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Liu X, Song H, Chu D, Dai X, Wang F, Silvestro D. Heterogeneous selectivity and morphological evolution of marine clades during the Permian-Triassic mass extinction. Nat Ecol Evol 2024; 8:1248-1258. [PMID: 38862784 DOI: 10.1038/s41559-024-02438-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Accepted: 05/10/2024] [Indexed: 06/13/2024]
Abstract
Morphological disparity and taxonomic diversity are distinct measures of biodiversity, typically expected to evolve synergistically. However, evidence from mass extinctions indicates that they can be decoupled, and while mass extinctions lead to a drastic loss of diversity, their impact on disparity remains unclear. Here we evaluate the dynamics of morphological disparity and extinction selectivity across the Permian-Triassic mass extinction. We developed an automated approach, termed DeepMorph, for the extraction of morphological features from fossil images using a deep learning model and applied it to a high-resolution temporal dataset encompassing 599 genera across six marine clades. Ammonoids, brachiopods and ostracods experienced a selective loss of complex and ornamented forms, while bivalves, gastropods and conodonts did not experience morphologically selective extinctions. The presence and intensity of morphological selectivity probably reflect the variations in environmental tolerance thresholds among different clades. In clades affected by selective extinctions, the intensity of diversity loss promoted the loss of morphological disparity. Conversely, under non-selective extinctions, the magnitude of diversity loss had a negligible impact on disparity. Our results highlight that the Permian-Triassic mass extinction had heterogeneous morphological selective impacts across clades, offering new insights into how mass extinctions can reshape biodiversity and ecosystem structure.
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Affiliation(s)
- Xiaokang Liu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, China
- Department of Biology, University of Fribourg, Fribourg, Switzerland
| | - Haijun Song
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, China.
| | - Daoliang Chu
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, China
| | - Xu Dai
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, China
| | - Fengyu Wang
- State Key Laboratory of Biogeology and Environmental Geology, School of Earth Sciences, China University of Geosciences, Wuhan, China
| | - Daniele Silvestro
- Department of Biology, University of Fribourg, Fribourg, Switzerland
- Swiss Institute of Bioinformatics, Fribourg, Switzerland
- Gothenburg Global Biodiversity Centre, Department of Biological and Environmental Sciences, University of Gothenburg, Gothenburg, Sweden
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2
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Wilson CJ, Reitan T, Liow LH. Unveiling the underlying drivers of Phanerozoic marine diversification. Proc Biol Sci 2024; 291:20240165. [PMID: 38889777 DOI: 10.1098/rspb.2024.0165] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 03/26/2024] [Indexed: 06/20/2024] Open
Abstract
In investigating global patterns of biodiversity through deep time, many large-scale drivers of diversification have been proposed, both biotic and abiotic. However, few robust conclusions about these hypothesized effectors or their roles have been drawn. Here, we use a linear stochastic differential equation (SDE) framework to test for the presence of underlying drivers of diversification patterns before examining specific hypothesized drivers. Using a global dataset of observations of skeletonized marine fossils, we infer origination, extinction and sampling rates (collectively called fossil time series) throughout the Phanerozoic using a capture-mark-recapture approach. Using linear SDEs, we then compare models including and excluding hidden (i.e. unmeasured) drivers of these fossil time series. We find evidence of large-scale underlying drivers of marine Phanerozoic diversification rates and present quantitative characterizations of these. We then test whether changing global temperature, sea-level, marine sediment area or continental fragmentation could act as drivers of the fossil time series. We show that it is unlikely any of these four abiotic factors are the hidden drivers we identified, though there is evidence for correlative links between sediment area and origination/extinction rates. Our characterization of the hidden drivers of Phanerozoic diversification and sampling will aid in the search for their ultimate identities.
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Affiliation(s)
- Connor J Wilson
- Natural History Museum, University of Oslo, 0562 Oslo, Norway
- School of Geography and the Environment, University of Oxford, Oxford OX1 3QY, UK
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85719, USA
| | - Trond Reitan
- Natural History Museum, University of Oslo, 0562 Oslo, Norway
- Centre for Planetary Habitability, Department of Geosciences, University of Oslo, 0562 Oslo, Norway
| | - Lee Hsiang Liow
- Natural History Museum, University of Oslo, 0562 Oslo, Norway
- Centre for Planetary Habitability, Department of Geosciences, University of Oslo, 0562 Oslo, Norway
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3
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Kahanamoku-Meyer SS, Samuels-Fair M, Kamel SM, Stewart D, Wu B, Kahn LX, Titcomb M, Mei YA, Bridge RC, Li YS, Sinco C, Moreno J, Epino JT, Gonzalez-Marin G, Latt C, Fergus H, Duijnstee IAP, Finnegan S. An 800-year record of benthic foraminifer images and 2D morphometrics from the Santa Barbara Basin. Sci Data 2024; 11:144. [PMID: 38291058 PMCID: PMC10828449 DOI: 10.1038/s41597-024-02934-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Accepted: 01/09/2024] [Indexed: 02/01/2024] Open
Abstract
The Santa Barbara Basin is an extraordinary archive of environmental and ecological change, where varved sediments preserve microfossils that provide an annual to decadal record of the dynamics of surrounding ecosystems. Of the microfossils preserved in these sediments, benthic foraminifera are the most abundant seafloor-dwelling organisms. While they have been extensively utilized for geochemical and paleoceanographic work, studies of their morphology are lacking. Here we use a high-throughput imaging method (AutoMorph) designed to extract 2D data from photographic images of fossils to produce a large image and 2D shape dataset of recent benthic foraminifera from two core records sampled from the center of the Santa Barbara Basin that span an ~800-year-long interval during the Common Era (1249-2008 CE). Information on more than 36,000 objects is included, of which more than 22,000 are complete or partially-damaged benthic foraminifera. The dataset also includes other biogenic microfossils including ostracods, pteropods, diatoms, radiolarians, fish teeth, and shark dermal denticles. We describe our sample preparation, imaging, and identification techniques, and outline potential data uses.
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Affiliation(s)
- Sara S Kahanamoku-Meyer
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA.
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA.
| | - Maya Samuels-Fair
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
| | - Sarah M Kamel
- Department of Psychology, University of California at Berkeley, Berkeley, CA, 94720, USA
- Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Da'shaun Stewart
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Bryan Wu
- Department of Electrical Engineering and Computer Sciences, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Leah X Kahn
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA
- Department of Earth and Planetary Science, University of California at Berkeley, Berkeley, CA, 94720, USA
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
| | - Max Titcomb
- Scripps Institution of Oceanography, University of California at San Diego, La Jolla, CA, 92093, USA
| | - Yingyan Alyssa Mei
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
| | - R Cheyenne Bridge
- Department of Earth and Planetary Science, University of California at Berkeley, Berkeley, CA, 94720, USA
- College of Chemistry, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Yuerong Sophie Li
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Carolina Sinco
- Department of Molecular and Cell Biology, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Julissa Moreno
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Josef T Epino
- Department of Sociology, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Gerson Gonzalez-Marin
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
- Department of Earth and Planetary Science, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Chloe Latt
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Heather Fergus
- Department of Environmental Science, Policy, and Management, University of California at Berkeley, Berkeley, CA, 94720, USA
| | - Ivo A P Duijnstee
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
| | - Seth Finnegan
- Department of Integrative Biology and Museum of Paleontology, University of California at Berkeley, Berkeley, CA, 94720, USA
- School of Ocean and Earth Sciences and Technology, University of Hawai'i at Mānoa, Honolulu, HI, 96822, USA
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4
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Monarrez PM, Heim NA, Payne JL. Reduced strength and increased variability of extinction selectivity during mass extinctions. ROYAL SOCIETY OPEN SCIENCE 2023; 10:230795. [PMID: 37771968 PMCID: PMC10523066 DOI: 10.1098/rsos.230795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 08/29/2023] [Indexed: 09/30/2023]
Abstract
Two of the traits most often observed to correlate with extinction risk in marine animals are geographical range and body size. However, the relative effects of these two traits on extinction risk have not been investigated systematically for either background times or during mass extinctions. To close this knowledge gap, we measure and compare extinction selectivity of geographical range and body size of genera within five classes of benthic marine animals across the Phanerozoic using capture-mark-recapture models. During background intervals, narrow geographical range is strongly associated with greater extinction probability, whereas smaller body size is more weakly associated with greater extinction probability. During mass extinctions, the association between geographical range and extinction probability is reduced in every class and fully eliminated in some, whereas the association between body size and extinction probability varies in strength and direction across classes. While geographical range is universally the stronger predictor of survival during background intervals, variation among classes during mass extinction suggests a fundamental shift in extinction processes during these global catastrophes.
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Affiliation(s)
- Pedro M. Monarrez
- Department of Earth and Planetary Sciences, Stanford University, Stanford, CA 94305, USA
| | - Noel A. Heim
- Department of Earth and Climate Sciences, Tufts University, Medford, MA 02155, USA
| | - Jonathan L. Payne
- Department of Earth and Planetary Sciences, Stanford University, Stanford, CA 94305, USA
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5
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Lidgard S, Di Martino E, Zágoršek K, Liow LH. When fossil clades 'compete': local dominance, global diversification dynamics and causation. Proc Biol Sci 2021; 288:20211632. [PMID: 34547910 PMCID: PMC8456135 DOI: 10.1098/rspb.2021.1632] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Accepted: 08/26/2021] [Indexed: 01/14/2023] Open
Abstract
Examining the supposition that local-scale competition drives macroevolutionary patterns has become a familiar goal in fossil biodiversity studies. However, it is an elusive goal, hampered by inadequate confirmation of ecological equivalence and interactive processes between clades, patchy sampling, few comparative analyses of local species assemblages over long geological intervals, and a dearth of appropriate statistical tools. We address these concerns by reevaluating one of the classic examples of clade displacement in the fossil record, in which cheilostome bryozoans surpass the once dominant cyclostomes. Here, we analyse a newly expanded and vetted compilation of 40 190 fossil species occurrences to estimate cheilostome and cyclostome patterns of species proportions within assemblages, global genus richness and genus origination and extinction rates while accounting for sampling. Comparison of time-series models using linear stochastic differential equations suggests that inter-clade genus origination and extinction rates are causally linked to each other in a complex feedback relationship rather than by simple correlations or unidirectional relationships, and that these rates are not causally linked to changing within-assemblage proportions of cheilostome versus cyclostome species.
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Affiliation(s)
- Scott Lidgard
- Negaunee Integrative Research Center, Field Museum, 1400 S. Lake Shore Drive, Chicago, IL 60605 USA
| | | | - Kamil Zágoršek
- Department of Geography, Technical University of Liberec, Studentská 2, CZ-461 Liberec, Czech Republic
| | - Lee Hsiang Liow
- Natural History Museum, University of Oslo, Oslo, Norway
- Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Oslo, Norway
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6
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Holosteans contextualize the role of the teleost genome duplication in promoting the rise of evolutionary novelties in the ray-finned fish innate immune system. Immunogenetics 2021; 73:479-497. [PMID: 34510270 DOI: 10.1007/s00251-021-01225-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2021] [Accepted: 08/06/2021] [Indexed: 01/16/2023]
Abstract
Over 99% of ray-finned fishes (Actinopterygii) are teleosts, a clade that comprises half of all living vertebrate species that have diversified across virtually all fresh and saltwater ecosystems. This ecological breadth raises the question of how the immunogenetic diversity required to persist under heterogeneous pathogen pressures evolved. The teleost genome duplication (TGD) has been hypothesized as the evolutionary event that provided the substrate for rapid genomic evolution and innovation. However, studies of putative teleost-specific innate immune receptors have been largely limited to comparisons either among teleosts or between teleosts and distantly related vertebrate clades such as tetrapods. Here we describe and characterize the receptor diversity of two clustered innate immune gene families in the teleost sister lineage: Holostei (bowfin and gars). Using genomic and transcriptomic data, we provide a detailed investigation of the phylogenetic history and conserved synteny of gene clusters encoding diverse immunoglobulin domain-containing proteins (DICPs) and novel immune-type receptors (NITRs). These data demonstrate an ancient linkage of DICPs to the major histocompatibility complex (MHC) and reveal an evolutionary origin of NITR variable-joining (VJ) exons that predate the TGD by at least 50 million years. Further characterizing the receptor diversity of Holostean DICPs and NITRs illuminates a sequence diversity that rivals the diversity of these innate immune receptor families in many teleosts. Taken together, our findings provide important historical context for the evolution of these gene families that challenge prevailing expectations concerning the consequences of the TGD during actinopterygiian evolution.
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7
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Bazzi M, Campione NE, Ahlberg PE, Blom H, Kear BP. Tooth morphology elucidates shark evolution across the end-Cretaceous mass extinction. PLoS Biol 2021; 19:e3001108. [PMID: 34375335 PMCID: PMC8354442 DOI: 10.1371/journal.pbio.3001108] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2021] [Accepted: 07/05/2021] [Indexed: 02/05/2023] Open
Abstract
Sharks (Selachimorpha) are iconic marine predators that have survived multiple mass extinctions over geologic time. Their prolific fossil record is represented mainly by isolated shed teeth, which provide the basis for reconstructing deep time diversity changes affecting different selachimorph clades. By contrast, corresponding shifts in shark ecology, as measured through morphological disparity, have received comparatively limited analytical attention. Here, we use a geometric morphometric approach to comprehensively examine tooth morphologies in multiple shark lineages traversing the catastrophic end-Cretaceous mass extinction-this event terminated the Mesozoic Era 66 million years ago. Our results show that selachimorphs maintained virtually static levels of dental disparity in most of their constituent clades across the Cretaceous-Paleogene interval. Nevertheless, selective extinctions did impact apex predator species characterized by triangular blade-like teeth. This is particularly evident among lamniforms, which included the dominant Cretaceous anacoracids. Conversely, other groups, such as carcharhiniforms and orectolobiforms, experienced disparity modifications, while heterodontiforms, hexanchiforms, squaliforms, squatiniforms, and †synechodontiforms were not overtly affected. Finally, while some lamniform lineages disappeared, others underwent postextinction disparity increases, especially odontaspidids, which are typified by narrow-cusped teeth adapted for feeding on fishes. Notably, this increase coincides with the early Paleogene radiation of teleosts as a possible prey source, and the geographic relocation of disparity sampling "hotspots," perhaps indicating a regionally disjunct extinction recovery. Ultimately, our study reveals a complex morphological response to the end-Cretaceous mass extinction and highlights an event that influenced the evolution of modern sharks.
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Affiliation(s)
- Mohamad Bazzi
- Subdepartment of Evolution and Development, Department of Organismal Biology, Uppsala University, Uppsala, Sweden
| | - Nicolás E. Campione
- Palaeoscience Research Centre, School of Environmental and Rural Science, University of New England, Armidale, New South Wales, Australia
| | - Per E. Ahlberg
- Subdepartment of Evolution and Development, Department of Organismal Biology, Uppsala University, Uppsala, Sweden
| | - Henning Blom
- Subdepartment of Evolution and Development, Department of Organismal Biology, Uppsala University, Uppsala, Sweden
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8
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Enhanced fish production during a period of extreme global warmth. Nat Commun 2020; 11:5636. [PMID: 33159071 PMCID: PMC7648762 DOI: 10.1038/s41467-020-19462-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2020] [Accepted: 10/16/2020] [Indexed: 11/08/2022] Open
Abstract
Marine ecosystem models predict a decline in fish production with anthropogenic ocean warming, but how fish production equilibrates to warming on longer timescales is unclear. We report a positive nonlinear correlation between ocean temperature and pelagic fish production during the extreme global warmth of the Early Paleogene Period (62-46 million years ago [Ma]). Using data-constrained modeling, we find that temperature-driven increases in trophic transfer efficiency (the fraction of production passed up trophic levels) and primary production can account for the observed increase in fish production, while changes in predator-prey interactions cannot. These data provide new insight into upper-trophic-level processes constrained from the geological record, suggesting that long-term warming may support more productive food webs in subtropical pelagic ecosystems.
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9
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Hull PM, Bornemann A, Penman DE, Henehan MJ, Norris RD, Wilson PA, Blum P, Alegret L, Batenburg SJ, Bown PR, Bralower TJ, Cournede C, Deutsch A, Donner B, Friedrich O, Jehle S, Kim H, Kroon D, Lippert PC, Loroch D, Moebius I, Moriya K, Peppe DJ, Ravizza GE, Röhl U, Schueth JD, Sepúlveda J, Sexton PF, Sibert EC, Śliwińska KK, Summons RE, Thomas E, Westerhold T, Whiteside JH, Yamaguchi T, Zachos JC. On impact and volcanism across the Cretaceous-Paleogene boundary. Science 2020; 367:266-272. [PMID: 31949074 DOI: 10.1126/science.aay5055] [Citation(s) in RCA: 39] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Accepted: 12/05/2019] [Indexed: 11/02/2022]
Abstract
The cause of the end-Cretaceous mass extinction is vigorously debated, owing to the occurrence of a very large bolide impact and flood basalt volcanism near the boundary. Disentangling their relative importance is complicated by uncertainty regarding kill mechanisms and the relative timing of volcanogenic outgassing, impact, and extinction. We used carbon cycle modeling and paleotemperature records to constrain the timing of volcanogenic outgassing. We found support for major outgassing beginning and ending distinctly before the impact, with only the impact coinciding with mass extinction and biologically amplified carbon cycle change. Our models show that these extinction-related carbon cycle changes would have allowed the ocean to absorb massive amounts of carbon dioxide, thus limiting the global warming otherwise expected from postextinction volcanism.
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Affiliation(s)
- Pincelli M Hull
- Department of Geology and Geophysics, Yale University, New Haven, CT 06511, USA.
| | - André Bornemann
- Bundesanstalt für Geowissenschaften und Rohstoffe, 30655 Hannover, Germany
| | - Donald E Penman
- Department of Geology and Geophysics, Yale University, New Haven, CT 06511, USA
| | - Michael J Henehan
- Department of Geology and Geophysics, Yale University, New Haven, CT 06511, USA.,GFZ German Research Centre for Geosciences, 14473 Potsdam, Germany
| | - Richard D Norris
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA
| | - Paul A Wilson
- National Oceanography Centre Southampton, University of Southampton, Southampton SO14 3ZH, UK
| | - Peter Blum
- International Ocean Discovery Program, Texas A&M University, College Station, TX 77845, USA
| | - Laia Alegret
- Departamento de Ciencias de la Tierra and Instituto Universitario de Ciencias Ambientales, Universidad Zaragoza, 50009 Zaragoza, Spain
| | | | - Paul R Bown
- Department of Earth Sciences, University College London, London WC1E 6BT, UK
| | - Timothy J Bralower
- Department of Geosciences, Pennsylvania State University, University Park, PA 16802, USA
| | - Cecile Cournede
- CEREGE, Université Aix-Marseille, 13545 Aix en Provence, France.,Institute for Rock Magnetism, University of Minnesota, Minneapolis, MN 55455, USA
| | - Alexander Deutsch
- Institut für Planetologie, Universität Münster, 48149 Münster, Germany
| | - Barbara Donner
- MARUM - Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany
| | - Oliver Friedrich
- Institute of Earth Sciences, Heidelberg University, 69120 Heidelberg, Germany
| | - Sofie Jehle
- Institut für Geophysik und Geologie, Universität Leipzig, 04103 Leipzig, Germany
| | - Hojung Kim
- Department of Earth Sciences, University College London, London WC1E 6BT, UK
| | - Dick Kroon
- School of Geosciences, University of Edinburgh, Edinburgh EH8 9XP, UK
| | - Peter C Lippert
- Department of Geology & Geophysics, The University of Utah, Salt Lake City, UT 84112, USA
| | - Dominik Loroch
- Institut für Planetologie, Universität Münster, 48149 Münster, Germany
| | - Iris Moebius
- Institute of Earth Sciences, Heidelberg University, 69120 Heidelberg, Germany.,Department of Biogeochemical Systems, Max Planck Institute for Biogeochemistry, 07745 Jena, Germany
| | - Kazuyoshi Moriya
- Department of Earth Sciences, Waseda University, Shinjyuku-ku, Tokyo 169-8050, Japan
| | - Daniel J Peppe
- Department of Geosciences, Baylor University, Waco, TX 76798, USA
| | - Gregory E Ravizza
- Department of Earth Sciences, University of Hawai'i at Mānoa, Honolulu, HI 96822, USA
| | - Ursula Röhl
- MARUM - Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany
| | | | - Julio Sepúlveda
- Department of Geological Sciences and Institute of Arctic and Alpine Research, University of Colorado Boulder, Boulder, CO 80309, USA
| | - Philip F Sexton
- School of Environment, Earth and Ecosystem Sciences, The Open University, Milton Keynes MK7 6AA, UK
| | - Elizabeth C Sibert
- Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92093, USA.,Harvard Society of Fellows, Harvard University, Cambridge, MA 02138, USA.,Department of Earth and Planetary Sciences, Harvard University, Cambridge, MA 02138, USA
| | - Kasia K Śliwińska
- Department of Stratigraphy, Geological Survey of Denmark and Greenland (GEUS), DK-1350 Copenhagen K, Denmark
| | - Roger E Summons
- Department of Earth, Atmospheric and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
| | - Ellen Thomas
- Department of Geology and Geophysics, Yale University, New Haven, CT 06511, USA.,Department of Earth and Environmental Sciences, Wesleyan University, Middletown, CT 06459, USA
| | - Thomas Westerhold
- MARUM - Center for Marine Environmental Sciences, University of Bremen, 28359 Bremen, Germany
| | - Jessica H Whiteside
- National Oceanography Centre Southampton, University of Southampton, Southampton SO14 3ZH, UK
| | | | - James C Zachos
- Department of Earth and Planetary Sciences, University of California, Santa Cruz, CA 95064, USA
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10
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Capobianco A, Beckett HT, Steurbaut E, Gingerich PD, Carnevale G, Friedman M. Large-bodied sabre-toothed anchovies reveal unanticipated ecological diversity in early Palaeogene teleosts. ROYAL SOCIETY OPEN SCIENCE 2020; 7:192260. [PMID: 32537214 PMCID: PMC7277248 DOI: 10.1098/rsos.192260] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2019] [Accepted: 04/09/2020] [Indexed: 05/05/2023]
Abstract
Many modern groups of marine fishes first appear in the fossil record during the early Palaeogene (66-40 Ma), including iconic predatory lineages of spiny-rayed fishes that appear to have originated in response to ecological roles left empty after the Cretaceous/Palaeogene extinction. The hypothesis of extinction-mediated ecological release likewise predicts that other fish groups have adopted novel predatory ecologies. Here, we report remarkable trophic innovation in early Palaeogene clupeiforms (herrings and allies), a group whose modern representatives are generally small-bodied planktivores. Two forms, the early Eocene (Ypresian) †Clupeopsis from Belgium and a new genus from the middle Eocene (Lutetian) of Pakistan, bear conspicuous features indicative of predatory ecology, including large size, long gapes and caniniform dentition. Most remarkable is the presence of a single, massive vomerine fang offset from the midline in both. Numerous features of the neurocranium, suspensorium and branchial skeleton place these taxa on the engraulid (anchovy) stem as the earliest known representatives of the clade. The identification of large-bodied, piscivorous anchovies contributes to an emerging picture of a phylogenetically diverse guild of predatory ray-finned fishes in early Palaeogene marine settings, which include completely extinct lineages alongside members of modern marine groups and taxa that are today restricted to freshwater or deep-sea environments.
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Affiliation(s)
- Alessio Capobianco
- Department of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, USA
- Museum of Paleontology, University of Michigan, Ann Arbor, MI, USA
- Author for correspondence: Alessio Capobianco e-mail:
| | - Hermione T. Beckett
- Department of Earth Sciences, University of Oxford, Oxford, UK
- Department of Biology, King's High School for Girls, Warwick, UK
| | - Etienne Steurbaut
- Royal Belgian Institute of Natural Sciences, Brussels, Belgium
- Department of Earth and Environmental Sciences, KU Leuven, Leuven, Belgium
| | - Philip D. Gingerich
- Department of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, USA
- Museum of Paleontology, University of Michigan, Ann Arbor, MI, USA
| | - Giorgio Carnevale
- Dipartimento di Scienze della Terra, Università degli Studi di Torino, Torino, Italy
| | - Matt Friedman
- Department of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, USA
- Museum of Paleontology, University of Michigan, Ann Arbor, MI, USA
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Friedman M, Feilich KL, Beckett HT, Alfaro ME, Faircloth BC, Černý D, Miya M, Near TJ, Harrington RC. A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean. Proc Biol Sci 2019; 286:20191502. [PMID: 31506051 PMCID: PMC6742994 DOI: 10.1098/rspb.2019.1502] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Accepted: 08/14/2019] [Indexed: 11/12/2022] Open
Abstract
The fish clade Pelagiaria, which includes tunas as its most famous members, evolved remarkable morphological and ecological variety in a setting not generally considered conducive to diversification: the open ocean. Relationships within Pelagiaria have proven elusive due to short internodes subtending major lineages suggestive of rapid early divergences. Using a novel sequence dataset of over 1000 ultraconserved DNA elements (UCEs) for 94 of the 286 species of Pelagiaria (more than 70% of genera), we provide a time-calibrated phylogeny for this widely distributed clade. Some inferred relationships have clear precedents (e.g. the monophyly of 'core' Stromateoidei, and a clade comprising 'Gempylidae' and Trichiuridae), but others are unexpected despite strong support (e.g. Chiasmodontidae + Tetragonurus). Relaxed molecular clock analysis using node-based fossil calibrations estimates a latest Cretaceous origin for Pelagiaria, with crown-group families restricted to the Cenozoic. Estimated mean speciation rates decline from the origin of the group in the latest Cretaceous, although credible intervals for root and tip rates are broad and overlap in most cases, and there is higher-than-expected partitioning of body shape diversity (measured as fineness ratio) between clades concentrated during the Palaeocene-Eocene. By contrast, more direct measures of ecology show either no substantial deviation from a null model of diversification (diet) or patterns consistent with evolutionary constraint or high rates of recent change (depth habitat). Collectively, these results indicate a mosaic model of diversification. Pelagiarians show high morphological disparity and modest species richness compared to better-studied fish radiations in contrasting environments. However, this pattern is also apparent in other clades in open-ocean or deep-sea habitats, and suggests that comparative study of such groups might provide a more inclusive model of the evolution of diversity in fishes.
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Affiliation(s)
- Matt Friedman
- Museum of Paleontology, University of Michigan, Ann Arbor, MI, USA
- Department of Earth and Environmental Sciences, University of Michigan, Ann Arbor, MI, USA
- Department of Earth Sciences, University of Oxford, Oxford, UK
| | - Kara L. Feilich
- Museum of Paleontology, University of Michigan, Ann Arbor, MI, USA
| | | | - Michael E. Alfaro
- Department of Ecology and Evolutionary Biology, University of California at Los Angeles, Los Angeles, CA, USA
| | - Brant C. Faircloth
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
- Museum of Natural Science, Louisiana State University, Baton Rouge, LA, USA
| | - David Černý
- Department of Ecology and Evolutionary Biology, University of California at Los Angeles, Los Angeles, CA, USA
| | - Masaki Miya
- Natural History Museum and Institute, Chiba, Aoba-cho, Chuo-ku, Chiba, Japan
| | - Thomas J. Near
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT, USA
- Peabody Museum, Yale University, New Haven, CT, USA
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