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For: Wilcox AH, Delwart E, Díaz-Muñoz SL. Next-generation sequencing of dsRNA is greatly improved by treatment with the inexpensive denaturing reagent DMSO. Microb Genom 2020;5. [PMID: 31738702 PMCID: PMC6927307 DOI: 10.1099/mgen.0.000315] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]  Open
Number Cited by Other Article(s)
1
Zhai X, Gobbi A, Kot W, Krych L, Nielsen DS, Deng L. A single-stranded based library preparation method for virome characterization. MICROBIOME 2024;12:219. [PMID: 39449043 PMCID: PMC11515303 DOI: 10.1186/s40168-024-01935-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 09/17/2024] [Indexed: 10/26/2024]
2
Fernandez-Cassi X, Kohn T. Comparison of Three Viral Nucleic Acid Preamplification Pipelines for Sewage Viral Metagenomics. FOOD AND ENVIRONMENTAL VIROLOGY 2024;16:1-22. [PMID: 38647859 PMCID: PMC11422458 DOI: 10.1007/s12560-024-09594-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2023] [Accepted: 03/01/2024] [Indexed: 04/25/2024]
3
MATSUMURA R, KOBAYASHI D, ITOYAMA K, ISAWA H. Detection of novel coltivirus-related sequences in Haemaphysalis megaspinosa ticks collected from Kanagawa Prefecture, Japan. J Vet Med Sci 2024;86:866-871. [PMID: 38880612 PMCID: PMC11300128 DOI: 10.1292/jvms.24-0124] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2024] [Accepted: 06/01/2024] [Indexed: 06/18/2024]  Open
4
Griffiths CD, Shah M, Shao W, Borgman CA, Janes KA. Three Modes of Viral Adaption by the Heart. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.03.28.587274. [PMID: 38585853 PMCID: PMC10996681 DOI: 10.1101/2024.03.28.587274] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/09/2024]
5
Neira V, Melgarejo C, Urzúa-Encina C, Berrios F, Valdes V, Mor S, Brito-Rodriguez B, Ramirez-Toloza GA. Identification and characterization of porcine Rotavirus A in Chilean swine population. Front Vet Sci 2023;10:1240346. [PMID: 38026647 PMCID: PMC10652281 DOI: 10.3389/fvets.2023.1240346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2023] [Accepted: 10/04/2023] [Indexed: 12/01/2023]  Open
6
Nalçacı M, Karakuş M, Özbel Y, Özbilgin A, Töz S. Increasing the Sensitivity of Leishmania RNA Virus 2 (LRV2) Detection with a Modification in cDNA Synthesis. TURKIYE PARAZITOLOJII DERGISI 2022;46:86-90. [PMID: 35604183 DOI: 10.4274/tpd.galenos.2022.30074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
7
Kolundžija S, Cheng DQ, Lauro FM. RNA Viruses in Aquatic Ecosystems through the Lens of Ecological Genomics and Transcriptomics. Viruses 2022;14:702. [PMID: 35458432 PMCID: PMC9029791 DOI: 10.3390/v14040702] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 03/19/2022] [Accepted: 03/23/2022] [Indexed: 02/04/2023]  Open
8
Lee JY, Wing PAC, Gala DS, Noerenberg M, Järvelin AI, Titlow J, Zhuang X, Palmalux N, Iselin L, Thompson MK, Parton RM, Prange-Barczynska M, Wainman A, Salguero FJ, Bishop T, Agranoff D, James W, Castello A, McKeating JA, Davis I. Absolute quantitation of individual SARS-CoV-2 RNA molecules provides a new paradigm for infection dynamics and variant differences. eLife 2022;11:74153. [PMID: 35049501 PMCID: PMC8776252 DOI: 10.7554/elife.74153] [Citation(s) in RCA: 29] [Impact Index Per Article: 14.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Accepted: 12/21/2021] [Indexed: 12/11/2022]  Open
9
Hughes HR, Velez JO, Fitzpatrick K, Davis EH, Russell BJ, Lambert AJ, Staples JE, Brault AC. Genomic Evaluation of the Genus Coltivirus Indicates Genetic Diversity among Colorado Tick Fever Virus Strains and Demarcation of a New Species. Diseases 2021;9:92. [PMID: 34940030 PMCID: PMC8700517 DOI: 10.3390/diseases9040092] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2021] [Revised: 12/13/2021] [Accepted: 12/15/2021] [Indexed: 11/16/2022]  Open
10
Regnault B, Bigot T, Ma L, Pérot P, Temmam S, Eloit M. Deep Impact of Random Amplification and Library Construction Methods on Viral Metagenomics Results. Viruses 2021;13:v13020253. [PMID: 33562285 PMCID: PMC7915491 DOI: 10.3390/v13020253] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Revised: 01/27/2021] [Accepted: 02/03/2021] [Indexed: 12/16/2022]  Open
11
Unveiling Viruses Associated with Gastroenteritis Using a Metagenomics Approach. Viruses 2020;12:v12121432. [PMID: 33322135 PMCID: PMC7764520 DOI: 10.3390/v12121432] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2020] [Revised: 12/04/2020] [Accepted: 12/08/2020] [Indexed: 02/07/2023]  Open
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