1
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Morimoto J, Wenzel M, Derous D, Henry Y, Colinet H. The transcriptomic signature of responses to larval crowding in Drosophila melanogaster. INSECT SCIENCE 2023; 30:539-554. [PMID: 36115064 PMCID: PMC10947363 DOI: 10.1111/1744-7917.13113] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 08/22/2022] [Accepted: 08/27/2022] [Indexed: 06/15/2023]
Abstract
Intraspecific competition at the larval stage is an important ecological factor affecting life-history, adaptation and evolutionary trajectory in holometabolous insects. However, the molecular pathways underpinning these ecological processes are poorly characterized. We reared Drosophila melanogaster at three egg densities (5, 60, and 300 eggs/mL) and sequenced the transcriptomes of pooled third-instar larvae. We also examined emergence time, egg-to-adult viability, adult mass, and adult sex-ratio at each density. Medium crowding had minor detrimental effects on adult phenotypes compared to low density and yielded 24 differentially expressed genes (DEGs), including several chitinase enzymes. In contrast, high crowding had substantial detrimental effects on adult phenotypes and yielded 2107 DEGs. Among these, upregulated gene sets were enriched in sugar, steroid and amino acid metabolism as well as DNA replication pathways, whereas downregulated gene sets were enriched in ABC transporters, taurine, Toll/Imd signaling, and P450 xenobiotics metabolism pathways. Overall, our findings show that larval crowding has a large consistent effect on several molecular pathways (i.e., core responses) with few pathways displaying density-specific regulation (i.e., idiosyncratic responses). This provides important insights into how holometabolous insects respond to intraspecific competition during development.
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Affiliation(s)
- Juliano Morimoto
- School of Biological SciencesUniversity of AberdeenAberdeenUnited Kingdom
- Programa de Pós‐graduação em Ecologia e ConservaçãoUniversidade Federal do ParanáCuritibaBrazil
- Institute of MathematicsKing's CollegeUniversity of AberdeenAberdeenUnited Kingdom
| | - Marius Wenzel
- School of Biological SciencesUniversity of AberdeenAberdeenUnited Kingdom
| | - Davina Derous
- School of Biological SciencesUniversity of AberdeenAberdeenUnited Kingdom
| | - Youn Henry
- CNRS, ECOBIO (Ecosystèmes, biodiversité, évolution)—UMR 6553University of RennesRennesFrance
- Department of Ecology and EvolutionUniversity of LausanneLausanneSwitzerland
| | - Herve Colinet
- CNRS, ECOBIO (Ecosystèmes, biodiversité, évolution)—UMR 6553University of RennesRennesFrance
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2
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Kalske A, Kessler A. Herbivory selects for tolerance and constitutive defence across stages of community succession. Proc Biol Sci 2023; 290:20222458. [PMID: 36787795 PMCID: PMC9928524 DOI: 10.1098/rspb.2022.2458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Accepted: 01/13/2023] [Indexed: 02/16/2023] Open
Abstract
Plants defend themselves from herbivory by either reducing damage (resistance) or minimizing its negative fitness effects with compensatory growth (tolerance). Herbivore pressure can fluctuate from year to year in an early secondary successional community, which can create temporal variation in selection for defence traits. We manipulated insect herbivory and successional age of the community as agents of natural selection in replicated common gardens with the perennial herb Solidago altissima. In these genotypic selection experiments, herbivory consistently selected for better defended plants in both successional communities. Herbivore suppression increased plant survival and the probability of flowering only in mid-succession. Despite these substantial differences in the effects of herbivory between early and mid-succession, the selection on defence traits did not change. Succession affected selection only on aboveground biomass, with positive selection in early but not mid-succession, suggesting an important role of competition in the selective environment. These results demonstrate that changes in the community that affect key life-history traits in an individual species can occur over very short timescales in a dynamic secondary successional environment. The resulting community context-driven variation in natural selection may be an important, yet overlooked, contributor to adaptive mosaics across populations.
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Affiliation(s)
- Aino Kalske
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY 14853, USA
| | - André Kessler
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY 14853, USA
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3
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Trait differences between and within ranges of an invasive legume species. Biol Invasions 2022. [DOI: 10.1007/s10530-022-02817-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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4
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Hämäläinen A, Kiljunen M, Koskela E, Koteja P, Mappes T, Rajala M, Tiainen K. Artificial selection for predatory behaviour results in dietary niche differentiation in an omnivorous mammal. Proc Biol Sci 2022; 289:20212510. [PMID: 35259986 PMCID: PMC8905149 DOI: 10.1098/rspb.2021.2510] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
The diet of an individual is a result of the availability of dietary items and the individual's foraging skills and preferences. Behavioural differences may thus influence diet variation, but the evolvability of diet choice through behavioural evolution has not been studied. We used experimental evolution combined with a field enclosure experiment to test whether behavioural selection leads to dietary divergence. We analysed the individual dietary niche via stable isotope ratios of nitrogen (δ15N) and carbon (δ13C) in the hair of an omnivorous mammal, the bank vole, from four lines selected for predatory behaviour and four unselected control lines. Predatory voles had higher hair δ15N values than control voles, supporting our hypothesis that predatory voles would consume a higher trophic level diet (more animal versus plant foods). This difference was significant in the early but not the late summer season. The δ13C values also indicated a seasonal change in the consumed plant matter and a difference in food sources among selection lines in the early summer. These results imply that environmental factors interact with evolved behavioural tendencies to determine dietary niche heterogeneity. Behavioural selection thus has potential to contribute to the evolution of diet choice and ultimately the species' ecological niche breadth.
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Affiliation(s)
- Anni Hämäläinen
- Institute of Environmental Sciences, Jagiellonian University, Cracow, Poland.,Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | - Mikko Kiljunen
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | - Esa Koskela
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | - Pawel Koteja
- Institute of Environmental Sciences, Jagiellonian University, Cracow, Poland
| | - Tapio Mappes
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | - Milla Rajala
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
| | - Katariina Tiainen
- Department of Biological and Environmental Science, University of Jyväskylä, Jyväskylä, Finland
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5
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Henriques JF, Lacava M, Guzmán C, Gavín-Centol MP, Ruiz-Lupión D, De Mas E, Magalhães S, Moya-Laraño J. The sources of variation for individual prey-to-predator size ratios. Heredity (Edinb) 2021; 126:684-694. [PMID: 33452465 PMCID: PMC8115045 DOI: 10.1038/s41437-020-00395-5] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2020] [Revised: 12/03/2020] [Accepted: 12/07/2020] [Indexed: 01/29/2023] Open
Abstract
The relative body size at which predators are willing to attack prey, a key trait for predator-prey interactions, is usually considered invariant. However, this ratio can vary widely among individuals or populations. Identifying the range and origin of such variation is key to understanding the strength and constraints on selection in both predators and prey. Still, these sources of variation remain largely unknown. We filled this gap by measuring the genetic, maternal and environmental variation of the maximum prey-to-predator size ratio (PPSRmax) in juveniles of the wolf spider Lycosa fasciiventris using a paternal half-sib split-brood design, in which each male was paired with two females and the offspring reared in two food environments: poor and rich. Each juvenile spider was then sequentially offered crickets of decreasing size and the maximum prey size killed was determined. We also measured body size and body condition of spiders upon emergence and just before the trial. We found low, but significant heritability (h2 = 0.069) and dominance and common environmental variance (d2 + 4c2 = 0.056). PPSRmax was also partially explained by body condition (during trial) but there was no effect of the rearing food environment. Finally, a maternal correlation between body size early in life and PPSRmax indicated that offspring born larger were less predisposed to feed on larger prey later in life. Therefore, PPSRmax, a central trait in ecosystems, can vary widely and this variation is due to different sources, with important consequences for changes in this trait in the short and long terms.
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Affiliation(s)
- Jorge F. Henriques
- grid.9983.b0000 0001 2181 4263cE3c - Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal ,grid.466639.80000 0004 0547 1725Functional and Evolutionary Ecology, Estación Experimental de Zonas Áridas, CSIC, Carretera de Sacramento s/n, 04120-La Cañada De San Urbano, Almeria, Spain
| | - Mariángeles Lacava
- grid.11630.350000000121657640CENUR Noreste Sede Rivera, Universidad de la República, Ituzaingó, 667 Rivera Uruguay
| | - Celeste Guzmán
- grid.466639.80000 0004 0547 1725Functional and Evolutionary Ecology, Estación Experimental de Zonas Áridas, CSIC, Carretera de Sacramento s/n, 04120-La Cañada De San Urbano, Almeria, Spain
| | - Maria Pilar Gavín-Centol
- grid.466639.80000 0004 0547 1725Functional and Evolutionary Ecology, Estación Experimental de Zonas Áridas, CSIC, Carretera de Sacramento s/n, 04120-La Cañada De San Urbano, Almeria, Spain
| | - Dolores Ruiz-Lupión
- grid.466639.80000 0004 0547 1725Functional and Evolutionary Ecology, Estación Experimental de Zonas Áridas, CSIC, Carretera de Sacramento s/n, 04120-La Cañada De San Urbano, Almeria, Spain
| | - Eva De Mas
- grid.466639.80000 0004 0547 1725Functional and Evolutionary Ecology, Estación Experimental de Zonas Áridas, CSIC, Carretera de Sacramento s/n, 04120-La Cañada De San Urbano, Almeria, Spain
| | - Sara Magalhães
- grid.9983.b0000 0001 2181 4263cE3c - Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisboa, Portugal
| | - Jordi Moya-Laraño
- grid.466639.80000 0004 0547 1725Functional and Evolutionary Ecology, Estación Experimental de Zonas Áridas, CSIC, Carretera de Sacramento s/n, 04120-La Cañada De San Urbano, Almeria, Spain
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6
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Comeault AA, Wang J, Tittes S, Isbell K, Ingley S, Hurlbert AH, Matute DR. Genetic Diversity and Thermal Performance in Invasive and Native Populations of African Fig Flies. Mol Biol Evol 2021; 37:1893-1906. [PMID: 32109281 PMCID: PMC7306694 DOI: 10.1093/molbev/msaa050] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
During biological invasions, invasive populations can suffer losses of genetic diversity that are predicted to negatively impact their fitness/performance. Despite examples of invasive populations harboring lower diversity than conspecific populations in their native range, few studies have linked this lower diversity to a decrease in fitness. Using genome sequences, we show that invasive populations of the African fig fly, Zaprionus indianus, have less genetic diversity than conspecific populations in their native range and that diversity is proportionally lower in regions of the genome experiencing low recombination rates. This result suggests that selection may have played a role in lowering diversity in the invasive populations. We next use interspecific comparisons to show that genetic diversity remains relatively high in invasive populations of Z. indianus when compared with other closely related species. By comparing genetic diversity in orthologous gene regions, we also show that the genome-wide landscape of genetic diversity differs between invasive and native populations of Z. indianus indicating that invasion not only affects amounts of genetic diversity but also how that diversity is distributed across the genome. Finally, we use parameter estimates from thermal performance curves for 13 species of Zaprionus to show that Z. indianus has the broadest thermal niche of measured species, and that performance does not differ between invasive and native populations. These results illustrate how aspects of genetic diversity in invasive species can be decoupled from measures of fitness, and that a broad thermal niche may have helped facilitate Z. indianus's range expansion.
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Affiliation(s)
- Aaron A Comeault
- School of Natural Sciences, Bangor University, Bangor, Gwynedd, United Kingdom
| | - Jeremy Wang
- Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC
| | - Silas Tittes
- Department of Evolution and Ecology, University of California, Davis, Davis, CA
| | - Kristin Isbell
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC
| | - Spencer Ingley
- Faculty of Sciences, Brigham Young University, Hawaii, Laie, HI
| | - Allen H Hurlbert
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC
| | - Daniel R Matute
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC
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7
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Ramesh B, Firneno TJ, Demuth JP. Divergence time estimation of genus Tribolium by extensive sampling of highly conserved orthologs. Mol Phylogenet Evol 2021; 159:107084. [PMID: 33540077 DOI: 10.1016/j.ympev.2021.107084] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Revised: 01/13/2021] [Accepted: 01/22/2021] [Indexed: 11/15/2022]
Abstract
Tribolium castaneum, the red flour beetle, is among the most well-studied eukaryotic genetic model organisms. Tribolium often serves as a comparative bridge from highly derived Drosophila traits to other organisms. Simultaneously, as a member of the most diverse order of metazoans, Coleoptera, Tribolium informs us about innovations that accompany hyper diversity. However, understanding the tempo and mode of evolutionary innovation requires well-resolved, time-calibrated phylogenies, which are not available for Tribolium. The most recent effort to understand Tribolium phylogenetics used two mitochondrial and three nuclear markers. The study concluded that the genus may be paraphyletic and reported a broad range for divergence time estimates. Here we employ recent advances in Bayesian methods to estimate the relationships and divergence times among Tribolium castaneum, T. brevicornis, T. confusum, T. freemani, and Gnatocerus cornutus using 1368 orthologs conserved across all five species and an independent substitution rate estimate. We find that the most basal split within Tribolium occurred ~86 Mya [95% HPD 85.90-87.04 Mya] and that the most recent split was between T. freemani and T. castaneum at ~14 Mya [95% HPD 13.55-14.00]. Our results are consistent with broader phylogenetic analyses of insects and suggest that Cenozoic climate changes played a role in the Tribolium diversification.
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Affiliation(s)
- Balan Ramesh
- Department of Biology, The University of Texas at Arlington, TX 76019, USA.
| | - Thomas J Firneno
- Department of Biology, The University of Texas at Arlington, TX 76019, USA
| | - Jeffery P Demuth
- Department of Biology, The University of Texas at Arlington, TX 76019, USA.
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8
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Karbstein K, Prinz K, Hellwig F, Römermann C. Plant intraspecific functional trait variation is related to within-habitat heterogeneity and genetic diversity in Trifolium montanum L. Ecol Evol 2020; 10:5015-5033. [PMID: 32551078 PMCID: PMC7297743 DOI: 10.1002/ece3.6255] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Revised: 03/11/2020] [Accepted: 03/17/2020] [Indexed: 11/23/2022] Open
Abstract
Intraspecific trait variation (ITV), based on available genetic diversity, is one of the major means plant populations can respond to environmental variability. The study of functional trait variation and diversity has become popular in ecological research, for example, as a proxy for plant performance influencing fitness. Up to now, it is unclear which aspects of intraspecific functional trait variation (iFDCV) can be attributed to the environment or genetics under natural conditions. Here, we examined 260 individuals from 13 locations of the rare (semi-)dry calcareous grassland species Trifolium montanum L. in terms of iFDCV, within-habitat heterogeneity, and genetic diversity. The iFDCV was assessed by measuring functional traits (releasing height, biomass, leaf area, specific leaf area, leaf dry matter content, Fv/Fm, performance index, stomatal pore surface, and stomatal pore area index). Abiotic within-habitat heterogeneity was derived from altitude, slope exposure, slope, leaf area index, soil depth, and further soil factors. Based on microsatellites, we calculated expected heterozygosity (He) because it best-explained, among other indices, iFDCV. We performed multiple linear regression models quantifying relationships among iFDCV, abiotic within-habitat heterogeneity and genetic diversity, and also between separate functional traits and abiotic within-habitat heterogeneity or genetic diversity. We found that abiotic within-habitat heterogeneity influenced iFDCV twice as strong compared to genetic diversity. Both aspects together explained 77% of variation in iFDCV ( R adj 2 = .77, F 2, 10 = 21.66, p < .001). The majority of functional traits (releasing height, biomass, specific leaf area, leaf dry matter content, Fv/Fm, and performance index) were related to abiotic habitat conditions indicating responses to environmental heterogeneity. In contrast, only morphology-related functional traits (releasing height, biomass, and leaf area) were related to genetics. Our results suggest that both within-habitat heterogeneity and genetic diversity affect iFDCV and are thus crucial to consider when aiming to understand or predict changes of plant species performance under changing environmental conditions.
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Affiliation(s)
- Kevin Karbstein
- Institute of Ecology and SystematicsFriedrich‐Schiller‐University JenaJenaGermany
- Present address:
Department of Systematics, Biodiversity and Evolution of Plants (with Herbarium)University of GoettingenAlbrecht‐von‐Haller Institute for Plant SciencesGoettingenGermany
| | - Kathleen Prinz
- Institute of Ecology and SystematicsFriedrich‐Schiller‐University JenaJenaGermany
- Present address:
Landschaftspflegeverband Suedharz/Kyffhaeuser e.V.NordhausenGermany
| | - Frank Hellwig
- Institute of Ecology and SystematicsFriedrich‐Schiller‐University JenaJenaGermany
| | - Christine Römermann
- Institute of Ecology and SystematicsFriedrich‐Schiller‐University JenaJenaGermany
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
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9
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Jones KA, Ratcliffe N, Votier SC, Newton J, Forcada J, Dickens J, Stowasser G, Staniland IJ. Intra-specific Niche Partitioning in Antarctic Fur Seals, Arctocephalus gazella. Sci Rep 2020; 10:3238. [PMID: 32094418 PMCID: PMC7039921 DOI: 10.1038/s41598-020-59992-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Accepted: 01/31/2020] [Indexed: 11/10/2022] Open
Abstract
Competition for resources within a population can lead to niche partitioning between sexes, throughout ontogeny and among individuals, allowing con-specifics to co-exist. We aimed to quantify such partitioning in Antarctic fur seals, Arctocephalus gazella, breeding at South Georgia, which hosts ~95% of the world’s population. Whiskers were collected from 20 adult males and 20 adult females and stable isotope ratios were quantified every 5 mm along the length of each whisker. Nitrogen isotope ratios (δ15N) were used as proxies for trophic position and carbon isotope ratios (δ13C) indicated foraging habitat. Sexual segregation was evident: δ13C values were significantly lower in males than females, indicating males spent more time foraging south of the Polar Front in maritime Antarctica. In males δ13C values declined with age, suggesting males spent more time foraging south throughout ontogeny. In females δ13C values revealed two main foraging strategies: 70% of females spent most time foraging south of the Polar Front and had similar δ15N values to males, while 30% of females spent most time foraging north of the Polar Front and had significantly higher δ15N values. This niche partitioning may relax competition and ultimately elevate population carrying capacity with implications for ecology, evolution and conservation.
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Affiliation(s)
| | | | | | - Jason Newton
- Scottish Universities Environmental Research Centre, East Kilbride, Scotland
| | | | - John Dickens
- British Antarctic Survey, Cambridge, United Kingdom
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10
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Foraging strategies of individual silky pocket mice over a boom-bust cycle in a stochastic dryland ecosystem. Oecologia 2019; 190:569-578. [PMID: 31190119 DOI: 10.1007/s00442-019-04432-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2018] [Accepted: 06/07/2019] [Indexed: 01/19/2023]
Abstract
Small mammals use multiple foraging strategies to compensate for fluctuating resource quality in stochastic environments. These strategies may lead to increased dietary overlap when competition for resources is strong. To quantify temporal contributions of high (C3) versus low quality (C4) resources in diets of silky pocket mice (Perognathus flavus), we used stable carbon isotope (δ13C) analysis of 1391 plasma samples collected over 2 years. Of these, 695 samples were from 170 individuals sampled ≥ 3 times across seasons or years, allowing us to assess changes in dietary breadth at the population and individual levels across a boom-bust population cycle. In 2014, the P. flavus population increased to 412 captures compared to 8 captures in prior and subsequent years, while populations of co-occurring small mammals remained stable. As intraspecific competition increased, the population-wide dietary niche of P. flavus did not change, but individual specialization increased significantly. During this period, ~ 27% (41/151) of individuals sampled specialized on C3 resources, which were abundant during the spring and previous fall seasons. Most of the remaining individuals were C3-C4 generalists (64%) (96/151), and only 9% (14/151) specialized on C4 resources. In 2015, P. flavus population density and resource availability declined, individual dietary breadth expanded (84% generalists), no C3 specialists were found, and specialization on C4 resources increased (16%). Our results demonstrate a high degree of inter-individual plasticity in P. flavus foraging strategies, which has implications for how this species will respond to environmental change that is predicted to decrease C3 resources in the future.
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11
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Maldonado K, Newsome SD, Razeto‐Barry P, Ríos JM, Piriz G, Sabat P. Individual diet specialisation in sparrows is driven by phenotypic plasticity in traits related to trade‐offs in animal performance. Ecol Lett 2018; 22:128-137. [DOI: 10.1111/ele.13174] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Revised: 06/29/2018] [Accepted: 09/17/2018] [Indexed: 11/28/2022]
Affiliation(s)
- Karin Maldonado
- Departamento de Ciencias Facultad de Artes Liberales Universidad Adolfo Ibáñez Diagonal Las Torres 2640 SantiagoChile
- Departamento de Ciencias Ecológicas Facultad de Ciencias Universidad de Chile Casilla 653 SantiagoChile
| | - Seth D. Newsome
- Department of Biology University of New Mexico Albuquerque NM87131USA
| | - Pablo Razeto‐Barry
- Instituto de Filosofía y Ciencias de la Complejidad IFICC Los Alerces3024 SantiagoChile
- Vicerrectoría académica Universidad Diego Portales Manuel Rodríguez Sur 415 SantiagoChile
| | - Juan Manuel Ríos
- Laboratorio de Química Ambiental Instituto Argentino de Nivología Glaciología y Ciencias Ambientales (IANIGLA, CCT‐CONICET) Mendoza5500Argentina
| | - Gabriela Piriz
- Departamento de Ciencias Ecológicas Facultad de Ciencias Universidad de Chile Casilla 653 SantiagoChile
| | - Pablo Sabat
- Departamento de Ciencias Ecológicas Facultad de Ciencias Universidad de Chile Casilla 653 SantiagoChile
- Departamento de Ecología Center of Applied Ecology & Sustainability (CAPES) Facultad de Ciencias Biológicas Pontificia Universidad Católica de Chile Santiago6513677 Chile
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12
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Maldonado K, Bozinovic F, Newsome SD, Sabat P. Testing the niche variation hypothesis in a community of passerine birds. Ecology 2017; 98:903-908. [DOI: 10.1002/ecy.1769] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/15/2016] [Revised: 01/27/2017] [Accepted: 02/01/2017] [Indexed: 11/10/2022]
Affiliation(s)
- Karin Maldonado
- Departamento de Ciencias Ecológicas; Universidad de Chile; Santiago Chile
| | - Francisco Bozinovic
- Departamento de Ecología and Center of Applied Ecology & Sustainability (CAPES); Facultad de Ciencias Biológicas; Pontificia Universidad Católica de Chile; Santiago 6513677 Chile
| | - Seth D. Newsome
- Department of Biology; University of New Mexico; Albuquerque New Mexico 87131 USA
| | - Pablo Sabat
- Departamento de Ciencias Ecológicas; Universidad de Chile; Santiago Chile
- Departamento de Ecología and Center of Applied Ecology & Sustainability (CAPES); Facultad de Ciencias Biológicas; Pontificia Universidad Católica de Chile; Santiago 6513677 Chile
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13
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Cloyed CS, Eason PK. Niche partitioning and the role of intraspecific niche variation in structuring a guild of generalist anurans. ROYAL SOCIETY OPEN SCIENCE 2017; 4:170060. [PMID: 28405403 PMCID: PMC5383860 DOI: 10.1098/rsos.170060] [Citation(s) in RCA: 42] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2017] [Accepted: 02/14/2017] [Indexed: 05/30/2023]
Abstract
Intra-population niche differences in generalist foragers have captured the interest of ecologists, because such individuality can have important ecological and evolutionary implications. Few researchers have investigated how these differences affect the relationships among ecologically similar, sympatric species. Using stable isotopes, stomach contents, morphology and habitat preference, we examined niche partitioning within a group of five anurans and determined whether variation within species could facilitate resource partitioning. Species partitioned their niches by trophic level and by foraging habitat. However, there was considerable intraspecific variation in trophic level, with larger individuals generally feeding at higher trophic levels. For species at intermediate trophic levels, smaller individuals overlapped in trophic level with individuals of smaller species and larger individuals overlapped with the smallest individuals from larger species. Species varied in carbon isotopes; species with enriched carbon isotope ratios foraged farther from ponds, whereas species with depleted carbon isotope values foraged closer to ponds. Our study shows that these species partition their niches by feeding at different trophic levels and foraging at different distances from ponds. The intraspecific variation in trophic level decreased the number of individuals from each species that overlapped in trophic level with individuals from other species, which can facilitate species coexistence.
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Affiliation(s)
- Carl S. Cloyed
- National Great Rivers Research and Education Center, East Alton, IL 62024, USA
- Department of Biology, Washington University in St Louis, St Louis, MO 63130, USA
| | - Perri K. Eason
- Department of Biology, University of Louisville, Louisville, KY 40292, USA
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14
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Hanley TC, Hughes AR, Williams B, Garland H, Kimbro DL. Effects of intraspecific diversity on survivorship, growth, and recruitment of the eastern oyster across sites. Ecology 2016; 97:1518-29. [DOI: 10.1890/15-1710.1] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Torrance C. Hanley
- Marine Science Center Northeastern University Nahant Massachusetts 01908 USA
| | - A. Randall Hughes
- Marine Science Center Northeastern University Nahant Massachusetts 01908 USA
| | - Bethany Williams
- Department of Biological Science Florida State University Tallahassee Florida 32304 USA
| | - Hanna Garland
- Department of Biological Science Florida State University Tallahassee Florida 32304 USA
| | - David L. Kimbro
- Marine Science Center Northeastern University Nahant Massachusetts 01908 USA
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15
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Bolton PE, Rollins LA, Griffith SC. Colour polymorphism is likely to be disadvantageous to some populations and species due to genetic architecture and morph interactions. Mol Ecol 2016; 25:2713-8. [PMID: 27178202 DOI: 10.1111/mec.13632] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2015] [Revised: 02/22/2016] [Accepted: 03/24/2016] [Indexed: 11/29/2022]
Abstract
Polymorphism describes two or more distinct, genetically determined, phenotypes that co-occur in the same population, where the rarest morph is maintained at a frequency above the mutation rate (Ford 1945; Huxley 1955). In a recent opinion piece, we explored a new idea regarding the role of genetic architectures and morph interactions in colour polymorphisms and how this can negatively affect population performance (Bolton et al. 2015). In this issue of Molecular Ecology, Forsman (2016) thoroughly discusses the current evidence for polymorphisms enhancing population performance and critiques the validity of the definitions of polymorphism we use in our original paper. We respond by clarifying that the negative consequences of polymorphisms that we discussed are likely to be most pertinent in species that have a particular set of characteristics, such as strong sexual or social interactions between morphs and discrete genetic architectures. Although it was not our intention to redefine polymorphism, we do believe that there should be further discussion about refining or characterizing balanced polymorphisms with respect to the degree of morph sympatry, discreteness of traits and their underlying genetic architecture, and the types of selection that drive and maintain the variation. The latter describes whether polymorphism is primarily maintained by external factors such as predation pressure or internal factors such as interactions with members of the same species. The contribution of Forsman (2016) is useful to this discussion, and we hope that our exchange of opinions will inspire new empirical and theoretical ideas on the origin and maintenance of colour polymorphisms.
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Affiliation(s)
- Peri E Bolton
- Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia
| | - Lee A Rollins
- School of Life and Environmental Sciences, Centre for Integrative Ecology, Deakin University, 75 Pigdons Road, Locked Bag 20000, Geelong, Vic., 3220, Australia
| | - Simon C Griffith
- Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia
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16
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Lee SI, Nguyen XT, Kim JH, Kim NS. Genetic diversity and structure analyses on the natural populations of diploids and triploids of tiger lily, Lilium lancifolium Thunb., from Korea, China, and Japan. Genes Genomics 2016. [DOI: 10.1007/s13258-016-0398-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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17
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Mateus L, Ortega J, Mendes A, Penha J. Nonlinear effect of density on trophic niche width and between-individual variation in diet in a neotropical cichlid. AUSTRAL ECOL 2016. [DOI: 10.1111/aec.12335] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Lúcia Mateus
- Centro de Biodiversidade, Instituto de Biociências; Universidade Federal de Mato Grosso; Cuiabá MT Brazil
| | - Jean Ortega
- Programa de Pós-Graduação em Ecologia de ambientes aquáticos continentais; Universidade Estadual de Maringá; Maringá PR Brazil
| | - Angélica Mendes
- Programa de Pós-Graduação em Ecologia e Conservação da Biodiversidade, Instituto de Biociências; Universidade Federal de Mato Grosso; Cuiabá MT Brazil
| | - Jerry Penha
- Centro de Biodiversidade, Instituto de Biociências; Universidade Federal de Mato Grosso; Cuiabá MT Brazil
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18
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Rodrigues LR, Duncan AB, Clemente SH, Moya-Laraño J, Magalhães S. Integrating Competition for Food, Hosts, or Mates via Experimental Evolution. Trends Ecol Evol 2016; 31:158-170. [DOI: 10.1016/j.tree.2015.12.011] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2015] [Revised: 11/30/2015] [Accepted: 12/07/2015] [Indexed: 01/08/2023]
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19
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Wieczynski DJ, Vasseur DA. Environmental fluctuations promote intraspecific diversity and population persistence via inflationary effects. OIKOS 2015. [DOI: 10.1111/oik.02725] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Daniel J. Wieczynski
- Dept of Ecology and Evolutionary Biology Yale University 165 Prospect St. New Haven CT 06520 USA
| | - David A. Vasseur
- Dept of Ecology and Evolutionary Biology Yale University 165 Prospect St. New Haven CT 06520 USA
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20
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Baron E, Richirt J, Villoutreix R, Amsellem L, Roux F. The genetics of intra‐ and interspecific competitive response and effect in a local population of an annual plant species. Funct Ecol 2015. [DOI: 10.1111/1365-2435.12436] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Etienne Baron
- Laboratoire Génétique et Evolution des Populations Végétales UMR CNRS 8198 Université des Sciences et Technologies de Lille – Lille 1 F‐59655 Villeneuve d'Ascq Cedex France
- INRA Laboratoire des Interactions Plantes‐Microorganismes (LIPM) UMR441 F‐31326 Castanet‐Tolosan France
- CNRS Laboratoire des Interactions Plantes‐Microorganismes (LIPM) UMR2594 F‐31326 Castanet‐Tolosan France
| | - Julien Richirt
- Laboratoire Génétique et Evolution des Populations Végétales UMR CNRS 8198 Université des Sciences et Technologies de Lille – Lille 1 F‐59655 Villeneuve d'Ascq Cedex France
| | - Romain Villoutreix
- Laboratoire Génétique et Evolution des Populations Végétales UMR CNRS 8198 Université des Sciences et Technologies de Lille – Lille 1 F‐59655 Villeneuve d'Ascq Cedex France
| | - Laurent Amsellem
- Laboratoire Génétique et Evolution des Populations Végétales UMR CNRS 8198 Université des Sciences et Technologies de Lille – Lille 1 F‐59655 Villeneuve d'Ascq Cedex France
| | - Fabrice Roux
- Laboratoire Génétique et Evolution des Populations Végétales UMR CNRS 8198 Université des Sciences et Technologies de Lille – Lille 1 F‐59655 Villeneuve d'Ascq Cedex France
- INRA Laboratoire des Interactions Plantes‐Microorganismes (LIPM) UMR441 F‐31326 Castanet‐Tolosan France
- CNRS Laboratoire des Interactions Plantes‐Microorganismes (LIPM) UMR2594 F‐31326 Castanet‐Tolosan France
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21
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The interaction of intraspecific competition and habitat on individual diet specialization: a near range-wide examination of sea otters. Oecologia 2015; 178:45-59. [PMID: 25645269 DOI: 10.1007/s00442-015-3223-8] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2014] [Accepted: 12/15/2014] [Indexed: 10/24/2022]
Abstract
The quantification of individuality is a common research theme in the fields of population, community, and evolutionary ecology. The potential for individuality to arise is likely context-dependent, and the influence of habitat characteristics on its prevalence has received less attention than intraspecific competition. We examined individual diet specialization in 16 sea otter (Enhydra lutris) populations from southern California to the Aleutian Islands in Alaska. Because population histories, relative densities, and habitat characteristics vary widely among sites, we could examine the effects of intraspecific competition and habitat on the prevalence of individual diet specialization. Using observed diet data, we classified half of our sites as rocky substrate habitats and the other half containing a mixture of rocky and unconsolidated (soft) sediment substrates. We used stable isotope data to quantify population- and individual-level diet variation. Among rocky substrate sites, the slope [±standard error (SE)] of the positive significant relationship between the within-individual component (WIC) and total isotopic niche width (TINW) was shallow (0.23 ± 0.07) and negatively correlated with sea otter density. In contrast, the slope of the positive WIC/TINW relationship for populations inhabiting mixed substrate habitats was much higher (0.53 ± 0.14), suggesting a low degree of individuality, irrespective of intraspecific competition. Our results show that the potential for individuality to occur as a result of increasing intraspecific competition is context-dependent and that habitat characteristics, which ultimately influence prey diversity, relative abundance, and the range of skillsets required for efficient prey procurement, are important in determining when and where individual diet specialization occurs in nature.
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22
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Nifong JC, Layman CA, Silliman BR. Size, sex and individual-level behaviour drive intrapopulation variation in cross-ecosystem foraging of a top-predator. J Anim Ecol 2014; 84:35-48. [PMID: 25327480 DOI: 10.1111/1365-2656.12306] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2014] [Accepted: 10/07/2014] [Indexed: 11/28/2022]
Abstract
Large-bodied, top-predators are often highly mobile, with the potential to provide important linkages between spatially distinct food webs. What biological factors contribute to variation in cross-ecosystem movements, however, have rarely been examined. Here, we investigated how ontogeny (body size), sex and individual-level behaviour impacts intrapopulation variation in cross-ecosystem foraging (i.e. between freshwater and marine systems), by the top-predator Alligator mississippiensis. Field surveys revealed A. mississippiensis uses marine ecosystems regularly and are abundant in estuarine tidal creeks (from 0·3 to 6·3 individuals per km of creek, n = 45 surveys). Alligator mississippiensis captured in marine/estuarine habitats were significantly larger than individuals captured in freshwater and intermediate habitats. Stomach content analysis (SCA) showed that small juveniles consumed marine/estuarine prey less frequently (6·7% of individuals) than did large juveniles (57·8%), subadult (73%), and adult (78%) size classes. Isotopic mixing model analysis (SIAR) also suggests substantial variation in use of marine/estuarine prey resources with differences among and within size classes between sexes and individuals (range of median estimates for marine/estuarine diet contribution = 0·05-0·76). These results demonstrate the importance of intrapopulation characteristics (body size, sex and individual specialization) as key determinants of the strength of predator-driven ecosystem connectivity resulting from cross-ecosystem foraging behaviours. Understanding the factors, which contribute to variation in cross-ecosystem foraging behaviours, will improve our predictive understanding of the effects of top-predators on community structure and ecosystem function.
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Affiliation(s)
- James C Nifong
- Department of Biology, University of Florida, Gainesville, FL, USA
| | - Craig A Layman
- Department of Applied Ecology, North Carolina State University, Chapel Hill, NC, USA
| | - Brian R Silliman
- Division of Marine Sciences and Conservation, Nicholas School of the Environment, Duke University, Beaufort, NC, USA
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23
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Parent CE, Agashe D, Bolnick DI. Intraspecific competition reduces niche width in experimental populations. Ecol Evol 2014; 4:3978-90. [PMID: 25505525 PMCID: PMC4242580 DOI: 10.1002/ece3.1254] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2014] [Revised: 08/29/2014] [Accepted: 09/03/2014] [Indexed: 11/09/2022] Open
Abstract
Intraspecific competition is believed to drive niche expansion, because otherwise suboptimal resources can provide a refuge from competition for preferred resources. Competitive niche expansion is well supported by empirical observations, experiments, and theory, and is often invoked to explain phenotypic diversification within populations, some forms of speciation, and adaptive radiation. However, some foraging models predict the opposite outcome, and it therefore remains unclear whether competition will promote or inhibit niche expansion. We conducted experiments to test whether competition changes the fitness landscape to favor niche expansion, and if competition indeed drives niche expansion as expected. Using Tribolium castaneum flour beetles fed either wheat (their ancestral resource), corn (a novel resource) or mixtures of both resources, we show that fitness is maximized on a mixed diet. Next, we show that at higher population density, the optimal diet shifts toward greater use of corn, favoring niche expansion. In stark contrast, when beetles were given a choice of resources, we found that competition caused niche contraction onto the ancestral resource. This presents a puzzling mismatch between how competition alters the fitness landscape, versus competition's effects on resource use. We discuss several explanations for this mismatch, highlighting potential reasons why optimality models might be misleading.
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Affiliation(s)
- Christine E Parent
- Section of Integrative Biology, University of Texas at Austin 1 University Station C0930, Austin, Texas, 78712
| | - Deepa Agashe
- Department of Organismic and Evolutionary Biology, Harvard University 16 Divinity Avenue, Cambridge, Massachusetts, 02138 ; National Centre for Biological Sciences, Tata Institute of Fundamental Research GKVK, Bellary Road, Bangalore, 560065, India
| | - Daniel I Bolnick
- Section of Integrative Biology, University of Texas at Austin 1 University Station C0930, Austin, Texas, 78712 ; Howard Hughes Medical Institute 1 University Station C0930, Austin, Texas, 78712
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24
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Michalko R, Pekár S. Is different degree of individual specialization in three spider species caused by distinct selection pressures? Basic Appl Ecol 2014. [DOI: 10.1016/j.baae.2014.08.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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25
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McFarlane Tranquilla LA, Montevecchi WA, Fifield DA, Hedd A, Gaston AJ, Robertson GJ, Phillips RA. Individual winter movement strategies in two species of murre (Uria spp.) in the Northwest Atlantic. PLoS One 2014; 9:e90583. [PMID: 24694734 PMCID: PMC3973664 DOI: 10.1371/journal.pone.0090583] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2013] [Accepted: 02/03/2014] [Indexed: 11/18/2022] Open
Abstract
Individual wintering strategies and patterns of winter site fidelity in successive years are highly variable among seabird species. Yet, an understanding of consistency in timing of movements and the degree of site fidelity is essential for assessing how seabird populations might be influenced by, and respond to, changing conditions on wintering grounds. To explore annual variation in migratory movements and wintering areas, we applied bird-borne geolocators on Thick-billed Murres (Uria lomvia, n = 19) and Common Murres (U. aalge, n = 20) from 5 colonies in the Northwest Atlantic for 2–4 consecutive years. Thick-billed Murres ranged widely and among-individual wintering strategies were highly variable, whereas most Common Murres wintered relatively near their colonies, with among-individual variation represented more by the relative use of inshore vs. offshore habitat. Within individuals, some aspects of the wintering strategy were more repeatable than others: colony arrival and departure dates were more consistent by individual Common than Thick-billed Murres, while the sizes of home ranges (95% utilization distributions) and distances travelled to wintering area were more repeatable for both species. In consecutive years, individual home ranges overlapped from 0–64% (Thick-billed Murres) and 0–95% (Common Murres); and the winter centroids were just 239 km and 169 km apart (respectively). Over the 3–4 year timescale of our study, individuals employed either fixed or flexible wintering strategies; although most birds showed high winter site fidelity, some shifted core ranges after 2 or 3 years. The capacity among seabird species for a combination of fidelity and flexibility, in which individuals may choose from a range of alternative strategies, deserves further, longer term attention.
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Affiliation(s)
- Laura A. McFarlane Tranquilla
- Cognitive and Behavioural Ecology, Department of Psychology, Memorial University of Newfoundland, St. John's, Newfoundland and Labrador, Canada
- * E-mail:
| | - William A. Montevecchi
- Cognitive and Behavioural Ecology, Department of Psychology, Memorial University of Newfoundland, St. John's, Newfoundland and Labrador, Canada
| | - David A. Fifield
- Cognitive and Behavioural Ecology, Department of Psychology, Memorial University of Newfoundland, St. John's, Newfoundland and Labrador, Canada
| | - April Hedd
- Cognitive and Behavioural Ecology, Department of Psychology, Memorial University of Newfoundland, St. John's, Newfoundland and Labrador, Canada
| | - Anthony J. Gaston
- Environment Canada, National Wildlife Research Centre, Carleton University, Ottawa, Ontario, Canada
| | - Gregory J. Robertson
- Wildlife Research Division, Environment Canada, Mount Pearl, Newfoundland and Labrador, Canada
| | - Richard A. Phillips
- British Antarctic Survey, Natural Environment Research Council, Cambridge, United Kingdom
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26
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A nonlinear relationship between genetic diversity and productivity in a polyphagous seed beetle. Oecologia 2014; 175:151-61. [DOI: 10.1007/s00442-014-2893-y] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2013] [Accepted: 01/22/2014] [Indexed: 10/25/2022]
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27
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Jones AW, Post DM. Consumer Interaction Strength May Limit the Diversifying Effect of Intraspecific Competition: A Test in Alewife (Alosa pseudoharengus). Am Nat 2013; 181:815-26. [DOI: 10.1086/670197] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
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28
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Fang S, Clark RT, Zheng Y, Iyer-Pascuzzi AS, Weitz JS, Kochian LV, Edelsbrunner H, Liao H, Benfey PN. Genotypic recognition and spatial responses by rice roots. Proc Natl Acad Sci U S A 2013; 110:2670-5. [PMID: 23362379 PMCID: PMC3574932 DOI: 10.1073/pnas.1222821110] [Citation(s) in RCA: 86] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023] Open
Abstract
Root system growth and development is highly plastic and is influenced by the surrounding environment. Roots frequently grow in heterogeneous environments that include interactions from neighboring plants and physical impediments in the rhizosphere. To investigate how planting density and physical objects affect root system growth, we grew rice in a transparent gel system in close proximity with another plant or a physical object. Root systems were imaged and reconstructed in three dimensions. Root-root interaction strength was calculated using quantitative metrics that characterize the extent to which the reconstructed root systems overlap each other. Surprisingly, we found the overlap of root systems of the same genotype was significantly higher than that of root systems of different genotypes. Root systems of the same genotype tended to grow toward each other but those of different genotypes appeared to avoid each other. Shoot separation experiments excluded the possibility of aerial interactions, suggesting root communication. Staggered plantings indicated that interactions likely occur at root tips in close proximity. Recognition of obstacles also occurred through root tips, but through physical contact in a size-dependent manner. These results indicate that root systems use two different forms of communication to recognize objects and alter root architecture: root-root recognition, possibly mediated through root exudates, and root-object recognition mediated by physical contact at the root tips. This finding suggests that root tips act as local sensors that integrate rhizosphere information into global root architectural changes.
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Affiliation(s)
- Suqin Fang
- Department of Biology, Duke Center for Systems Biology, Duke University, Durham, NC 27708
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, South China Agricultural University, Guangzhou 510642, China
| | - Randy T. Clark
- Department of Biological and Environmental Engineering and
- The Robert W. Holley Center for Agriculture and Health, US Department of Agriculture-Agricultural Research Service, Cornell University, Ithaca, NY 14853
| | - Ying Zheng
- Department of Computer Science, Duke University, Durham, NC 27708
| | | | - Joshua S. Weitz
- School of Biology, Georgia Institute of Technology, Atlanta, GA 30332
- School of Physics, Georgia Institute of Technology, Atlanta, GA 30332; and
| | - Leon V. Kochian
- The Robert W. Holley Center for Agriculture and Health, US Department of Agriculture-Agricultural Research Service, Cornell University, Ithaca, NY 14853
| | - Herbert Edelsbrunner
- Department of Computer Science, Duke University, Durham, NC 27708
- Institute of Science and Technology Austria, 3400 Klosterneuburg, Austria
| | - Hong Liao
- State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, Root Biology Center, South China Agricultural University, Guangzhou 510642, China
| | - Philip N. Benfey
- Department of Biology, Duke Center for Systems Biology, Duke University, Durham, NC 27708
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29
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Fang S, Clark RT, Zheng Y, Iyer-Pascuzzi AS, Weitz JS, Kochian LV, Edelsbrunner H, Liao H, Benfey PN. Genotypic recognition and spatial responses by rice roots. Proc Natl Acad Sci U S A 2013. [PMID: 23362379 DOI: 10.1073/pnas.1222821110/-/dcsupplemental] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/03/2023] Open
Abstract
Root system growth and development is highly plastic and is influenced by the surrounding environment. Roots frequently grow in heterogeneous environments that include interactions from neighboring plants and physical impediments in the rhizosphere. To investigate how planting density and physical objects affect root system growth, we grew rice in a transparent gel system in close proximity with another plant or a physical object. Root systems were imaged and reconstructed in three dimensions. Root-root interaction strength was calculated using quantitative metrics that characterize the extent to which the reconstructed root systems overlap each other. Surprisingly, we found the overlap of root systems of the same genotype was significantly higher than that of root systems of different genotypes. Root systems of the same genotype tended to grow toward each other but those of different genotypes appeared to avoid each other. Shoot separation experiments excluded the possibility of aerial interactions, suggesting root communication. Staggered plantings indicated that interactions likely occur at root tips in close proximity. Recognition of obstacles also occurred through root tips, but through physical contact in a size-dependent manner. These results indicate that root systems use two different forms of communication to recognize objects and alter root architecture: root-root recognition, possibly mediated through root exudates, and root-object recognition mediated by physical contact at the root tips. This finding suggests that root tips act as local sensors that integrate rhizosphere information into global root architectural changes.
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Affiliation(s)
- Suqin Fang
- Department of Biology, Duke Center for Systems Biology, Duke University, Durham, NC 27708, USA
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30
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Abstract
Populations facing novel environments can persist by adapting. In nature, the ability to adapt and persist will depend on interactions between coexisting individuals. Here we use an adaptive dynamic model to assess how the potential for evolutionary rescue is affected by intra- and interspecific competition. Intraspecific competition (negative density-dependence) lowers abundance, which decreases the supply rate of beneficial mutations, hindering evolutionary rescue. On the other hand, interspecific competition can aid evolutionary rescue when it speeds adaptation by increasing the strength of selection. Our results clarify this point and give an additional requirement: competition must increase selection pressure enough to overcome the negative effect of reduced abundance. We therefore expect evolutionary rescue to be most likely in communities which facilitate rapid niche displacement. Our model, which aligns to previous quantitative and population genetic models in the absence of competition, provides a first analysis of when competitors should help or hinder evolutionary rescue.
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Affiliation(s)
- Matthew Miles Osmond
- Redpath Museum, McGill University, 859 Sherbrooke Street West, Montreal, Quebec, Canada.
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31
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Non-random gene flow: an underappreciated force in evolution and ecology. Trends Ecol Evol 2012; 27:659-65. [DOI: 10.1016/j.tree.2012.07.009] [Citation(s) in RCA: 231] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2012] [Revised: 06/28/2012] [Accepted: 07/18/2012] [Indexed: 01/15/2023]
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32
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Aguirre JD, Miller SH, Morgan SG, Marshall DJ. Relatedness affects the density, distribution and phenotype of colonisers in four sessile marine invertebrates. OIKOS 2012. [DOI: 10.1111/j.1600-0706.2012.20827.x] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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33
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Wennersten L, Forsman A. Population-level consequences of polymorphism, plasticity and randomized phenotype switching: a review of predictions. Biol Rev Camb Philos Soc 2012; 87:756-67. [DOI: 10.1111/j.1469-185x.2012.00231.x] [Citation(s) in RCA: 88] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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34
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Saltz JB, Alicuben ET, Grubman J, Harkenrider M, Megowan N, Nuzhdin SV. Nonadditive indirect effects of group genetic diversity on larval viability in Drosophila melanogaster imply key role of maternal decision-making. Mol Ecol 2012; 21:2270-81. [PMID: 22404740 DOI: 10.1111/j.1365-294x.2012.05518.x] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Genetic variation can have important consequences for populations: high population genetic diversity is typically associated with ecological success. Some mechanisms that account for these benefits assume that local social groups with high genetic diversity are more successful than low-diversity groups. At the same time, active decision-making by individuals can influence group genetic diversity. Here, we examine how maternal decisions that determine group genetic diversity influence the viability of Drosophila melanogaster larvae. Our groups contained wild-type larvae, whose genetic diversity we manipulated, and genetically marked 'tester' larvae, whose genotype and frequency were identical in all trials. We measured wild-type and tester viability for each group. Surprisingly, the viability of wild-type larvae was neither augmented nor reduced when group genetic diversity was altered. However, the viability of the tester genotype was substantially depressed in large, high-diversity groups. Further, not all high-diversity groups produced this effect: certain combinations of wild-type genotypes were deleterious to tester viability, while other groups of the same diversity-but containing different wild-type genotypes-were not deleterious. These deleterious combinations of wild-type genotypes could not be predicted by observing the performance of the same tester and wild-type genotypes in low-diversity groups. Taken together, these results suggest that nonadditive interactions among genotypes, rather than genetic diversity per se, account for between-group differences in viability in D. melanogaster and that predicting the consequences of genetic diversity at the population level may not be straightforward.
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Affiliation(s)
- Julia B Saltz
- Population Biology Graduate Group, University of California, Davis, Davis, CA, USA.
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35
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Krishnamoorthy M, Gerwe BA, Scharer CD, Heimburg-Molinaro J, Gregory F, Nash RJ, Arumugham J, Usta SN, Eilertson CD, Stice SL, Nash RJ. GABRB3 gene expression increases upon ethanol exposure in human embryonic stem cells. J Recept Signal Transduct Res 2011; 31:206-13. [PMID: 21619448 DOI: 10.3109/10799893.2011.569723] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
Ionotropic receptors are the target for most mood-defining compounds. Chronic exposure to ethanol (EtOH) alters receptor-mediated responses and the numbers of these channels and specific subunits; as well as induces anxiolytic, sedative, and anesthetic activity in the human brain. However, very little is known regarding the effects of EtOH on ionotropic receptor transcription during early human development (preimplantation). Using two separate human embryonic stem cell lines the study shows that low amounts of EtOH (20 mM) alters transcription of the ionotropic subunit GABRB3. Changes in ionotrophic receptor expression influence the central nervous system development and have been shown to produce brain abnormalities in animal models. These results suggest that low concentrations of EtOH can alter ionotropic receptor transcription during early human development (preimplantation), which may be a contributing factor to the neurological phenotypes seen in fetal alcohol spectrum disorder (FASD).
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37
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Abstract
Many generalist populations are composed of specialised individuals, whose niches are small subsets of the population niche. This 'individual specialisation' is a widespread phenomenon in natural populations, but until recently few studies quantified the magnitude of individual specialisation and how this magnitude varies among populations or contexts. Such quantitative approaches are necessary for us to understand how ecological interactions influence the amount of among-individual variation, and how the amount of variation might affect ecological dynamics. Herein, we review recent studies of individual specialisation, emphasising the novel insights arising from quantitative measures of diet variation. Experimental and comparative studies have confirmed long-standing theoretical expectations that the magnitude of among-individual diet variation depends on the level of intra and interspecific competition, ecological opportunity and predation. In contrast, there is little empirical information as to how individual specialisation affects community dynamics. We discuss some emerging methodological issues as guidelines for researchers studying individual specialisation, and make specific recommendations regarding avenues for future research.
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Affiliation(s)
- Márcio S Araújo
- Marine Sciences Program, Department of Biological Sciences, Florida International University, Miami, FL 33181, USA.
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Agashe D, Falk JJ, Bolnick DI. EFFECTS OF FOUNDING GENETIC VARIATION ON ADAPTATION TO A NOVEL RESOURCE. Evolution 2011; 65:2481-91. [DOI: 10.1111/j.1558-5646.2011.01307.x] [Citation(s) in RCA: 87] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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39
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Svanbäck R, Rydberg C, Leonardsson K, Englund G. Diet specialization in a fluctuating population of Saduria entomon: a consequence of resource or forager densities? OIKOS 2010. [DOI: 10.1111/j.1600-0706.2010.18945.x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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