesis pathways for osmoprotectants are all salt responsive in SCCs enabling cells to maintain cellular function under stress condition. These data are discussed in the context of our understanding of in planta salt-responses.
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Affiliation(s)
- Dawei Liu
- Australian Centre for Plant Functional Genomics, School of Botany, University of Melbourne, Melbourne, VIC, Australia
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Akamatsu A, Wong HL, Fujiwara M, Okuda J, Nishide K, Uno K, Imai K, Umemura K, Kawasaki T, Kawano Y, Shimamoto K. An OsCEBiP/OsCERK1-OsRacGEF1-OsRac1 module is an essential early component of chitin-induced rice immunity. Cell Host Microbe 2014; 13:465-76. [PMID: 23601108 DOI: 10.1016/j.chom.2013.03.007] [Citation(s) in RCA: 151] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2012] [Revised: 01/17/2013] [Accepted: 03/04/2013] [Indexed: 11/30/2022]
Abstract
OsCEBiP, a chitin-binding protein, and OsCERK1, a receptor-like kinase, are plasma membrane (PM) proteins that form a receptor complex essential for fungal chitin-driven immune responses in rice. The signaling events immediately following chitin perception are unclear. Investigating the spatiotemporal regulation of the rice small GTPase OsRac1, we find that chitin induces rapid activation of OsRac1 at the PM. Searching for OsRac1 interactors, we identified OsRacGEF1 as a guanine nucleotide exchange factor for OsRac1. OsRacGEF1 interacts with OsCERK1 and is activated when its C-terminal S549 is phosphorylated by the cytoplasmic domain of OsCERK1 in response to chitin. Activated OsRacGEF1 is required for chitin-driven immune responses and resistance to rice blast fungus infection. Further, a protein complex including OsCERK1 and OsRacGEF1 is transported from the endoplasmic reticulum to the PM. Collectively, our results suggest that OsCEBiP, OsCERK1, OsRacGEF1, and OsRac1 function as key components of a "defensome" critically engaged early during chitin-induced immunity.
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Affiliation(s)
- Akira Akamatsu
- Laboratory of Plant Molecular Genetics, Graduate School of Biological Sciences, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0192, Japan
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Dang F, Wang Y, She J, Lei Y, Liu Z, Eulgem T, Lai Y, Lin J, Yu L, Lei D, Guan D, Li X, Yuan Q, He S. Overexpression of CaWRKY27, a subgroup IIe WRKY transcription factor of Capsicum annuum, positively regulates tobacco resistance to Ralstonia solanacearum infection. PHYSIOLOGIA PLANTARUM 2014; 150:397-411. [PMID: 24032447 DOI: 10.1111/ppl.12093] [Citation(s) in RCA: 94] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2013] [Revised: 07/16/2013] [Accepted: 07/18/2013] [Indexed: 05/20/2023]
Abstract
WRKY proteins are encoded by a large gene family and are linked to many biological processes across a range of plant species. The functions and underlying mechanisms of WRKY proteins have been investigated primarily in model plants such as Arabidopsis and rice. The roles of these transcription factors in non-model plants, including pepper and other Solanaceae, are poorly understood. Here, we characterize the expression and function of a subgroup IIe WRKY protein from pepper (Capsicum annuum), denoted as CaWRKY27. The protein localized to nuclei and activated the transcription of a reporter GUS gene construct driven by the 35S promoter that contained two copies of the W-box in its proximal upstream region. Inoculation of pepper cultivars with Ralstonia solanacearum induced the expression of CaWRKY27 transcript in 76a, a bacterial wilt-resistant pepper cultivar, whereas it downregulated the expression of CaWRKY27 transcript in Gui-1-3, a bacterial wilt-susceptible pepper cultivar. CaWRKY27 transcript levels were also increased by treatments with salicylic acid (SA), methyl jasmonate (MeJA) and ethephon (ETH). Transgenic tobacco plants overexpressing CaWRKY27 exhibited resistance to R. solanacearum infection compared to that of wild-type plants. This resistance was coupled with increased transcript levels in a number of marker genes, including hypersensitive response genes, and SA-, JA- and ET-associated genes. By contrast, virus-induced gene silencing (VIGS) of CaWRKY27 increased the susceptibility of pepper plants to R. solanacearum infection. These results suggest that CaWRKY27 acts as a positive regulator in tobacco resistance responses to R. solanacearum infection through modulation of SA-, JA- and ET-mediated signaling pathways.
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Affiliation(s)
- Fengfeng Dang
- National Education Minster Key Laboratory of Plant Genetic Improvement and Comprehensive Utilization, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China; College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian, 350002, China
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Bouhidel K. Plasma membrane protein trafficking in plant-microbe interactions: a plant cell point of view. FRONTIERS IN PLANT SCIENCE 2014; 5:735. [PMID: 25566303 PMCID: PMC4273610 DOI: 10.3389/fpls.2014.00735] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2014] [Accepted: 12/03/2014] [Indexed: 05/21/2023]
Abstract
In order to ensure their physiological and cellular functions, plasma membrane (PM) proteins must be properly conveyed from their site of synthesis, i.e., the endoplasmic reticulum, to their final destination, the PM, through the secretory pathway. PM protein homeostasis also relies on recycling and/or degradation, two processes that are initiated by endocytosis. Vesicular membrane trafficking events to and from the PM have been shown to be altered when plant cells are exposed to mutualistic or pathogenic microbes. In this review, we will describe the fine-tune regulation of such alterations, and their consequence in PM protein activity. We will consider the formation of intracellular perimicrobial compartments, the PM protein trafficking machinery of the host, and the delivery or retrieval of signaling and transport proteins such as pattern-recognition receptors, producers of reactive oxygen species, and sugar transporters.
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Affiliation(s)
- Karim Bouhidel
- UMR1347 Agroécologie AgroSup/INRA/uB, ERL CNRS 6300, Université de Bourgogne , Dijon, France
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Shimada TL, Takano Y, Shimada T, Fujiwara M, Fukao Y, Mori M, Okazaki Y, Saito K, Sasaki R, Aoki K, Hara-Nishimura I. Leaf oil body functions as a subcellular factory for the production of a phytoalexin in Arabidopsis. PLANT PHYSIOLOGY 2014; 164:105-18. [PMID: 24214535 PMCID: PMC3875792 DOI: 10.1104/pp.113.230185] [Citation(s) in RCA: 82] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2013] [Accepted: 10/28/2013] [Indexed: 05/18/2023]
Abstract
Oil bodies are intracellular structures present in the seed and leaf cells of many land plants. Seed oil bodies are known to function as storage compartments for lipids. However, the physiological function of leaf oil bodies is unknown. Here, we show that leaf oil bodies function as subcellular factories for the production of a stable phytoalexin in response to fungal infection and senescence. Proteomic analysis of oil bodies prepared from Arabidopsis (Arabidopsis thaliana) leaves identified caleosin (CLO3) and α-dioxygenase (α-DOX1). Both CLO3 and α-DOX1 were localized on the surface of oil bodies. Infection with the pathogenic fungus Colletotrichum higginsianum promoted the formation of CLO3- and α-DOX1-positive oil bodies in perilesional areas surrounding the site of infection. α-DOX1 catalyzes the reaction from α-linolenic acid (a major fatty acid component of oil bodies) to an unstable compound, 2-hydroperoxy-octadecatrienoic acid (2-HPOT). Intriguingly, a combination of α-DOX1 and CLO3 produced a stable compound, 2-hydroxy-octadecatrienoic acid (2-HOT), from α-linolenic acid. This suggests that the colocalization of α-DOX1 and CLO3 on oil bodies might prevent the degradation of unstable 2-HPOT by efficiently converting 2-HPOT into the stable compound 2-HOT. We found that 2-HOT had antifungal activity against members of the genus Colletotrichum and that infection with C. higginsianum induced 2-HOT production. These results defined 2-HOT as an Arabidopsis phytoalexin. This study provides, to our knowledge, the first evidence that leaf oil bodies produce a phytoalexin under a pathological condition, which suggests a new mechanism of plant defense.
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Affiliation(s)
- Takashi L. Shimada
- Graduate School of Science (T.L.S., T.S., I.H.-N.) and Graduate School of Agriculture (T.L.S., Y.T.), Kyoto University, Sakyo-ku, Kyoto 606–8502, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630–0101, Japan (M.F., Y.F.)
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa 921–8836, Japan (M.M.)
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230–0045, Japan (Y.O., K.S.)
- Graduate School of Pharmaceutical Sciences, Chiba University, Chuo-ku, Chiba 260–8675, Japan (K.S.)
- Kazusa DNA Research Institute, Kisarazu, Chiba 292–0818, Japan (R.S., K.A.)
| | - Yoshitaka Takano
- Graduate School of Science (T.L.S., T.S., I.H.-N.) and Graduate School of Agriculture (T.L.S., Y.T.), Kyoto University, Sakyo-ku, Kyoto 606–8502, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630–0101, Japan (M.F., Y.F.)
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa 921–8836, Japan (M.M.)
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230–0045, Japan (Y.O., K.S.)
- Graduate School of Pharmaceutical Sciences, Chiba University, Chuo-ku, Chiba 260–8675, Japan (K.S.)
- Kazusa DNA Research Institute, Kisarazu, Chiba 292–0818, Japan (R.S., K.A.)
| | - Tomoo Shimada
- Graduate School of Science (T.L.S., T.S., I.H.-N.) and Graduate School of Agriculture (T.L.S., Y.T.), Kyoto University, Sakyo-ku, Kyoto 606–8502, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630–0101, Japan (M.F., Y.F.)
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa 921–8836, Japan (M.M.)
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230–0045, Japan (Y.O., K.S.)
- Graduate School of Pharmaceutical Sciences, Chiba University, Chuo-ku, Chiba 260–8675, Japan (K.S.)
- Kazusa DNA Research Institute, Kisarazu, Chiba 292–0818, Japan (R.S., K.A.)
| | - Masayuki Fujiwara
- Graduate School of Science (T.L.S., T.S., I.H.-N.) and Graduate School of Agriculture (T.L.S., Y.T.), Kyoto University, Sakyo-ku, Kyoto 606–8502, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630–0101, Japan (M.F., Y.F.)
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa 921–8836, Japan (M.M.)
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230–0045, Japan (Y.O., K.S.)
- Graduate School of Pharmaceutical Sciences, Chiba University, Chuo-ku, Chiba 260–8675, Japan (K.S.)
- Kazusa DNA Research Institute, Kisarazu, Chiba 292–0818, Japan (R.S., K.A.)
| | - Yoichiro Fukao
- Graduate School of Science (T.L.S., T.S., I.H.-N.) and Graduate School of Agriculture (T.L.S., Y.T.), Kyoto University, Sakyo-ku, Kyoto 606–8502, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630–0101, Japan (M.F., Y.F.)
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa 921–8836, Japan (M.M.)
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230–0045, Japan (Y.O., K.S.)
- Graduate School of Pharmaceutical Sciences, Chiba University, Chuo-ku, Chiba 260–8675, Japan (K.S.)
- Kazusa DNA Research Institute, Kisarazu, Chiba 292–0818, Japan (R.S., K.A.)
| | - Masashi Mori
- Graduate School of Science (T.L.S., T.S., I.H.-N.) and Graduate School of Agriculture (T.L.S., Y.T.), Kyoto University, Sakyo-ku, Kyoto 606–8502, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630–0101, Japan (M.F., Y.F.)
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa 921–8836, Japan (M.M.)
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230–0045, Japan (Y.O., K.S.)
- Graduate School of Pharmaceutical Sciences, Chiba University, Chuo-ku, Chiba 260–8675, Japan (K.S.)
- Kazusa DNA Research Institute, Kisarazu, Chiba 292–0818, Japan (R.S., K.A.)
| | - Yozo Okazaki
- Graduate School of Science (T.L.S., T.S., I.H.-N.) and Graduate School of Agriculture (T.L.S., Y.T.), Kyoto University, Sakyo-ku, Kyoto 606–8502, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630–0101, Japan (M.F., Y.F.)
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa 921–8836, Japan (M.M.)
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230–0045, Japan (Y.O., K.S.)
- Graduate School of Pharmaceutical Sciences, Chiba University, Chuo-ku, Chiba 260–8675, Japan (K.S.)
- Kazusa DNA Research Institute, Kisarazu, Chiba 292–0818, Japan (R.S., K.A.)
| | - Kazuki Saito
- Graduate School of Science (T.L.S., T.S., I.H.-N.) and Graduate School of Agriculture (T.L.S., Y.T.), Kyoto University, Sakyo-ku, Kyoto 606–8502, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630–0101, Japan (M.F., Y.F.)
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa 921–8836, Japan (M.M.)
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230–0045, Japan (Y.O., K.S.)
- Graduate School of Pharmaceutical Sciences, Chiba University, Chuo-ku, Chiba 260–8675, Japan (K.S.)
- Kazusa DNA Research Institute, Kisarazu, Chiba 292–0818, Japan (R.S., K.A.)
| | - Ryosuke Sasaki
- Graduate School of Science (T.L.S., T.S., I.H.-N.) and Graduate School of Agriculture (T.L.S., Y.T.), Kyoto University, Sakyo-ku, Kyoto 606–8502, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630–0101, Japan (M.F., Y.F.)
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa 921–8836, Japan (M.M.)
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230–0045, Japan (Y.O., K.S.)
- Graduate School of Pharmaceutical Sciences, Chiba University, Chuo-ku, Chiba 260–8675, Japan (K.S.)
- Kazusa DNA Research Institute, Kisarazu, Chiba 292–0818, Japan (R.S., K.A.)
| | - Koh Aoki
- Graduate School of Science (T.L.S., T.S., I.H.-N.) and Graduate School of Agriculture (T.L.S., Y.T.), Kyoto University, Sakyo-ku, Kyoto 606–8502, Japan
- Graduate School of Biological Sciences, Nara Institute of Science and Technology, Ikoma 630–0101, Japan (M.F., Y.F.)
- Research Institute for Bioresources and Biotechnology, Ishikawa Prefectural University, Ishikawa 921–8836, Japan (M.M.)
- RIKEN Center for Sustainable Resource Science, Tsurumi-ku, Yokohama 230–0045, Japan (Y.O., K.S.)
- Graduate School of Pharmaceutical Sciences, Chiba University, Chuo-ku, Chiba 260–8675, Japan (K.S.)
- Kazusa DNA Research Institute, Kisarazu, Chiba 292–0818, Japan (R.S., K.A.)
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Bitterlich M, Krügel U, Boldt-Burisch K, Franken P, Kühn C. Interaction of brassinosteroid functions and sucrose transporter SlSUT2 regulate the formation of arbuscular mycorrhiza. PLANT SIGNALING & BEHAVIOR 2014; 9:e970426. [PMID: 25482803 PMCID: PMC4622791 DOI: 10.4161/15592316.2014.970426] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/06/2014] [Revised: 07/08/2014] [Accepted: 07/08/2014] [Indexed: 05/18/2023]
Abstract
Transgenic tomato plants with reduced expression of the sucrose transporter SlSUT2 showed higher efficiency of mycorrhization suggesting a sucrose retrieval function of SlSUT2 from the peri-arbuscular space back into the cell cytoplasm plant cytoplasm thereby limiting mycorrhiza fungal development. Sucrose uptake in colonized root cells requires efficient plasma membrane-targeting of SlSUT2 which is often retained intracellularly in vacuolar vesicles. Protein-protein interaction studies suggested a link between SISUT2 function and components of brassinosteroid biosynthesis and signaling. Indeed, the tomato DWARF mutant d(x) defective in BR synthesis (1) showed significantly reduced mycorrhization parameters. (2) The question has been raised whether the impact of brassinosteroids on mycorrhization is a general phenomenon. Here, we include a rice mutant defective in DIM1/DWARF1 involved in BR biosynthesis to investigate the effects on mycorrhization. A model is presented where brassinolides are able to impact mycorrhization by activating SUT2 internalization and inhibiting its role in sucrose retrieval.
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Key Words
- AM, arbuscular mycorrhiza
- BR, brassinosteroids
- DIM, diminuto
- DRM, detergent resistant membrane
- GO, gene ontology
- LRR, leucine-rich repeat
- MSBP, membrane steroid binding protein
- Oryza sativa
- PCR, polymerase chain reaction
- RNA, ribonucleic acid
- Rhizophagus irregularis
- SNARE, soluble N-ethylmaleimide-sensitive-factor attachment receptor
- SUC, sucrose carrier
- SUT, sucrose transporter
- arbuscular mycorrhiza
- brassinosteroid
- membrane trafficking
- protein-protein interactions
- sucrose transport
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Affiliation(s)
- Michael Bitterlich
- Humboldt University of Berlin; Plant Physiology Department; Berlin, Germany
- Institute of Vegetable and Ornamental Crops; Großbeeren, Germany
| | - Undine Krügel
- Humboldt University of Berlin; Plant Physiology Department; Berlin, Germany
- University of Zurich; Institute of Plant Biology, Zurich, Switzerland
| | - Katja Boldt-Burisch
- Humboldt University of Berlin; Plant Physiology Department; Berlin, Germany
- Helmholtz Center Potsdam; German Research Center for Geoscience; Potsdam, Germany
| | - Philipp Franken
- Humboldt University of Berlin; Plant Physiology Department; Berlin, Germany
- Institute of Vegetable and Ornamental Crops; Großbeeren, Germany
| | - Christina Kühn
- Humboldt University of Berlin; Plant Physiology Department; Berlin, Germany
- Correspondence to: Christina Kühn;
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Hamada T, Nagasaki-Takeuchi N, Kato T, Fujiwara M, Sonobe S, Fukao Y, Hashimoto T. Purification and characterization of novel microtubule-associated proteins from Arabidopsis cell suspension cultures. PLANT PHYSIOLOGY 2013; 163:1804-16. [PMID: 24134884 PMCID: PMC3850192 DOI: 10.1104/pp.113.225607] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Plant microtubules (MTs) play essential roles in cell division, anisotropic cell expansion, and overall organ morphology. Microtubule-associated proteins (MAPs) bind to MTs and regulate their dynamics, stability, and organization. Identifying the full set of MAPs in plants would greatly enhance our understanding of how diverse MT arrays are formed and function; however, few proteomics studies have characterized plant MAPs. Using liquid chromatography-tandem mass spectrometry, we identified hundreds of proteins from MAP-enriched preparations derived from cell suspension cultures of Arabidopsis (Arabidopsis thaliana). Previously reported MAPs, MT regulators, kinesins, dynamins, peroxisome-resident enzymes, and proteins implicated in replication, transcription, and translation were highly enriched. Dozens of proteins of unknown function were identified, among which 12 were tagged with green fluorescent protein (GFP) and examined for their ability to colocalize with MTs when transiently expressed in plant cells. Six proteins did indeed colocalize with cortical MTs in planta. We further characterized one of these MAPs, designated as BASIC PROLINE-RICH PROTEIN1 (BPP1), which belongs to a seven-member family in Arabidopsis. BPP1-GFP decorated interphase and mitotic MT arrays in transgenic Arabidopsis plants. A highly basic, conserved region was responsible for the in vivo MT association. Overexpression of BPP1-GFP stabilized MTs, caused right-handed helical growth in rapidly elongating tissues, promoted the formation of transverse MT arrays, and resulted in the outgrowth of epidermal cells in light-grown hypocotyls. Our high-quality proteome database of Arabidopsis MAP-enriched preparations is a useful resource for identifying novel MT regulators and evaluating potential MT associations of proteins known to have other cellular functions.
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Takahashi D, Kawamura Y, Uemura M. Changes of detergent-resistant plasma membrane proteins in oat and rye during cold acclimation: association with differential freezing tolerance. J Proteome Res 2013; 12:4998-5011. [PMID: 24111712 DOI: 10.1021/pr400750g] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
Cold acclimation (CA) results in an increase in freezing tolerance of plants, which is closely associated to functional changes of the plasma membrane (PM). Although proteomic studies have revealed compositional changes of the PM during CA, there has been no large-scale study of how the microdomains in the PM, which contains specific lipids and proteins, change during CA. Therefore, we conducted semiquantitative shotgun proteomics using microdomain-enriched detergent-resistant membrane (DRM) fractions extracted from low freezing-tolerant oat and highly freezing-tolerant rye. We identified 740 and 809 DRM proteins in oat and rye, respectively. Among the proteins identified, the abundances of a variety of proteins, such as P-type ATPase and aquaporins, were affected by CA in both oat and rye. Some CA-responsive proteins in the DRM fractions, such as heat shock protein 70, changed differently in oat and rye. In addition, changes in lipocalins and sugar transporters in the DRM fractions were different from those found in total PM fraction during CA. This is the first report to describe compositional changes in the DRM during CA. The proteomic profiles obtained in the present study hint at many possible microdomain functions associated with CA and freezing tolerance.
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Affiliation(s)
- Daisuke Takahashi
- United Graduate School of Agricultural Sciences and ‡Cryobiofrontier Research Center, Iwate University , 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan
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Yoshida K, Ohnishi M, Fukao Y, Okazaki Y, Fujiwara M, Song C, Nakanishi Y, Saito K, Shimmen T, Suzaki T, Hayashi F, Fukaki H, Maeshima M, Mimura T. Studies on vacuolar membrane microdomains isolated from Arabidopsis suspension-cultured cells: local distribution of vacuolar membrane proteins. PLANT & CELL PHYSIOLOGY 2013; 54:1571-84. [PMID: 23903016 DOI: 10.1093/pcp/pct107] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
The local distribution of both the vacuolar-type proton ATPase (V-ATPase) and the vacuolar-type proton pyrophosphatase (V-PPase), the main vacuolar proton pumps, was investigated in intact vacuoles isolated from Arabidopsis suspension-cultured cells. Fluorescent immunostaining showed that V-PPase was distributed evenly on the vacuolar membrane (VM), but V-ATPase localized to specific regions of the VM. We hypothesize that there may be membrane microdomains on the VM. To confirm this hypothesis, we prepared detergent-resistant membranes (DRMs) from the VM in accordance with well established conventional methods. Analyses of fatty acid composition suggested that DRMs had more saturated fatty acids compared with the whole VM in phosphatidylcholine and phosphatidylethanolamine. In the proteomic analyses of both DRMs and detergent-soluble mebranes (DSMs), we confirmed the different local distributions of V-ATPase and V-PPase. The observations of DRMs with an electron microscope supported the existence of different areas on the VM. Moreover, it was observed using total internal reflection fluorescent microscopy (TIRFM) that proton pumps were frequently immobilized at specific sites on the VM. In the proteomic analyses, we also found that many other vacuolar membrane proteins are distributed differently in DRMs and DSMs. Based on the results of this study, we discuss the possibility that VM microdomains might contribute to vacuolar dynamics.
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Affiliation(s)
- Katsuhisa Yoshida
- Graduate School of Science, Kobe University, 1-1 Rokkodai, Nada, Kobe, 657-8501 Japan
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Srivastava V, Malm E, Sundqvist G, Bulone V. Quantitative proteomics reveals that plasma membrane microdomains from poplar cell suspension cultures are enriched in markers of signal transduction, molecular transport, and callose biosynthesis. Mol Cell Proteomics 2013; 12:3874-85. [PMID: 24051156 DOI: 10.1074/mcp.m113.029033] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
The plasma membrane (PM) is a highly dynamic interface that contains detergent-resistant microdomains (DRMs). The aim of this work was to determine the main functions of such microdomains in poplar through a proteomic analysis using gel-based and solution (iTRAQ) approaches. A total of 80 proteins from a limited number of functional classes were found to be significantly enriched in DRM relative to PM. The enriched proteins are markers of signal transduction, molecular transport at the PM, or cell wall biosynthesis. Their intrinsic properties are presented and discussed together with the biological significance of their enrichment in DRM. Of particular importance is the significant and specific enrichment of several callose [(1 → 3)-β-glucan] synthase isoforms, whose catalytic activity represents a final response to stress, leading to the deposition of callose plugs at the surface of the PM. An integrated functional model that connects all DRM-enriched proteins identified is proposed. This report is the only quantitative analysis available to date of the protein composition of membrane microdomains from a tree species.
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Affiliation(s)
- Vaibhav Srivastava
- Division of Glycoscience, School of Biotechnology, Royal Institute of Technology (KTH), AlbaNova University Centre, 106 91 Stockholm, Sweden
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Takahashi D, Kawamura Y, Uemura M. Detergent-resistant plasma membrane proteome to elucidate microdomain functions in plant cells. FRONTIERS IN PLANT SCIENCE 2013; 4:27. [PMID: 23440896 PMCID: PMC3579295 DOI: 10.3389/fpls.2013.00027] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2012] [Accepted: 02/05/2013] [Indexed: 05/20/2023]
Abstract
Although proteins and lipids have been assumed to be distributed homogeneously in the plasma membrane (PM), recent studies suggest that the PM is in fact non-uniform structure that includes a number of lateral domains enriched in specific components (i.e., sterols, sphingolipids, and some kind of proteins). These domains are called as microdomains and considered to be the platform of biochemical reaction center for various physiological processes. Microdomain is able to be extracted as detergent-resistant membrane (DRM) fractions, and DRM fractions isolated from some plant species have been used for proteome and other biochemical characterizations to understand microdomain functions. Profiling of sterol-dependent proteins using a putative microdomain-disrupting agent suggests specific lipid-protein interactions in the microdomain. Furthermore, DRM proteomes dynamically respond to biotic and abiotic stresses in some plant species. Taken together, these results suggest that DRM proteomic studies provide us important information to understand physiological functions of microdomains that are critical to prosecute plant's life cycle successfully in the aspect of development and stress responses.
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Affiliation(s)
- Daisuke Takahashi
- United Graduate School of Agricultural Sciences, Iwate UniversityMorioka, Japan
| | - Yukio Kawamura
- United Graduate School of Agricultural Sciences, Iwate UniversityMorioka, Japan
- Cryobiofrontier Research Center, Faculty of Agriculture, Iwate UniversityMorioka, Japan
| | - Matsuo Uemura
- United Graduate School of Agricultural Sciences, Iwate UniversityMorioka, Japan
- Cryobiofrontier Research Center, Faculty of Agriculture, Iwate UniversityMorioka, Japan
- *Correspondence: Matsuo Uemura, Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. e-mail:
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Malinsky J, Opekarová M, Grossmann G, Tanner W. Membrane microdomains, rafts, and detergent-resistant membranes in plants and fungi. ANNUAL REVIEW OF PLANT BIOLOGY 2013; 64:501-29. [PMID: 23638827 DOI: 10.1146/annurev-arplant-050312-120103] [Citation(s) in RCA: 93] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
The existence of specialized microdomains in plasma membranes, postulated for almost 25 years, has been popularized by the concept of lipid or membrane rafts. The idea that detergent-resistant membranes are equivalent to lipid rafts, which was generally abandoned after a decade of vigorous data accumulation, contributed to intense discussions about the validity of the raft concept. The existence of membrane microdomains, meanwhile, has been verified by unequivocal independent evidence. This review summarizes the current state of research in plants and fungi with respect to common aspects of both kingdoms. In these organisms, principally immobile microdomains large enough for microscopic detection have been visualized. These microdomains are found in the context of cell-cell interactions (plant symbionts and pathogens), membrane transport, stress, and polarized growth, and the data corroborate at least three mechanisms of formation. As documented in this review, modern methods of visualization of lateral membrane compartments are also able to uncover the functional relevance of membrane microdomains.
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Affiliation(s)
- Jan Malinsky
- Institute of Experimental Medicine, Academy of Sciences of the Czech Republic, 142 20 Prague, Czech Republic.
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Wamaitha MJ, Yamamoto R, Wong HL, Kawasaki T, Kawano Y, Shimamoto K. OsRap2.6 transcription factor contributes to rice innate immunity through its interaction with Receptor for Activated Kinase-C 1 (RACK1). RICE (NEW YORK, N.Y.) 2012; 5:35. [PMID: 24280008 PMCID: PMC4883712 DOI: 10.1186/1939-8433-5-35] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2012] [Accepted: 11/06/2012] [Indexed: 05/03/2023]
Abstract
BACKGROUND The rice small GTPase OsRac1 is a molecular switch in rice innate immunity. The Receptor for Activated Kinase C-1 (RACK1) interacts with OsRac1 to suppress the growth of the rice blast fungus, Magnaporthe oryzae. RACK1 has two homologs in rice, RACK1A and RACK1B. Overexpressing RACK1A enhances resistance to the rice blast fungus. However, RACK1A downstream signals are largely unknown. RESULTS Here, we report the identification of OsRap2.6, a transcription factor that interacts with RACK1A. We found a 94% similarity between the OsRap2.6 AP2 domain and Arabidopsis Rap2.6 (AtRap2.6). Bimolecular fluorescence complementation (BiFC) assays in rice protoplasts using tagged OsRap2.6 and RACK1A with the C-terminal and N-terminal fragments of Venus (Vc/Vn) indicated that OsRap2.6 and RACK1A interacted and localized in the nucleus and the cytoplasm. Moreover, OsRap2.6 and OsMAPK3/6 interacted in the nucleus and the cytoplasm. Expression of defense genes PAL1 and PBZ1 as well as OsRap2.6 was induced after chitin treatment. Disease resistance analysis using OsRap2.6 RNAi and overexpressing (Ox) plants infected with the rice blast fungus indicated that OsRap2.6 RNAi plants were highly susceptible, whereas OsRap2.6 Ox plants had an increased resistance to the compatible blast fungus. CONCLUSIONS OsRap2.6 contributes to rice innate immunity through its interaction with RACK1A in compatible interactions.
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Affiliation(s)
- Mwathi Jane Wamaitha
- />Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192 Japan
| | - Risa Yamamoto
- />Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192 Japan
| | - Hann Ling Wong
- />Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192 Japan
- />Universiti Tunku Abdul Rahman Jalan Universiti, Bandar Barat, Kampar 31900 Malaysia
| | - Tsutomu Kawasaki
- />Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192 Japan
- />Department of Advanced Bioscience, Graduate School of Agriculture, Kinki University, 3327-204 Nakamachi, Nara, 631-8505 Japan
| | - Yoji Kawano
- />Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192 Japan
| | - Ko Shimamoto
- />Laboratory of Plant Molecular Genetics, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192 Japan
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Ke D, Fang Q, Chen C, Zhu H, Chen T, Chang X, Yuan S, Kang H, Ma L, Hong Z, Zhang Z. The small GTPase ROP6 interacts with NFR5 and is involved in nodule formation in Lotus japonicus. PLANT PHYSIOLOGY 2012; 159:131-43. [PMID: 22434040 PMCID: PMC3375957 DOI: 10.1104/pp.112.197269] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2012] [Accepted: 03/16/2012] [Indexed: 05/02/2023]
Abstract
Nod Factor Receptor5 (NFR5) is an atypical receptor-like kinase, having no activation loop in the protein kinase domain. It forms a heterodimer with NFR1 and is required for the early plant responses to Rhizobium infection. A Rho-like small GTPase from Lotus japonicus was identified as an NFR5-interacting protein. The amino acid sequence of this Rho-like GTPase is closest to the Arabidopsis (Arabidopsis thaliana) ROP6 and Medicago truncatula ROP6 and was designated as LjROP6. The interaction between Rop6 and NFR5 occurred both in vitro and in planta. No interaction between Rop6 and NFR1 was observed. Green fluorescent protein-tagged ROP6 was localized at the plasma membrane and cytoplasm. The interaction between ROP6 and NFR5 appeared to take place at the plasma membrane. The expression of the ROP6 gene could be detected in vascular tissues of Lotus roots. After inoculation with Mesorhizobium loti, elevated levels of ROP6 expression were found in the root hairs, root tips, vascular bundles of roots, nodule primordia, and young nodules. In transgenic hairy roots expressing ROP6 RNA interference constructs, Rhizobium entry into the root hairs did not appear to be affected, but infection thread growth through the root cortex were severely inhibited, resulting in the development of fewer nodules per plant. These data demonstrate a role of ROP6 as a positive regulator of infection thread formation and nodulation in L. japonicus.
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Affiliation(s)
| | | | - Chunfen Chen
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China (D.K., Q.F., C.C., H.Z., T.C., X.C., S.Y., H.K., L.M., Z.Z.); and Department of Plant, Soil, and Entomological Sciences and Program of Microbiology, Molecular Biology, and Biochemistry, University of Idaho, Moscow, Idaho 83844–2339 (Z.H.)
| | - Hui Zhu
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China (D.K., Q.F., C.C., H.Z., T.C., X.C., S.Y., H.K., L.M., Z.Z.); and Department of Plant, Soil, and Entomological Sciences and Program of Microbiology, Molecular Biology, and Biochemistry, University of Idaho, Moscow, Idaho 83844–2339 (Z.H.)
| | - Tao Chen
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China (D.K., Q.F., C.C., H.Z., T.C., X.C., S.Y., H.K., L.M., Z.Z.); and Department of Plant, Soil, and Entomological Sciences and Program of Microbiology, Molecular Biology, and Biochemistry, University of Idaho, Moscow, Idaho 83844–2339 (Z.H.)
| | - Xiaojun Chang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China (D.K., Q.F., C.C., H.Z., T.C., X.C., S.Y., H.K., L.M., Z.Z.); and Department of Plant, Soil, and Entomological Sciences and Program of Microbiology, Molecular Biology, and Biochemistry, University of Idaho, Moscow, Idaho 83844–2339 (Z.H.)
| | - Songli Yuan
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China (D.K., Q.F., C.C., H.Z., T.C., X.C., S.Y., H.K., L.M., Z.Z.); and Department of Plant, Soil, and Entomological Sciences and Program of Microbiology, Molecular Biology, and Biochemistry, University of Idaho, Moscow, Idaho 83844–2339 (Z.H.)
| | - Heng Kang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China (D.K., Q.F., C.C., H.Z., T.C., X.C., S.Y., H.K., L.M., Z.Z.); and Department of Plant, Soil, and Entomological Sciences and Program of Microbiology, Molecular Biology, and Biochemistry, University of Idaho, Moscow, Idaho 83844–2339 (Z.H.)
| | | | - Zonglie Hong
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China (D.K., Q.F., C.C., H.Z., T.C., X.C., S.Y., H.K., L.M., Z.Z.); and Department of Plant, Soil, and Entomological Sciences and Program of Microbiology, Molecular Biology, and Biochemistry, University of Idaho, Moscow, Idaho 83844–2339 (Z.H.)
| | - Zhongming Zhang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, China (D.K., Q.F., C.C., H.Z., T.C., X.C., S.Y., H.K., L.M., Z.Z.); and Department of Plant, Soil, and Entomological Sciences and Program of Microbiology, Molecular Biology, and Biochemistry, University of Idaho, Moscow, Idaho 83844–2339 (Z.H.)
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Cacas JL, Furt F, Le Guédard M, Schmitter JM, Buré C, Gerbeau-Pissot P, Moreau P, Bessoule JJ, Simon-Plas F, Mongrand S. Lipids of plant membrane rafts. Prog Lipid Res 2012; 51:272-99. [PMID: 22554527 DOI: 10.1016/j.plipres.2012.04.001] [Citation(s) in RCA: 81] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Lipids tend to organize in mono or bilayer phases in a hydrophilic environment. While they have long been thought to be incapable of coherent lateral segregation, it is now clear that spontaneous assembly of these compounds can confer microdomain organization beyond spontaneous fluidity. Membrane raft microdomains have the ability to influence spatiotemporal organization of protein complexes, thereby allowing regulation of cellular processes. In this review, we aim at summarizing briefly: (i) the history of raft discovery in animals and plants, (ii) the main findings about structural and signalling plant lipids involved in raft segregation, (iii) imaging of plant membrane domains, and their biochemical purification through detergent-insoluble membranes, as well as the existing debate on the topic. We also discuss the potential involvement of rafts in the regulation of plant physiological processes, and further discuss the prospects of future research into plant membrane rafts.
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Affiliation(s)
- Jean-Luc Cacas
- Laboratoire de Biogenèse Membranaire, UMR 5200 CNRS, Université de Bordeaux, 146 Rue Léo Saignat, 33076 Bordeaux, France
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Qi Y, Katagiri F. Membrane microdomain may be a platform for immune signaling. PLANT SIGNALING & BEHAVIOR 2012; 7:454-6. [PMID: 22499178 PMCID: PMC3419031 DOI: 10.4161/psb.19398] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Arabidopsis RPS2 is a typical disease resistance (R) protein with nucleotide-binding leucine-rich repeats (NB-LRR). Previously, we reported that RPS2 is physically associated with some Arabidopsis hypersensitive induced reaction (AtHIR) proteins, which are enriched in membrane microdomains. Biochemical and genetic analyses suggested that members of the AtHIR gene family have a function in RPS2-mediated immune signaling. Here, we provide evidence that the pattern recognition receptor (PRR) FLS2 is also physically associated with AtHIR2 in a N. benthamiana transient expression system. We thus speculate that PM microdomains provide a platform for both types of immune receptors, R proteins and PRRs, and that the activation of the receptors is facilitated by AtHIR proteins.
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Affiliation(s)
- Yiping Qi
- Department of Plant Biology; Microbial and Plant Genomics Institute; University of Minnesota; St. Paul, MN USA
| | - Fumiaki Katagiri
- Department of Plant Biology; Microbial and Plant Genomics Institute; University of Minnesota; St. Paul, MN USA
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Takahashi D, Kawamura Y, Yamashita T, Uemura M. Detergent-resistant plasma membrane proteome in oat and rye: similarities and dissimilarities between two monocotyledonous plants. J Proteome Res 2012; 11:1654-65. [PMID: 22191623 DOI: 10.1021/pr200849v] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The plasma membrane (PM) is involved in important cellular processes that determine the growth, development, differentiation, and environmental signal responses of plant cells. Some of these dynamic reactions occur in specific domains in the PM. In this study, we performed comparable nano-LC-MS/MS-based large-scale proteomic analysis of detergent-resistant membrane (DRM) fractions prepared from the PM of oat and rye. A number of proteins showed differential accumulation between the PM and DRM, and some proteins were only found in the DRM. Numerous proteins were identified as DRM proteins in oat (219 proteins) and rye (213 proteins), of which about half were identified only in the DRM. The DRM proteins were largely common to those found in dicotyledonous plants (Arabidopsis and tobacco), which suggests common functions associated with the DRM in plants. Combination of semiquantitative proteomic analysis and prediction of post-translational protein modification sites revealed differences in several proteins associated with the DRM in oat and rye. It is concluded that protein distribution in the DRM is unique from that in the PM, partly because of the physicochemical properties of the proteins, and the unique distribution of these proteins may define the functions of the specific domains in the PM in various physiological processes in plant cells.
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Affiliation(s)
- Daisuke Takahashi
- Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University , 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan
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Urbanus SL, Ott T. Plasticity of plasma membrane compartmentalization during plant immune responses. FRONTIERS IN PLANT SCIENCE 2012; 3:181. [PMID: 22876256 PMCID: PMC3411101 DOI: 10.3389/fpls.2012.00181] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2012] [Accepted: 07/23/2012] [Indexed: 05/10/2023]
Abstract
Plasma membranes require high levels of plasticity to modulate the perception and transduction of extracellular and intracellular signals. Dynamic lateral assembly of protein complexes combined with an independent compositional lipid patterning in both membrane leaflets provide cells the opportunity to decorate this interface with specific proteins in an organized but dynamic manner. Such ability to dynamically reorganize the protein content of the plasma membrane is essential for the regulation of processes such as polarity of transport, development, and microbial infection. While the plant cell wall represents the first physical and mostly unspecific barrier for invading microbes, the plasma membrane is at the forefront of microbial recognition and initiation of defense responses. Accumulating evidence indicating dynamic compartmentalization of plasma membranes in response to environmental cues has increased the interest in the compositional heterogeneity of this bilayer. Here, we elucidate the recruitment of specific proteins into defined membrane structures that ensure functional compartmentalization of the bilayer during infection processes.
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Affiliation(s)
| | - Thomas Ott
- *Correspondence: Thomas Ott, Institute of Genetics, University of Munich, Großhaderner Str. 2-4, 82152 Martinsried, Germany. e-mail:
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50
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Peng L, Fukao Y, Fujiwara M, Shikanai T. Multistep assembly of chloroplast NADH dehydrogenase-like subcomplex A requires several nucleus-encoded proteins, including CRR41 and CRR42, in Arabidopsis. THE PLANT CELL 2012; 24:202-14. [PMID: 22274627 PMCID: PMC3289569 DOI: 10.1105/tpc.111.090597] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/08/2023]
Abstract
Chloroplast NADH dehydrogenase-like complex (NDH) mediates photosystem I cyclic electron transport and chlororespiration in thylakoids. Recently, substantial progress has been made in understanding the structure of NDH, but our knowledge of its assembly has been limited. In this study, a series of interactive proteomic analyses identified several stroma-localized factors required for the assembly of a stroma-protruding arm of NDH (subcomplex A). In addition to further characterization of the previously identified CHLORORESPIRATORY REDUCTION1 (CRR1), CRR6, and CRR7, two novel stromal proteins, CRR41 and CRR42, were discovered. Arabidopsis thaliana mutants lacking these proteins are specifically defective in the accumulation of subcomplex A. A total of 10 mutants lacking subcomplex A, including crr27/cpn60β4, which is specifically defective in the folding of NdhH, and four mutants lacking NdhL-NdhO subunits, were extensively characterized. We propose a model for subcomplex A assembly: CRR41, NdhO, and native NdhH, as well as unknown factors, are first assembled to form an NDH subcomplex A assembly intermediate (NAI500). Subsequently, NdhJ, NdhM, NdhK, and NdhI are incorporated into NAI500 to form NAI400. CRR1, CRR6, and CRR42 are involved in this process. CRR7 is likely to be involved in the final step, in which the fully assembled NAI, including NdhN, is inserted into thylakoids.
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Affiliation(s)
- Lianwei Peng
- Department of Botany, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
- Key Laboratory of Photobiology, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Yoichiro Fukao
- Plant Global Educational Project, Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama, Ikoma, Nara 630-0101, Japan
| | - Masayuki Fujiwara
- Plant Global Educational Project, Graduate School of Biological Sciences, Nara Institute of Science and Technology, Takayama, Ikoma, Nara 630-0101, Japan
| | - Toshiharu Shikanai
- Department of Botany, Graduate School of Science, Kyoto University, Sakyo-ku, Kyoto 606-8502, Japan
- Address correspondence to
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