The Elusive Search for Reniform Nematode Resistance in Cotton

Enhancing Reniform Nematode Management in Sweetpotato by Complementing Host-Plant Resistance with Nonfumigant Nematicides

The reniform nematode (Rotylenchulus reniformis Linford and Oliveira) adversely impacts the quality and quantity of sweetpotato storage roots. Management of R. reniformis in sweetpotato remains a challenge because host plant resistance is not available, fumigants are detrimental to the environment and health, and crop rotation is not effective. We screened a core set of 24 sweetpotato plant introductions (PIs) against R. reniformis. Four PIs were resistant, and 10 were moderately resistant to R. reniformis, suggesting these PIs can serve as sources of resistance for sweetpotato resistance breeding programs. PI 595869, PI 153907, and PI 599386 suppressed 83 to 89% egg production relative to the susceptible control 'Beauregard', and these PIs were employed in subsequent experiments to determine if their efficacy against R. reniformis can be further increased by applying nonfumigant nematicides oxamyl, fluopyram, and fluensulfone. A 34 to 93% suppression of nematode reproduction was achieved by the application of nonfumigant nematicides, with oxamyl providing the best suppression followed by fluopyram and fluensulfone. Although sweetpotato cultivars resistant to R. reniformis are currently not available and there is a need for the development of safer yet highly effective nonfumigant nematicides, results from the current study suggest that complementing host plant resistance with nonfumigant nematicides can serve as an important tool for effective and sustainable nematode management.

Transcriptome Analysis of Resistant Cotton Germplasm Responding to Reniform Nematodes

Reniform nematode (Rotylenchulus reniformis) is an important microparasite for Upland cotton (Gossypium hirsutum L.) production. Growing resistant cultivars is the most economical management method, but only a few G. barbadense genotypes and some diploid Gossypium species confer high levels of resistance. This study conducted a transcriptome analysis of resistant genotypes to identify genes involved in host plant defense. Seedlings of G. arboreum accessions PI 529728 (A2-100) and PI 615699 (A2-190), and G. barbadense genotypes PI 608139 (GB 713) and PI 163608 (TX 110), were inoculated with the reniform nematode population MSRR04 and root samples were collected on the fifth (D5) and ninth (D9) day after inoculation. Differentially expressed genes (DEGs) were identified by comparing root transcriptomes from inoculated plants with those from non-inoculated plants. Accessions A2-100 and A2-190 showed 52 and 29 DEGs on D5, respectively, with 14 DEGs in common, and 18 DEGs for A2-100 and 11 DEGs for A2-190 on chromosome 5. On D9, four DEGs were found in A2-100 and two DEGs in A2-190. For GB 713, 52 and 43 DEGs were found, and for TX 110, 29 and 117 DEGs were observed on D5 and D9, respectively. Six DEGs were common at the two sampling times for these genotypes. Some DEGs were identified as Meloidogyne-induced cotton (MIC) 3 and 4, resistance gene analogs, or receptor-like proteins. Other DEGs have potential roles in plant defense, such as peroxidases, programmed cell death, pathogenesis related proteins, and systemic acquired resistance. Further research on these DEGs will aid in understanding the mechanisms of resistance to explore new applications for the development of resistant cultivars.

The Impact of Peach Rootstocks and Winter Cover Crops on Reproduction of Ring Nematode

Two peach rootstocks ('Guardian' and 'MP-29') and ten winter cover crops (rye, wheat, barley, triticale, oat, Austrian winter pea, crimson clover, balansa clover, hairy vetch, and daikon radish) were evaluated in a greenhouse environment to determine their suitability to host ring nematode, Mesocriconema xenoplax. Each crop was inoculated with 500 ring nematodes, and the experiments were terminated 60 days after inoculation. The reproduction factor (ratio of final and initial nematode population) ranged from 0 to 13.8, indicating the crops greatly varied in their host suitability to ring nematode. 'Guardian' has been known to tolerate ring nematode; however, results from the current study suggest the tolerance statement is anecdotal. Another peach rootstock, 'MP-29', was also a good host for ring nematode, suggesting an urgency to develop ring nematode-resistant peach rootstocks. Wheat supported the least to no nematode reproduction while pea supported the greatest reproduction. The rest of the cover crops were poor to good hosts to ring nematodes. Although planting cover crops in peach orchards is not common, employing non or poor host crops can help suppress nematodes in addition to having soil health benefits. Furthermore, peach breeding programs should focus on finding and introgressing ring nematode resistance in commercial rootstocks.

Evaluation of Soybean Genotypes (Glycine max and G. soja) for Resistance to the Root-Knot Nematode, Meloidogyne enterolobii

Potential resistance to the root-knot nematode (RKN) Meloidogyne enterolobii in 72 Glycine soja and 44 G. max soybean genotypes was evaluated in greenhouse experiments. Approximately 2,500 eggs of M. enterolobii were inoculated on each soybean genotype grown in a steam sterilized 1:1 sand to soil mixture. Sixty days postinoculation, plants were destructively harvested to determine the host status. The host status of each soybean genotype was determined by assessing root galling severity and calculating the final eggs per root system divided by the initial inoculum, or the reproduction factor (Rf). Five G. soja soybean genotypes were identified as resistant (Rf < 1) to M. enterolobii: '407202', '407239', '424083', '507618', and '639621'. None of the tested G. max soybean genotypes were identified as resistant to M. enterolobii. Some of the G. max genotypes determined to be susceptible to M. enterolobii include 'Hagood', 'Avery', 'Rhodes', 'Santee', and 'Bryan'. The genotype 'Bryan' had the lowest Rf values among the group at 5.06 and 6.67 in two independent trials, respectively, which represents a five- to sixfold increase in reproduction of M. enterolobii. Plant genotypes resistant to RKNs are effective in managing the disease and preserving yield, cost-efficient, and environmentally sustainable, and host resistance is often regarded as the most robust management tactic for controlling plant-parasitic nematodes. Resistance to RKNs in soybean genotypes has been identified for other Meloidogyne species, yet there is currently limited data regarding soybean host status to the highly aggressive nematode M. enterolobii. This study adds to the knowledge of potential native resistance to M. enterolobii in wild and cultivated soybean.

Host Suitability of Summer Cover Crops and Peach Rootstocks to the Peach Root-Knot Nematode, Meloidogyne floridensis

Greenhouse experiments were conducted to determine the host suitability of ten summer cover crops and two peach rootstocks to Meloidogyne floridensis by inoculating them with 10,000 M. floridensis eggs. Brown top millet and sunn hemp were nonhosts as they did not support nematode reproduction. Buckwheat, cowpea, pearl millet, Japanese millet, and sunflower supported more than 25,000 eggs/pot, which indicated that these crops are good hosts to M. floridensis. The crops that supported poor nematode reproduction were sesame, grain sorghum, and sorghum-sudangrass, with their reproduction ranging from 219 to 7,750 eggs/pot. In addition to having many galls on the roots, the peach rootstock Guardian had 10,100 eggs on the roots and 450 second-stage juveniles in the pot, which indicated that 'Guardian' is a good host to M. floridensis. Although the nematode reproduction on MP-29 rootstock was relatively lower, the presence of many large galls on the roots indicates MP-29 is susceptible to M. floridensis. Results from the current study suggest that the employment of nonhost cover crops and poor-host rootstocks could aid in effective nematode management programs for peaches.

Two Intra-Individual ITS1 rDNA Sequence Variants Identified in the Female and Male Rotylenchulus reniformis Populations of Alabama

Around 300 different plant species are infected by the plant-parasitic reniform nematode (Rotylenchulus reniformis), including cotton. This is a devasting nematode with a preference for cotton; it is commonly found in Alabama farms and causes severe reduction in yields. Its first internal transcribed spacer (ITS1) region can be sequenced, and potential mutations can be found in order to study the population dynamics of the reniform nematode. The goal of our study was to sequence the ITS1 rDNA region in male and female RNs that were collected from BelleMina, Hamilton, and Lamons locations in Alabama. After separating the single male and female RNs from the samples collected from the three selected listed sites above, the ITS1 region was amplified selectively using specific primers, and the resulting products were cloned and sequenced. Two distinct bands were observed after DNA amplification of male and female nematodes at 550 bp and 730 bp, respectively. The analysis of sequenced fragments among the three populations showed variation in average nucleotide frequencies of female and male RNs. Singletons within the female and male Hamilton populations ranged from 7.8% to 10%, and the variable sites ranged from 13.4% to 26%. However, female and male BelleMina populations had singletons ranging from 7.1% to 19.7% and variable regions in the range of 13.9% to 49.3%. The female and male Lamons populations had singletons ranging from 2.5% to 8.7% and variable regions in the range of 2.9% to 14.2%. Phylogenetic (neighbor-joining) analysis for the two ITS1 fragments (ITS-550 and ITS-730) showed relatively high intra-nematode variability. Different clone sequences from an individual nematode often had greater similarity with other nematodes than with their own sequences. RNA fold analysis of the ITS1 sequences revealed varied stem and loop structures, suggesting both conserved and variable regions in the variants identified from female and male RNs, thus underscoring the presence of significant intra- and inter-nematodal variation among RN populations in Alabama.

Study on two nematode species suggests climate change will inflict greater crop damage

Food security has become one of the greatest challenges of the millennium and it is predicted to be exacerbated by climate change due to the adverse effects of soil temperature on crop productivity. Although plant-parasitic nematodes are one of the most important limiting factors of agricultural production, the fate of soil temperature in their biology is not fully understood. Here we present the effects of soil temperature on survival, reproduction, virulence, and disease severity from the perspective of two nematode species Rotylenchulus reniformis and Meloidogyne floridensis. The two nematode species were purposefully selected to represent a significant threat to annual and perennial crops. We employed novel approaches of direct as well as indirect heat exposure to evaluate nematode biology. The direct heat exposure assay involved the exposure of nematodes to hot water in a heating block at 32, 33, and 34 °C for 7 h, and subsequent evaluation of their survival after 18 h. The indirect exposure assay employed a commercial heat mat to raise soil temperatures to 32, 33, and 34 °C for 7 h during the daytime, and subsequent evaluation of nematode reproduction, virulence, and/or disease severity over the period of 6 weeks after inoculation. When directly exposed to hot water at 34 °C, the survival of R. reniformis increased by 10% while the survival of M. floridensis decreased by 12% relative to that at 32 °C. Upon increasing soil temperatures from 32 to 34 °C, the reproduction of R. reniformis and M. floridensis decreased by 49% and 53%, respectively. A significant reduction in the reproduction of M. floridensis occurred when soil temperature was increased from 33 to 34 °C, however, the same condition did not significantly affect R. reniformis reproduction suggesting the latter species has a greater ability to adapt to increasing soil temperature. Additionally, the virulence of R. reniformis was greater at 33 and 34 °C relative to that at 30 °C indicating increased aggressiveness of the nematode at higher soil temperatures. The virulence of M. floridensis appeared to be decreased as evident from increased root biomass when soil temperature was increased from 32 to 34 °C, however, the greater root biomass may have resulted from increased root galling at the higher temperatures. Results of the current study suggest that while higher soil temperatures due to climate change may lead to reduced nematode reproduction, crop losses will likely increase due to increased nematode virulence. Through the current study, we report practical evidence of the quantitative impact of climate change on the biology of plant-parasitic nematodes. Further studies involving a wider range of temperature and exposure time are needed to better understand nematode biology under climate change.

Biotechnological Tools to Elucidate the Mechanism of Plant and Nematode Interactions

Plant-parasitic nematodes (PPNs) pose a threat to global food security in both the developed and developing worlds. PPNs cause crop losses worth a total of more than USD 150 billion worldwide. The sedentary root-knot nematodes (RKNs) also cause severe damage to various agricultural crops and establish compatible relationships with a broad range of host plants. This review aims to provide a broad overview of the strategies used to identify the morpho-physiological and molecular events that occur during RKN parasitism. It describes the most current developments in the transcriptomic, proteomic, and metabolomic strategies of nematodes, which are important for understanding compatible interactions of plants and nematodes, and several strategies for enhancing plant resistance against RKNs. We will highlight recent rapid advances in molecular strategies, such as gene-silencing technologies, RNA interference (RNAi), and small interfering RNA (siRNA) effector proteins, that are leading to considerable progress in understanding the mechanism of plant-nematode interactions. We also take into account genetic engineering strategies, such as targeted genome editing techniques, the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR associated protein 9 (Cas9) (CRISPR/Cas-9) system, and quantitative trait loci (QTL), to enhance the resistance of plants against nematodes.

Evaluation of Meloidogyne Incognita and Rotylenchulus Reniformis Nematode-resistant Cotton Cultivars with Supplemental Corteva Agriscience Nematicides

Meloidogyne incognita- and Rotylenchulus reniformis-resistant new cotton cultivars have recently become available, giving growers a new option in nematode management. The objectives of this study were: (i) to determine the yield potential of the new cultivars PHY 360 W3FE (M. incognita-resistant) and PHY 332 W3FE (R. reniformis-resistant) in nematode-infested fields and (ii) to evaluate the effects of combining the nematicides Reklemel (fluazaindolizine), Vydate C-LV (oxamyl), and the seed treatment BIOST Nematicide 100 (heat killed Burkholderia rinojenses and its non-living spent fermentation media) with resistant cotton cultivars on nematode population levels and lint yield. Field experiments in 2020 and 2021 indicated M. incognita population levels were 73% lower on PHY 360 W3FE (R) and 80% lower for R. reniformis on the PHY 332 W3FE (R) at 40 days after planting. Nematode eggs per gram of root were further reduced an average of 86% after the addition of Reklemel and Vydate C-LV when averaging both cultivars over the two years. Tests with BIOST Nematicide 100 + Reklemel + Vydate C-LV (0.56 + 2.5 L/ha) in both M. incognita and R. reniformis fields produced higher lint yields. Overall, planting PHY 360 W3FE (R) and PHY 332 W3FE (R) improved yields an average of 364 kg/ha while limiting nematode population increases. The addition of the nematicides further increased yields 152 kg/ha of the nematode-resistant cultivars.

Management of Reniform Nematode in Cotton Using Winter Crop Residue Amendments Under Greenhouse Conditions

Rotylenchulus reniformis (reniform nematode, RN) is among the most important nematodes affecting cotton. Cultural practices, such as rotation and soil amendment, are established methods for managing RN. Management may be enhanced if crop residue has biofumigant properties against RN. The objective was to evaluate the efficacy of winter crop amendments for managing RN in the greenhouse. Reniform nematode-infested soil was amended with dry or fresh organic matter (OM, 2% w/w) from winter crops - canola, carinata, hairy vetch, oat, or no crop. Cotton was subsequently grown in this soil. Independent of the crop, dry OM amendments were more effective than no amendment at managing RN, while fresh OM amendments were not. Soil and root RN abundances and reproduction factors were generally lower in Trials 1 and 3 for dry OM than fresh OM amendments or control without OM. In Trial 2, none of the OM treatments reduced RN parameters compared with no OM control. In general, when compared to plants without RN or OM, RN did not produce significant changes in growth parameters but did affect physiology (Soil Plant Analysis Development, or SPAD, values). In conclusion, dry OM amendments can help manage RN, crop growth does not always relate to RN abundances, and SPAD values could help indicate RN presence.

Non-fumigant Nematicides are Promising Alternatives to Fumigants for the Management of Meloidogyne enterolobii in Tobacco

Experiments were conducted to evaluate the efficacy of three currently available non-fumigant chemical nematicides (oxamyl, fluopyram, and fluensulfone) and a biological nematicide derived from Burkholderia against Meloidogyne enterolobii on tobacco in a growth room environment. The non-fumigant chemical nematicides greatly suppressed nematode egg production compared to the untreated control, the suppression being 99.9% for fluensulfone and oxamyl, and 93% for fluopyram. Similarly, oxamyl-, fluensulfone-, and fluopyram-treated pots, respectively, had 99%, 98%, and 94% less J2/100 cm3 of soil than those in the control. The biological nematicide did not have a significant effect on nematode egg production and the soil abundance of J2. The root biomass of tobacco was significantly reduced by the application of fluensulfone, while the effects of oxamyl, fluopyram, and Burkholderia metabolites were not significant compared to the untreated control. Results from this study suggest that non-fumigant nematicides have a potential to serve as an alternative to fumigant nematicides.

Effects of Grass-Based Crop Rotation, Nematicide, and Irrigation on the Nematode Community in Cotton

Plant-parasitic and free-living nematodes – bacterivores, fungivores, omnivores, predators – comprise the nematode community. Nematicide application and crop rotation are important tools to manage plant-parasitic nematodes, but effects on free-living nematodes and nematode ecological indices need further study. The nematicide fluopyram was recently introduced in cotton (Gossypium hirsutum) production and its effects on the nematode community need assessment. This research was conducted in 2017 and 2018 at a long-term field site in Quincy, FL where perennial grass/sod-based (bahiagrass, Paspalum notatum) and conventional cotton rotations were established in 2000. The objective of this research was to evaluate the effects of fluopyram nematicide, crop rotation phase, and irrigation on free-living nematodes and nematode ecological indices based on three soil sampling dates each season. We did not observe consistent effects of crop rotation phase on free-living nematodes or nematode ecological indices. Only omnivores were consistently negatively impacted by fluopyram. Nematode ecological indices reflected this negative effect by exhibiting a degraded/ stressed environmental condition relative to untreated plots. Free-living nematodes were not negatively impacted by nematicide when sod-based rotation was used.

On-Farm Evaluations of Nonfumigant Nematicides on Nematode Communities of Peach

Experiments were established to evaluate the efficacy of currently available nonfumigant chemical and biological nematicides against nematode communities in peach orchards in two different geographic regions of South Carolina: the Upstate and Ridge. The treatments included sole or mixed application of two chemical nematicides (oxamyl and fluopyram) and a biological nematicide (Majestene) plus an untreated control. Ring nematode and lesion nematode were predominant in Upstate and Ridge orchards, respectively. Fluopyram was the most effective nematicide in the Upstate orchard, and it reduced plant-parasitic nematodes by 69% relative to the untreated control at 3 months postapplication. Similarly, fluopyram and oxamyl suppressed 74 to 87% of plant-parasitic nematodes in the Ridge orchard at 2 months postapplication. Significant effects of Majestene on plant-parasitic nematodes was not observed. Mixed applications of nematicides were also effective in suppressing plant-parasitic nematodes although the suppressions were not always significant from sole applications or the control. The chemical nematicides significantly reduced free-living nematodes in the first 2 months following their applications in the Ridge orchard, the reductions ranging from 60 to 79% relative to the control. However, free-living nematode populations quickly rebounded to the highest level in 3 months following the nematicide applications. Free-living nematode communities in the Upstate orchard did not experience any significant effects of nematicides until 4 months following nematicide application; at that time there was a 60 to 68% decline in populations. Results from this study suggest that the nonfumigant nematicides can only provide a short-term management of plant-parasitic nematodes in peach.

Pyramiding dsRNAs increases phytonematode tolerance in cotton plants

Host-derived suppression of nematode essential genes decreases reproduction of Meloidogyne incognita in cotton. Root-knot nematodes (RKN) represent one of the most damaging plant-parasitic nematode genera worldwide. RNAi-mediated suppression of essential nematode genes provides a novel biotechnological strategy for the development of sustainable pest-control methods. Here, we used a Host Induced Gene Silencing (HIGS) approach by stacking dsRNA sequences into a T-DNA construct to target three essential RKN genes: cysteine protease (Mi-cpl), isocitrate lyase (Mi-icl), and splicing factor (Mi-sf), called dsMinc1, driven by the pUceS8.3 constitutive soybean promoter. Transgenic dsMinc1-T₄ plants infected with Meloidogyne incognita showed a significant reduction in gall formation (57-64%) and egg masses production (58-67%), as well as in the estimated reproduction factor (60-78%), compared with the susceptible non-transgenic cultivar. Galls of the RNAi lines are smaller than the wild-type (WT) plants, whose root systems exhibited multiple well-developed root swellings. Transcript levels of the three RKN-targeted genes decreased 13- to 40-fold in nematodes from transgenic cotton galls, compared with those from control WT galls. Finally, the development of non-feeding males in transgenic plants was 2-6 times higher than in WT plants, indicating a stressful environment for nematode development after RKN gene silencing. Data strongly support that HIGS of essential RKN genes is an effective strategy to improve cotton plant tolerance. This study presents the first application of dsRNA sequences to target multiple genes to promote M. incognita tolerance in cotton without phenotypic penalty in transgenic plants.

Steam-based thermotherapy for managing nematodes in strawberry transplants

Aerated steam-based thermotherapy was developed and evaluated for its efficacy in managing three nematode species (Aphelenchoides besseyi, Meloidogyne hapla, and Pratylenchus penetrans) that are often transported as quiescent passengers on strawberry transplants shipped to Florida from out-of-state nurseries. Initial studies were focused on evaluating the intrinsic temperature sensitivity of each nematode species to hot water in laboratory conditions. Each nematode species was exposed to hot water at 40, 44, 48, and 52°C for 1, 5, 10, 30, 60, 120, and 240 min. Exposure for 60 min or higher at 40°C paralyzed all three nematode species when examined immediately after heat treatment. Examination of the nematodes 24 hr post-treatment suggested that 100% mortality of all three nematode species was achieved when nematodes were exposed to hot water at a minimum temperature of 44°C for 120 min. Further studies were conducted to evaluate the efficacy of aerated steam to kill all three nematode species by exposing nematode-infested strawberry transplants at 44°C for 60, 120, and 240 min. Exposure of nematode inoculated plants to steam for 60 or 120 min reduced the populations of all three nematode species, but this was not enough to completely eradicate any of the three nematode species. Exposure for 240 min, however, was the most effective in reducing the populations of the three nematode species. A 240 min of exposure to aerated steam completely eradicated A. besseyi and M. hapla while P. penetrans populations were reduced only by 85%. Furthermore, the aerated steam had minimal to no adverse effect on plant biomass. Results from both the laboratory and greenhouse studies indicated that M. hapla was more sensitive to heat treatment followed by A. besseyi and P. penetrans. Results from this study suggested that aerated steam-based thermotherapy has good potential as a non-chemical method of management of nematodes of strawberry transplants.

Development of a Real-Time TaqMan PCR Method for Absolute Quantification of the Biocontrol Agent Esteya vermicola

Esteya vermicola has been used as an effective biocontrol agent for the management of the pinewood nematode, Bursaphelenchus xylophilus. Tools for monitoring the colonization and parasitism patterns of E. vermicola are required for the development of highly effective biocontrol strategies. Because the TaqMan PCR technique is effective for quantification of species in environmental samples, a real-time PCR-based methodology was developed for absolute quantification of E. vermicola via internal standard addition and extrapolation of DNA quantity to hyphal length. Primers and a probe for the 28S ribosomal RNA gene of E. vermicola were designed, and nested TaqMan real-time PCR-based quantification was performed. In addition, internal standard-based yield measurement was correlated to the absolute quantity of target genomic DNA. Moreover, an extrapolation curve obtained by optical microscopy and image analysis of the mycelia was constructed for the measurement of fungal hyphal length. The absolute quantification method developed in the present study provides a sensitive and accurate technique to quantify fungal density in either wood or other substrate samples and can be used as an effective tool for future studies of biocontrol agents.

The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution

Cotton is an important crop that has made significant gains in production over the last century. Emerging pests such as the reniform nematode have threatened cotton production. The rare African diploid species Gossypium longicalyx is a wild species that has been used as an important source of reniform nematode immunity. While mapping and breeding efforts have made some strides in transferring this immunity to the cultivated polyploid species, the complexities of interploidal transfer combined with substantial linkage drag have inhibited progress in this area. Moreover, this species shares its most recent common ancestor with the cultivated A-genome diploid cottons, thereby providing insight into the evolution of long, spinnable fiber. Here we report a newly generated de novo genome assembly of G. longicalyx. This high-quality genome leveraged a combination of PacBio long-read technology, Hi-C chromatin conformation capture, and BioNano optical mapping to achieve a chromosome level assembly. The utility of the G. longicalyx genome for understanding reniform immunity and fiber evolution is discussed.

Evaluation of Recombinase Polymerase Amplification Assay for Detecting Meloidogyne javanica

Meloidogyne javanica is one of the most widespread and economically important nematodes in many countries, including China. In this study, a recombinase polymerase amplification (RPA) assay was evaluated for the detection of M. javanica based on the sequences of a sequence-characterized amplified regions marker gene segment. The RPA assay specifically detected M. javanica from individual juvenile or adult female, M. javanica-induced galls, and nematodes in the soil samples. The detection limit of M. javanica RPA assay was 1 pg of purified genomic DNA, 0.01 adult female, or 0.1 second-stage juvenile, which was 10 times more sensitive than conventional PCR assay. Furthermore, combined with lateral flow dipstick (LFD), a visual detection method of LFD-RPA assay was developed, which is suitable for onsite surveys and routine diagnostics. Results indicate that the RPA assay is rapid, sensitive, and reliable for detection and molecular identification of M. javanica.

Screening for Resistance to Meloidogyne enterolobii in Capsicum annuum Landraces From Mexico

Meloidogyne enterolobii has become an economically important plant parasitic nematode worldwide because of its high aggressiveness, increasing geographic distribution, wide host range, and pathogenicity in pepper (Capsicum annuum) cultivars carrying resistance genes to Meloidogyne incognita, Meloidogyne arenaria, and Meloidogyne javanica. The objectives of this study were to identify landraces of peppers resistant to M. enterolobii and analyze the relationship between resistance indicators and the phenotype parameters of plant height, stem width, leaf length, leaf width, relative chlorophyll, and number of flowers. Ninety landraces of C. annuum were collected from several states of Mexico and were inoculated with 2,000 eggs of M. enterolobii. Eleven resistant landraces were selected and confirmed with a second inoculation experiment. Seventy-five days after inoculation, in both experiments, the resistance of landraces UTC66, UTC90, UTC67, UTC88, and UTC81 to M. enterolobii was consistent. Although genotypes UTC24, UTC79, UTC65, UTC68, UTC69, and UTC25 were susceptible, these landraces had a significantly higher proportion of resistant plants, less root galling, and a lower reproductive index, in comparison with the rest of the 79 genotypes and the susceptible control, which were highly susceptible in both experiments. There was no correlation between resistant indicators and phenotypic parameters, although plant height, relative chlorophyll, and number of flowers were in general significantly affected compared with noninoculated controls, indicating that the nematodes reduce the growth and yield of peppers. Results indicate that all resistant plants from these landraces are promising sources of resistance for the development of pepper cultivars resistant to M. enterolobii.

Nematicide influence on cotton yield and plant-parasitic nematodes in conventional and sod-based crop rotation

Plant-parasitic nematodes (Rotylenchulus reniformis (reniform, RN), Helicotylenchus dihystera (spiral), and Mesocriconema ornatum (ring)) and yield were investigated in cotton phases of conventional (peanut–cotton–cotton) and sod-based (bahiagrass–bahiagrass–peanut–cotton) rotations with or without irrigation and fluopyram nematicide at a long-term research site, established in 2000, in Quincy, Florida, USA. Objectives were to determine impacts of nematicide application on cotton yield and evaluate effects of nematicide on plant-parasitic nematodes in these rotations in 2017 and 2018. Reniform nematode population densities were greater in conventional cotton than sod-based cotton. Ring and spiral nematode population densities were greater in sod-based cotton than conventional cotton. Plots receiving nematicide had increased RN population densities in preplant 2018 soil samples and spiral nematode population densities in preplant 2017, harvest 2017, preplant 2018, and harvest 2018 soil samples compared to untreated plots. Cotton seed yield in conventional rotation was increased by 18% following nematicide application in 2017 but decreased by 10% in sod-based rotation in 2018, relative to the untreated control. Sod-based rotation had greater cotton yield than conventional rotation in 2017 and 2018. Nematicide application did not improve cotton yield in sod-based rotation and was inconsistent in conventional rotation.

Molecular characterization of root-knot nematodes (Meloidogyne spp.) from Arkansas, USA

Root-knot nematodes (Meloidogyne spp.) are the most common major pathogens of many crops throughout the world, impacting both the quantity and quality of marketable yields. In this study, a total of 244 root-knot nematode populations from various hosts from 39 counties in Arkansas were tested to determine the species diversity. Molecular characterization was performed on these populations by DNA sequencing of the ribosomal DNA 18S-ITS-5.8S, 28S D2/D3 and a mitochondrial DNA fragment flanking cytochrome oxidase gene subunit II - the intergenic spacer. Five species were identified, including M. incognita (Kofoid & White, 1919) Chitwood, 1949 from soybean, cotton, corn and various vegetables (232 samples); M. hapla Chitwood, 1949 from rose (1 sample); M. haplanaria Eisenback, Bernard, Starr, Lee & Tomaszewski, 2003 from okra, tomato, peanut, Indian hawthorn, ash, willow and elm trees (7 samples); M. marylandi Jepson & Golden in Jepson, 1987 from grasses (3 samples); and M. partityla Kleynhans, 1986 from pecan (1 sample) through a combined analysis of DNA sequencing and PCR by species-specific primers. Meloidogyne incognita is the most abundant species that was identified in 95% samples and was the only species in field crops including soybean and cotton, except for one population of M. haplanaria from soybean in Logan County (TK201). Species-specific primers were used to verify M. incognita through PCR by species-specific primers. Unlike historical data, M. arenaria, M. javanica and M. graminis were not detected from any of the samples collected during this study. This result is essential for effective and sustainable management strategies against root-knot nematodes in Arkansas.

Single Nucleotide Polymorphism Analysis Using KASP Assay Reveals Genetic Variability in Rotylenchulus reniformis

This study employed single nucleotide polymorphisms (SNPs) to determine the genetic variability present in 26 isolates of Rotylenchulus reniformis from Louisiana, Mississippi, Arkansas, South Carolina, Georgia, Hawaii, and Alabama. Genomic DNA from reniform nematode was extracted and increased quantitatively using the process of whole genome amplification. More than 162 putative SNPs were identified, 31 of which were tested using a KASP kompetitive allele-specific PCR genotyping assay. Of the SNPs tested, 13, 17, and 19 SNPs revealed genetic variability within reniform nematode isolates from Louisiana, Mississippi, and Arkansas, respectively. Seven SNPs elucidated genetic differences among isolates of reniform nematode from Louisiana, Mississippi, and Arkansas. Eight SNPs determined genetic variability among individual isolates from South Carolina, Georgia, Hawaii, and Alabama. This study is the first to report genetic variability in geographic isolates of reniform nematode employing a SNP assay. This study also demonstrated that SNP markers can be used to evaluate isolates of R. reniformis and could be useful to assess their genetic diversity, origin, and distribution. Such information would be extremely useful in resistance breeding programs.