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Zhu Y, Zong Y, Wang X, Gong D, Zhang X, Zhang F, Prusky D, Bi Y. Regulation of sucrose metabolism, sugar transport and pentose phosphate pathway by PacC in apple fruit colonized by Penicillium expansum. Food Chem 2024; 461:140863. [PMID: 39153373 DOI: 10.1016/j.foodchem.2024.140863] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2024] [Revised: 07/27/2024] [Accepted: 08/11/2024] [Indexed: 08/19/2024]
Abstract
A critical transcription factor, PacC, modulates the expression of fungal pH signaling. Although PacC-mediated environmental pH has been reported to regulate the growth and pathogenicity of postharvest pathogens, the involvement of PacC in sucrose metabolism, sugar transport, and the pentose phosphate pathway (PPP) in different zones of decayed fruit remains unclear. Our work showed that the inoculation with a PePacC deletion strain of Penicillium expansum (ΔPePacC) accelerated sucrose catabolism and glucose and fructose accumulation in different zones of apple fruit. This was attributed to an increase in sucrose metabolism enzyme activities and up-regulation of the sugar transporter protein-related gene expression. Moreover, ΔPePacC inoculation increased the PPP-related enzyme activities and the levels of nicotinamide adenine dinucleotide phosphate (NADPH) and NADP+. In conclusion, PacC modulates sucrose metabolism, sugar transport, and the PPP in apple fruit by mediating dynamic changes in environmental pH, thereby enhancing fruit disease resistance.
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Affiliation(s)
- Yatong Zhu
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou 730070, China
| | - Yuanyuan Zong
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou 730070, China
| | - Xuexue Wang
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou 730070, China
| | - Di Gong
- School of Public Health, Lanzhou University, Lanzhou 730000, China
| | - Xuemei Zhang
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou 730070, China
| | - Feng Zhang
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou 730070, China
| | - Dov Prusky
- Department of Postharvest and Food Science, Agricultural Research Organization, the Volcani Center, RishonLeZion 7505101, Israel
| | - Yang Bi
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou 730070, China.
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Astacio JD, Melgarejo P, De Cal A, Espeso EA. Monilinia fructicola genes involved in the cell wall-degrading process in early nectarine infection. Int J Food Microbiol 2024; 419:110750. [PMID: 38776709 DOI: 10.1016/j.ijfoodmicro.2024.110750] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 05/14/2024] [Accepted: 05/16/2024] [Indexed: 05/25/2024]
Abstract
Brown rot symptoms may be linked to alterations in the gene expression pattern of genes associated with cell wall degradation. In this study, we identify key carbohydrate-active enzymes (CAZymes) involved in cell wall degradation by Monilinia fructicola, including pme2 and pme3 (pectin methylesterases), cut1 (cutinase) and nep2 (necrosis-inducing factor). The expression of these genes is significantly modulated by red and blue light during early nectarine infection. The polygalacturonase gene pg1 and the cellulase gene cel1 also exhibit photoinduction albeit to a lesser extent. Red and blue light cause an acceleration in the initial stages of brown rot development caused by M. fructicola on nectarines. Disease symptoms like tissue maceration were evident after an incubation period of 24 h followed by 14 h of light exposition, in contrast to the usual incubation period of 48 to 72 h. Furthermore, the culture media exerts an impact on gene regulation, suggesting a complex interplay between light and nutrient signalling pathways in M. fructicola. In addition, we observe that red light promotes colony growth on a 12 h photoperiod and consistently reduces conidiation. In contrast, blue light hampers growth rate on both the 12 h and the 8 h photoperiod but only diminishes conidiation on the 12 h photoperiod. These findings enhance our comprehension of genes associated with cell wall degradation and the environmental factors influencing brown rot development.
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Affiliation(s)
- Juan Diego Astacio
- Grupo de Hongos Fitopatógenos, Departamento de Protección Vegetal, Centro Nacional INIA-CSIC, 28040 Madrid, Spain; Programa Biotecnología y Recursos Genéticos de Plantas y Microorganismos Asociados, ETSIA, Universidad Politécnica de Madrid, 28040 Madrid, Spain
| | - Paloma Melgarejo
- Grupo de Hongos Fitopatógenos, Departamento de Protección Vegetal, Centro Nacional INIA-CSIC, 28040 Madrid, Spain
| | - Antonieta De Cal
- Grupo de Hongos Fitopatógenos, Departamento de Protección Vegetal, Centro Nacional INIA-CSIC, 28040 Madrid, Spain.
| | - Eduardo Antonio Espeso
- Laboratorio de Biología Celular de Aspergillus, Departamento de Biología Celular y Molecular, Centro Investigaciones Biológicas Margarita Salas, CSIC (CIB-CSIC), 28040 Madrid, Spain
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Jeyaraj A, Elango T, Chen X, Zhuang J, Wang Y, Li X. Advances in understanding the mechanism of resistance to anthracnose and induced defence response in tea plants. MOLECULAR PLANT PATHOLOGY 2023; 24:1330-1346. [PMID: 37522519 PMCID: PMC10502868 DOI: 10.1111/mpp.13354] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2023] [Revised: 05/03/2023] [Accepted: 05/04/2023] [Indexed: 08/01/2023]
Abstract
The tea plant (Camellia sinensis) is susceptible to anthracnose disease that causes considerable crop loss and affects the yield and quality of tea. Multiple Colletotrichum spp. are the causative agents of this disease, which spreads quickly in warm and humid climates. During plant-pathogen interactions, resistant cultivars defend themselves against the hemibiotrophic pathogen by activating defence signalling pathways, whereas the pathogen suppresses plant defences in susceptible varieties. Various fungicides have been used to control this disease on susceptible plants, but these fungicide residues are dangerous to human health and cause fungicide resistance in pathogens. The problem-solving approaches to date are the development of resistant cultivars and ecofriendly biocontrol strategies to achieve sustainable tea cultivation and production. Understanding the infection stages of Colletotrichum, tea plant resistance mechanisms, and induced plant defence against Colletotrichum is essential to support sustainable disease management practices in the field. This review therefore summarizes the current knowledge of the identified causative agent of tea plant anthracnose, the infection strategies and pathogenicity of C. gloeosporioides, anthracnose disease resistance mechanisms, and the caffeine-induced defence response against Colletotrichum infection. The information reported in this review will advance our understanding of host-pathogen interactions and eventually help us to develop new disease control strategies.
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Affiliation(s)
- Anburaj Jeyaraj
- College of HorticultureNanjing Agricultural UniversityNanjingChina
| | | | - Xuan Chen
- College of HorticultureNanjing Agricultural UniversityNanjingChina
| | - Jing Zhuang
- College of HorticultureNanjing Agricultural UniversityNanjingChina
| | - Yuhua Wang
- College of HorticultureNanjing Agricultural UniversityNanjingChina
| | - Xinghui Li
- College of HorticultureNanjing Agricultural UniversityNanjingChina
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Dofuor AK, Quartey NKA, Osabutey AF, Antwi-Agyakwa AK, Asante K, Boateng BO, Ablormeti FK, Lutuf H, Osei-Owusu J, Osei JHN, Ekloh W, Loh SK, Honger JO, Aidoo OF, Ninsin KD. Mango anthracnose disease: the current situation and direction for future research. Front Microbiol 2023; 14:1168203. [PMID: 37692388 PMCID: PMC10484599 DOI: 10.3389/fmicb.2023.1168203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Accepted: 08/03/2023] [Indexed: 09/12/2023] Open
Abstract
Mango anthracnose disease (MAD) is a destructive disease of mangoes, with estimated yield losses of up to 100% in unmanaged plantations. Several strains that constitute Colletotrichum complexes are implicated in MAD worldwide. All mangoes grown for commercial purposes are susceptible, and a resistant cultivar for all strains is not presently available on the market. The infection can widely spread before being detected since the disease is invincible until after a protracted latent period. The detection of multiple strains of the pathogen in Mexico, Brazil, and China has prompted a significant increase in research on the disease. Synthetic pesticide application is the primary management technique used to manage the disease. However, newly observed declines in anthracnose susceptibility to many fungicides highlight the need for more environmentally friendly approaches. Recent progress in understanding the host range, molecular and phenotypic characterization, and susceptibility of the disease in several mango cultivars is discussed in this review. It provides updates on the mode of transmission, infection biology and contemporary management strategies. We suggest an integrated and ecologically sound approach to managing MAD.
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Affiliation(s)
- Aboagye Kwarteng Dofuor
- Department of Biological Sciences, School of Natural and Environmental Sciences, University of Environment and Sustainable Development, Somanya, Ghana
| | - Naa Kwarley-Aba Quartey
- Department of Food Science and Technology, Faculty of Biosciences, College of Science, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana
| | | | | | - Kwasi Asante
- Coconut Research Program, Oil Palm Research Institute, Council for Scientific and Industrial Research, Sekondi-Takoradi, Ghana
| | - Belinda Obenewa Boateng
- Coconut Research Program, Oil Palm Research Institute, Council for Scientific and Industrial Research, Sekondi-Takoradi, Ghana
| | - Fred Kormla Ablormeti
- Coconut Research Program, Oil Palm Research Institute, Council for Scientific and Industrial Research, Sekondi-Takoradi, Ghana
| | - Hanif Lutuf
- Crop Protection Division, Oil Palm Research Institute, Council for Scientific and Industrial Research, Kade, Ghana
| | - Jonathan Osei-Owusu
- Department of Physical and Mathematical Sciences, School of Natural and Environmental Sciences, University of Environment and Sustainable Development, Somanya, Ghana
| | - Joseph Harold Nyarko Osei
- Department of Parasitology, Noguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, Accra, Ghana
| | - William Ekloh
- Department of Biochemistry, School of Biological Sciences, College of Agriculture and Natural Sciences, University of Cape Coast, Cape Coast, Ghana
| | - Seyram Kofi Loh
- Department of Built Environment, School of Sustainable Development, University of Environment and Sustainable Development, Somanya, Ghana
| | - Joseph Okani Honger
- Soil and Irrigation Research Centre, College of Basic and Applied Sciences, School of Agriculture, University of Ghana, Accra, Ghana
| | - Owusu Fordjour Aidoo
- Department of Biological Sciences, School of Natural and Environmental Sciences, University of Environment and Sustainable Development, Somanya, Ghana
| | - Kodwo Dadzie Ninsin
- Department of Biological Sciences, School of Natural and Environmental Sciences, University of Environment and Sustainable Development, Somanya, Ghana
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Shi WJ, Zhao R, Zhu JQ, Wan XH, Wang LB, Li H, Qin S. Complete genome analysis of pathogenic Metschnikowia bicuspidata strain MQ2101 isolated from diseased ridgetail white prawn, Exopalaemon carinicauda. BMC Microbiol 2023; 23:120. [PMID: 37120526 PMCID: PMC10148492 DOI: 10.1186/s12866-023-02865-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 04/18/2023] [Indexed: 05/01/2023] Open
Abstract
BACKGROUND Metschnikowia bicuspidata is a pathogenic yesst that can cause disease in many different economic aquatic animal species. In recent years, there was a new disease outbreak in ridgetail white prawn (Exopalaemon carinicauda) in coastal areas of Jiangsu Province China that was referred to as zombie disease by local farmers. The pathogen was first isolated and identified as M. bicuspidata. Although the pathogenicity and pathogenesis of this pathogen in other animals have been reported in some previous studies, research on its molecular mechanisms is still very limited. Therefore, a genome-wide study is necessary to better understand the physiological and pathogenic mechanisms of M. bicuspidata. RESULT In this study, we obtained a pathogenic strain, MQ2101, of M. bicuspidata from diseased E. carinicauda and sequenced its whole genome. The size of the whole genome was 15.98 Mb, and it was assembled into 5 scaffolds. The genome contained 3934 coding genes, among which 3899 genes with biological functions were annotated in multiple underlying databases. In KOG database, 2627 genes were annotated, which were categorized into 25 classes including general function prediction only, posttranslational modification, protein turnover, chaperones, and signal transduction mechanisms. In KEGG database, 2493 genes were annotated, which were categorized into five classes, including cellular processes, environmental information processing, genetic information processing, metabolism and organismal systems. In GO database, 2893 genes were annotated, which were mainly classified in cell, cell part, cellular processes and metabolic processes. There were 1055 genes annotated in the PHI database, accounting for 26.81% of the total genome, among which 5 genes were directly related to pathogenicity (identity ≥ 50%), including hsp90, PacC, and PHO84. There were also some genes related to the activity of the yeast itself that could be targeted by antiyeast drugs. Analysis based on the DFVF database showed that strain MQ2101 contained 235 potential virulence genes. BLAST searches in the CAZy database showed that strain MQ2101 may have a more complex carbohydrate metabolism system than other yeasts of the same family. In addition, two gene clusters and 168 putative secretory proteins were predicted in strain MQ2101, and functional analysis showed that some of the secretory proteins may be directly involved in the pathogenesis of the strain. Gene family analysis with five other yeasts revealed that strain MQ2101 has 245 unique gene families, including 274 genes involved in pathogenicity that could serve as potential targets. CONCLUSION Genome-wide analysis elucidated the pathogenicity-associated genes of M. bicuspidate while also revealing a complex metabolic mechanism and providing putative targets of action for the development of antiyeast drugs for this pathogen. The obtained whole-genome sequencing data provide an important theoretical basis for transcriptomic, proteomic and metabolic studies of M. bicuspidata and lay a foundation for defining its specific mechanism of host infestation.
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Affiliation(s)
- Wen-Jun Shi
- Key Laboratory of Biology and Bioresource Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, No. 17, Chunhui Road, Yantai, Shandong Province, 264003, People's Republic of China
- Institute of Oceanology & Marine Fisheries, No. 31, Jiaoyu Road, Nantong, Jiangsu, 226007, People's Republic of China
- University of Chinese Academy of Sciences, Beijing, 100049, People's Republic of China
| | - Ran Zhao
- Institute of Oceanology & Marine Fisheries, No. 31, Jiaoyu Road, Nantong, Jiangsu, 226007, People's Republic of China
- National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai, 201306, People's Republic of China
| | - Jian-Qiang Zhu
- Institute of Oceanology & Marine Fisheries, No. 31, Jiaoyu Road, Nantong, Jiangsu, 226007, People's Republic of China
- National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai, 201306, People's Republic of China
| | - Xi-He Wan
- Institute of Oceanology & Marine Fisheries, No. 31, Jiaoyu Road, Nantong, Jiangsu, 226007, People's Republic of China.
| | - Li-Bao Wang
- Institute of Oceanology & Marine Fisheries, No. 31, Jiaoyu Road, Nantong, Jiangsu, 226007, People's Republic of China
| | - Hui Li
- Institute of Oceanology & Marine Fisheries, No. 31, Jiaoyu Road, Nantong, Jiangsu, 226007, People's Republic of China
| | - Song Qin
- Key Laboratory of Biology and Bioresource Utilization, Yantai Institute of Coastal Zone Research, Chinese Academy of Sciences, No. 17, Chunhui Road, Yantai, Shandong Province, 264003, People's Republic of China.
- University of Chinese Academy of Sciences, Beijing, 100049, People's Republic of China.
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Rapid and simple colorimetric detection of quiescent Colletotrichum in harvested fruit using reverse transcriptional loop-mediated isothermal amplification (RT-LAMP) technology. Talanta 2023; 255:124251. [PMID: 36630787 DOI: 10.1016/j.talanta.2023.124251] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Revised: 12/27/2022] [Accepted: 01/02/2023] [Indexed: 01/07/2023]
Abstract
Anthracnose, caused by the fungus Colletotrichum gloeosporioides, is one of the major causes of postharvest decay of fruits and vegetables. Detection of the pathogen at an early stage of infection is crucial to developing a disease management strategy. In this work, a loop-mediated isothermal amplification (LAMP) assay was developed for the rapid detection of C. gloeosporioides targeting the transcript enoyl-CoA hydratase (ECH) that significantly upregulates only during C. gloeosporioides quiescent stage. The assay enabled a naked-eye detection of C. gloeosporioides RNA within 23 min based on a color change of LAMP products from pink to yellow. The detection limit of the LAMP assay was 1 pg of total RNA extracted from fruit peel in a 25 μL reaction. Positive results were obtained only in samples carrying the ECH gene, whereas no cross-reaction was observed for a different quiescent marker (histone deacetylase (HDAC)) or an appressorium marker (scytalone dehydratase, (SD)), indicating the high specificity of the method. Hence, the results indicate that the developed LAMP assay is a rapid, highly sensitive, and specific tool for the early detection of quiescent C. gloeosporioides and could be employed to manage postharvest diseases.
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Wang Y, Xu WT, Lu RS, Chen M, Liu J, Sun XQ, Zhang YM. Genome Sequence Resource for Colletotrichum gloeosporioides, an Important Pathogenic Fungus Causing Anthracnose of Dioscorea alata. PLANT DISEASE 2023; 107:893-895. [PMID: 36265140 DOI: 10.1094/pdis-03-22-0567-a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Anthracnose disease is one of the most important diseases of Dioscorea alata and many other food yams, which is caused by Colletotrichum gloeosporioides fungus from the Glomerellaceae family of the Sordariomycetes class. In the present study, a C. gloeosporioides starin named CgDa01 was isolated from D. alata, and its genome was sequenced based on Oxford Nanopore technology (ONT) and the Illumina sequencing platform. The high-quality genome of CgDa01 was assembled with a 62.78 Mb genome size and 15,845 predicted protein-coding genes. The proteins of predicted genes were annotated using multiple public databases, including the nonredundant protein database, the InterProScan databases, and Kyoto Encyclopedia of Genes and Genomes. Among the annotated protein-coding genes, 55 were predicted as potential virulence genes by the fungal virulence factor database. The C. gloeosporioides CgDa01 genome assembly described in this study can serve as a resource for better understanding the pathogenic mechanism of C. gloeosporioides on yam hosts.
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Affiliation(s)
- Yue Wang
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Wei-Teng Xu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Rui-Sen Lu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Min Chen
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Jia Liu
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Xiao-Qin Sun
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
| | - Yan-Mei Zhang
- Institute of Botany, Jiangsu Province and Chinese Academy of Sciences, Nanjing, China
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Wojciechowski JW, Tekoglu E, Gąsior-Głogowska M, Coustou V, Szulc N, Szefczyk M, Kopaczyńska M, Saupe SJ, Dyrka W. Exploring a diverse world of effector domains and amyloid signaling motifs in fungal NLR proteins. PLoS Comput Biol 2022; 18:e1010787. [PMID: 36542665 PMCID: PMC9815663 DOI: 10.1371/journal.pcbi.1010787] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 01/05/2023] [Accepted: 12/02/2022] [Indexed: 12/24/2022] Open
Abstract
NLR proteins are intracellular receptors constituting a conserved component of the innate immune system of cellular organisms. In fungi, NLRs are characterized by high diversity of architectures and presence of amyloid signaling. Here, we explore the diverse world of effector and signaling domains of fungal NLRs using state-of-the-art bioinformatic methods including MMseqs2 for fast clustering, probabilistic context-free grammars for sequence analysis, and AlphaFold2 deep neural networks for structure prediction. In addition to substantially improving the overall annotation, especially in basidiomycetes, the study identifies novel domains and reveals the structural similarity of MLKL-related HeLo- and Goodbye-like domains forming the most abundant superfamily of fungal NLR effectors. Moreover, compared to previous studies, we found several times more amyloid motif instances, including novel families, and validated aggregating and prion-forming properties of the most abundant of them in vitro and in vivo. Also, through an extensive in silico search, the NLR-associated amyloid signaling was identified in basidiomycetes. The emerging picture highlights similarities and differences in the NLR architectures and amyloid signaling in ascomycetes, basidiomycetes and other branches of life.
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Affiliation(s)
- Jakub W. Wojciechowski
- Katedra Inżynierii Biomedycznej, Wydział Podstawowych Problemów Techniki, Politechnika Wrocławska, Wrocław, Poland
| | - Emirhan Tekoglu
- Biyomühendislik Bölümü, Yıldız Teknik Üniversitesi, İstanbul, Turkey
- Wydział Chemiczny, Politechnika Wrocławska, Poland
| | - Marlena Gąsior-Głogowska
- Katedra Inżynierii Biomedycznej, Wydział Podstawowych Problemów Techniki, Politechnika Wrocławska, Wrocław, Poland
| | - Virginie Coustou
- Institut de Biochimie et de Génétique Cellulaire, UMR 5095 CNRS, Université de Bordeaux, Bordeaux, France
| | - Natalia Szulc
- Katedra Inżynierii Biomedycznej, Wydział Podstawowych Problemów Techniki, Politechnika Wrocławska, Wrocław, Poland
| | - Monika Szefczyk
- Katedra Chemii Bioorganicznej, Wydział Chemiczny, Politechnika Wrocławska, Wrocław, Poland
| | - Marta Kopaczyńska
- Katedra Inżynierii Biomedycznej, Wydział Podstawowych Problemów Techniki, Politechnika Wrocławska, Wrocław, Poland
| | - Sven J. Saupe
- Institut de Biochimie et de Génétique Cellulaire, UMR 5095 CNRS, Université de Bordeaux, Bordeaux, France
- * E-mail: (SJS); (WD)
| | - Witold Dyrka
- Katedra Inżynierii Biomedycznej, Wydział Podstawowych Problemów Techniki, Politechnika Wrocławska, Wrocław, Poland
- * E-mail: (SJS); (WD)
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The AbcCl1 transporter of Colletotrichum lindemuthianum acts as a virulence factor involved in fungal detoxification during common bean (Phaseolus vulgaris) infection. Braz J Microbiol 2022; 53:1121-1132. [PMID: 35821347 DOI: 10.1007/s42770-022-00787-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Accepted: 06/21/2022] [Indexed: 11/02/2022] Open
Abstract
Anthracnose, caused by Colletotrichum lindemuthianum, is a disease affecting the common bean plant, Phaseolus vulgaris. To establish infection, the phytopathogen must survive the toxic compounds (phytoanticipins and phytoalexins) that are produced by the plant as a defense mechanism. To study the detoxification and efflux mechanisms in C. lindemuthianum, the abcCl1 gene, which encodes an ABC transporter, was analyzed. The abcCl1 gene (4558 pb) was predicted to encode a 1450-amino acid protein. Structural analysis of 11 genome sequences from Colletotrichum spp. showed that the number of ABC transporters varied from 34 to 64. AbcCl1 was classified in the ABC-G family of transporters, and it appears to be orthologs to ABC1 from Magnaporthe grisea and FcABC1 from Fusarium culmorum, which are involved in pleiotropic drug resistance. A abcT3 (ΔabcCl1) strain showed reduction on aggressivity when inoculated on bean leaves that presented diminishing anthracnose symptoms, which suggests the important role of AbcCl1 as a virulence factor and in fungal resistance to host compounds. The expression of abcCl1 increased in response to different toxic compounds, such as eugenol, hygromycin, and pisatin phytoalexin. Together, these results suggest that AbcCl1 is involved in fungal resistance to the toxic compounds produced by plants or antagonistic microorganisms.
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Zhang YZ, Li B, Pan YT, Fang YL, Li DW, Huang L. Protein Phosphatase CgPpz1 Regulates Potassium Uptake, Stress Responses, and Plant Infection in Colletotrichum gloeosporioides. PHYTOPATHOLOGY 2022; 112:820-829. [PMID: 34689611 DOI: 10.1094/phyto-02-21-0051-r] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Protein phosphatases play important roles in the regulation of various cellular processes in eukaryotes. The ascomycete Colletotrichum gloeosporioides is a causal agent of anthracnose disease on some important crops and trees. In this study, CgPPZ1, a protein phosphate gene and a homolog of yeast PPZ1, was identified in C. gloeosporioides. Targeted gene deletion showed that CgPpz1 was important for vegetative growth and asexual development, conidial germination, and plant infection. Cytological examinations revealed that CgPpz1 was localized to the cytoplasm. The ΔCgppz1 mutant was hypersensitive to osmotic stresses, cell wall stressors, and oxidative stressors. Taken together, our results indicated that CgPpz1 plays an important role in the fungal development and virulence of C. gloeosporioides and the multiple stress responses generated.
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Affiliation(s)
- Yun-Zhao Zhang
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
| | - Bing Li
- School of Agricultural Sciences, Zhengzhou University, Zhengzhou, Henan 450001, China
| | - Yu-Ting Pan
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
| | - Yu-Lan Fang
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
| | - De-Wei Li
- The Connecticut Agricultural Experiment Station Valley Laboratory, Windsor, CT 06095, U.S.A
| | - Lin Huang
- Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
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Chen Y, Zhang Z, Tian S, Li B. Application of -omic technologies in postharvest pathology: Recent advances and perspectives. Curr Opin Food Sci 2022. [DOI: 10.1016/j.cofs.2022.100820] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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12
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Wang B, Han Z, Gong D, Xu X, Li Y, Sionov E, Prusky D, Bi Y, Zong Y. The pH signalling transcription factor PacC modulate growth, development, stress response and pathogenicity of Trichothecium roseum. Environ Microbiol 2022; 24:1608-1621. [PMID: 35199434 DOI: 10.1111/1462-2920.15943] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Revised: 02/14/2022] [Accepted: 02/14/2022] [Indexed: 11/27/2022]
Abstract
pH is one of the important environmental factors that affect the growth, development and pathogenicity of postharvest pathogen. The transcription factor PacC dominates the pH signal pathway. PacC in Trichothecium roseum showed three typical conserved zinc finger domains and closest homology to Fusarium graminearum. T. roseum increased the environmental pH both in vitro and in vivo. Expression patterns of TrpacC under different pH showed that at increasing pH from 3 to 5, the wild-type (WT) strain induced the expression of TrPacC in parallel to increased fungal growth; however, TrPacC expression decline at higer pH than 5, while fungal growth continued to increase. Development of a ΔTrPacC mutant down-regulated the expression of TrbrlA, TrabaA and TrwetA, reduced sporulation and delayed spore germination, resulting in smaller spores and sparse hyphae. ΔTrPacC mutant was sensitive to ionic stress, oxidative stress and cell wall integrity stress compared to the WT strain, especially the ionic stress. In addition, ∆TrPacC mutant showed reduced pathogenicity to muskmelon and tomato fruits. Taken together, T. roseum is an alkalinizing fungus, and the acidic environment could induce TrPacC expression. TrPacC positively regulates fungal growth and development as well as pathogenicity showing effect on fungal response to different stresses.
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Affiliation(s)
- Bin Wang
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Zhanhong Han
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Di Gong
- Deparment of Food Science, Agricultural Research Organization, Volcani Center, Rishon LeZion, Israel
| | - Xiaobin Xu
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Yongcai Li
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Edward Sionov
- Deparment of Food Science, Agricultural Research Organization, Volcani Center, Rishon LeZion, Israel
| | - Dov Prusky
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, Rishon LeZion, Israel
| | - Yang Bi
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
| | - Yuanyuan Zong
- College of Food Science and Engineering, Gansu Agricultural University, Lanzhou, China
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13
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Wang J, Yu X, Ai C, Gao R. Genome Sequence Resource of the Causal Agent of Persimmon Anthracnose, Colletotrichum horii Strain SD010 from China. PLANT DISEASE 2022; 106:730-733. [PMID: 34661446 DOI: 10.1094/pdis-05-21-1049-a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Colletotrichum horii is a main causal agent of persimmon (Diospyros kaki) anthracnose and is distributed widely in persimmon-producing areas of the world. Here, we report the first high-quality draft genome sequence of C. horii strain SD010. This will provide a reference for understanding adaptive evolution of genome structure, genes, and population diversity among members of the C. gloeosporioides species complex, and also help in understanding the mechanisms of host-pathogen interactions and improve management strategies of anthracnose.
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Affiliation(s)
- Jie Wang
- Shandong Institute of Pomology, Taian, 271000, China
| | - Xianmei Yu
- Shandong Institute of Pomology, Taian, 271000, China
| | - Chengxiang Ai
- Shandong Institute of Pomology, Taian, 271000, China
| | - Rui Gao
- Shandong Institute of Pomology, Taian, 271000, China
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14
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Chaudhary A, Singh D. In-silico analysis of the regulatory region of effector protein genes in Verticillium dahliae. GENE REPORTS 2022. [DOI: 10.1016/j.genrep.2022.101533] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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15
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Molecular Characterization, Pathogenicity and Biological Characterization of Colletotrichum Species Associated with Anthracnose of Camellia yuhsienensis Hu in China. FORESTS 2021. [DOI: 10.3390/f12121712] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Camellia yuhsienensis Hu, a species of tea oil tree with resistance to anthracnose, is widely used to breed disease-resistant Camellia varieties. In 2019, anthracnose symptoms were observed on Ca. yuhsienensis for the first time. However, the species and biological characteristics of Colletotrichum spp. isolated from Ca. yuhsienensis (YX-Colletotrichum spp.) have not been elucidated. In this study, five isolates (YX2-5-2, 2YX-3-1, 2YX-5-1, 2YX-8-1-1 and 2YX-8-1-2), which were consistent with the morphological characteristics of Colletotrichum spp., were obtained from Ca. yuhsienensis. A phylogenetic analysis demonstrated that YX2-5-2, 2YX-3-1 and 2YX-8-1-2 belonged to first clade along with Colletotrichum fructicola. 2YX-8-1-1 belonged to the second clade along with Colletotrichum siamense. 2YX-5-1 belonged to the third clade with Colletotrichum camelliae. Pathogenicity tests revealed that the pathogenicity of YX-Colletotrichum spp. was stronger than that of Colletotrichum spp. isolated from Camellia oleifera (GD-Colletotrichum spp.). Biological characteristics illustrated that the mycelial growth of YX-Co. camelliae (2YX-5-1) was slower than that of GD-Co. camelliae when the temperature exceeded 20 °C. In addition, in the presence of ions, the mycelial growth of YX-Co. fructicola (YX2-5-2) and YX-Co. siamense (2YX-8-1-1) was also slower than that of GD-Co. fructicola and GD-Co. siamense. Furthermore, the ability of YX-Colletotrichum spp. to utilize lactose and mannitol was weaker than that of GD-Colletotrichum spp., while the ability to utilize NH4+ was generally stronger than that of GD-Colletotrichum spp. This is the first report of anthracnose of Ca. yuhsienensis induced by Co. fructicola, Co. siamense and Co. camelliae in China. These results will provide theoretical guidance for the study of the pathogenesis and control of anthracnose on Ca. yuhsienensis.
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16
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Zhang ZQ, Chen T, Li BQ, Qin GZ, Tian SP. Molecular basis of pathogenesis of postharvest pathogenic Fungi and control strategy in fruits: progress and prospect. MOLECULAR HORTICULTURE 2021; 1:2. [PMID: 37789422 PMCID: PMC10509826 DOI: 10.1186/s43897-021-00004-x] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2021] [Accepted: 03/15/2021] [Indexed: 10/05/2023]
Abstract
The disease caused by pathogenic fungi is the main cause of postharvest loss of fresh fruits. The formulation of disease control strategies greatly depends on the understanding of pathogenic mechanism of fungal pathogens and control strategy. In recent years, based on the application of various combinatorial research methods, some pathogenic genes of important postharvest fungal pathogens in fruit have been revealed, and their functions and molecular regulatory networks of virulence have been explored. These progresses not only provide a new perspective for understanding the molecular basis and regulation mechanism of pathogenicity of postharvest pathogenic fungi, but also are beneficial to giving theoretical guidance for the creation of new technologies of postharvest disease control. Here, we synthesized these recent advances and illustrated conceptual frameworks, and identified several issues on the focus of future studies.
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Affiliation(s)
- Zhan-Quan Zhang
- Key Laboratory of Plant Resources, Institute of Botany, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100093, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Tong Chen
- Key Laboratory of Plant Resources, Institute of Botany, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100093, China
| | - Bo-Qiang Li
- Key Laboratory of Plant Resources, Institute of Botany, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100093, China
| | - Guo-Zheng Qin
- Key Laboratory of Plant Resources, Institute of Botany, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100093, China
| | - Shi-Ping Tian
- Key Laboratory of Plant Resources, Institute of Botany, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, 100093, China.
- University of Chinese Academy of Sciences, Beijing, 100049, China.
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17
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Li B, Chen Y, Tian S. Function of pH-dependent transcription factor PacC in regulating development, pathogenicity, and mycotoxin biosynthesis of phytopathogenic fungi. FEBS J 2021; 289:1723-1730. [PMID: 33751796 DOI: 10.1111/febs.15808] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2020] [Revised: 01/30/2021] [Accepted: 03/08/2021] [Indexed: 11/28/2022]
Abstract
pH, as one of the most important environmental factors, affects various biological processes in pathogenic fungi. Sensing and responding to fluctuations in ambient pH are essential for these fungi to complete their life cycle. Fungi have evolved a complicated and conserved system, the so-called Pal-pH pathway, to regulate genes and adapt to alterations in ambient pH. PacC is the dominant transcription factor in the Pal-pH pathway and regulates various biological processes. The regulatory mode of PacC has been extensively studied in Aspergillus nidulans and is generally conserved in other fungal species, including numerous phytopathogenic fungi. However, species-specific alterations have been reported. This review summarizes recent advances in the regulatory mechanisms of PacC and its role in controlling development, pathogenicity, and mycotoxin biosynthesis in phytopathogenic fungi. Potential applications of these findings and some unresolved questions are also discussed.
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Affiliation(s)
- Boqiang Li
- Key Laboratory of Plant Resources, Institute of Botany, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Yong Chen
- Key Laboratory of Plant Resources, Institute of Botany, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China
| | - Shiping Tian
- Key Laboratory of Plant Resources, Institute of Botany, The Innovative Academy of Seed Design, Chinese Academy of Sciences, Beijing, China.,University of Chinese Academy of Sciences, Beijing, China
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18
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Ngolong Ngea GL, Qian X, Yang Q, Dhanasekaran S, Ianiri G, Ballester A, Zhang X, Castoria R, Zhang H. Securing fruit production: Opportunities from the elucidation of the molecular mechanisms of postharvest fungal infections. Compr Rev Food Sci Food Saf 2021; 20:2508-2533. [DOI: 10.1111/1541-4337.12729] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Revised: 01/16/2021] [Accepted: 02/01/2021] [Indexed: 12/15/2022]
Affiliation(s)
- Guillaume Legrand Ngolong Ngea
- School of Food and Biological Engineering Jiangsu University Zhenjiang China
- Institute of Fisheries Sciences University of Douala Douala Cameroon
| | - Xin Qian
- School of Food and Biological Engineering Jiangsu University Zhenjiang China
| | - Qiya Yang
- School of Food and Biological Engineering Jiangsu University Zhenjiang China
| | | | - Giuseppe Ianiri
- Department of Agricultural, Environmental and Food Sciences, Università degli Studi del Molise Campobasso Italy
| | - Ana‐Rosa Ballester
- Department of Food Biotechnology Institute of Agrochemistry and Food Technology, Spanish National Research Council (IATA‐CSIC) Paterna Valencia Spain
| | - Xiaoyun Zhang
- School of Food and Biological Engineering Jiangsu University Zhenjiang China
| | - Raffaello Castoria
- Department of Agricultural, Environmental and Food Sciences, Università degli Studi del Molise Campobasso Italy
| | - Hongyin Zhang
- School of Food and Biological Engineering Jiangsu University Zhenjiang China
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19
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Rogério F, Boufleur TR, Ciampi-Guillardi M, Sukno SA, Thon MR, Massola Júnior NS, Baroncelli R. Genome Sequence Resources of Colletotrichum truncatum, C. plurivorum, C. musicola, and C. sojae: Four Species Pathogenic to Soybean ( Glycine max). PHYTOPATHOLOGY 2020; 110:1497-1499. [PMID: 32352862 DOI: 10.1094/phyto-03-20-0102-a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Colletotrichum is a large genus of plant pathogenic fungi comprising more than 200 species. In this work, we present the genome sequences of four Colletotrichum species pathogenic to soybean: C. truncatum, C. plurivorum, C. musicola, and C. sojae. While C. truncatum is globally considered the most important pathogen, the other three species have been described and associated with soybean only recently. The genome sequences will provide insights into factors that contribute to pathogenicity toward soybean and will be useful for further research into the evolution of Colletotrichum.
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Affiliation(s)
- Flávia Rogério
- Department of Plant Pathology and Nematology, University of São Paulo (USP), Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, São Paulo, Brazil
| | - Thaís R Boufleur
- Department of Plant Pathology and Nematology, University of São Paulo (USP), Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, São Paulo, Brazil
- Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, Villamayor, Salamanca, Spain
| | - Maisa Ciampi-Guillardi
- Department of Plant Pathology and Nematology, University of São Paulo (USP), Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, São Paulo, Brazil
| | - Serenella A Sukno
- Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, Villamayor, Salamanca, Spain
| | - Michael R Thon
- Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, Villamayor, Salamanca, Spain
| | - Nelson Sidnei Massola Júnior
- Department of Plant Pathology and Nematology, University of São Paulo (USP), Luiz de Queiroz College of Agriculture (ESALQ), Piracicaba, São Paulo, Brazil
| | - Riccardo Baroncelli
- Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), Universidad de Salamanca, Villamayor, Salamanca, Spain
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20
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Meng Y, Ren Y, Wang W, Gleason ML, Zhang R, Sun G. A Genome Sequence Resource for the Geographically Widespread Anthracnose Pathogen Colletotrichum asianum. PLANT DISEASE 2020; 104:2044-2047. [PMID: 32452717 DOI: 10.1094/pdis-01-20-0034-a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
Colletotrichum asianum is a worldwide plant pathogen causing serious fruit or leaf anthracnose diseases on a variety of plant hosts such as mango, coffee berry, chili, and other potential hosts, and it is distributed widely in Asia, America, Africa, and Oceania. This is the first genome resource available for C. asianum. The draft genome assembly will allow further analysis of species diversity and evolutionary mechanisms, and may serve as a foundation for genetic analysis that leads to greater understanding of interactions between plants and fungal pathogens.
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Affiliation(s)
- Yanan Meng
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Yihua Ren
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Wenjing Wang
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Mark L Gleason
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, U.S.A
| | - Rong Zhang
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Guangyu Sun
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province 712100, China
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21
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Fu FF, Hao Z, Wang P, Lu Y, Xue LJ, Wei G, Tian Y, Hu B, Xu H, Shi J, Cheng T, Wang G, Yi Y, Chen J. Genome Sequence and Comparative Analysis of Colletotrichum gloeosporioides Isolated from Liriodendron Leaves. PHYTOPATHOLOGY 2020; 110:1260-1269. [PMID: 32202483 DOI: 10.1094/phyto-12-19-0452-r] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
Colletotrichum gloeosporioides is a hemibiotrophic pathogen causing significant losses to economically important crops and forest trees, including Liriodendron. To explore the interaction between C. gloeosporioides and Liriodendron and to identify the candidate genes determining the pathogenesis, we sequenced and assembled the whole genome of C. gloeosporioides Lc1 (CgLc1) using PacBio and Illumina next generation sequencing and performed a comparative genomic analysis between CgLc1 and Cg01, the latter being a described endophytic species of the C. gloeosporioides complex. Gene structure prediction identified 15,744 protein-coding genes and 837 noncoding RNAs. Species-specific genes were characterized using an ortholog analysis followed by a pathway enrichment analysis, which showed that genes specific to CgLc1 were enriched for the arginine biosynthetic process. Furthermore, genome synteny analysis revealed that most of the protein-coding genes fell into collinear blocks. However, two clusters of polyketide synthase genes were identified to be specific for CgLc1, suggesting that they might have an important role in virulence control. Transcriptional regulators coexpressed with polyketide synthase genes were detected through a Weighted Correlation Network Analysis. Taken together, this work provides new insight into the virulence- and pathogenesis-associated genes present in C. gloeosporioides and its possible lifestyle.
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Affiliation(s)
- Fang-Fang Fu
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education of China, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
- College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Zhaodong Hao
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education of China, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
- College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Pengkai Wang
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education of China, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
- College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Ye Lu
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education of China, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
- College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Liang-Jiao Xue
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education of China, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
- College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Guoyu Wei
- Shanghai Municipal Agricultural and Rural Affairs Commission, Shanghai, China
| | - Yanli Tian
- College of Plant Protection and Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing Agricultural University, Nanjing, China
| | - Baishi Hu
- College of Plant Protection and Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing Agricultural University, Nanjing, China
| | - Haibin Xu
- College of Biology and the Environment, Nanjing Forestry University, Nanjing, China
| | - Jisen Shi
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education of China, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
- College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Tielong Cheng
- College of Biology and the Environment, Nanjing Forestry University, Nanjing, China
| | - Guibin Wang
- College of Forestry, Nanjing Forestry University, Nanjing, China
| | - Yin Yi
- State Forestry Administration Key Laboratory of Biodiversity Conservation in Karst Mountainous Areas of Southwestern China, Guizhou Normal University, Guiyang, China
- Guizhou Provincial Key Laboratory of Plant Physiology and Developmental Regulation, Guizhou Normal University, Guiyang, China
| | - Jinhui Chen
- Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education of China, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing, China
- College of Forestry, Nanjing Forestry University, Nanjing, China
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22
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Ziv C, Kumar D, Sela N, Itkin M, Malitsky S, Schaffer AA, Prusky DB. Sugar-regulated susceptibility of tomato fruit to Colletotrichum and Penicillium requires differential mechanisms of pathogenicity and fruit responses. Environ Microbiol 2020; 22:2870-2891. [PMID: 32323444 DOI: 10.1111/1462-2920.15031] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2019] [Revised: 04/17/2020] [Accepted: 04/17/2020] [Indexed: 12/22/2022]
Abstract
Colletotrichum gloeosporioides and Penicillium expansum cause postharvest diseases in tropical and deciduous fruit. During colonization, C. gloeosporioides and P. expansum secrete ammonia in hosts with low sugar content (LowSC) and gluconic acid in hosts with high sugar content (HighSC), respectively, as a mechanism to modulate enhanced pathogenicity. We studied the pathogens interactions with tomato lines of similar genetic background but differing in their sugar content. Colletotrichum gloeosporioides showed enhanced colonization of the LowSC line with differential expression response of 15% of its genes including enhanced relative expression of glycosyl hydrolases, glucanase and MFS-transporter genes. Enhanced colonization of P. expansum occurred in the HighSC line, accompanied by an increase in carbohydrate metabolic processes mainly phosphoenolpyruvate carboxykinase, and only 4% of differentially expressed genes. Gene response of the two host lines strongly differed depending on the sugar level. Limited colonization of HighSC line by C. gloeosporioides was accompanied by a marked alteration of gene expression compared the LowSC response to the same pathogen; while colonization by P. expansum resulted in a similar response of the two different hosts. We suggest that this differential pattern of fungal/host responses may be the basis for the differential of host range of both pathogens in nature.
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Affiliation(s)
- Carmit Ziv
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Center, Rishon LeZion, 7505101, Israel
| | - Dilip Kumar
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Center, Rishon LeZion, 7505101, Israel
| | - Noa Sela
- Department of Plant Pathology and Weed Research, Agricultural Research Organization, The Volcani Center, Rishon LeZion, 7505101, Israel
| | - Maxim Itkin
- Life Science Core Facilities, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Sergey Malitsky
- Life Science Core Facilities, Weizmann Institute of Science, Rehovot, 7610001, Israel
| | - Arthur A Schaffer
- Department of Plant Sciences, Agricultural Research Organization, The Volcani Center, Rishon LeZion, 7505101, Israel
| | - Dov B Prusky
- Department of Postharvest Science, Agricultural Research Organization, The Volcani Center, Rishon LeZion, 7505101, Israel
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23
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Sudheeran PK, Ovadia R, Galsarker O, Maoz I, Sela N, Maurer D, Feygenberg O, Oren Shamir M, Alkan N. Glycosylated flavonoids: fruit's concealed antifungal arsenal. THE NEW PHYTOLOGIST 2020; 225:1788-1798. [PMID: 31598980 DOI: 10.1111/nph.16251] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2019] [Accepted: 10/04/2019] [Indexed: 05/26/2023]
Abstract
Fruit defense against pathogens relies on induced and preformed mechanisms. The present contribution evaluated performed resistance of red and green mango fruit against the fungal pathogen Colletotrichum gloeosporioides and identified the main active antifungal components. High-performance liquid chromatography analysis of nonhydrolyzed mango peel extracts identified major anthocyanin peaks of glycosylated cyanidin and methylcyanidin, and flavonol peaks of glycosylated quercetin and kaempferol, which were more abundant on the 'red side' of red mango fruit. Organic extracts of red vs green mango peel were more efficient in inhibiting C. gloeosporioides. Transcriptome analysis of the mango-C. gloeosporioides interaction showed increased expression of glucosidase genes related to both fungal pathogenicity and host defense. Glucosidase treatment of organic peel extract increased its antifungal activity. Additionally, quercetin and cyanidin had significantly higher antifungal activity than their glycosylated derivatives. Peel extract volatiles treated with glucosidase had antifungal activity. GCMS analysis identified 15 volatiles after glucosidase hydrolysis, seven of them present only in red fruit. These results suggest that the fruit obtains a concealed arsenal of glycosylated flavonoids in its peel when they are hydrolyzed by β-glucosidase that is induced in both fungus and host during infection process, become more toxic to the fungal pathogen, inhibiting decay development.
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Affiliation(s)
- Pradeep Kumar Sudheeran
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, PO Box 15159, HaMaccabim Road 68, Rishon LeZion 7505101, Israel
| | - Rinat Ovadia
- Department of Ornamental Plants and Agricultural Biotechnology, Agricultural Research Organization, Volcani Center, PO Box 15159, HaMaccabim Road 68, Rishon LeZion, 7505101, Israel
| | - Ortal Galsarker
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, PO Box 15159, HaMaccabim Road 68, Rishon LeZion 7505101, Israel
| | - Itay Maoz
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, PO Box 15159, HaMaccabim Road 68, Rishon LeZion 7505101, Israel
| | - Noa Sela
- Department of Plant Pathology, Agricultural Research Organization, Volcani Center, PO Box 15159, HaMaccabim Road 68, Rishon LeZion, 7505101, Israel
| | - Dalia Maurer
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, PO Box 15159, HaMaccabim Road 68, Rishon LeZion 7505101, Israel
| | - Oleg Feygenberg
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, PO Box 15159, HaMaccabim Road 68, Rishon LeZion 7505101, Israel
| | - Michal Oren Shamir
- Department of Ornamental Plants and Agricultural Biotechnology, Agricultural Research Organization, Volcani Center, PO Box 15159, HaMaccabim Road 68, Rishon LeZion, 7505101, Israel
| | - Noam Alkan
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, Volcani Center, PO Box 15159, HaMaccabim Road 68, Rishon LeZion 7505101, Israel
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da Silva LL, Moreno HLA, Correia HLN, Santana MF, de Queiroz MV. Colletotrichum: species complexes, lifestyle, and peculiarities of some sources of genetic variability. Appl Microbiol Biotechnol 2020; 104:1891-1904. [PMID: 31932894 DOI: 10.1007/s00253-020-10363-y] [Citation(s) in RCA: 48] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2019] [Revised: 12/30/2019] [Accepted: 01/09/2020] [Indexed: 11/25/2022]
Abstract
The genus Colletotrichum comprises species with different lifestyles but is mainly known for phytopathogenic species that infect crops of agronomic relevance causing considerable losses. The fungi of the genus Colletotrichum are distributed in species complexes and within each complex some species have particularities regarding their lifestyle. The most commonly found and described lifestyles in Colletotrichum are endophytic and hemibiotrophic phytopathogenic. Several of these phytopathogenic species show wide genetic variability, which makes long-term maintenance of resistance in plants difficult. Different mechanisms may play an important role in the emergence of genetic variants but are not yet fully understood in this genus. These mechanisms include heterokaryosis, a parasexual cycle, sexual cycle, transposable element activity, and repeat-induced point mutations. This review provides an overview of the genus Colletotrichum, the species complexes described so far and the most common lifestyles in the genus, with a special emphasis on the mechanisms that may be responsible, at least in part, for the emergence of new genotypes under field conditions.
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Affiliation(s)
- Leandro Lopes da Silva
- Laboratório de Genética Molecular de Fungos, Departamento de Microbiologia/Instituto de Biotecnologia Aplicada à Agropecuária (BIOAGRO), Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Hanna Lorena Alvarado Moreno
- Laboratório de Genética Molecular de Fungos, Departamento de Microbiologia/Instituto de Biotecnologia Aplicada à Agropecuária (BIOAGRO), Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Hilberty Lucas Nunes Correia
- Laboratório de Genética Molecular de Fungos, Departamento de Microbiologia/Instituto de Biotecnologia Aplicada à Agropecuária (BIOAGRO), Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Mateus Ferreira Santana
- Laboratório de Genética Molecular de Fungos, Departamento de Microbiologia/Instituto de Biotecnologia Aplicada à Agropecuária (BIOAGRO), Universidade Federal de Viçosa, Viçosa, MG, Brazil
| | - Marisa Vieira de Queiroz
- Laboratório de Genética Molecular de Fungos, Departamento de Microbiologia/Instituto de Biotecnologia Aplicada à Agropecuária (BIOAGRO), Universidade Federal de Viçosa, Viçosa, MG, Brazil.
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25
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Hu Y, Lian L, Xia J, Hu S, Xu W, Zhu J, Ren A, Shi L, Zhao MW. Influence of PacC on the environmental stress adaptability and cell wall components of Ganoderma lucidum. Microbiol Res 2019; 230:126348. [PMID: 31639624 DOI: 10.1016/j.micres.2019.126348] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2019] [Revised: 09/01/2019] [Accepted: 09/28/2019] [Indexed: 10/25/2022]
Abstract
The transcription factor PacC/Rim101 participates in environmental pH adaptation, development and secondary metabolism in many fungi, but whether PacC/Rim101 contributes to fungal adaptation to environmental stress remains unclear. In our previous study, a homologous gene of PacC/Rim101 was identified, and PacC-silenced strains of the agaricomycete Ganoderma lucidum were constructed. In this study, we further investigated the functions of PacC in G. lucidum and found that PacC-silenced strains were hypersensitive to environmental stresses, such as osmotic stress, oxidative stress and cell wall stress, compared with wild-type (WT) and empty-vector control (CK) strains. In addition, transmission electron microscopy images of the cell wall structure showed that the cell walls of the PacC-silenced strains were thinner (by approximately 25-30%) than those of the WT and CK strains. Further analysis of cell wall composition showed that the β-1,3-glucan content in the PacC-silenced strains was only approximately 78-80% of that in the WT strain, and the changes in β-1,3-glucan content were consistent with downregulation of glucan synthase gene expression. The ability of PacC to bind to the promoters of glucan synthase-encoding genes confirms that PacC transcriptionally regulates these genes.
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Affiliation(s)
- Yanru Hu
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Jiangsu, Nanjing 210095, People's Republic of China
| | - Lingdan Lian
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Jiangsu, Nanjing 210095, People's Republic of China
| | - Jiale Xia
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Jiangsu, Nanjing 210095, People's Republic of China
| | - Shishan Hu
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Jiangsu, Nanjing 210095, People's Republic of China
| | - Wenzhao Xu
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Jiangsu, Nanjing 210095, People's Republic of China
| | - Jing Zhu
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Jiangsu, Nanjing 210095, People's Republic of China
| | - Ang Ren
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Jiangsu, Nanjing 210095, People's Republic of China
| | - Liang Shi
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Jiangsu, Nanjing 210095, People's Republic of China
| | - Ming Wen Zhao
- Key Laboratory of Agricultural Environmental Microbiology, Ministry of Agriculture, Microbiology Department, College of Life Sciences, Nanjing Agricultural University, Jiangsu, Nanjing 210095, People's Republic of China.
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Eisermann I, Weihmann F, Krijger JJ, Kröling C, Hause G, Menzel M, Pienkny S, Kiesow A, Deising HB, Wirsel SGR. Two genes in a pathogenicity gene cluster encoding secreted proteins are required for appressorial penetration and infection of the maize anthracnose fungus Colletotrichum graminicola. Environ Microbiol 2019; 21:4773-4791. [PMID: 31599055 DOI: 10.1111/1462-2920.14819] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Revised: 10/01/2019] [Accepted: 10/02/2019] [Indexed: 01/14/2023]
Abstract
To avoid pathogen-associated molecular pattern recognition, the hemibiotrophic maize pathogen Colletotrichum graminicola secretes proteins mediating the establishment of biotrophy. Targeted deletion of 26 individual candidate genes and seven gene clusters comprising 32 genes of C. graminicola identified a pathogenicity cluster (CLU5) of five co-linear genes, all of which, with the exception of CLU5b, encode secreted proteins. Targeted deletion of all genes of CLU5 revealed that CLU5a and CLU5d are required for full appressorial penetration competence, with virulence deficiencies independent of the host genotype and organ inoculated. Cytorrhysis experiments and microscopy showed that Δclu5a mutants form pressurized appressoria, but they are hampered in forming penetration pores and fail to differentiate a penetration peg. Whereas Δclu5d mutants elicited WT-like papillae, albeit at increased frequencies, papillae induced by Δclu5a mutants were much smaller than those elicited by the WT. Synteny of CLU5 is not only conserved in Colletotrichum spp. but also in additional species of Sordariomycetes including insect pathogens and saprophytes suggesting importance of CLU5 for fungal biology. Since CLU5a and CLU5d also occur in non-pathogenic fungi and since they are expressed prior to plant invasion and even in vegetative hyphae, the encoded proteins probably do not act primarily as effectors.
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Affiliation(s)
- Iris Eisermann
- Institut für Agrar- und Ernährungswissenschaften, Naturwissenschaftliche Fakultät III, Martin-Luther-Universität Halle-Wittenberg, Betty-Heimann-Str. 3, D-06120, Halle (Saale), Germany
| | - Fabian Weihmann
- Institut für Agrar- und Ernährungswissenschaften, Naturwissenschaftliche Fakultät III, Martin-Luther-Universität Halle-Wittenberg, Betty-Heimann-Str. 3, D-06120, Halle (Saale), Germany
| | - Jorrit-Jan Krijger
- Institut für Agrar- und Ernährungswissenschaften, Naturwissenschaftliche Fakultät III, Martin-Luther-Universität Halle-Wittenberg, Betty-Heimann-Str. 3, D-06120, Halle (Saale), Germany
| | - Christian Kröling
- Institut für Agrar- und Ernährungswissenschaften, Naturwissenschaftliche Fakultät III, Martin-Luther-Universität Halle-Wittenberg, Betty-Heimann-Str. 3, D-06120, Halle (Saale), Germany.,Sächsisches Landesamt für Umwelt, Landwirtschaft und Geologie, Abteilung Obst-, Gemüse- und Weinbau, August-Böckstiegel-Str. 1, D-01326, Dresden-Pillnitz, Germany
| | - Gerd Hause
- Biozentrum der Martin-Luther-Universität Halle-Wittenberg, Weinbergweg 22, D-06120, Halle (Saale), Germany
| | - Matthias Menzel
- Fraunhofer-Institut für Mikrostruktur von Werkstoffen und Systemen, Biologische und makromolekulare Materialien, Walter-Hülse-Str. 1, D-06120, Halle (Saale), Germany
| | - Silke Pienkny
- Department of Bioorganic Chemistry, Leibniz Institute of Plant Biochemistry, Weinberg 3, D-06120, Halle (Saale), Germany
| | - Andreas Kiesow
- Fraunhofer-Institut für Mikrostruktur von Werkstoffen und Systemen, Biologische und makromolekulare Materialien, Walter-Hülse-Str. 1, D-06120, Halle (Saale), Germany
| | - Holger B Deising
- Institut für Agrar- und Ernährungswissenschaften, Naturwissenschaftliche Fakultät III, Martin-Luther-Universität Halle-Wittenberg, Betty-Heimann-Str. 3, D-06120, Halle (Saale), Germany
| | - Stefan G R Wirsel
- Institut für Agrar- und Ernährungswissenschaften, Naturwissenschaftliche Fakultät III, Martin-Luther-Universität Halle-Wittenberg, Betty-Heimann-Str. 3, D-06120, Halle (Saale), Germany
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27
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He S, An T, A R, Liu S. Validation of Reliable Reference Genes for RT-qPCR Studies of Target Gene Expression in Colletotrichum camelliae During Spore Germination and Mycelial Growth and Interaction With Host Plants. Front Microbiol 2019; 10:2055. [PMID: 31551988 PMCID: PMC6737088 DOI: 10.3389/fmicb.2019.02055] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Accepted: 08/20/2019] [Indexed: 11/13/2022] Open
Abstract
The tea plant [Camellia sinensis (L.) O. Kuntze] is one of the most important leaf crops, and it is widely used for the production of non-alcoholic beverages worldwide. Tea also has a long history of medicinal use. Colletotrichum camelliae Massee is one of the dominant fungal pathogens that infects tea leaves and causes severe tea anthracnose disease. To analyze the molecular biology of C. camelliae, the quantification of pathogen gene expression by the RT-qPCR method is necessary. Reliable RT-qPCR results require the use of stable reference genes for data normalization. However, suitable reference genes have not been reported in C. camelliae thus far. In this study, 12 candidate genes (i.e., CcSPAC6B12.04c, CcWDR83, Cchp11, Ccnew1, CcHplo, CcRNF5, CcHpcob, CcfaeB-2, CcYER010C, CcRNM1, CcUP18, and CcACT) were isolated from C. camelliae and assessed as potential reference genes. The expression stability of these genes in C. camelliae during spore germination and mycelial growth and interaction with host plants was first evaluated using several statistical algorithms, such as geNorm, NormFinder, and Bestkeeper. A web-based analysis program, Refinder, was then used to find the most suitable reference genes. Our results indicated that Cenew1, CcHplo, and CcSPAC6B12.04c were the most stable reference genes in C. camelliae under all conditions. Our work provided the most suitable reference genes for future studies performed to quantify the target gene expression levels of C. camelliae.
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Affiliation(s)
- Shengnan He
- Laboratory of Molecular Plant Pathology, College of Plant Science, Jilin University, Changchun, China
| | - Tai An
- Laboratory of Molecular Plant Pathology, College of Plant Science, Jilin University, Changchun, China
| | - Runa A
- Laboratory of Molecular Plant Pathology, College of Plant Science, Jilin University, Changchun, China
| | - Shouan Liu
- Laboratory of Molecular Plant Pathology, College of Plant Science, Jilin University, Changchun, China
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28
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Gan P, Tsushima A, Hiroyama R, Narusaka M, Takano Y, Narusaka Y, Kawaradani M, Damm U, Shirasu K. Colletotrichum shisoi sp. nov., an anthracnose pathogen of Perilla frutescens in Japan: molecular phylogenetic, morphological and genomic evidence. Sci Rep 2019; 9:13349. [PMID: 31527702 PMCID: PMC6746953 DOI: 10.1038/s41598-019-50076-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2019] [Accepted: 09/05/2019] [Indexed: 11/09/2022] Open
Abstract
Species of the fungal genus Colletotrichum are among the most devastating pathogens of agricultural crops in the world. Based on DNA sequence data (ITS, GAPDH, CHS-1, ACT, TUB2) and morphology, we revealed Colletotrichum isolates infecting the oil crop Perilla frutescens, commonly known as shiso, to represent a previously unknown species of the C. destructivum species complex and described it as C. shisoi. We found that C. shisoi appears to be able to adopt a hemibiotrophic lifestyle, characterised by the formation of biotrophic hyphae followed by severe necrotic lesions on P. frutescens, but is less virulent on Arabidopsis, compared to its close relative C. higginsianum which also belongs to the C. destructivum species complex. The genome of C. shisoi was sequenced, annotated and its predicted proteome compared with four other Colletotrichum species. The predicted proteomes of C. shisoi and C. higginsianum, share many candidate effectors, which are small, secreted proteins that may contribute to infection. Interestingly, C. destructivum species complex-specific secreted proteins showed evidence of increased diversifying selection which may be related to their host specificities.
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Affiliation(s)
- P Gan
- RIKEN Center for Sustainable Resource Sciences, Yokohama, Kanagawa, Japan
| | - A Tsushima
- RIKEN Center for Sustainable Resource Sciences, Yokohama, Kanagawa, Japan.,Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, Japan
| | - R Hiroyama
- RIKEN Center for Sustainable Resource Sciences, Yokohama, Kanagawa, Japan
| | - M Narusaka
- Research Institute for Biological Sciences, Okayama Prefectural Technology Center for Agriculture, Forestry, and Fisheries, Okayama, Japan
| | - Y Takano
- Graduate School of Agriculture, Kyoto University, Kyoto, Japan
| | - Y Narusaka
- Research Institute for Biological Sciences, Okayama Prefectural Technology Center for Agriculture, Forestry, and Fisheries, Okayama, Japan
| | - M Kawaradani
- Research Institute of Environment, Agriculture and Fisheries, Osaka, Japan
| | - U Damm
- Senckenberg Museum of Natural History Görlitz, 02806, Görlitz, Germany
| | - K Shirasu
- RIKEN Center for Sustainable Resource Sciences, Yokohama, Kanagawa, Japan. .,Graduate School of Science, The University of Tokyo, Bunkyo, Tokyo, Japan.
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29
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Lanza M, Haro R, Conchillo LB, Benito B. The endophyte Serendipita indica reduces the sodium content of Arabidopsis plants exposed to salt stress: fungal ENA ATPases are expressed and regulated at high pH and during plant co-cultivation in salinity. Environ Microbiol 2019; 21:3364-3378. [PMID: 30945789 DOI: 10.1111/1462-2920.14619] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Revised: 03/11/2019] [Accepted: 04/03/2019] [Indexed: 01/12/2023]
Abstract
Serendipita indica (formerly Piriformospora indica) is an endophytic fungus that colonizes plant roots producing a beneficial effect on plant growth and development under optimal and suboptimal conditions provoked by any biotic or abiotic stress, such as salt stress. Salinity induces osmotic and ionic imbalances in plants, mainly by altering the Na+ and K+ contents. However, the mechanism by which Serendipita improves plant growth has yet to be elucidated. Previous works suggest that this fungus improves the plant osmotic state but not much is known about whether it participates in readjustment of the ionic imbalance in plants. Here, we report that co-cultivation with Serendipita reduces the Na+ content of Arabidopsis plants under saline conditions. Additionally, we describe the functional characterization of the two Serendipita ENA ATPases, which are homologous to the main proteins involved in the salt tolerance of other fungi. Their heterologous expression in salt-sensitive yeast mutants shows that SiENA1 is involved in Na+ and K+ efflux, while SiENA5 seems to only be involved in Na+ detoxification. Both are induced and might have a relevant function at alkaline pH, condition in which there are few chlamydospores in the mycelium, as well as during co-cultivation with plants exposed to saline conditions.
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Affiliation(s)
- Mónica Lanza
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM. 28223-Pozuelo de Alarcón, Madrid, Spain
| | - Rosario Haro
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM. 28223-Pozuelo de Alarcón, Madrid, Spain.,Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, UPM, 28040-Madrid, Spain
| | - Lorena B Conchillo
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM. 28223-Pozuelo de Alarcón, Madrid, Spain
| | - Begoña Benito
- Centro de Biotecnología y Genómica de Plantas, Universidad Politécnica de Madrid (UPM) - Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus Montegancedo UPM. 28223-Pozuelo de Alarcón, Madrid, Spain.,Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, UPM, 28040-Madrid, Spain
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30
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Meng Y, Gleason ML, Zhang R, Sun G. Genome Sequence Resource of the Wide-Host-Range Anthracnose Pathogen Colletotrichum siamense. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2019; 32:931-934. [PMID: 30893002 DOI: 10.1094/mpmi-01-19-0010-a] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Colletotrichum siamense causes fruit or foliar disease called anthracnose on a variety of plant hosts such as vegetables, fruits, ornamental plants, and others, including chili pepper, apple, American cranberry, mango, orange, papaya, guava, rubber plant, jasmine, coffee berry, and tea plants. Here, we report the first Illumina-sequenced draft genome assembly of C. siamense strain ICMP 18578 and its annotation. This genome sequence provides a unique resource that will be useful for future research on the evolution of Colletotrichum spp. and improvement of anthracnose management strategies.
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Affiliation(s)
- Yanan Meng
- 1State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Mark L Gleason
- 2Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, U.S.A
| | - Rong Zhang
- 1State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province 712100, China
| | - Guangyu Sun
- 1State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province 712100, China
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31
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Louw JP, Korsten L. Impact of Postharvest Storage on the Infection and Colonization of Penicillium digitatum and Penicillium expansum on Nectarine. PLANT DISEASE 2019; 103:1584-1594. [PMID: 31025905 DOI: 10.1094/pdis-08-18-1475-re] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Very few studies have investigated the host-pathogen interaction of Penicillium spp. on nectarine. Penicillium digitatum was identified as pathogenic and highly aggressive on nectarine. A strong association was made with host age/ripeness. This points to a new mechanism or life strategy used by P. digitatum to infect and colonize previously thought nonhosts. The aim of this study was to determine the effect of postharvest storage of nectarine on the infection and colonization of P. digitatum and Penicillium expansum at molecular and physical (firmness and pH) levels. The impact of environmental conditions (cold storage) and pathogen pressure (inoculum load) was also investigated. Although disease incidence was much lower, lesions caused by P. digitatum were similar in size to those caused by P. expansum on freshly harvested nectarine. Disease incidence and lesion diameter significantly increased (larger than P. expansum) on longer stored fruit. Cold storage had the largest effect on P. digitatum. Inoculum load had a meaningful effect on both Penicillium spp. Storage significantly affected pH modulation and gene expression. The pathogens not only decreased but also, increased and maintained (similar to initial pH of the host) pH of infected tissue. The polygalacturonase (PG) gene and creA were upregulated by P. digitatum on 7-day postharvest fruit (other genes were unaffected). It partly explains the larger lesions on older or riper fruit. A different expression profile was observed from P. expansum: strong downregulation in PG and slight upregulation in pacC. Very different life strategies were used by the two Penicillium spp. when infecting nectarine. Unlike what is known on citrus, P. digitatum showed an opportunistic lifestyle that takes advantage of specific host and environmental conditions. It is largely still unclear (gene expression) what specifically triggers the increase in disease incidence (infection) and lesion diameter (colonization) of P. digitatum on older or riper fruit. The differences between in vivo and in vitro studies make it difficult to directly correlate results. Additional research is still needed to differentiate and understand the infection and colonization of these pathogens on the same host.
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Affiliation(s)
- Johannes Petrus Louw
- 1 Department of Plant and Soil Sciences, University of Pretoria, Hillcrest 0083, South Africa
- 2 University of Pretoria, Pretoria 0028, South Africa
| | - Lise Korsten
- 1 Department of Plant and Soil Sciences, University of Pretoria, Hillcrest 0083, South Africa
- 2 University of Pretoria, Pretoria 0028, South Africa
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32
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Lelwala RV, Korhonen PK, Young ND, Scott JB, Ades PK, Gasser RB, Taylor PWJ. Comparative genome analysis indicates high evolutionary potential of pathogenicity genes in Colletotrichum tanaceti. PLoS One 2019; 14:e0212248. [PMID: 31150449 PMCID: PMC6544218 DOI: 10.1371/journal.pone.0212248] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2019] [Accepted: 05/02/2019] [Indexed: 01/30/2023] Open
Abstract
Colletotrichum tanaceti is an emerging foliar fungal pathogen of commercially grown pyrethrum (Tanacetum cinerariifolium). Despite being reported consistently from field surveys in Australia, the molecular basis of pathogenicity of C. tanaceti on pyrethrum is unknown. Herein, the genome of C. tanaceti (isolate BRIP57314) was assembled de novo and annotated using transcriptomic evidence. The inferred putative pathogenicity gene suite of C. tanaceti comprised a large array of genes encoding secreted effectors, proteases, CAZymes and secondary metabolites. Comparative analysis of its putative pathogenicity gene profiles with those of closely related species suggested that C. tanaceti likely has additional hosts to pyrethrum. The genome of C. tanaceti had a high repeat content and repetitive elements were located significantly closer to genes inferred to influence pathogenicity than other genes. These repeats are likely to have accelerated mutational and transposition rates in the genome, resulting in a rapid evolution of certain CAZyme families in this species. The C. tanaceti genome showed strong signals of Repeat Induced Point (RIP) mutation which likely caused its bipartite nature consisting of distinct gene-sparse, repeat and A-T rich regions. Pathogenicity genes within these RIP affected regions were likely to have a higher evolutionary rate than the rest of the genome. This "two-speed" genome phenomenon in certain Colletotrichum spp. was hypothesized to have caused the clustering of species based on the pathogenicity genes, to deviate from taxonomic relationships. The large repertoire of pathogenicity factors that potentially evolve rapidly due to the plasticity of the genome, indicated that C. tanaceti has a high evolutionary potential. Therefore, C. tanaceti poses a high-risk to the pyrethrum industry. Knowledge of the evolution and diversity of the putative pathogenicity genes will facilitate future research in disease management of C. tanaceti and other Colletotrichum spp.
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Affiliation(s)
- Ruvini V. Lelwala
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia
| | - Pasi K. Korhonen
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia
| | - Neil D. Young
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia
| | - Jason B. Scott
- Tasmanian Institute of Agriculture, University of Tasmania, Burnie, Tasmania, Australia
| | - Peter K. Ades
- Faculty of Science, The University of Melbourne, Parkville, Victoria, Australia
| | - Robin B. Gasser
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia
| | - Paul W. J. Taylor
- Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, Parkville, Victoria, Australia
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33
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Huang L, Kim KT, Yang JY, Song H, Choi G, Jeon J, Cheong K, Ko J, Xu H, Lee YH. A High-Quality Draft Genome Sequence of Colletotrichum gloeosporioides sensu stricto SMCG1#C, a Causal Agent of Anthracnose on Cunninghamia lanceolata in China. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2019; 32:139-141. [PMID: 30019989 DOI: 10.1094/mpmi-05-18-0144-a] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Colletotrichum has a broad host range and causes major yield losses of crops. The fungus Colletotrichum gloeosporioides is associated with anthracnose on Chinese fir. In this study, we present a high-quality draft genome sequence of C. gloeosporioides sensu stricto SMCG1#C, providing a reference genomic data for further research on anthracnose of Chinese fir and other hosts.
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Affiliation(s)
- Lin Huang
- 1 Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
| | - Ki-Tae Kim
- 2 Department of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea
| | - Ji-Yun Yang
- 1 Co-Innovation Center for Sustainable Forestry in Southern China, College of Forestry, Nanjing Forestry University, Nanjing, Jiangsu 210037, China
| | - Hyeunjeong Song
- 3 Interdisciplinary Program in Agricultural Genomics, Seoul National University
| | - Gobong Choi
- 3 Interdisciplinary Program in Agricultural Genomics, Seoul National University
| | - Jongbum Jeon
- 3 Interdisciplinary Program in Agricultural Genomics, Seoul National University
| | - Kyeongchae Cheong
- 3 Interdisciplinary Program in Agricultural Genomics, Seoul National University
| | - Jaeho Ko
- 2 Department of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea
| | - Haibin Xu
- 4 College of Biology and the Environment, Nanjing Forestry University; and
| | - Yong-Hwan Lee
- 2 Department of Agricultural Biotechnology, Seoul National University, Seoul 08826, Korea
- 3 Interdisciplinary Program in Agricultural Genomics, Seoul National University
- 5 Center for Fungal Genetic Resources, Plant Genomics and Breeding Institute, and Research Institute of Agriculture and Life Sciences, Seoul National University
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Lu Q, Wang Y, Li N, Ni D, Yang Y, Wang X. Differences in the Characteristics and Pathogenicity of Colletotrichum camelliae and C. fructicola Isolated From the Tea Plant [ Camellia sinensis (L.) O. Kuntze]. Front Microbiol 2018; 9:3060. [PMID: 30619146 PMCID: PMC6297754 DOI: 10.3389/fmicb.2018.03060] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2018] [Accepted: 11/27/2018] [Indexed: 12/11/2022] Open
Abstract
Colletotrichum, the causative agent of anthracnose, is an important pathogen that invades the tea plant (Camellia sinensis). In this study, 38 isolates were obtained from the diseased leaves of tea plants collected in different areas of Zhejiang Province, China. A combination of multigene (ITS, ACT, GAPDH, TUB2, CAL, and GS) and morphology analyses showed that the 38 strains belonged to two different species, namely, C. camelliae (CC), and C. fructicola (CF). Pathogenicity tests revealed that CC was more invasive than CF. In vitro inoculation experiments demonstrated that CC formed acervuli at 72 hpi and developed appressoria on wound edges, but CF did not develop these structures. Under treatment with catechins and caffeine, the growth inhibition rates of CF were remarkably higher than those of CC, indicating that the nonpathogenic species CF was more vulnerable to catechins and caffeine. Growth condition testing indicated that CF grew at a wide temperature range of 15-35°C and that the optimum temperature for CC growth was 25°C. Growth of both CC and CF did not differ between acidic and weakly alkaline environments (pH 5-8), but the growth of CC was significantly reduced at pH values of 9 and 10. Furthermore, the PacC/RIM101 gene, which associated with pathogenicity, was identified from CC and CF genomes, and its expression was suppressed in the hyphae of both species under pH value of 5 and 10, and much lower expression level was detected in CC than that in CF at pH 6. These results indicated that temperature has more important effect than pH for the growth of two Colletotrichum species. In conclusion, the inhibition by secondary metabolite is an important reason why the pathogenicity by CC and CF are different to tea plant, although the environmental factors including pH and temperature effect the growth of two Colletotrichum species.
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Affiliation(s)
- Qinhua Lu
- Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture and Rural Affairs, National Center for Tea Improvement, Tea Research Institute of Chinese Academy of Agricultural Sciences, Hangzhou, China
- College of Horticulture and Forestry, Huazhong Agricultural University, Wuhan, China
| | - Yuchun Wang
- Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture and Rural Affairs, National Center for Tea Improvement, Tea Research Institute of Chinese Academy of Agricultural Sciences, Hangzhou, China
| | - Nana Li
- Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture and Rural Affairs, National Center for Tea Improvement, Tea Research Institute of Chinese Academy of Agricultural Sciences, Hangzhou, China
| | - Dejiang Ni
- College of Horticulture and Forestry, Huazhong Agricultural University, Wuhan, China
| | - Yajun Yang
- Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture and Rural Affairs, National Center for Tea Improvement, Tea Research Institute of Chinese Academy of Agricultural Sciences, Hangzhou, China
| | - Xinchao Wang
- Key Laboratory of Tea Biology and Resources Utilization, Ministry of Agriculture and Rural Affairs, National Center for Tea Improvement, Tea Research Institute of Chinese Academy of Agricultural Sciences, Hangzhou, China
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Baroncelli R, Sukno SA, Sarrocco S, Cafà G, Le Floch G, Thon MR. Whole-Genome Sequence of the Orchid Anthracnose Pathogen Colletotrichum orchidophilum. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2018; 31:979-981. [PMID: 29649963 DOI: 10.1094/mpmi-03-18-0055-a] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Colletotrichum orchidophilum is a plant-pathogenic fungus infecting a wide range of plant species belonging to the family Orchidaceae. In addition to its economic impact, C. orchidophilum has been used in recent years in evolutionary studies because it represents the closest related species to the C. acutatum species complex. Here, we present the first-draft whole-genome sequence of C. orchidophilum IMI 309357, providing a resource for future research on anthracnose of Orchidaceae and other hosts.
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Affiliation(s)
- Riccardo Baroncelli
- 1 Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Université de Brest, EA 3882, Technopôle Brest-Iroise, 29280 Plouzané, France
- 2 Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), University of Salamanca, Calle del Duero, 12; 37185 Villamayor (Salamanca), Spain
| | - Serenella A Sukno
- 2 Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), University of Salamanca, Calle del Duero, 12; 37185 Villamayor (Salamanca), Spain
| | - Sabrina Sarrocco
- 3 Department of Agricultural, Food and Environment, University of Pisa, Via del Borghetto 80, Pisa, Italy; and
| | - Giovanni Cafà
- 4 CABI Europe-UK, Bakeham Lane, Egham, Surrey TW20 9TY, U.K
| | - Gaetan Le Floch
- 1 Laboratoire Universitaire de Biodiversité et Ecologie Microbienne, IBSAM, ESIAB, Université de Brest, EA 3882, Technopôle Brest-Iroise, 29280 Plouzané, France
| | - Michael R Thon
- 2 Instituto Hispano-Luso de Investigaciones Agrarias (CIALE), University of Salamanca, Calle del Duero, 12; 37185 Villamayor (Salamanca), Spain
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Rascle C, Dieryckx C, Dupuy JW, Muszkieta L, Souibgui E, Droux M, Bruel C, Girard V, Poussereau N. The pH regulator PacC: a host-dependent virulence factor in Botrytis cinerea. ENVIRONMENTAL MICROBIOLOGY REPORTS 2018; 10:555-568. [PMID: 30066486 DOI: 10.1111/1758-2229.12663] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2017] [Accepted: 05/21/2018] [Indexed: 05/29/2023]
Abstract
The phytopathogenic fungus Botrytis cinerea is able to infect a wide variety of plants and plant tissues with differing chemical compositions. During its interaction with the host, this pathogen modulates its ambient pH by secreting acids or ammonia. In this work, we examined the Pal/Pac pathway, the fungal ambient pH-responsive signalling circuit, and investigated the role of the PacC transcription factor. Characterization of the BcpacC deletion mutant revealed an alteration of both fungal growth and virulence depending on the pH of the culture medium or of the host tissue. The pathogenicity of the mutant was altered on plants exhibiting a neutral pH and not on plants with acidic tissues. The capacity of the mutant to acidify its environment and, more particularly, to produce oxalic acid was affected, as was production of reactive oxygen species. Finally, proteomic profiling of the mutant secretome revealed significant changes in plant cell wall polysaccharides proteins and lipid degradation and oxidoreduction, highlighting the importance of BcPacC in the necrotrophic lifestyle of B. cinerea.
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Affiliation(s)
- Christine Rascle
- Univ Lyon, Université Lyon 1, CNRS, Bayer SAS, UMR5240, Microbiologie, Adaptation, Pathogénie, 14-18 impasse P. Baizet, F-69009, LYON, France
| | - Cindy Dieryckx
- Univ Lyon, Université Lyon 1, CNRS, Bayer SAS, UMR5240, Microbiologie, Adaptation, Pathogénie, 14-18 impasse P. Baizet, F-69009, LYON, France
| | - Jean William Dupuy
- Plateforme protéome, Centre de Génomique Fonctionnelle, Université de Bordeaux, Bordeaux, France
| | - Laetitia Muszkieta
- Univ Lyon, Université Lyon 1, CNRS, Bayer SAS, UMR5240, Microbiologie, Adaptation, Pathogénie, 14-18 impasse P. Baizet, F-69009, LYON, France
| | - Eytham Souibgui
- Univ Lyon, Université Lyon 1, CNRS, Bayer SAS, UMR5240, Microbiologie, Adaptation, Pathogénie, 14-18 impasse P. Baizet, F-69009, LYON, France
| | - Michel Droux
- Univ Lyon, Université Lyon 1, CNRS, Bayer SAS, UMR5240, Microbiologie, Adaptation, Pathogénie, 14-18 impasse P. Baizet, F-69009, LYON, France
| | - Christophe Bruel
- Univ Lyon, Université Lyon 1, CNRS, Bayer SAS, UMR5240, Microbiologie, Adaptation, Pathogénie, 14-18 impasse P. Baizet, F-69009, LYON, France
| | - Vincent Girard
- Univ Lyon, Université Lyon 1, CNRS, Bayer SAS, UMR5240, Microbiologie, Adaptation, Pathogénie, 14-18 impasse P. Baizet, F-69009, LYON, France
| | - Nathalie Poussereau
- Univ Lyon, Université Lyon 1, CNRS, Bayer SAS, UMR5240, Microbiologie, Adaptation, Pathogénie, 14-18 impasse P. Baizet, F-69009, LYON, France
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Xu L, Li G, Jiang D, Chen W. Sclerotinia sclerotiorum: An Evaluation of Virulence Theories. ANNUAL REVIEW OF PHYTOPATHOLOGY 2018; 56:311-338. [PMID: 29958073 DOI: 10.1146/annurev-phyto-080417-050052] [Citation(s) in RCA: 59] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Oxalic acid production in Sclerotinia sclerotiorum has long been associated with virulence. Research involving UV-induced, genetically undefined mutants that concomitantly lost oxalate accumulation, sclerotial formation, and pathogenicity supported the conclusion that oxalate is an essential pathogenicity determinant of S. sclerotiorum. However, recent investigations showed that genetically defined mutants that lost oxalic acid production but accumulated fumaric acid could cause disease on many plants and substantiated the conclusion that acidic pH, not oxalic acid per se, is the necessary condition for disease development. Critical evaluation of available evidence showed that the UV-induced mutants harbored previously unrecognized confounding genetic defects in saprophytic growth and pH responsiveness, warranting reevaluation of the conclusions about virulence based on the UV-induced mutants. Furthermore, analyses of the evidence suggested a hypothesis for the existence of an unrecognized regulator responsive to acidic pH. Identifying the unknown pH regulator would offer a new avenue for investigating pH sensing/regulation in S. sclerotiorum and novel targets for intervention in disease control strategies.
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Affiliation(s)
- Liangsheng Xu
- State Key Laboratory of Crop Stress Biology for Arid Areas and College of Plant Protection, Northwest A&F University, Yangling 712100, Shaanxi, People's Republic of China
| | - Guoqing Li
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, People's Republic of China
- The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, People's Republic of China
| | - Daohong Jiang
- State Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, People's Republic of China
- The Provincial Key Lab of Plant Pathology of Hubei Province, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan 430070, Hubei Province, People's Republic of China
| | - Weidong Chen
- Grain Legume Genetics and Physiology Research Unit, US Department of Agriculture, Agricultural Research Service, Washington State University, Pullman, Washington 99164, USA
- Departments of Plant Pathology and Molecular Plant Sciences Program, Washington State University, Pullman, Washington 99164, USA;
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Wu Y, Yin Z, Xu L, Feng H, Huang L. VmPacC Is Required for Acidification and Virulence in Valsa mali. Front Microbiol 2018; 9:1981. [PMID: 30190714 PMCID: PMC6115506 DOI: 10.3389/fmicb.2018.01981] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2018] [Accepted: 08/06/2018] [Indexed: 11/18/2022] Open
Abstract
The role of the transcription factor PacC has been characterised in several pathogenic fungi, and it affects virulence via several mechanisms. In this study, we examined the role of the PacC homolog VmPacC in Valsa mali, the causal agent of apple canker disease. We found that the expression of VmPacC was up-regulated in neutral and alkaline pH and during infection. At pH 6–10, the radial growth of a VmPacC deletion mutant decreased compared to wild-type. In addition, the sensitivity to oxidative stress of the VmPacC deletion mutant was impaired, as its growth was more severely inhibited by H2O2 than that of the wild-type. The lesion size caused by the VmPacC deletion mutant was smaller than that of the wild-type on apple leaves and twigs. Interestingly, expression of pectinase genes increased in deletion mutant during infection. To further confirm the negative regulation, we generated dominant activated C-27 allele mutants that constitutively express VmPacC. The pectinase activity of activated mutants was reduced at pH 4. We further observed that V. mali can acidify the pH during infection, and that the capacity for acidification was impaired after VmPacC deletion. Furthermore, VmPacC is involved in the generation of citric acid, which affects virulence. These results indicate that VmPacC is part of the fungal responses to neutral and alkaline pH and oxidative stress. More importantly, VmPacC is required for acidification of its environment and for full virulence in V. mali.
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Affiliation(s)
- Yuxing Wu
- State Key Laboratory of Crop Stress Biology for Arid Areas, China-Australia Joint Research Centre for Abiotic and Biotic Stress Management, College of Plant Protection, Northwest A&F University, Yangling, China
| | - Zhiyuan Yin
- State Key Laboratory of Crop Stress Biology for Arid Areas, China-Australia Joint Research Centre for Abiotic and Biotic Stress Management, College of Plant Protection, Northwest A&F University, Yangling, China
| | - Liangsheng Xu
- State Key Laboratory of Crop Stress Biology for Arid Areas, China-Australia Joint Research Centre for Abiotic and Biotic Stress Management, College of Plant Protection, Northwest A&F University, Yangling, China
| | - Hao Feng
- State Key Laboratory of Crop Stress Biology for Arid Areas, China-Australia Joint Research Centre for Abiotic and Biotic Stress Management, College of Plant Protection, Northwest A&F University, Yangling, China
| | - Lili Huang
- State Key Laboratory of Crop Stress Biology for Arid Areas, China-Australia Joint Research Centre for Abiotic and Biotic Stress Management, College of Plant Protection, Northwest A&F University, Yangling, China
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Liang X, Wang B, Dong Q, Li L, Rollins JA, Zhang R, Sun G. Pathogenic adaptations of Colletotrichum fungi revealed by genome wide gene family evolutionary analyses. PLoS One 2018; 13:e0196303. [PMID: 29689067 PMCID: PMC5915685 DOI: 10.1371/journal.pone.0196303] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2018] [Accepted: 04/10/2018] [Indexed: 11/19/2022] Open
Abstract
The fungal genus Colletotrichum contains hemibiotrophic phytopathogens being highly variable in host and tissue specificities. We sequenced a C. fructicola genome (1104–7) derived from an isolate of apple in China and compared it with the reference genome (Nara_gc5) derived from an isolate of strawberry in Japan. Mauve alignment and BlastN search identified 0.62 Mb lineage-specific (LS) genomic regions in 1104–7 with a length criterion of 10 kb. Genes located within LS regions evolved more dynamically, and a strongly elevated proportion of genes were closely related to non-Colletotrichum sequences. Two LS regions, containing nine genes in total, showed features of fungus-to-fungus horizontal transfer supported by both gene order collinearity and gene phylogeny patterns. We further compared the gene content variations among 13 Colletotrichum and 11 non-Colletotrichum genomes by gene function annotation, OrthoMCL grouping and CAFE analysis. The results provided a global evolutionary picture of Colletotrichum gene families, and identified a number of strong duplication/loss events at key phylogenetic nodes, such as the contraction of the detoxification-related RTA1 family in the monocot-specializing graminicola complex and the expansions of several ammonia production-related families in the fruit-infecting gloeosporioides complex. We have also identified the acquirement of a RbsD/FucU fucose transporter from bacterium by the Colletotrichum ancestor. In sum, this study summarized the pathogenic evolutionary features of Colletotrichum fungi at multiple taxonomic levels and highlights the concept that the pathogenic successes of Colletotrichum fungi require shared as well as lineage-specific virulence factors.
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Affiliation(s)
- Xiaofei Liang
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China
| | - Bo Wang
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China
| | - Qiuyue Dong
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China
| | - Lingnan Li
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China
| | - Jeffrey A. Rollins
- Department of Plant Pathology, University of Florida, Gainesville, United States of America
| | - Rong Zhang
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China
- * E-mail: (RZ); (GS)
| | - Guangyu Sun
- State Key Laboratory of Crop Stress Biology in Arid Areas and College of Plant Protection, Northwest A&F University, Yangling, Shaanxi Province, China
- * E-mail: (RZ); (GS)
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Zhang W, Gui Y, Short DPG, Li T, Zhang D, Zhou L, Liu C, Bao Y, Subbarao KV, Chen J, Dai X. Verticillium dahliae transcription factor VdFTF1 regulates the expression of multiple secreted virulence factors and is required for full virulence in cotton. MOLECULAR PLANT PATHOLOGY 2018; 19:841-857. [PMID: 28520093 PMCID: PMC6638078 DOI: 10.1111/mpp.12569] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2017] [Revised: 04/11/2017] [Accepted: 05/13/2017] [Indexed: 05/05/2023]
Abstract
Fungal transcription factors (TFs) implicated in the regulation of virulence gene expression have been identified in a number of plant pathogens. In Verticillium dahliae, despite its agricultural importance, few regulators of transcription have been characterized. In this study, a T-DNA insertion mutant with significantly reduced virulence towards cotton was identified. The T-DNA was traced to VdFTF1, a gene encoding a TF containing a Fungal_trans domain. Transient expression in onion epidermal cells indicated that VdFTF1 is localized to the nucleus. The VdFTF1-deletion strains displayed normal vegetative growth, mycelial pigmentation and conidial morphology, but exhibited significantly reduced virulence on cotton, suggesting that VdFTF1 is required exclusively for pathogenesis. Comparisons of global transcription patterns of wild-type and VdFTF1-deletion strains indicated that VdFTF1 affected the expression of 802 genes, 233 of which were associated with catalytic processes. These genes encoded 69 potentially secreted proteins, 43 of which contained a carbohydrate enzyme domain known to participate in pathogenesis during infection of cotton. Targeted gene deletion of one VdFTF1-regulated gene resulted in significantly impaired vascular colonization, as measured by quantitative polymerase chain reaction, as well as aggressiveness and symptom severity in cotton. In conclusion, VdFTF1, which encodes a TF containing a Fungal_trans domain, regulates the gene expression of plant cell wall degradation enzymes in V. dahliae, which are required for full virulence on cotton.
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Affiliation(s)
- Wen‐Qi Zhang
- Laboratory of Cotton Disease, Institute of Food Science and TechnologyChinese Academy of Agricultural SciencesBeijing 100193China
| | - Yue‐Jing Gui
- Laboratory of Cotton Disease, Institute of Food Science and TechnologyChinese Academy of Agricultural SciencesBeijing 100193China
| | - Dylan P. G. Short
- Department of Plant PathologyUniversity of CaliforniaDavisCA 95616USA
| | - Ting‐Gang Li
- Laboratory of Cotton Disease, Institute of Food Science and TechnologyChinese Academy of Agricultural SciencesBeijing 100193China
| | - Dan‐Dan Zhang
- Laboratory of Cotton Disease, Institute of Food Science and TechnologyChinese Academy of Agricultural SciencesBeijing 100193China
| | - Lei Zhou
- Laboratory of Cotton Disease, Institute of Food Science and TechnologyChinese Academy of Agricultural SciencesBeijing 100193China
| | - Chun Liu
- BGI‐ShenzhenShenzhenGuangdong 518083China
| | - Yu‐Ming Bao
- Laboratory of Cotton Disease, Institute of Food Science and TechnologyChinese Academy of Agricultural SciencesBeijing 100193China
| | | | - Jie‐Yin Chen
- Laboratory of Cotton Disease, Institute of Food Science and TechnologyChinese Academy of Agricultural SciencesBeijing 100193China
| | - Xiao‐Feng Dai
- Laboratory of Cotton Disease, Institute of Food Science and TechnologyChinese Academy of Agricultural SciencesBeijing 100193China
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Baroncelli R, Talhinhas P, Pensec F, Sukno SA, Le Floch G, Thon MR. The Colletotrichum acutatum Species Complex as a Model System to Study Evolution and Host Specialization in Plant Pathogens. Front Microbiol 2017; 8:2001. [PMID: 29075253 PMCID: PMC5641571 DOI: 10.3389/fmicb.2017.02001] [Citation(s) in RCA: 37] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2017] [Accepted: 09/28/2017] [Indexed: 11/28/2022] Open
Abstract
Colletotrichum spp. infect a wide diversity of hosts, causing plant diseases on many economically important crops worldwide. The genus contains approximately 189 species organized into at least 11 major phylogenetic lineages, also known as species complexes. The Colletotrichum acutatum species complex is a diverse yet relatively closely related group of plant pathogenic fungi within this genus. Within the species complex we find a wide diversity of important traits such as host range and host preference, mode of reproduction and differences in the strategy used to infect their hosts. Research on fungal comparative genomics have attempted to find correlations in these traits and patterns of gene family evolution but such studies typically compare fungi from different genera or even different fungal Orders. The C. acutatum species complex contains most of this diversity within a group of relatively closely related species. This Perspective article presents a review of the current knowledge on C. acutatum phylogeny, biology, and pathology. It also demonstrates the suitability of C. acutatum for the study of gene family evolution on a fine scale to uncover evolutionary events in the genome that are associated with the evolution of phenotypic characters important for host interactions.
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Affiliation(s)
- Riccardo Baroncelli
- Laboratoire Universitaire de Biodiversité et Écologie Microbienne, ESIAB, Université de Brest, Plouzané, France
| | - Pedro Talhinhas
- Linking Landscape, Environment, Agriculture and Food, Instituto Superior de Agronomia, Universidade de Lisboa, Lisbon, Portugal
| | - Flora Pensec
- Laboratoire Universitaire de Biodiversité et Écologie Microbienne, ESIAB, Université de Brest, Plouzané, France
| | - Serenella A. Sukno
- Instituto Hispano-Luso de Investigaciones Agrarias, Department of Microbiology and Genetics, University of Salamanca, Salamanca, Spain
| | - Gaetan Le Floch
- Laboratoire Universitaire de Biodiversité et Écologie Microbienne, ESIAB, Université de Brest, Plouzané, France
| | - Michael R. Thon
- Instituto Hispano-Luso de Investigaciones Agrarias, Department of Microbiology and Genetics, University of Salamanca, Salamanca, Spain
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Barad S, Sela N, Dubey AK, Kumar D, Luria N, Ment D, Cohen S, Schaffer AA, Prusky D. Differential gene expression in tomato fruit and Colletotrichum gloeosporioides during colonization of the RNAi-SlPH tomato line with reduced fruit acidity and higher pH. BMC Genomics 2017; 18:579. [PMID: 28778147 PMCID: PMC5545021 DOI: 10.1186/s12864-017-3961-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2016] [Accepted: 07/25/2017] [Indexed: 01/15/2023] Open
Abstract
Background The destructive phytopathogen Colletotrichum gloeosporioides causes anthracnose disease in fruit. During host colonization, it secretes ammonia, which modulates environmental pH and regulates gene expression, contributing to pathogenicity. However, the effect of host pH environment on pathogen colonization has never been evaluated. Development of an isogenic tomato line with reduced expression of the gene for acidity, SlPH (Solyc10g074790.1.1), enabled this analysis. Total RNA from C. gloeosporioides colonizing wild-type (WT) and RNAi–SlPH tomato lines was sequenced and gene-expression patterns were compared. Results C. gloeosporioides inoculation of the RNAi–SlPH line with pH 5.96 compared to the WT line with pH 4.2 showed 30% higher colonization and reduced ammonia accumulation. Large-scale comparative transcriptome analysis of the colonized RNAi–SlPH and WT lines revealed their different mechanisms of colonization-pattern activation: whereas the WT tomato upregulated 13-LOX (lipoxygenase), jasmonic acid and glutamate biosynthesis pathways, it downregulated processes related to chlorogenic acid biosynthesis II, phenylpropanoid biosynthesis and hydroxycinnamic acid tyramine amide biosynthesis; the RNAi–SlPH line upregulated UDP-D-galacturonate biosynthesis I and free phenylpropanoid acid biosynthesis, but mainly downregulated pathways related to sugar metabolism, such as the glyoxylate cycle and L-arabinose degradation II. Comparison of C. gloeosporioides gene expression during colonization of the WT and RNAi–SlPH lines showed that the fungus upregulates ammonia and nitrogen transport and the gamma-aminobutyric acid metabolic process during colonization of the WT, while on the RNAi–SlPH tomato, it mainly upregulates the nitrate metabolic process. Conclusions Modulation of tomato acidity and pH had significant phenotypic effects on C. gloeosporioides development. The fungus showed increased colonization on the neutral RNAi–SlPH fruit, and limited colonization on the WT acidic fruit. The change in environmental pH resulted in different defense responses for the two tomato lines. Interestingly, the WT line showed upregulation of jasmonate pathways and glutamate accumulation, supporting the reduced symptom development and increased ammonia accumulation, as the fungus might utilize glutamate to accumulate ammonia and increase environmental pH for better expression of pathogenicity factors. This was not found in the RNAi–SlPH line which downregulated sugar metabolism and upregulated the phenylpropanoid pathway, leading to host susceptibility. Electronic supplementary material The online version of this article (doi:10.1186/s12864-017-3961-6) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Shiri Barad
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel.,Department of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, 76100, Rehovot, Israel
| | - Noa Sela
- Department of Plant Pathology and Weed Research, ARO, the Volcani Center, 50250, Bet Dagan, Israel
| | - Amit K Dubey
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel
| | - Dilip Kumar
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel
| | - Neta Luria
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel
| | - Dana Ment
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel
| | - Shahar Cohen
- Department of Plant Sciences, Agricultural Research Organization, the Volcani Center, 50250, Bet Dagan, Israel
| | - Arthur A Schaffer
- Department of Plant Sciences, Agricultural Research Organization, the Volcani Center, 50250, Bet Dagan, Israel
| | - Dov Prusky
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, the Volcani Center, 7505101, Rishon LeZion, Israel.
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44
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Simkovitch R, Gajst O, Zelinger E, Yarden O, Huppert D. Irradiation by blue light in the presence of a photoacid confers changes to colony morphology of the plant pathogen Colletotrichum gloeosporioides. JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY 2017; 174:1-9. [PMID: 28738309 DOI: 10.1016/j.jphotobiol.2017.06.041] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2017] [Revised: 06/26/2017] [Accepted: 06/27/2017] [Indexed: 11/26/2022]
Abstract
We used the photoacid 8-hydroxy-1,3,6-pyrenetrisulfonate (HPTS) that converts blue photons to acidic protons in water, with an efficiency of close to 100%, and determined that this treatment conferred changes to colony morphology of the plant pathogen Colletotrichum gloeosporioides. The time elapsed until hyphal collapse is noticed depends on both the laser intensity in mW/cm2, and the concentration of HPTS in the Agar hydrogel. The time elapsed until hyphal collapse is noticed varies by only ±8% at HPTS concentrations of 500μM and at lower concentrations of HPTS the variance increases as the inverse of the concentration. We found that the effect on C. gloeosporioides was photoacid concentration and irradiation dose dependent. In the presence of 500μM of HPTS within the agar hydrogel-based medium, hyphae collapsed after 37±3.5min of irradiation at 405nm at an intensity of 25mW/cm2. We propose two mechanisms for such photo-alteration of C. gloeosporioides. One is based on the pH drop in the extracellular environment by the photo-protolytic process that the photoacid molecule undergoes. The second mechanism is based on an intracellular mechanism in which there is an uptake of HPTS into the interior of the fungus. We suggest that both mechanisms for photo-alteration which we found in this study may occur in plants during fungal infection.
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Affiliation(s)
- Ron Simkovitch
- Raymond and Beverly Sackler Faculty of Exact Sciences, School of Chemistry, Tel Aviv University, Tel Aviv 69978, Israel
| | - Oren Gajst
- Raymond and Beverly Sackler Faculty of Exact Sciences, School of Chemistry, Tel Aviv University, Tel Aviv 69978, Israel
| | - Einat Zelinger
- The Department of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel
| | - Oded Yarden
- The Department of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel
| | - Dan Huppert
- Raymond and Beverly Sackler Faculty of Exact Sciences, School of Chemistry, Tel Aviv University, Tel Aviv 69978, Israel.
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45
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Li X, Wu Y, Liu Z, Zhang C. The function and transcriptome analysis of a bZIP transcription factor CgAP1 in Colletotrichum gloeosporioides. Microbiol Res 2017; 197:39-48. [PMID: 28219524 DOI: 10.1016/j.micres.2017.01.006] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Revised: 12/10/2016] [Accepted: 01/19/2017] [Indexed: 02/06/2023]
Abstract
Colletotrichum gloeosporioides is an important pathogen of anthracnose, which is able to infect numerous crops in tropical and subtropical regions, causing great economic losses. To investigate the fungal response to host-generated reactive oxygen species (ROS), we cloned and characterized the CgAP1 gene of C. gloeosporioides. CgAP1 encoded a bZIP transcription factor which had a bZIP DNA-binding domain and two cysteine-rich domains structurally and functionally related to Saccharomyces cerevisiae YAP1. Deletion of CgAP1 in C. gloeosporioides resulted in increasing sensitivity to H2O2, changes in cell wall integrity and loss of pathogenicity. To understand the regulatory network of CgAP1, RNA sequencing was used to identify differentially expressed genes in the CgAP1 mutant. It was shown that several genes involved in ROS detoxification and cell wall integrity were affected by CgAP1. Moreover, CgAP1 was also involved in many biological processes especially ribosome, cellular transport and amino acid metabolism. In conclusion, CgAP1 is an important transcription factor involved in oxidative stress, cell wall integrity and pathogenicity in C. gloeosporioides.
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Affiliation(s)
- Xiaoyu Li
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, China
| | - Yateng Wu
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, China
| | - Zhiqiang Liu
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, China.
| | - Chenghui Zhang
- Institute of Tropical Agriculture and Forestry, Hainan University, Haikou, China
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46
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Campos Antoniêto AC, Ramos Pedersoli W, dos Santos Castro L, da Silva Santos R, Cruz AHDS, Nogueira KMV, Silva-Rocha R, Rossi A, Silva RN. Deletion of pH Regulator pac-3 Affects Cellulase and Xylanase Activity during Sugarcane Bagasse Degradation by Neurospora crassa. PLoS One 2017; 12:e0169796. [PMID: 28107376 PMCID: PMC5249074 DOI: 10.1371/journal.pone.0169796] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2016] [Accepted: 12/21/2016] [Indexed: 11/18/2022] Open
Abstract
Microorganisms play a vital role in bioethanol production whose usage as fuel energy is increasing worldwide. The filamentous fungus Neurospora crassa synthesize and secrete the major enzymes involved in plant cell wall deconstruction. The production of cellulases and hemicellulases is known to be affected by the environmental pH; however, the regulatory mechanisms of this process are still poorly understood. In this study, we investigated the role of the pH regulator PAC-3 in N. crassa during their growth on sugarcane bagasse at different pH conditions. Our data indicate that secretion of cellulolytic enzymes is reduced in the mutant Δpac-3 at alkaline pH, whereas xylanases are positively regulated by PAC-3 in acidic (pH 5.0), neutral (pH 7.0), and alkaline (pH 10.0) medium. Gene expression profiles, evaluated by real-time qPCR, revealed that genes encoding cellulases and hemicellulases are also subject to PAC-3 control. Moreover, deletion of pac-3 affects the expression of transcription factor-encoding genes. Together, the results suggest that the regulation of holocellulase genes by PAC-3 can occur as directly as in indirect manner. Our study helps improve the understanding of holocellulolytic performance in response to PAC-3 and should thereby contribute to the better use of N. crassa in the biotechnology industry.
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Affiliation(s)
- Amanda Cristina Campos Antoniêto
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil
| | - Wellington Ramos Pedersoli
- Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil
| | - Lílian dos Santos Castro
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil
| | - Rodrigo da Silva Santos
- Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil
| | - Aline Helena da Silva Cruz
- Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil
| | - Karoline Maria Vieira Nogueira
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil
| | - Rafael Silva-Rocha
- Systems and Synthetic Biology Laboratory, Department of Cell and Molecular Biology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, Brazil
| | - Antonio Rossi
- Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil
| | - Roberto Nascimento Silva
- Department of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, São Paulo, Brazil
- * E-mail:
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47
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Valueva TA, Zaichik BT, Kudryavtseva NN. Role of proteolytic enzymes in the interaction of phytopathogenic microorganisms with plants. BIOCHEMISTRY (MOSCOW) 2017; 81:1709-1718. [DOI: 10.1134/s0006297916130083] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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48
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Sbaraini N, Guedes RLM, Andreis FC, Junges Â, de Morais GL, Vainstein MH, de Vasconcelos ATR, Schrank A. Secondary metabolite gene clusters in the entomopathogen fungus Metarhizium anisopliae: genome identification and patterns of expression in a cuticle infection model. BMC Genomics 2016; 17:736. [PMID: 27801295 PMCID: PMC5088523 DOI: 10.1186/s12864-016-3067-6] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022] Open
Abstract
Background The described species from the Metarhizium genus are cosmopolitan fungi that infect arthropod hosts. Interestingly, while some species infect a wide range of hosts (host-generalists), other species infect only a few arthropods (host-specialists). This singular evolutionary trait permits unique comparisons to determine how pathogens and virulence determinants emerge. Among the several virulence determinants that have been described, secondary metabolites (SMs) are suggested to play essential roles during fungal infection. Despite progress in the study of pathogen-host relationships, the majority of genes related to SM production in Metarhizium spp. are uncharacterized, and little is known about their genomic organization, expression and regulation. To better understand how infection conditions may affect SM production in Metarhizium anisopliae, we have performed a deep survey and description of SM biosynthetic gene clusters (BGCs) in M. anisopliae, analyzed RNA-seq data from fungi grown on cattle-tick cuticles, evaluated the differential expression of BGCs, and assessed conservation among the Metarhizium genus. Furthermore, our analysis extended to the construction of a phylogeny for the following three BGCs: a tropolone/citrinin-related compound (MaPKS1), a pseurotin-related compound (MaNRPS-PKS2), and a putative helvolic acid (MaTERP1). Results Among 73 BGCs identified in M. anisopliae, 20 % were up-regulated during initial tick cuticle infection and presumably possess virulence-related roles. These up-regulated BGCs include known clusters, such as destruxin, NG39x and ferricrocin, together with putative helvolic acid and, pseurotin and tropolone/citrinin-related compound clusters as well as uncharacterized clusters. Furthermore, several previously characterized and putative BGCs were silent or down-regulated in initial infection conditions, indicating minor participation over the course of infection. Interestingly, several up-regulated BGCs were not conserved in host-specialist species from the Metarhizium genus, indicating differences in the metabolic strategies employed by generalist and specialist species to overcome and kill their host. These differences in metabolic potential may have been partially shaped by horizontal gene transfer (HGT) events, as our phylogenetic analysis provided evidence that the putative helvolic acid cluster in Metarhizium spp. originated from an HGT event. Conclusions Several unknown BGCs are described, and aspects of their organization, regulation and origin are discussed, providing further support for the impact of SM on the Metarhizium genus lifestyle and infection process. Electronic supplementary material The online version of this article (doi:10.1186/s12864-016-3067-6) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Nicolau Sbaraini
- Rede Avançada em Biologia Computacional, RABICÓ, Petrópolis, RJ, Brazil.,Centro de Biotecnologia, Programa de Pós-graduação em Biologia Celular e Molecular, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Rafael Lucas Muniz Guedes
- Rede Avançada em Biologia Computacional, RABICÓ, Petrópolis, RJ, Brazil.,Laboratório Nacional de Computação Científica, LNCC, Petrópolis, RJ, Brazil
| | - Fábio Carrer Andreis
- Rede Avançada em Biologia Computacional, RABICÓ, Petrópolis, RJ, Brazil.,Centro de Biotecnologia, Programa de Pós-graduação em Biologia Celular e Molecular, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Ângela Junges
- Rede Avançada em Biologia Computacional, RABICÓ, Petrópolis, RJ, Brazil.,Centro de Biotecnologia, Programa de Pós-graduação em Biologia Celular e Molecular, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Guilherme Loss de Morais
- Rede Avançada em Biologia Computacional, RABICÓ, Petrópolis, RJ, Brazil.,Centro de Biotecnologia, Programa de Pós-graduação em Biologia Celular e Molecular, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil.,Laboratório Nacional de Computação Científica, LNCC, Petrópolis, RJ, Brazil
| | - Marilene Henning Vainstein
- Rede Avançada em Biologia Computacional, RABICÓ, Petrópolis, RJ, Brazil.,Centro de Biotecnologia, Programa de Pós-graduação em Biologia Celular e Molecular, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - Ana Tereza Ribeiro de Vasconcelos
- Rede Avançada em Biologia Computacional, RABICÓ, Petrópolis, RJ, Brazil.,Laboratório Nacional de Computação Científica, LNCC, Petrópolis, RJ, Brazil
| | - Augusto Schrank
- Rede Avançada em Biologia Computacional, RABICÓ, Petrópolis, RJ, Brazil. .,Centro de Biotecnologia, Programa de Pós-graduação em Biologia Celular e Molecular, Universidade Federal do Rio Grande do Sul, Porto Alegre, RS, Brazil.
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49
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Bi F, Barad S, Ment D, Luria N, Dubey A, Casado V, Glam N, Mínguez JD, Espeso EA, Fluhr R, Prusky D. Carbon regulation of environmental pH by secreted small molecules that modulate pathogenicity in phytopathogenic fungi. MOLECULAR PLANT PATHOLOGY 2016; 17:1178-95. [PMID: 26666972 PMCID: PMC6638356 DOI: 10.1111/mpp.12355] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2015] [Revised: 12/08/2015] [Accepted: 12/09/2015] [Indexed: 05/22/2023]
Abstract
Fruit pathogens can contribute to the acidification or alkalinization of the host environment. This capability has been used to divide fungal pathogens into acidifying and/or alkalinizing classes. Here, we show that diverse classes of fungal pathogens-Colletotrichum gloeosporioides, Penicillium expansum, Aspergillus nidulans and Fusarium oxysporum-secrete small pH-affecting molecules. These molecules modify the environmental pH, which dictates acidic or alkaline colonizing strategies, and induce the expression of PACC-dependent genes. We show that, in many organisms, acidification is induced under carbon excess, i.e. 175 mm sucrose (the most abundant sugar in fruits). In contrast, alkalinization occurs under conditions of carbon deprivation, i.e. less than 15 mm sucrose. The carbon source is metabolized by glucose oxidase (gox2) to gluconic acid, contributing to medium acidification, whereas catalysed deamination of non-preferred carbon sources, such as the amino acid glutamate, by glutamate dehydrogenase 2 (gdh2), results in the secretion of ammonia. Functional analyses of Δgdh2 mutants showed reduced alkalinization and pathogenicity during growth under carbon deprivation, but not in high-carbon medium or on fruit rich in sugar, whereas analysis of Δgox2 mutants showed reduced acidification and pathogencity under conditions of excess carbon. The induction pattern of gdh2 was negatively correlated with the expression of the zinc finger global carbon catabolite repressor creA. The present results indicate that differential pH modulation by fruit fungal pathogens is a host-dependent mechanism, affected by host sugar content, that modulates environmental pH to enhance fruit colonization.
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Affiliation(s)
- Fangcheng Bi
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center, Bet Dagan 50250, Israel
- Institute of Fruit Tree Research, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, and Key Laboratory of South Subtropical Fruit Biology and Genetic Resource Utilization, Ministry of Agriculture, Guangzhou, 510640, China
| | - Shiri Barad
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center, Bet Dagan 50250, Israel
- Department of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel
| | - Dana Ment
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center, Bet Dagan 50250, Israel
| | - Neta Luria
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center, Bet Dagan 50250, Israel
| | - Amit Dubey
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center, Bet Dagan 50250, Israel
| | - Virginia Casado
- Department of Microbiology and Genetics, CIALE, Universidad de Salamanca, Salamanca, 37007, Spain
| | - Nofar Glam
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center, Bet Dagan 50250, Israel
- Department of Plant Pathology and Microbiology, The Robert H. Smith Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem, Rehovot, 76100, Israel
| | - Jose Diaz Mínguez
- Department of Microbiology and Genetics, CIALE, Universidad de Salamanca, Salamanca, 37007, Spain
| | - Eduardo A Espeso
- Department of Molecular and Cellular Biology, Centro de Investigaciones Biológicas (C.I.B.), Madrid, 28040, Spain
| | - Robert Fluhr
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Dov Prusky
- Department of Postharvest Science of Fresh Produce, Agricultural Research Organization, The Volcani Center, Bet Dagan 50250, Israel.
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50
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Wang LJ, Sun XW, Guo FY, Zhao YJ, Zhang JH, Zhao ZQ. Transcriptome analysis of the uniparous and multiparous goats ovaries. Reprod Domest Anim 2016; 51:877-885. [DOI: 10.1111/rda.12750] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2016] [Accepted: 07/09/2016] [Indexed: 01/03/2023]
Affiliation(s)
- LJ Wang
- Chongqing Engineering Research Center for Herbivores Resource Protection and Utilisation; Southwest University; Chongqing China
| | - XW Sun
- Chongqing Engineering Research Center for Herbivores Resource Protection and Utilisation; Southwest University; Chongqing China
| | - FY Guo
- Chongqing Engineering Research Center for Herbivores Resource Protection and Utilisation; Southwest University; Chongqing China
| | - YJ Zhao
- Chongqing Engineering Research Center for Herbivores Resource Protection and Utilisation; Southwest University; Chongqing China
| | - JH Zhang
- Chongqing Engineering Research Center for Herbivores Resource Protection and Utilisation; Southwest University; Chongqing China
| | - ZQ Zhao
- Chongqing Engineering Research Center for Herbivores Resource Protection and Utilisation; Southwest University; Chongqing China
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