1
|
Hayashibara CADA, Lopes MDS, Tobias PA, dos Santos IB, Figueredo EF, Ferrarezi JA, Marques JPR, Marcon J, Park RF, Teixeira PJPL, Quecine MC. In Planta Study Localizes an Effector Candidate from Austropuccinia psidii Strain MF-1 to the Nucleus and Demonstrates In Vitro Cuticular Wax-Dependent Differential Expression. J Fungi (Basel) 2023; 9:848. [PMID: 37623619 PMCID: PMC10455828 DOI: 10.3390/jof9080848] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 07/21/2023] [Accepted: 07/25/2023] [Indexed: 08/26/2023] Open
Abstract
Austropuccinia psidii is a biotrophic fungus that causes myrtle rust. First described in Brazil, it has since spread to become a globally important pathogen that infects more than 480 myrtaceous species. One of the most important commercial crops affected by A. psidii is eucalypt, a widely grown forestry tree. The A. psidii-Eucalyptus spp. interaction is poorly understood, but pathogenesis is likely driven by pathogen-secreted effector molecules. Here, we identified and characterized a total of 255 virulence effector candidates using a genome assembly of A. psidii strain MF-1, which was recovered from Eucalyptus grandis in Brazil. We show that the expression of seven effector candidate genes is modulated by cell wax from leaves sourced from resistant and susceptible hosts. Two effector candidates with different subcellular localization predictions, and with specific gene expression profiles, were transiently expressed with GFP-fusions in Nicotiana benthamiana leaves. Interestingly, we observed the accumulation of an effector candidate, Ap28303, which was upregulated under cell wax from rust susceptible E. grandis and described as a peptidase inhibitor I9 domain-containing protein in the nucleus. This was in accordance with in silico analyses. Few studies have characterized nuclear effectors. Our findings open new perspectives on the study of A. psidii-Eucalyptus interactions by providing a potential entry point to understand how the pathogen manipulates its hosts in modulating physiology, structure, or function with effector proteins.
Collapse
Affiliation(s)
- Carolina Alessandra de Almeida Hayashibara
- Department of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil; (C.A.d.A.H.); (M.d.S.L.); (I.B.d.S.); (J.A.F.); (J.M.)
| | - Mariana da Silva Lopes
- Department of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil; (C.A.d.A.H.); (M.d.S.L.); (I.B.d.S.); (J.A.F.); (J.M.)
| | - Peri A. Tobias
- School of Life and Environmental Sciences, The University of Sydney, Camperdown, NSW 2006, Australia;
| | - Isaneli Batista dos Santos
- Department of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil; (C.A.d.A.H.); (M.d.S.L.); (I.B.d.S.); (J.A.F.); (J.M.)
| | | | - Jessica Aparecida Ferrarezi
- Department of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil; (C.A.d.A.H.); (M.d.S.L.); (I.B.d.S.); (J.A.F.); (J.M.)
| | - João Paulo Rodrigues Marques
- Department of Basic Sciences, Faculty of Animal Science and Food Engineering, University of São Paulo, Pirassununga 13635-900, SP, Brazil;
| | - Joelma Marcon
- Department of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil; (C.A.d.A.H.); (M.d.S.L.); (I.B.d.S.); (J.A.F.); (J.M.)
| | - Robert F. Park
- School of Life and Environmental Sciences, Plant Breeding Institute, The University of Sydney, Cobbitty, NSW 2570, Australia;
| | - Paulo José Pereira Lima Teixeira
- Department of Biological Sciences, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil;
| | - Maria Carolina Quecine
- Department of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba 13418-900, SP, Brazil; (C.A.d.A.H.); (M.d.S.L.); (I.B.d.S.); (J.A.F.); (J.M.)
| |
Collapse
|
2
|
Gonçalves MP, Nogueira Júnior AF, Ribeiro RV, Amorim L. Monocyclic Components and Photosynthetic Damage Caused by Myrtle Rust in Guava Leaves. PHYTOPATHOLOGY 2022; 112:1467-1475. [PMID: 35050681 DOI: 10.1094/phyto-11-21-0480-r] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Austropuccinia psidii, the causal agent of myrtle rust, was, for many years, restricted to the Americas, but since reaching Hawaii in 2005, the pathogen has expanded its global range exponentially. In Brazil, myrtle rust is the main fungal disease in guava plants. Despite this, there are few studies on guava rust epidemiology. The objectives of this study were to quantify the monocyclic components of rust and to evaluate the photosynthetic damage caused by A. psidii in young and old leaves of 'Paluma' guava. The monocyclic components of guava rust and gas exchange in healthy or inoculated (105 ml-1 urediniospores of A. psidii) leaves were quantified over time. Additionally, young leaves were inoculated with varying concentrations of A. psidii inoculum, and leaf gas exchange and chlorophyll fluorescence were measured at 25 days postinoculation. The relationship between the relative CO2 assimilation of a diseased leaf (Px) and a healthy leaf (Po) is related to disease severity (x) by Px/Po = (1 - x)β. The density of lesions, disease severity, and urediniospore production were high in young leaves, averaging 58 lesions cm-2, 50% leaf area diseased, and 2.5 × 104 urediniospores per lesion, respectively. Rust symptoms were not observed in old leaves, and resistance to infection did not cause any photosynthetic cost to these leaves. On young leaves, β was 2.13, indicating a reduction on CO2 assimilation at green tissues from symptomatic leaves. Our data revealed that photosynthesis reduction in diseased guava leaves was caused by biochemical and photochemical damage rather than by stomatal limitation.
Collapse
Affiliation(s)
- Manoel Penachio Gonçalves
- Department of Plant Pathology and Nematology, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, SP 13418-900, Brazil
| | - Antonio Fernandes Nogueira Júnior
- Department of Plant Pathology and Nematology, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, SP 13418-900, Brazil
| | - Rafael Vasconcelos Ribeiro
- Laboratory of Crop Physiology, Department of Plant Biology, Institute of Biology, University of Campinas, Campinas, SP 13083-970, Brazil
| | - Lilian Amorim
- Department of Plant Pathology and Nematology, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, SP 13418-900, Brazil
| |
Collapse
|
3
|
de Almeida JR, Riaño Pachón DM, Franceschini LM, dos Santos IB, Ferrarezi JA, de Andrade PAM, Monteiro-Vitorello CB, Labate CA, Quecine MC. Revealing the high variability on nonconserved core and mobile elements of Austropuccinia psidii and other rust mitochondrial genomes. PLoS One 2021; 16:e0248054. [PMID: 33705433 PMCID: PMC7951889 DOI: 10.1371/journal.pone.0248054] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Accepted: 02/18/2021] [Indexed: 01/12/2023] Open
Abstract
Mitochondrial genomes are highly conserved in many fungal groups, and they can help characterize the phylogenetic relationships and evolutionary biology of plant pathogenic fungi. Rust fungi are among the most devastating diseases for economically important crops around the world. Here, we report the complete sequence and annotation of the mitochondrial genome of Austropuccinia psidii (syn. Puccinia psidii), the causal agent of myrtle rust. We performed a phylogenomic analysis including the complete mitochondrial sequences from other rust fungi. The genome composed of 93.299 bp has 73 predicted genes, 33 of which encoded nonconserved proteins (ncORFs), representing almost 45% of all predicted genes. A. psidii mtDNA is one of the largest rust mtDNA sequenced to date, most likely due to the abundance of ncORFs. Among them, 33% were within intronic regions of diverse intron groups. Mobile genetic elements invading intron sequences may have played significant roles in size but not shaping of the rust mitochondrial genome structure. The mtDNAs from rust fungi are highly syntenic. Phylogenetic inferences with 14 concatenated mitochondrial proteins encoded by the core genes placed A. psidii according to phylogenetic analysis based on 18S rDNA. Interestingly, cox1, the gene with the greatest number of introns, provided phylogenies not congruent with the core set. For the first time, we identified the proteins encoded by three A. psidii ncORFs using proteomics analyses. Also, the orf208 encoded a transmembrane protein repressed during in vitro morphogenesis. To the best of our knowledge, we presented the first report of a complete mtDNA sequence of a member of the family Sphaerophragmiacea.
Collapse
Affiliation(s)
- Jaqueline Raquel de Almeida
- Department of Genetics, “Luiz de Queiroz” College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil
| | | | - Livia Maria Franceschini
- Department of Genetics, “Luiz de Queiroz” College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil
| | - Isaneli Batista dos Santos
- Department of Genetics, “Luiz de Queiroz” College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil
| | - Jessica Aparecida Ferrarezi
- Department of Genetics, “Luiz de Queiroz” College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil
| | - Pedro Avelino Maia de Andrade
- Department of Genetics, “Luiz de Queiroz” College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil
| | | | - Carlos Alberto Labate
- Department of Genetics, “Luiz de Queiroz” College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil
| | - Maria Carolina Quecine
- Department of Genetics, “Luiz de Queiroz” College of Agriculture (ESALQ), University of São Paulo, Piracicaba, São Paulo, Brazil
| |
Collapse
|
4
|
dos Santos IB, Lopes MDS, Bini AP, Tschoeke BAP, Verssani BAW, Figueredo EF, Cataldi TR, Marques JPR, Silva LD, Labate CA, Quecine MC. The Eucalyptus Cuticular Waxes Contribute in Preformed Defense Against Austropuccinia psidii. FRONTIERS IN PLANT SCIENCE 2019; 9:1978. [PMID: 30687371 PMCID: PMC6334236 DOI: 10.3389/fpls.2018.01978] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Accepted: 12/19/2018] [Indexed: 05/02/2023]
Abstract
Austropuccinia psidii, the causal agent of myrtle rust, is a biotrophic pathogen whose growth and development depends on the host tissues. The uredospores of A. psidii infect Eucalyptus by engaging in close contact with the host surface and interacting with the leaf cuticle that provides important chemical and physical signals to trigger the infection process. In this study, the cuticular waxes of Eucalyptus spp. were analyzed to determine their composition or structure and correlation with susceptibility/resistance to A. psidii. Twenty-one Eucalyptus spp. in the field were classified as resistant or susceptible. The resistance/susceptibility level of six Eucalyptus spp. were validated in controlled conditions using qPCR, revealing that the pathogen can germinate on the eucalyptus surface of some species without multiplying in the host. CG-TOF-MS analysis detected 26 compounds in the Eucalyptus spp. cuticle and led to the discovery of the role of hexadecanoic acid in the susceptibility of Eucalyptus grandis and Eucalyptus phaeotricha to A. psidii. We characterized the epicuticular wax morphology of the six previously selected Eucalyptus spp. using scanning electron microscopy and observed different behavior in A. psidii germination during host infection. It was found a correlation of epicuticular morphology on the resistance to A. psidii. However, in this study, we provide the first report of considerable interspecific variation in Eucalyptus spp. on the susceptibility to A. psidii and its correlation with cuticular waxes chemical compounds that seem to play a synergistic role as a preformed defense mechanism.
Collapse
Affiliation(s)
- Isaneli Batista dos Santos
- Departament of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Mariana da Silva Lopes
- Departament of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Andressa Peres Bini
- Departament of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba, Brazil
| | | | | | | | - Thais Regiani Cataldi
- Departament of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba, Brazil
| | - João Paulo Rodrigues Marques
- Departament of Phytopathology, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Luciana Duque Silva
- Departament of Forest Science, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Carlos Alberto Labate
- Departament of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba, Brazil
| | - Maria Carolina Quecine
- Departament of Genetics, “Luiz de Queiroz” College of Agriculture, University of São Paulo, Piracicaba, Brazil
| |
Collapse
|
5
|
Comparative Methods for Molecular Determination of Host-Specificity Factors in Plant-Pathogenic Fungi. Int J Mol Sci 2018; 19:ijms19030863. [PMID: 29543717 PMCID: PMC5877724 DOI: 10.3390/ijms19030863] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2018] [Revised: 03/12/2018] [Accepted: 03/14/2018] [Indexed: 12/11/2022] Open
Abstract
Many plant-pathogenic fungi are highly host-specific. In most cases, host-specific interactions evolved at the time of speciation of the respective host plants. However, host jumps have occurred quite frequently, and still today the greatest threat for the emergence of new fungal diseases is the acquisition of infection capability of a new host by an existing plant pathogen. Understanding the mechanisms underlying host-switching events requires knowledge of the factors determining host-specificity. In this review, we highlight molecular methods that use a comparative approach for the identification of host-specificity factors. These cover a wide range of experimental set-ups, such as characterization of the pathosystem, genotyping of host-specific strains, comparative genomics, transcriptomics and proteomics, as well as gene prediction and functional gene validation. The methods are described and evaluated in view of their success in the identification of host-specificity factors and the understanding of their functional mechanisms. In addition, potential methods for the future identification of host-specificity factors are discussed.
Collapse
|
6
|
Quecine MC, Leite TF, Bini AP, Regiani T, Franceschini LM, Budzinski IGF, Marques FG, Labate MTV, Guidetti-Gonzalez S, Moon DH, Labate CA. Label-Free Quantitative Proteomic Analysis of Puccinia psidii Uredospores Reveals Differences of Fungal Populations Infecting Eucalyptus and Guava. PLoS One 2016; 11:e0145343. [PMID: 26731728 PMCID: PMC4701387 DOI: 10.1371/journal.pone.0145343] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2015] [Accepted: 12/02/2015] [Indexed: 12/21/2022] Open
Abstract
Puccinia psidii sensu lato (s.l.) is the causal agent of eucalyptus and guava rust, but it also attacks a wide range of plant species from the myrtle family, resulting in a significant genetic and physiological variability among populations accessed from different hosts. The uredospores are crucial to P. psidii dissemination in the field. Although they are important for the fungal pathogenesis, their molecular characterization has been poorly studied. In this work, we report the first in-depth proteomic analysis of P. psidii s.l. uredospores from two contrasting populations: guava fruits (PpGuava) and eucalyptus leaves (PpEucalyptus). NanoUPLC-MSE was used to generate peptide spectra that were matched to the UniProt Puccinia genera sequences (UniProt database) resulting in the first proteomic analysis of the phytopathogenic fungus P. psidii. Three hundred and fourty proteins were detected and quantified using Label free proteomics. A significant number of unique proteins were found for each sample, others were significantly more or less abundant, according to the fungal populations. In PpGuava population, many proteins correlated with fungal virulence, such as malate dehydrogenase, proteossomes subunits, enolases and others were increased. On the other hand, PpEucalyptus proteins involved in biogenesis, protein folding and translocation were increased, supporting the physiological variability of the fungal populations according to their protein reservoirs and specific host interaction strategies.
Collapse
Affiliation(s)
- Maria Carolina Quecine
- Departament of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba -SP, Brazil
| | - Thiago Falda Leite
- Departament of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba -SP, Brazil
| | - Andressa Peres Bini
- Departament of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba -SP, Brazil
| | - Thais Regiani
- Departament of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba -SP, Brazil
| | - Lívia Maria Franceschini
- Departament of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba -SP, Brazil
| | | | - Felipe Garbelini Marques
- Departament of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba -SP, Brazil
| | - Mônica Teresa Veneziano Labate
- Departament of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba -SP, Brazil
| | - Simone Guidetti-Gonzalez
- Departament of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba -SP, Brazil
| | - David Henry Moon
- Departament of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba -SP, Brazil
| | - Carlos Alberto Labate
- Departament of Genetics, Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba -SP, Brazil
| |
Collapse
|