The Potential for Cereal Rye Cover Crops to Host Corn Seedling Pathogens

Disease Management in Regenerative Cropping in the Context of Climate Change and Regulatory Restrictions

Regenerative agriculture as a term and concept has gained much traction over recent years. Many farmers are convinced that by adopting these principles they will be able to address the triple crisis of biodiversity loss, climate change, and food security. However, the impact of regenerative agriculture practices on crop pathogens and their management has received little attention from the scientific community. Significant changes to cropping systems may result in certain diseases presenting more or less of a threat. Shifts in major diseases may have significant implications regarding optimal integrated pest management (IPM) strategies that aim to improve profitability and productivity in an environmentally sensitive manner. In particular, many aspects of regenerative agriculture change risk levels and risk management in ways that are central to effective IPM. This review outlines some of the challenges, gaps, and opportunities in our understanding of appropriate approaches for managing crop diseases in regenerative cropping systems.

Host Range Characterization of Phytophthora sansomeana Across Corn, Soybean, Wheat, Winter Cereal Rye, Dry Bean, and Oats and an In Vitro Assessment of Seed Treatment Sensitivity

Formally described in 2009, Phytophthora sansomeana is a pathogen of increasing interest in native, agricultural, and horticulturally important plant species. The objective of this study was to elucidate the symptomatic and asymptomatic host range of P. sansomeana on six agricultural crop species commonly used in field crop rotations in Michigan. In addition, sensitivity to oomicides commonly used in seed treatments, including oxathiapiprolin, mefenoxam, ethaboxam, and pyraclostrobin, was performed to aid in disease management recommendations. Plant biomass, quantity of P. sansomeana DNA in roots, and reisolations were used to assess pathogenicity and virulence of 18 isolates of P. sansomeana on each plant species using an inoculated seedling growth chamber assay. Isolates displayed varying levels of virulence to the hosts tested. Reisolations were completed for each plant species tested, and varying quantities of P. sansomeana DNA were found within all plant species root samples. Corn, wheat, soybean, dry bean, and winter cereal rye plants were symptomatic hosts with significant reduction observed in the total plant biomass. No significant reduction in total plant biomass was observed in oats, and oat roots harbored the least amount of P. sansomeana DNA. No P. sansomeana isolates were insensitive to the oomicide compounds tested with mean absolute inhibition (EC50) values of fungicide required for 50% growth inhibition values of 7.8 × 10-2 μg/ml for mefenoxam, 1.13 × 10-1 μg/ml for ethaboxam, 2.6 × 10-2 μg/ml for oxathiapiprolin, and 3.04 × 10-1 μg/ml for pyraclostrobin. These results suggest that common crop rotations in Michigan may not be a viable option to reduce soilborne inoculum accumulation and oomicide seed treatments could be considered for early-season management of P. sansomeana.

Variation in Pathogenicity and Subsequent Production of Sclerotia of Sclerotinia sclerotiorum Isolates in Different Cover Crops, Flower Strips, and Weeds

Cover crops and flower strips are used in agricultural fields as part of integrated pest management strategies. However, their potential as secondary hosts of soilborne pathogens such as Sclerotinia sclerotiorum in oilseed rape cultivation is not fully comprehended. In the current study, we evaluated the effect of pathogen virulence on the development of Sclerotinia stem/leaf rot and sclerotia production in 33 plant species from 11 botanical families using two S. sclerotiorum isolates. Furthermore, the effect of sclerotial size on carpogenic germination was studied. Results showed that the pathogen's virulence significantly affected the occurrence and development of Sclerotinia stem/leaf rot and the subsequent production of sclerotia. Among all plant species tested, 26 were more susceptible to the highly aggressive S. sclerotiorum isolate, which produced more and bigger sclerotia in 17 species than the less aggressive isolate. Moreover, a stronger positive correlation was found between the relative lesion length of plants inoculated with the highly aggressive isolate and the number of sclerotia produced by this isolate (Spearman's rank correlation coefficient [rs] = 0.572; P = 0.004). Additionally, we found that larger and heavier sclerotia produced stipes and apothecia earlier and at a greater rate than smaller ones. The heavyweight class had the highest carpogenic germination rate (82.4%), followed by the average (67.2%) and lightweight classes (59.5%). Our findings highlight the need for further investigation into the potential risks associated with cover crops, weeds, and flower strips as secondary hosts of soilborne pathogens in agricultural fields.

Evaluation of long-term impact of cereal rye as a winter cover crop in Illinois

Extensive tile drainage usage combined with excess nitrogen fertilization has triggered nutrient loss and water quality issues in Illinois, which over time endorsed the hypoxia formation in the Gulf of Mexico. Past research reported that the use of cereal rye as a winter cover crop (CC) could be beneficial in reducing nutrient loss and improving water quality. The extensive use of CC may aid in reducing the hypoxic zone in the Gulf of Mexico. The objective of this study is to analyze the long-term impact of cereal rye on soil water‑nitrogen (N) dynamics and cash crops growth in the maize-soybean agroecosystem in the state of Illinois. A gridded simulation approach was developed using the DSSAT model for the CC impact analysis. The CC impacts were estimated for the last two decades (2001-2020) for two fertilization scheduling (FA-SD = Fall and side-dress N and SP-SD = Spring pre-plant and side-dress N) comparing between CC scenario (FA-SD-C/SP-SD-C) with no CC (NCC) scenario (FA-SD-N/SP-SD-N). Our results suggest that the nitrate-N loss (via tile flow) and leaching reduced by 30.6 % and 29.4 %, assuming extensive adaptation of cover crop. The tile flow and deep percolation decreased by 20.8 % and 5.3 %, respectively, due to cereal rye inclusion. The model performance was relatively poor in simulating the CC impact on soil water dynamics in the hilly topography of southern Illinois. Generalizing changes in the soil properties (due to cereal rye inclusion) from the field scale to whole state (regardless of soil type) could be one of the possible limitations in this research. Overall, these findings substantiated the long-term benefits of cereal rye as a winter cover crop and found the spring N fertilizer application reduced nitrate-N loss compared to fall N application. These results could be helpful in promoting the practice in the Upper Mississippi River basin.

Influence of cover crops at the four spheres: A review of ecosystem services, potential barriers, and future directions for North America

Cover crops have been studied for over a century, but the recognition of a complex interaction of cover crop on the Earth's biosphere, lithosphere, hydrosphere, and atmosphere is relatively recent. Furthermore, previously published cover crop research has largely focused on evaluating cover crop impacts on subsequent crop yield. Understanding the cover crop-induced benefits on soil organic carbon (SOC) sequestration, nitrous oxide (N₂O) emissions, wind and water erosion, weed control, and soil microbial communities has gained considerable attention in the last few decades, which is crucial to make progress towards developing sustainable agricultural production systems. New research is continuously published to gain a comprehensive understanding of the multiple ecosystem services provided by cover crops. Here, in this review, we aimed to (a) summarize current knowledge related to cover crop impacts on agroecosystem functioning and explore the potential mechanisms responsible for those effects, and (b) identify the key factors limiting the adoption of cover crops into agroecosystems and the conspicuous knowledge gaps in cover crop research. Overall, the review results suggest that cover crops increased subsequent crop yield, increased SOC storage, increased weed suppression, mitigated N₂O emissions, reduced wind and water erosion, suppressed plant pathogens, and increased soil microbial activity and wildlife biodiversity. However, the magnitude of benefits observed with cover crops varied with cover crop type, location, and the duration of cover cropping. Notably, cover crop termination methods, designing crop rotations to fit cover crops, additional costs associated with cover crop integration, and uncertainty related to economic returns with cover crops are some of the major barriers limiting the adoption of cover crops into production systems, particularly in North America. In addition to long-term effects, future research on cover crop agronomy, breeding cover crop cultivars, and interactive effects of cover crops with other sustainable land management practices is needed.

Ecosystem services of cover crops: a research roadmap

Crops that provide ecosystem services (ESs) beyond crop production are gaining interest from farmers, policymakers, and society at large. Cover crops (CCs), grown either as the sole crop or mixture, provide multiple ESs that contribute to achieving the sustainable development goals (SDGs) of the United Nations. Little is known to date as to whether and to what extent ESs provided by CCs are affected by genotype × environment × management (G×E×M) interactions. Understanding these interactions could help to maximize the ESs of CCs while minimizing their ecosystem disservices. To this end, we highlight existing research gaps in CC research and then propose key research strategies, including the need for a paradigm shift in defining, managing, and utilizing CCs.

Nitrate losses and nitrous oxide emissions under contrasting tillage and cover crop management

Agroecosystems in the upper Mississippi River Basin are highly productive but often contribute to deterioration of water quality and greenhouse gas emissions. Cover cropping and no-till are conservation strategies implemented to reduce the environmental impact of these agroecosystems. However, using multiple strategies can lead to systemwide interactions that are not fully understood. These interactions can affect not only environmental quality metrics, such as subsurface drainage nitrate losses or nitrous oxide (N₂ O) emissions, but also may influence crop production potential. A field trial was initiated comparing nitrate losses, N₂ O emissions, and crop production under systems with fall chisel plow tillage, fall chisel plow tillage with an oat (Avena sativa L.) cover crop (CP-oat), no-till (NT), no-till with a rye (Secale cereale L.) cover crop (NT-rye), and NT with zero N fertilizer. Pathways for nitrate losses and N₂ O emissions did not appear linked and were not tied to cover crop or tillage practices. Nitrate losses were linked with drainage volumes, and cover crops and tillage had limited effect on cumulative drainage volumes. Notably, NT-rye altered the relationship between drainage volume and nitrate losses by reducing nitrate concentrations, lowering nitrate losses by 59 ±9% compared with CP-oat and 67 ± 9% compared with NT. Neither cover crop nor tillage consistently affected N₂ O emissions or crop yield. Rather, N₂ O emissions were closely tied with fertilizer N application and seasonal weather patterns. These findings indicate that nitrate leaching and N₂ O emissions are regulated by separate mechanisms, so conservation management may require stacking multiple practices to be effective.

Effect of Planting into a Green Winter Cereal Rye Cover Crop on Growth and Development, Seedling Disease, and Yield of Corn

Terminating winter cereal rye (Secale cereale L.) cover crops ≥10 days before planting (DBP) corn is recommended to minimize seedling disease and potential yield loss. In Iowa, cold temperatures and frequent precipitation can prevent farmers from following that recommendation and sometimes force them to plant corn while the rye plants are still green, referred to as "planting green" (PG). A field trial was established to evaluate the effect of rye termination shortly before or after corn planting on growth, seedling root disease, and yield of corn. A rye cover crop was terminated 17 and 3 DBP and 6 and 12 days after planting (DAP) corn; corn planted following no rye was included as a control. Rye biomass, C/N ratio, and N accumulation increased when terminated 6 or 12 DAP corn compared with rye terminated 17 or 3 DBP corn. Corn seedlings were taller from the PG treatments. More radicle root rot was observed when rye was terminated 3 DBP, 6 DAP, and 12 DAP corn than for the 17 DBP treatment and the no-rye control. Generally, greater Pythium clade B populations were detected on radicles and seminal roots of corn from the PG treatments. Corn populations, ears, or barren plants were not affected by the treatments. In both years, the no-rye control had the greatest corn yield and the 12 DAP treatment had the lowest yield. Our results suggest that PG increased corn seedling root disease and contributed to reduced corn yield.

Influence of Spatial Planting Arrangement of Winter Rye Cover Crop on Corn Seedling Disease and Corn Productivity

Despite numerous environmental benefits associated with cover crop (CC) use, some farmers are reluctant to include CCs in their production systems because of reported yield declines in corn. There are numerous potential reasons for this yield decline, including seedling disease. A winter rye CC can serve as a "green bridge" for corn seedling pathogens. We hypothesized that proximity of corn seedling roots to decaying rye CC roots contributes to corn seeding disease. An experimental field plot and an on-farm study were conducted over 2 years to evaluate growth, development, and disease severity of corn seedlings planted at various distances from decaying winter rye CC plants. The experimental field plot study was conducted in a no-till corn-soybean rotation with five replications of a winter rye CC treatment seeded as (i) no-CC control, (ii) broadcast, (iii) 19-cm drilled rows, and (iv) 76-cm drilled rows. The on-farm study was no-till corn-soybean rotation with four replications of a winter rye CC seeded as 38-cm drilled rows, 76-cm drilled rows, and no-CC control. The corn was planted on 76-cm rows shortly after rye was terminated. With multiple seeding arrangements of winter rye, corn was planted at different distances from winter rye. Corn radicle root rot severity and incidence, shoot height, shoot dry weight, corn height and chlorophyll at VT (tasseling), ear parameters, and yield were collected. Soil samples were taken in the corn row and the interrow at winter rye termination, corn planting, and corn growth stage V3 (three leaves with fully developed collars) to estimate the abundance of Pythium clade B members present in soil samples. Our results showed that increased distance between winter rye residue and corn reduced seedling disease and Pythium clade B populations in the radicles and soil and increased shoot dry weight, leaf chlorophyll, plant height, and yield. This suggests that physically distancing the corn crop from the winter rye CC is one way to reduce the negative effects of a winter rye CC on corn.

Pythium spp. Associated with Root Rot and Stunting of Winter Crops in North Carolina

Annual double-crop rotation systems that incorporate winter wheat, clary sage, or a cover crop are common in eastern North Carolina. Stunting and root rot of clary sage (Salvia sclarea L.) reduce yields of this crop, especially in wet soils. Stunting and reduced stand establishment also afflict winter cover crops, including rye, rapeseed, and winter pea. Pythium spp. are causal agents of root rot of winter wheat in this region, but their role in root rot and stunting of other winter crops is not understood. During the growing seasons of 2018 to 2019 and 2019 to 2020, samples of clary sage, rye, rapeseed, and winter pea displaying symptoms of stunting were collected across eastern North Carolina, resulting in the recovery of 420 isolates of Pythium from the roots of all hosts. Pythium irregulare, Pythium spinosum, and the complex Pythium sp. cluster B2A were the species most frequently isolated from clary sage. P. irregulare and P. spinosum were aggressive pathogens of clary sage at 18°C and caused moderate root rot at 28°C. Koch's postulates confirmed that isolates belonging to Pythium sp. cluster B2A, Pythium sylvaticum, Pythium pachycaule, Pythium aphanidermatum, Pythium myriotylum, and Pythium oopapillum are pathogens of clary sage. P. irregulare (37% of all isolates) and members of the species complex Pythium sp. cluster B2A (28% of all isolates) constituted the majority of isolates collected from all hosts and were the species most frequently isolated from rye, rapeseed, and winter pea. In pathogenicity assays, isolates representing P. irregulare and P. spinosum caused slight to moderate root necrosis on rye, rapeseed, and winter pea. Isolates representing Pythium sp. cluster B2A caused slight to moderate root necrosis on rapeseed and clary sage, but no symptoms on rye or winter pea.

Effect of 6-Methoxy-2-Benzoxazolinone (MBOA) on Pythium Species and Corn Seedling Growth and Disease

Corn yield reduction following a cereal rye cover crop has been attributed to, among other factors, allelochemicals released from decomposing cereal rye residue. The allelopathic effect of 6-methoxy-2-benzoxazolinone (MBOA) was evaluated on corn seedling growth, mycelial growth of seven pathogenic species of Pythium, and root rot of corn seedlings caused by Pythium spp. at 13, 16, and 22 to 23°C (room temperature) using a plate assay. Mycelial growth of all Pythium spp. tested was slower with MBOA at 0.25 mg/ml compared with MBOA at 0.125 and 0.0625 mg/ml and the check (4% V8 juice medium containing neomycin sulfate and chloramphenicol with 0.5% dimethyl sulfoxide). Therefore, no further tests were done with MBOA at 0.25 mg/ml. In general, MBOA reduced corn radicle length and did not cause root rot across all temperatures. However, greater root rot severity in corn was observed on corn seedlings grown in the presence of Pythium lutarium and P. oopapillum on media amended with MBOA compared with the check at all temperatures. Similarly, more root rot caused by P. torulosum and P. spinosum was observed when MBOA was present at 16°C compared with the check with no MBOA. These data suggest that corn seedling disease caused by Pythium spp. could be more severe when corn is planted following a cover crop of winter cereal rye due to the presence of allelochemicals that are released from the cover crop.

Seedling Disease of Corn Caused by Pythium Increases With Proximity of Rye

Yield loss of corn following a winter rye cover crop (CC) has been associated with increases in seedling disease caused by Pythium spp. We hypothesized that physical separation between the CC and corn could reduce the risk of seedling disease, and benefit corn growth and development. In a growth chamber experiment, corn seedlings were planted at 0 cm and 8 to 10 cm from terminated winter rye plants. Root rot severity was assessed at crop development stage V2, and quantitative PCR was used to estimate the abundance of Pythium clade B and clade F members present in corn roots. Radicle and seminal root rot severity was numerically greater when seedlings were planted 0 cm from terminated rye plants compared with seedlings planted 8 to 10 cm away. Moreover, a greater abundance of Pythium clade B was detected in corn grown within the terminated winter rye compared with corn planted further away (P = 0.0003). No effect of distance between corn and winter rye was detected for Pythium clade F. These data contribute to our understanding of the effect of a winter rye cover crop on corn and will inform field trial management practices for farmers to reduce occasional yield loss of corn following a winter rye cover crop.

Effect of Wheat Cover Crop and Split Nitrogen Application on Corn Yield and Nitrogen Use Efficiency

Corn (Zea mays L.) grain is a major commodity crop in Illinois and its production largely relies on timely application of nitrogen (N) fertilizers. Currently, growers in Illinois and other neighboring states in the U.S. Midwest use the maximum return to N (MRTN) decision support system to predict corn N requirements. However, the current tool does not factor in implications of integrating cover crops into the rotation, which has recently gained attention among growers due to several ecosystem services associated with cover cropping. A two-year field trail was conducted at the Agronomy Research Center in Carbondale, IL in 2018 and 2019 to evaluate whether split N application affects nitrogen use efficiency (NUE) of corn with and without a wheat (Triticum aestivum L.) cover crop. A randomized complete block design with split plot arrangements and four replicates was used. Main plots were cover crop treatments (no cover crop (control) compared to a wheat cover crop) and subplots were N timing applications to the corn: (1) 168 kg N ha−1 at planting; (2) 56 kg N ha−1 at planting + 112 kg N ha−1 at sidedress; (3) 112 kg N ha−1 at planting + 56 kg N ha−1 at sidedress; and (4) 168 kg N ha−1 at sidedress along with a zero-N control as check plot. Corn yield was higher in 2018 than 2019 reflecting more timely precipitation in that year. In 2018, grain yield declined by 12.6% following the wheat cover crop compared to no cover crop control, indicating a yield penalty when corn was preceded with a wheat cover crop. In 2018, a year with timely and sufficient rainfall, there were no yield differences among N treatments and N balances were near zero. In 2019, delaying the N application improved NUE and corn grain yield due to excessive rainfall early in the season reflecting on N losses which was confirmed by lower N balances in sidedressed treatments. Overall, our findings suggest including N credit for cereals in MRTN prediction model could help with improved N management in the Midwestern United States.

Cover Crop Rotation Effects on Growth and Development, Seedling Disease, and Yield of Corn and Soybean

The effects of winter cover crops on root disease and growth of corn and soybeans are poorly understood. A 3-year field experiment investigated the effect of winter cereal rye (Secale cereale L.) and winter camelina (Camelina sativa [L.] Crantz), used either in all three years or in rotation with each other, on corn (Zea mays L.) and soybean (Glycine max. [L.] Merr.) growth, root disease, and yield. Corn following a cover crop of camelina had reduced root disease, a lower Pythium population in seedling roots, and greater growth and yields compared with corn following a rye cover crop. Camelina and rye cover crops before soybean had either a positive or no effect on soybean growth and development, root disease, and yield. Moreover, Pythium clade B populations were greater in corn seedlings after a rye cover crop compared with those following a camelina cover crop, whereas clade F populations were greater on soybean seedlings following a camelina cover crop compared with seedlings following a rye cover crop. A winter camelina cover crop grown before corn had less-negative effects on corn seedling growth, root disease, and final yield than a winter rye cover crop before corn. Neither cover crop had negative effects on soybean, and the cover crop in the preceding spring had no measurable effects on either corn or soybean.

Regenerating Agricultural Landscapes with Perennial Groundcover for Intensive Crop Production

The Midwestern U.S. landscape is one of the most highly altered and intensively managed ecosystems in the country. The predominant crops grown are maize (Zea mays L.) and soybean [Glycine max (L.) Merr]. They are typically grown as monocrops in a simple yearly rotation or with multiple years of maize (2 to 3) followed by a single year of soybean. This system is highly productive because the crops and management systems have been well adapted to the regional growing conditions through substantial public and private investment. Furthermore, markets and supporting infrastructure are highly developed for both crops. As maize and soybean production have intensified, a number of concerns have arisen due to the unintended environmental impacts on the ecosystem. Many areas across the Midwest are experiencing negative impacts on water quality, soil degradation, and increased flood risk due to changes in regional hydrology. The water quality impacts extend even further downstream. We propose the development of an innovative system for growing maize and soybean with perennial groundcover to recover ecosystem services historically provided naturally by predominantly perennial native plant communities. Reincorporating perennial plants into annual cropping systems has the potential of restoring ecosystem services without negatively impacting grain crop production and offers the prospect of increasing grain crop productivity through improving the biological functioning of the system.

Time Interval Between Cover Crop Termination and Planting Influences Corn Seedling Disease, Plant Growth, and Yield

Experiments were established in a controlled-growth chamber and in the field to evaluate the effect of the length of time intervals between winter rye cover crop termination and corn planting on corn seedling disease, corn growth, and grain yield in 2014 and 2015. Rye termination dates ranged from 25 days before planting (DBP) to 2 days after planting (DAP) corn in the field and from 21 DBP to 1 DAP in controlled studies. Results were similar in both environments. In general, shorter intervals increased seedling disease and reduced corn emergence, shoot growth, and grain yield of corn following winter rye compared with corn planted 10 or more days after rye termination or without rye. Incidence of Pythium spp. increased with shorter intervals (less than 8 DBP); incidence of Fusarium spp. was not consistent between runs and experiments. In 2014, in the 1-DAP treatment, number of ears and grain yield were reduced (P = 0.05 and 0.02, respectively). In 2015, all termination intervals reduced plant population, number of ears, and yield (P = 0.01), with the 2-DBP treatment causing the biggest decrease. A 10- to 14-day interval between rye termination and corn planting should be followed to improve corn yield following a rye cover crop.