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Rowe TB, Stafford TW, Fisher DC, Enghild JJ, Quigg JM, Ketcham RA, Sagebiel JC, Hanna R, Colbert MW. Human Occupation of the North American Colorado Plateau ∼37,000 Years Ago. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.903795] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Calibrating human population dispersals across Earth’s surface is fundamental to assessing rates and timing of anthropogenic impacts and distinguishing ecological phenomena influenced by humans from those that were not. Here, we describe the Hartley mammoth locality, which dates to 38,900–36,250 cal BP by AMS 14C analysis of hydroxyproline from bone collagen. We accept the standard view that elaborate stone technology of the Eurasian Upper Paleolithic was introduced into the Americas by arrival of the Native American clade ∼16,000 cal BP. It follows that if older cultural sites exist in the Americas, they might only be diagnosed using nuanced taphonomic approaches. We employed computed tomography (CT and μCT) and other state-of-the-art methods that had not previously been applied to investigating ancient American sites. This revealed multiple lines of taphonomic evidence suggesting that two mammoths were butchered using expedient lithic and bone technology, along with evidence diagnostic of controlled (domestic) fire. That this may be an ancient cultural site is corroborated by independent genetic evidence of two founding populations for humans in the Americas, which has already raised the possibility of a dispersal into the Americas by people of East Asian ancestry that preceded the Native American clade by millennia. The Hartley mammoth locality thus provides a new deep point of chronologic reference for occupation of the Americas and the attainment by humans of a near-global distribution.
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Baleka S, Varela L, Tambusso PS, Paijmans JL, Mothé D, Stafford TW, Fariña RA, Hofreiter M. Revisiting proboscidean phylogeny and evolution through total evidence and palaeogenetic analyses including Notiomastodon ancient DNA. iScience 2022; 25:103559. [PMID: 34988402 PMCID: PMC8693454 DOI: 10.1016/j.isci.2021.103559] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2021] [Revised: 10/18/2021] [Accepted: 12/01/2021] [Indexed: 01/13/2023] Open
Abstract
The extinct Gomphotheriidae is the only proboscidean family that colonized South America. The phylogenetic position of the endemic taxa has been through several revisions using morphological comparisons. Morphological studies are enhanced by paleogenetic analyses, a powerful tool to resolve phylogenetic relationships; however, ancient DNA (aDNA) preservation decreases in warmer regions. Despite the poor preservation conditions for aDNA in humid, sub-tropical climates, we recovered ∼3,000 bp of mtDNA of Notiomastodon platensis from the Arroyo del Vizcaíno site, Uruguay. Our calibrated phylogeny places Notiomastodon as a sister taxon to Elephantidae, with a divergence time of ∼13.5 Ma. Additionally, a total evidence analysis combining morphological and paleogenetic data shows that the three most diverse clades within Proboscidea diverged during the early Miocene, coinciding with the formation of a land passage between Africa and Eurasia. Our results are a further step toward aDNA analyses on Pleistocene samples from subtropical regions and provide a framework for proboscidean evolution.
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Affiliation(s)
- Sina Baleka
- Institute for Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam, Germany
- Faculty of Life and Environmental Sciences, University of Iceland, Sæmundargata 2, 102 Reykjavik, Iceland
| | - Luciano Varela
- Departamento de Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
- Servicio Académico Universitario y Centro de Estudios Paleontológicos (SAUCE-P), Universidad de la República, Santa Isabel s/n, 91500 Sauce, Departamento de Canelones, Uruguay
| | - P. Sebastián Tambusso
- Departamento de Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
- Servicio Académico Universitario y Centro de Estudios Paleontológicos (SAUCE-P), Universidad de la República, Santa Isabel s/n, 91500 Sauce, Departamento de Canelones, Uruguay
| | - Johanna L.A. Paijmans
- Institute for Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam, Germany
| | - Dimila Mothé
- Laboratório de Mastozoologia, Instituto de Biociências, Universidade Federal do Estado do Rio de Janeiro, Av. Pasteur, 458/501, 22290-240 Rio de Janeiro, Brazil
- Programa de Pós-graduação em Biodiversidade e Biologia Evolutiva, Centro de Ciências da Saúde, Instituto de Biologia, Campus Ilha do Fundão, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
| | | | - Richard A. Fariña
- Departamento de Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
- Servicio Académico Universitario y Centro de Estudios Paleontológicos (SAUCE-P), Universidad de la República, Santa Isabel s/n, 91500 Sauce, Departamento de Canelones, Uruguay
| | - Michael Hofreiter
- Institute for Biochemistry and Biology, University of Potsdam, Karl-Liebknecht-Str. 24-25, 14476 Potsdam, Germany
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Domínguez-Rodrigo M, Baquedano E, Varela L, Tambusso PS, Melián MJ, Fariña RA. Deep classification of cut-marks on bones from Arroyo del Vizcaíno (Uruguay). Proc Biol Sci 2021; 288:20210711. [PMID: 34256002 PMCID: PMC8277477 DOI: 10.1098/rspb.2021.0711] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 06/18/2021] [Indexed: 11/12/2022] Open
Abstract
The earliest widely accepted presence of humans in America dates to approximately 17.5 cal kyr BP, at the end of the Last Glacial Maximum (LGM). Among other evidence, this presence is attested by stone tools and associated cut-marks and other bone surface modifications (BSM), interpreted as the result of the consumption of animals by humans. Claims of an older human presence in the continent have been made based on the proposed anthropogenic modification of faunal remains; however, these have been controversial due to the highly subjective nature of the interpretations. Here, we employ advanced deep learning algorithms to objectively increase the accuracy of BSM identification on bones. With several models that exhibit BSM classification accuracies greater than 94%, we use ensemble learning techniques to robustly classify a selected sample of BSM from the approximately 30 kyr BP site of Arroyo del Vizcaíno, Uruguay. Our results confidently show the presence of cut-marks imparted by stone tools on bones at the site. This result supports an earlier presence of humans in the American continent, expanding additional genetic and archaeological evidence of a human LGM and pre-LGM presence in the continent.
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Affiliation(s)
- Manuel Domínguez-Rodrigo
- Instituto de Evolución en África (IDEA), Covarrubias 36, 28010 Madrid, Spain
- Área de Prehistoria, Departamento de Historia y Filosofía, Universidad de Alcalá, Alcalá de Henares, Spain
| | - Enrique Baquedano
- Instituto de Evolución en África (IDEA), Covarrubias 36, 28010 Madrid, Spain
- Museo Arqueológico de la Comunidad de Madrid, Plaza de las Bernardas s/n, Alcalá de Henares, Madrid, Spain
| | - Luciano Varela
- Departamento de Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
- Servicio Académico Universitario y Centro de Estudios Paleontológicos (SAUCE-P), Universidad de la República, Santa Isabel s/n, 91500 Sauce, Departamento de Canelones, Uruguay
| | - P. Sebastián Tambusso
- Departamento de Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
- Servicio Académico Universitario y Centro de Estudios Paleontológicos (SAUCE-P), Universidad de la República, Santa Isabel s/n, 91500 Sauce, Departamento de Canelones, Uruguay
| | - María Julia Melián
- Departamento de Arqueología, Facultad de Humanidades y Ciencias de la Educación, Universidad de la República, Uruguay 1695, 11200 Montevideo, Uruguay
| | - Richard A. Fariña
- Departamento de Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
- Servicio Académico Universitario y Centro de Estudios Paleontológicos (SAUCE-P), Universidad de la República, Santa Isabel s/n, 91500 Sauce, Departamento de Canelones, Uruguay
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4
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Boëda E, Ramos M, Pérez A, Hatté C, Lahaye C, Pino M, Hérisson D, Clemente-Conte I, Fontugne M, Guérin G, Villagran X, Santos JC, Costa L, Germond L, Ahmed-Delacroix NE, Da Costa A, Borges C, Hoeltz S, Felice G, Gluchy M, van Havre G, Griggo C, Lucas L, de Souza I, Viana S, Strauss A, Kerner J, Guidon N. 24.0 kyr cal BP stone artefact from Vale da Pedra Furada, Piauí, Brazil: Techno-functional analysis. PLoS One 2021; 16:e0247965. [PMID: 33690652 PMCID: PMC7946292 DOI: 10.1371/journal.pone.0247965] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 02/16/2021] [Indexed: 11/29/2022] Open
Abstract
Current archaeological paradigm proposes that the first peopling of the Americas does not exceed the Last Glacial Maximum period. In this context, the acceptance of the anthropogenic character of the earliest stone artefacts generally rests on the presence of projectile points considered no more as typocentric but as typognomonic, since it allows, by itself, to certify the human character of the other associated artefacts. In other words, without this presence, nothing is certain. Archaeological research at Piauí (Brazil) attests to a Pleistocene human presence between 41 and 14 cal kyr BP, without any record of lithic projectile points. Here, we report the discovery and interpretation of an unusual stone artefact in the Vale da Pedra Furada site, in a context dating back to 24 cal kyr BP. The knapping stigmata and macroscopic use-wear traces reveal a conception centred on the configuration of double bevels and the production in the same specimen of at least two successive artefacts with probably different functions. This piece unambiguously presents an anthropic character and reveals a technical novelty during the Pleistocene occupation of South America.
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Affiliation(s)
- Eric Boëda
- ArScAn-Équipe AnTET, UMR 7041, CNRS, Université Paris Nanterre (UPN), Nanterre, France
- Department of Anthropology, UFR SSA, Université Paris Nanterre (UPN), Nanterre, France
- * E-mail:
| | - Marcos Ramos
- PPGArq-Museu Nacional, Universidade Federal do Rio de Janeiro (UFRJ), Rio de Janeiro, Brazil
| | - Antonio Pérez
- ArScAn-Équipe AnTET, UMR 7041, CNRS, Université Paris Nanterre (UPN), Nanterre, France
- Institut français d’études andines (IFEA), Lima, Peru
| | - Christine Hatté
- LSCE/LAMPEA, UMR 8212, CNRS, CEA UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Christelle Lahaye
- IRAMAT-CRP2A, UMR 5060, CNRS, Bordeaux Montaigne University, Pessac, France
| | - Mario Pino
- Instituto de Ciencias de la Tierra and TAQUACH, Universidad Austral de Chile, Valdivia, Chile
| | - David Hérisson
- ArScAn-Équipe AnTET, UMR 7041, CNRS, Université Paris Nanterre (UPN), Nanterre, France
| | | | - Michel Fontugne
- LSCE/LAMPEA, UMR 8212, CNRS, CEA UVSQ, Université Paris-Saclay, Gif-sur-Yvette, France
| | - Guillaume Guérin
- IRAMAT-CRP2A, UMR 5060, CNRS, Bordeaux Montaigne University, Pessac, France
| | - Ximena Villagran
- MAE–Museu de Arqueologia e Etnologia, Universidade de São Paulo (USP), São Paulo, Brazil
| | - Janaina C. Santos
- Universidade Federal do Vale do São Francisco (UNIVASF), Petrolina, Brazil
| | - Lucas Costa
- Universidade Federal do Piauí (UFPI), Teresina, Brazil
| | - Lucie Germond
- ArScAn-Équipe AnTET, UMR 7041, CNRS, Université Paris Nanterre (UPN), Nanterre, France
| | | | - Amelie Da Costa
- ArScAn-Équipe AnTET, UMR 7041, CNRS, Université Paris Nanterre (UPN), Nanterre, France
| | - Carolina Borges
- Instituto do Patrimonio Histórico e Artístico Nacional (IPHAN), Piauí, Brazil
| | | | - Gisele Felice
- Universidade Federal do Vale do São Francisco (UNIVASF), Petrolina, Brazil
- Fundação Museu do Homem Americano (FUMDHAM), São Raimundo Nonato, Piauí, Brazil
| | - María Gluchy
- Universidade Federal do Rio Grande (FURG), Rio Grande, Brazil
| | | | - Christophe Griggo
- EDYTEM UMR 5204 CNRS, Université Savoie Mont Blanc, Le Bourget-du-Lac, France
| | - Livia Lucas
- Universidade Federal de Sergipe (UFS), Sergipe, Brazil
| | | | - Sibeli Viana
- Pontificia Universidade Católica de Goiás (PUC-GO), Instituto Goiano de Pré-História e Antropologia (IGPA), Goiânia, Brazil
| | - André Strauss
- MAE–Museu de Arqueologia e Etnologia, Universidade de São Paulo (USP), São Paulo, Brazil
| | - Jennifer Kerner
- Department of Anthropology, UFR SSA, Université Paris Nanterre (UPN), Nanterre, France
| | - Niède Guidon
- Fundação Museu do Homem Americano (FUMDHAM), São Raimundo Nonato, Piauí, Brazil
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5
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Prates L, Politis GG, Perez SI. Rapid radiation of humans in South America after the last glacial maximum: A radiocarbon-based study. PLoS One 2020; 15:e0236023. [PMID: 32697794 PMCID: PMC7375534 DOI: 10.1371/journal.pone.0236023] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2019] [Accepted: 06/28/2020] [Indexed: 11/18/2022] Open
Abstract
The early peopling of the Americas has been one of the most hotly contested topics in American anthropology and a research issue that draws archaeologists into a multidisciplinary debate. In South America, although the background data on this issue has increased exponentially in recent decades, the core questions related to the temporal and spatial patterns of the colonization process remain open. In this paper we tackle these questions in the light of the quantitative analysis of a screened radiocarbon database of more than 1600 early dates. We explore the frequency of radiocarbon dates as proxies for assessing population growth; and define a reliable and statistically well supported lower chronological bound (not to the exact date) for the earliest human arrival. Our results suggest that the earliest chronological threshold for the peopling of South America should be between 16,600 and 15,100, with a mean estimated date ~ 15,500 cal BP (post Last Glacial Maximum). Population would have grown until the end of Antarctic Cold Reversal stadial ~12,500 cal BP at the time of the main extinctions of megafauna–, when the increase rate slows, probably as a result of the changes that occurred in the trophic niche of humans.
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Affiliation(s)
- Luciano Prates
- Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
- División Arqueología, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, La Plata, Argentina
- * E-mail:
| | - Gustavo G. Politis
- Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
- Instituto de Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano (CONICET), Universidad Nacional del Centro de la Provincia de Buenos Aires, Olavarría, Argentina
| | - S. Ivan Perez
- Consejo Nacional de Investigaciones Científicas y Técnicas, Buenos Aires, Argentina
- División Antropología, Facultad de Ciencias Naturales y Museo, Universidad Nacional de La Plata, La Plata, Argentina
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6
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Gregariousness in the giant sloth Lestodon (Xenarthra): multi-proxy approach of a bonebed from the Last Maximum Glacial of Argentine Pampas. Sci Rep 2020; 10:10955. [PMID: 32616813 PMCID: PMC7331707 DOI: 10.1038/s41598-020-67863-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2020] [Accepted: 06/11/2020] [Indexed: 11/15/2022] Open
Abstract
Megamammals constituted an important component in the Pleistocene faunal communities of South America. Paleobiological and paleoecological studies involving different megamammal taxa have increased significantly in the last years, but there are still several poorly-known issues of its life history. In this work, we analyze an assemblage composed of 13 individuals of different ontogenetic stages, and possibly different sex, belonging to the giant ground sloth Lestodon armatus (Xenarthra, Folivora), recovered from Playa del Barco site (Pampean Region, Argentina). A dating of 19,849 years Cal BP allows assigning this assemblage to a period of the MIS (Marine Isotope Stage) 2 related to the end of the Last Glacial Maximum. Based on multiple lines of research (e.g. taphonomy, paleopathology, osteohistology, isotopy), we interpret the origin of the assemblage and diverse paleobiological and paleoecological aspects (e.g. social behavior, ontogenetic changes, sexual dimorphism, diseases, resource and habitat use, trophic relationships) of L. armatus. Evidence suggests that the assemblage was formed by a local single event of catastrophic mortality, which affected different members of a social group. This record represents the first accurate evidence of gregariousness for this ground sloth, providing new data on a poorly-known behavior among extinct Folivora.
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7
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Potential Distribution of Fossil Xenarthrans in South America during the Late Pleistocene: co-Occurrence and Provincialism. J MAMM EVOL 2017. [DOI: 10.1007/s10914-017-9406-9] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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8
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Mammals in Last 30 to 7 ka Interval (Late Pleistocene-Early Holocene) in Southern Uruguay (Santa Lucía River Basin): Last Occurrences, Climate, and Biogeography. J MAMM EVOL 2017. [DOI: 10.1007/s10914-017-9380-2] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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9
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Politis GG, Gutiérrez MA, Rafuse DJ, Blasi A. The Arrival of Homo sapiens into the Southern Cone at 14,000 Years Ago. PLoS One 2016; 11:e0162870. [PMID: 27683248 PMCID: PMC5040268 DOI: 10.1371/journal.pone.0162870] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2016] [Accepted: 08/30/2016] [Indexed: 11/30/2022] Open
Abstract
The Arroyo Seco 2 site contains a rich archaeological record, exceptional for South America, to explain the expansion of Homo sapiens into the Americas and their interaction with extinct Pleistocene mammals. The following paper provides a detailed overview of material remains found in the earliest cultural episodes at this multi-component site, dated between ca. 12,170 14C yrs B.P. (ca. 14,064 cal yrs B.P.) and 11,180 14C yrs B.P. (ca. 13,068 cal yrs B.P.). Evidence of early occupations includes the presence of lithic tools, a concentration of Pleistocene species remains, human-induced fractured animal bones, and a selection of skeletal parts of extinct fauna. The occurrence of hunter-gatherers in the Southern Cone at ca. 14,000 cal yrs B.P. is added to the growing list of American sites that indicate a human occupation earlier than the Clovis dispersal episode, but posterior to the onset of the deglaciation of the Last Glacial Maximum (LGM) in the North America.
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Affiliation(s)
- Gustavo G. Politis
- Instituto de Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano (INCUAPA-CONICET), Facultad de Ciencias Sociales, Universidad Nacional del Centro de la Provincia de Buenos Aires, Olavarría, Buenos Aires, Argentina
| | - María A. Gutiérrez
- Instituto de Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano (INCUAPA-CONICET), Facultad de Ciencias Sociales, Universidad Nacional del Centro de la Provincia de Buenos Aires, Olavarría, Buenos Aires, Argentina
| | - Daniel J. Rafuse
- Instituto de Investigaciones Arqueológicas y Paleontológicas del Cuaternario Pampeano (INCUAPA-CONICET), Facultad de Ciencias Sociales, Universidad Nacional del Centro de la Provincia de Buenos Aires, Olavarría, Buenos Aires, Argentina
- * E-mail:
| | - Adriana Blasi
- Comisión de Investigaciones Científica de la Provincia de Buenos Aires (CIC), Museo de Ciencias Naturales, Universidad Nacional de La Plata, La Plata, Buenos Aires, Argentina
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10
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Pires MM, Koch PL, Fariña RA, de Aguiar MAM, dos Reis SF, Guimarães PR. Pleistocene megafaunal interaction networks became more vulnerable after human arrival. Proc Biol Sci 2016; 282:rspb.2015.1367. [PMID: 26336175 DOI: 10.1098/rspb.2015.1367] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
The end of the Pleistocene was marked by the extinction of almost all large land mammals worldwide except in Africa. Although the debate on Pleistocene extinctions has focused on the roles of climate change and humans, the impact of perturbations depends on properties of ecological communities, such as species composition and the organization of ecological interactions. Here, we combined palaeoecological and ecological data, food-web models and community stability analysis to investigate if differences between Pleistocene and modern mammalian assemblages help us understand why the megafauna died out in the Americas while persisting in Africa. We show Pleistocene and modern assemblages share similar network topology, but differences in richness and body size distributions made Pleistocene communities significantly more vulnerable to the effects of human arrival. The structural changes promoted by humans in Pleistocene networks would have increased the likelihood of unstable dynamics, which may favour extinction cascades in communities facing extrinsic perturbations. Our findings suggest that the basic aspects of the organization of ecological communities may have played an important role in major extinction events in the past. Knowledge of community-level properties and their consequences to dynamics may be critical to understand past and future extinctions.
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Affiliation(s)
- Mathias M Pires
- Departamento de Ecologia, Instituto de Biociências, Universidade de São Paulo, São Paulo 05508-090, Brazil
| | - Paul L Koch
- Department of Earth and Planetary Sciences, University of California, Santa Cruz, CA 95064, USA
| | - Richard A Fariña
- Sección Paleontología, Facultad de Ciencias, Universidad de la República, Montevideo 11400, Uruguay
| | - Marcus A M de Aguiar
- Departamento de Física da Matéria Condensada, Instituto de Física 'Gleb Wataghin', 13083-862 Campinas, São Paulo, Brazil
| | - Sérgio F dos Reis
- Departamento de Biologia Animal, Instituto de Biologia, Universidade Estadual de Campinas, 13083-862 Campinas, São Paulo, Brazil
| | - Paulo R Guimarães
- Departamento de Ecologia, Instituto de Biociências, Universidade de São Paulo, São Paulo 05508-090, Brazil
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11
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Buckley M, Fariña RA, Lawless C, Tambusso PS, Varela L, Carlini AA, Powell JE, Martinez JG. Collagen Sequence Analysis of the Extinct Giant Ground Sloths Lestodon and Megatherium. PLoS One 2015; 10:e0139611. [PMID: 26540101 PMCID: PMC4634953 DOI: 10.1371/journal.pone.0139611] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2015] [Accepted: 09/14/2015] [Indexed: 11/19/2022] Open
Abstract
For over 200 years, fossils of bizarre extinct creatures have been described from the Americas that have ranged from giant ground sloths to the ‘native’ South American ungulates, groups of mammals that evolved in relative isolation on South America. Ground sloths belong to the South American xenarthrans, a group with modern although morphologically and ecologically very different representatives (anteaters, armadillos and sloths), which has been proposed to be one of the four main eutherian clades. Recently, proteomics analyses of bone collagen have recently been used to yield a molecular phylogeny for a range of mammals including the unusual ‘Malagasy aardvark’ shown to be most closely related to the afrotherian tenrecs, and the south American ungulates supporting their morphological association with condylarths. However, proteomics results generate partial sequence information that could impact upon the phylogenetic placement that has not been appropriately tested. For comparison, this paper examines the phylogenetic potential of proteomics-based sequencing through the analysis of collagen extracted from two extinct giant ground sloths, Lestodon and Megatherium. The ground sloths were placed as sister taxa to extant sloths, but with a closer relationship between Lestodon and the extant sloths than the basal Megatherium. These results highlight that proteomics methods could yield plausible phylogenies that share similarities with other methods, but have the potential to be more useful in fossils beyond the limits of ancient DNA survival.
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Affiliation(s)
- Michael Buckley
- Faculty of Life Sciences, Manchester Interdisciplinary Biocentre, The University of Manchester, Manchester, United Kingdom
- * E-mail:
| | - Richard A. Fariña
- Sección Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, Montevideo, Uruguay
| | - Craig Lawless
- Michael Smith Building, The University of Manchester, Manchester, United Kingdom
| | - P. Sebastián Tambusso
- Sección Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, Montevideo, Uruguay
| | - Luciano Varela
- Sección Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, Montevideo, Uruguay
| | - Alfredo A. Carlini
- Facultad de Ciencias Naturales y Museo, Museo de La Plata, Buenos Aires, Argentina
| | - Jaime E. Powell
- Facultad de Ciencias Naturales, Universidad Nacional de Tucumán, Tucumán Province, Argentina
| | - Jorge G. Martinez
- Instituto Superior de Estudios Sociales-CONICET, Instituto de Arqueología y Museo-UNT, Tucumán Province, Argentina
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12
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Sans M, Figueiro G, Hughes CE, Lindo J, Hidalgo PC, Malhi RS. A South American Prehistoric Mitogenome: Context, Continuity, and the Origin of Haplogroup C1d. PLoS One 2015; 10:e0141808. [PMID: 26509686 PMCID: PMC4625051 DOI: 10.1371/journal.pone.0141808] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2015] [Accepted: 10/13/2015] [Indexed: 12/18/2022] Open
Abstract
Based on mitochondrial DNA (mtDNA), it has been estimated that at least 15 founder haplogroups peopled the Americas. Subhaplogroup C1d3 was defined based on the mitogenome of a living individual from Uruguay that carried a lineage previously identified in hypervariable region I sequences from ancient and modern Uruguayan individuals. When complete mitogenomes were studied, additional substitutions were found in the coding region of the mitochondrial genome. Using a complete ancient mitogenome and three modern mitogenomes, we aim to clarify the ancestral state of subhaplogroup C1d3 and to better understand the peopling of the region of the Río de la Plata basin, as well as of the builders of the mounds from which the ancient individuals were recovered. The ancient mitogenome, belonging to a female dated to 1,610±46 years before present, was identical to the mitogenome of one of the modern individuals. All individuals share the mutations defining subhaplogroup C1d3. We estimated an age of 8,974 (5,748–12,261) years for the most recent common ancestor of C1d3, in agreement with the initial peopling of the geographic region. No individuals belonging to the defined lineage were found outside of Uruguay, which raises questions regarding the mobility of the prehistoric inhabitants of the country. Moreover, the present study shows the continuity of Native lineages over at least 6,000 years.
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Affiliation(s)
- Mónica Sans
- Departamento de Antropología Biológica, Facultad de Humanidades y Ciencias de la Educación, Universidad de la República, Montevideo, Uruguay
| | - Gonzalo Figueiro
- Departamento de Antropología Biológica, Facultad de Humanidades y Ciencias de la Educación, Universidad de la República, Montevideo, Uruguay
| | - Cris E Hughes
- Department of Anthropology, University of Illinois, Urbana, Illinois, United States of America
| | - John Lindo
- Department of Anthropology, University of Illinois, Urbana, Illinois, United States of America
| | - Pedro C Hidalgo
- Departamento de Antropología Biológica, Facultad de Humanidades y Ciencias de la Educación, Universidad de la República, Montevideo, Uruguay
| | - Ripan S Malhi
- Department of Anthropology, University of Illinois, Urbana, Illinois, United States of America; Carl R Woese Institute for Genomic Biology, University of Illinois, Urbana, Illinois, United States of America
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Fariña RA, Tambusso PS, Varela L, Di Giacomo M, Musso M, Gascue A, Bracco R. Among others, cut-marks are archaeological evidence: reply to 'Archaeological evidences are still missing: a comment on Fariña et al. Arroyo del Vizcaíno Site, Uruguay' by Suárez et al. Proc Biol Sci 2015; 281:rspb.2014.1637. [PMID: 25297865 DOI: 10.1098/rspb.2014.1637] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Richard A Fariña
- Sección Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
| | - P Sebastián Tambusso
- Sección Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
| | - Luciano Varela
- Sección Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
| | - Mariana Di Giacomo
- Sección Paleontología, Facultad de Ciencias, Universidad de la República, Iguá 4225, 11400 Montevideo, Uruguay
| | - Marcos Musso
- Sección Geotécnica, Facultad de Ingeniería, Universidad de la República, Julio Herrera y Reissig 565, 11300 Montevideo, Uruguay
| | - Andrés Gascue
- Centro Universitario Regional Este, Universidad de la República, Burnett casi M. Chiossi (Campus Municipal), 20000 Maldonado, Uruguay
| | - Roberto Bracco
- Laboratorio C Cátedra de Radioquímica, Facultad de Química, Universidad de la República - Ministerio de Educación y Cultura, Gral. Flores 2124, 11200 Montevideo, Uruguay Departamento de Arqueología, Facultad de Humanidades y C. E., Universidad de la República. Centro Universitario Regional Este, Rocha, Uruguay
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Suárez R, Borrero LA, Borrazzo K, Ubilla M, Martínez S, Perea D. Archaeological evidences are still missing: a comment on Fariña et al. Arroyo del Vizcaíno site, Uruguay. Proc Biol Sci 2014; 281:rspb.2014.0449. [PMID: 25297857 DOI: 10.1098/rspb.2014.0449] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- Rafael Suárez
- Departamento Arqueología, Facultad de Humanidades y Ciencias de la Educación, Universidad de la República, Magallanes 1577, 11200 Montevideo, Uruguay
| | - Luis A Borrero
- IMHICIHU, CONICET, Saavedra 15, Piso 5, 1083 ACA Buenos Aires, Argentina
| | - Karen Borrazzo
- IMHICIHU, CONICET, Saavedra 15, Piso 5, 1083 ACA Buenos Aires, Argentina
| | - Martín Ubilla
- Departamento Evolución de Cuencas, Facultad de Ciencias, Universidad de la República Iguá 4225, 11400 Montevideo, Uruguay
| | - Sergio Martínez
- Departamento Evolución de Cuencas, Facultad de Ciencias, Universidad de la República Iguá 4225, 11400 Montevideo, Uruguay
| | - Daniel Perea
- Departamento Evolución de Cuencas, Facultad de Ciencias, Universidad de la República Iguá 4225, 11400 Montevideo, Uruguay
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