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Murphy K, Muhairwe J, Schalekamp S, van Ginneken B, Ayakaka I, Mashaete K, Katende B, van Heerden A, Bosman S, Madonsela T, Gonzalez Fernandez L, Signorell A, Bresser M, Reither K, Glass TR. COVID-19 screening in low resource settings using artificial intelligence for chest radiographs and point-of-care blood tests. Sci Rep 2023; 13:19692. [PMID: 37952026 PMCID: PMC10640556 DOI: 10.1038/s41598-023-46461-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 11/01/2023] [Indexed: 11/14/2023] Open
Abstract
Artificial intelligence (AI) systems for detection of COVID-19 using chest X-Ray (CXR) imaging and point-of-care blood tests were applied to data from four low resource African settings. The performance of these systems to detect COVID-19 using various input data was analysed and compared with antigen-based rapid diagnostic tests. Participants were tested using the gold standard of RT-PCR test (nasopharyngeal swab) to determine whether they were infected with SARS-CoV-2. A total of 3737 (260 RT-PCR positive) participants were included. In our cohort, AI for CXR images was a poor predictor of COVID-19 (AUC = 0.60), since the majority of positive cases had mild symptoms and no visible pneumonia in the lungs. AI systems using differential white blood cell counts (WBC), or a combination of WBC and C-Reactive Protein (CRP) both achieved an AUC of 0.74 with a suggested optimal cut-off point at 83% sensitivity and 63% specificity. The antigen-RDT tests in this trial obtained 65% sensitivity at 98% specificity. This study is the first to validate AI tools for COVID-19 detection in an African setting. It demonstrates that screening for COVID-19 using AI with point-of-care blood tests is feasible and can operate at a higher sensitivity level than antigen testing.
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Affiliation(s)
- Keelin Murphy
- Radboud University Medical Center, 6525 GA, Nijmegen, The Netherlands.
| | | | - Steven Schalekamp
- Radboud University Medical Center, 6525 GA, Nijmegen, The Netherlands
| | - Bram van Ginneken
- Radboud University Medical Center, 6525 GA, Nijmegen, The Netherlands
| | - Irene Ayakaka
- SolidarMed, Partnerships for Health, Maseru, Lesotho
| | | | | | - Alastair van Heerden
- Centre for Community Based Research, Human Sciences Research Council, Pietermaritzburg, South Africa
- SAMRC/WITS Developmental Pathways for Health Research Unit, Department of Paediatrics, School of Clinical Medicine, Faculty of Health Sciences, University of the Witwatersrand, Johannesburg, Gauteng, South Africa
| | - Shannon Bosman
- Centre for Community Based Research, Human Sciences Research Council, Pietermaritzburg, South Africa
| | - Thandanani Madonsela
- Centre for Community Based Research, Human Sciences Research Council, Pietermaritzburg, South Africa
| | - Lucia Gonzalez Fernandez
- Department of Infectious Diseases and Hospital Epidemiology, University Hospital Basel, Basel, Switzerland
- SolidarMed, Partnerships for Health, Lucerne, Switzerland
| | - Aita Signorell
- Swiss Tropical and Public Health Institute, Allschwil, Switzerland
- University of Basel, Basel, Switzerland
| | - Moniek Bresser
- Swiss Tropical and Public Health Institute, Allschwil, Switzerland
- University of Basel, Basel, Switzerland
| | - Klaus Reither
- Swiss Tropical and Public Health Institute, Allschwil, Switzerland
- University of Basel, Basel, Switzerland
| | - Tracy R Glass
- Swiss Tropical and Public Health Institute, Allschwil, Switzerland
- University of Basel, Basel, Switzerland
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Ozsahin DU, Isa NA, Uzun B. The Capacity of Artificial Intelligence in COVID-19 Response: A Review in Context of COVID-19 Screening and Diagnosis. Diagnostics (Basel) 2022; 12:diagnostics12122943. [PMID: 36552949 PMCID: PMC9777320 DOI: 10.3390/diagnostics12122943] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Revised: 11/12/2022] [Accepted: 11/18/2022] [Indexed: 11/26/2022] Open
Abstract
Artificial intelligence (AI) has been shown to solve several issues affecting COVID-19 diagnosis. This systematic review research explores the impact of AI in early COVID-19 screening, detection, and diagnosis. A comprehensive survey of AI in the COVID-19 literature, mainly in the context of screening and diagnosis, was observed by applying the preferred reporting items for systematic reviews and meta-analyses (PRISMA) guidelines. Data sources for the years 2020, 2021, and 2022 were retrieved from google scholar, web of science, Scopus, and PubMed, with target keywords relating to AI in COVID-19 screening and diagnosis. After a comprehensive review of these studies, the results found that AI contributed immensely to improving COVID-19 screening and diagnosis. Some proposed AI models were shown to have comparable (sometimes even better) clinical decision outcomes, compared to experienced radiologists in the screening/diagnosing of COVID-19. Additionally, AI has the capacity to reduce physician work burdens and fatigue and reduce the problems of several false positives, associated with the RT-PCR test (with lower sensitivity of 60-70%) and medical imaging analysis. Even though AI was found to be timesaving and cost-effective, with less clinical errors, it works optimally under the supervision of a physician or other specialists.
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Affiliation(s)
- Dilber Uzun Ozsahin
- Department of Medical Diagnostic Imaging, College of Health Sciences, Sharjah University, Sharjah P.O. Box 27272, United Arab Emirates
- Operational Research Center in Healthcare, Near East University, TRNC Mersin 10, Nicosia 99138, Turkey
- Correspondence: (D.U.O.); (N.A.I.)
| | - Nuhu Abdulhaqq Isa
- Department of Biomedical Engineering, Near East University, TRNC Mersin 10, Nicosia 99138, Turkey
- Department of Biomedical Engineering, College of Health Science and Technology, Keffi 961101, Keffi Nasarawa State, Nigeria
- Correspondence: (D.U.O.); (N.A.I.)
| | - Berna Uzun
- Operational Research Center in Healthcare, Near East University, TRNC Mersin 10, Nicosia 99138, Turkey
- Department of Statistics, Carlos III Madrid University, 28903 Getafe, Madrid, Spain
- Department of Mathematics, Near East University, TRNC Mersin 10, Nicosia 99138, Turkey
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3
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Calibrated bagging deep learning for image semantic segmentation: A case study on COVID-19 chest X-ray image. PLoS One 2022; 17:e0276250. [DOI: 10.1371/journal.pone.0276250] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Accepted: 10/03/2022] [Indexed: 11/17/2022] Open
Abstract
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes coronavirus disease 2019 (COVID-19). Imaging tests such as chest X-ray (CXR) and computed tomography (CT) can provide useful information to clinical staff for facilitating a diagnosis of COVID-19 in a more efficient and comprehensive manner. As a breakthrough of artificial intelligence (AI), deep learning has been applied to perform COVID-19 infection region segmentation and disease classification by analyzing CXR and CT data. However, prediction uncertainty of deep learning models for these tasks, which is very important to safety-critical applications like medical image processing, has not been comprehensively investigated. In this work, we propose a novel ensemble deep learning model through integrating bagging deep learning and model calibration to not only enhance segmentation performance, but also reduce prediction uncertainty. The proposed method has been validated on a large dataset that is associated with CXR image segmentation. Experimental results demonstrate that the proposed method can improve the segmentation performance, as well as decrease prediction uncertainty.
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Costa YMG, Silva SA, Teixeira LO, Pereira RM, Bertolini D, Britto AS, Oliveira LS, Cavalcanti GDC. COVID-19 Detection on Chest X-ray and CT Scan: A Review of the Top-100 Most Cited Papers. SENSORS (BASEL, SWITZERLAND) 2022; 22:7303. [PMID: 36236402 PMCID: PMC9570662 DOI: 10.3390/s22197303] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 09/13/2022] [Accepted: 09/19/2022] [Indexed: 06/16/2023]
Abstract
Since the beginning of the COVID-19 pandemic, many works have been published proposing solutions to the problems that arose in this scenario. In this vein, one of the topics that attracted the most attention is the development of computer-based strategies to detect COVID-19 from thoracic medical imaging, such as chest X-ray (CXR) and computerized tomography scan (CT scan). By searching for works already published on this theme, we can easily find thousands of them. This is partly explained by the fact that the most severe worldwide pandemic emerged amid the technological advances recently achieved, and also considering the technical facilities to deal with the large amount of data produced in this context. Even though several of these works describe important advances, we cannot overlook the fact that others only use well-known methods and techniques without a more relevant and critical contribution. Hence, differentiating the works with the most relevant contributions is not a trivial task. The number of citations obtained by a paper is probably the most straightforward and intuitive way to verify its impact on the research community. Aiming to help researchers in this scenario, we present a review of the top-100 most cited papers in this field of investigation according to the Google Scholar search engine. We evaluate the distribution of the top-100 papers taking into account some important aspects, such as the type of medical imaging explored, learning settings, segmentation strategy, explainable artificial intelligence (XAI), and finally, the dataset and code availability.
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Affiliation(s)
- Yandre M. G. Costa
- Departamento de Informática, Universidade Estadual de Maringá, Maringá 87020-900, Brazil
| | - Sergio A. Silva
- Departamento de Informática, Universidade Estadual de Maringá, Maringá 87020-900, Brazil
| | - Lucas O. Teixeira
- Departamento de Informática, Universidade Estadual de Maringá, Maringá 87020-900, Brazil
| | | | - Diego Bertolini
- Departamento Acadêmico de Ciência da Computação, Universidade Tecnológica Federal do Paraná, Campo Mourão 87301-899, Brazil
| | - Alceu S. Britto
- Departmento de Ciência da Computação, Pontifícia Universidade Católica do Paraná, Curitiba 80215-901, Brazil
| | - Luiz S. Oliveira
- Departamento de Informática, Universidade Federal do Paraná, Curitiba 81531-980, Brazil
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Tan T, Das B, Soni R, Fejes M, Yang H, Ranjan S, Szabo DA, Melapudi V, Shriram K, Agrawal U, Rusko L, Herczeg Z, Darazs B, Tegzes P, Ferenczi L, Mullick R, Avinash G. Multi-modal trained artificial intelligence solution to triage chest X-ray for COVID-19 using pristine ground-truth, versus radiologists. Neurocomputing 2022; 485:36-46. [PMID: 35185296 PMCID: PMC8847079 DOI: 10.1016/j.neucom.2022.02.040] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 12/25/2021] [Accepted: 02/11/2022] [Indexed: 11/05/2022]
Abstract
The front-line imaging modalities computed tomography (CT) and X-ray play important roles for triaging COVID patients. Thoracic CT has been accepted to have higher sensitivity than a chest X-ray for COVID diagnosis. Considering the limited access to resources (both hardware and trained personnel) and issues related to decontamination, CT may not be ideal for triaging suspected subjects. Artificial intelligence (AI) assisted X-ray based application for triaging and monitoring require experienced radiologists to identify COVID patients in a timely manner with the additional ability to delineate and quantify the disease region is seen as a promising solution for widespread clinical use. Our proposed solution differs from existing solutions presented by industry and academic communities. We demonstrate a functional AI model to triage by classifying and segmenting a single chest X-ray image, while the AI model is trained using both X-ray and CT data. We report on how such a multi-modal training process improves the solution compared to single modality (X-ray only) training. The multi-modal solution increases the AUC (area under the receiver operating characteristic curve) from 0.89 to 0.93 for a binary classification between COVID-19 and non-COVID-19 cases. It also positively impacts the Dice coefficient (0.59 to 0.62) for localizing the COVID-19 pathology. To compare the performance of experienced readers to the AI model, a reader study is also conducted. The AI model showed good consistency with respect to radiologists. The DICE score between two radiologists on the COVID group was 0.53 while the AI had a DICE value of 0.52 and 0.55 when compared to the segmentation done by the two radiologists separately. From a classification perspective, the AUCs of two readers was 0.87 and 0.81 while the AUC of the AI is 0.93 based on the reader study dataset. We also conducted a generalization study by comparing our method to the-state-art methods on independent datasets. The results show better performance from the proposed method. Leveraging multi-modal information for the development benefits the single-modal inferencing.
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Affiliation(s)
- Tao Tan
- GE Healthcare, The Netherlands,Corresponding author
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Gour M, Jain S. Automated COVID-19 detection from X-ray and CT images with stacked ensemble convolutional neural network. Biocybern Biomed Eng 2021; 42:27-41. [PMID: 34908638 PMCID: PMC8654581 DOI: 10.1016/j.bbe.2021.12.001] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Revised: 12/02/2021] [Accepted: 12/02/2021] [Indexed: 12/21/2022]
Abstract
Automatic and rapid screening of COVID-19 from the radiological (X-ray or CT scan) images has become an urgent need in the current pandemic situation of SARS-CoV-2 worldwide. However, accurate and reliable screening of patients is challenging due to the discrepancy between the radiological images of COVID-19 and other viral pneumonia. So, in this paper, we design a new stacked convolutional neural network model for the automatic diagnosis of COVID-19 disease from the chest X-ray and CT images. In the proposed approach, different sub-models have been obtained from the VGG19 and the Xception models during the training. Thereafter, obtained sub-models are stacked together using softmax classifier. The proposed stacked CNN model combines the discriminating power of the different CNN’s sub-models and detects COVID-19 from the radiological images. In addition, we collect CT images to build a CT image dataset and also generate an X-ray images dataset by combining X-ray images from the three publicly available data repositories. The proposed stacked CNN model achieves a sensitivity of 97.62% for the multi-class classification of X-ray images into COVID-19, Normal and Pneumonia Classes and 98.31% sensitivity for binary classification of CT images into COVID-19 and no-Finding classes. Our proposed approach shows superiority over the existing methods for the detection of the COVID-19 cases from the X-ray radiological images.
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Affiliation(s)
- Mahesh Gour
- Maulana Azad National Institute of Technology, Bhopal, India
| | - Sweta Jain
- Maulana Azad National Institute of Technology, Bhopal, India
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Maguolo G, Nanni L. A critic evaluation of methods for COVID-19 automatic detection from X-ray images. AN INTERNATIONAL JOURNAL ON INFORMATION FUSION 2021; 76:1-7. [PMID: 33967656 PMCID: PMC8086233 DOI: 10.1016/j.inffus.2021.04.008] [Citation(s) in RCA: 76] [Impact Index Per Article: 25.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2021] [Revised: 04/08/2021] [Accepted: 04/11/2021] [Indexed: 05/08/2023]
Abstract
In this paper, we compare and evaluate different testing protocols used for automatic COVID-19 diagnosis from X-Ray images in the recent literature. We show that similar results can be obtained using X-Ray images that do not contain most of the lungs. We are able to remove the lungs from the images by turning to black the center of the X-Ray scan and training our classifiers only on the outer part of the images. Hence, we deduce that several testing protocols for the recognition are not fair and that the neural networks are learning patterns in the dataset that are not correlated to the presence of COVID-19. Finally, we show that creating a fair testing protocol is a challenging task, and we provide a method to measure how fair a specific testing protocol is. In the future research we suggest to check the fairness of a testing protocol using our tools and we encourage researchers to look for better techniques than the ones that we propose.
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Affiliation(s)
- Gianluca Maguolo
- University of Padova, Department of Information Engineering, Via Gradenigo 6, 35131, Padova, Italy
| | - Loris Nanni
- University of Padova, Department of Information Engineering, Via Gradenigo 6, 35131, Padova, Italy
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8
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López-Cabrera JD, Orozco-Morales R, Portal-Díaz JA, Lovelle-Enríquez O, Pérez-Díaz M. Current limitations to identify covid-19 using artificial intelligence with chest x-ray imaging (part ii). The shortcut learning problem. HEALTH AND TECHNOLOGY 2021; 11:1331-1345. [PMID: 34660166 PMCID: PMC8502237 DOI: 10.1007/s12553-021-00609-8] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Accepted: 10/05/2021] [Indexed: 12/12/2022]
Abstract
Since the outbreak of the COVID-19 pandemic, computer vision researchers have been working on automatic identification of this disease using radiological images. The results achieved by automatic classification methods far exceed those of human specialists, with sensitivity as high as 100% being reported. However, prestigious radiology societies have stated that the use of this type of imaging alone is not recommended as a diagnostic method. According to some experts the patterns presented in these images are unspecific and subtle, overlapping with other viral pneumonias. This report seeks to evaluate the analysis the robustness and generalizability of different approaches using artificial intelligence, deep learning and computer vision to identify COVID-19 using chest X-rays images. We also seek to alert researchers and reviewers to the issue of "shortcut learning". Recommendations are presented to identify whether COVID-19 automatic classification models are being affected by shortcut learning. Firstly, papers using explainable artificial intelligence methods are reviewed. The results of applying external validation sets are evaluated to determine the generalizability of these methods. Finally, studies that apply traditional computer vision methods to perform the same task are considered. It is evident that using the whole chest X-Ray image or the bounding box of the lungs, the image regions that contribute most to the classification appear outside of the lung region, something that is not likely possible. In addition, although the investigations that evaluated their models on data sets external to the training set, the effectiveness of these models decreased significantly, it may provide a more realistic representation as how the model will perform in the clinic. The results indicate that, so far, the existing models often involve shortcut learning, which makes their use less appropriate in the clinical setting.
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Affiliation(s)
- José Daniel López-Cabrera
- Centro de Investigaciones de La Informática, Facultad de Matemática, Física y Computación, Universidad Central “Marta Abreu” de Las Villas, Villa Clara, Santa Clara, Cuba
| | - Rubén Orozco-Morales
- Departamento de Control Automático, Facultad de Ingeniería Eléctrica, Universidad Central “Marta Abreu” de Las Villas, Villa Clara, Santa Clara, Cuba
| | - Jorge Armando Portal-Díaz
- Departamento de Control Automático, Facultad de Ingeniería Eléctrica, Universidad Central “Marta Abreu” de Las Villas, Villa Clara, Santa Clara, Cuba
| | - Orlando Lovelle-Enríquez
- Departamento de Imagenología, Hospital Comandante Manuel Fajardo Rivero, Villa Clara, Santa Clara, Cuba
| | - Marlén Pérez-Díaz
- Departamento de Control Automático, Facultad de Ingeniería Eléctrica, Universidad Central “Marta Abreu” de Las Villas, Villa Clara, Santa Clara, Cuba
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Mohanty F, Dora C. An optimized KELM approach for the diagnosis of COVID-19 from 2D-SSA reconstructed CXR Images. OPTIK 2021; 244:167572. [PMID: 34248209 PMCID: PMC8260491 DOI: 10.1016/j.ijleo.2021.167572] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Accepted: 06/30/2021] [Indexed: 05/17/2023]
Abstract
The COVID-19 is proved to be the most infectious disease of the current century with a high mortality rate world-wide. The current RT-PCR test standard for the diagnosis of COVID-19 is an invasive and time-consuming procedure, whereas the chest X-ray (CXR) images provide a non-invasive and time/cost-effective method for COVID-19 diagnosis. The current existing deep learning methods for the detection and diagnosis of CXR images provide biased results for the small size dataset available. Hence, in the present work, a conventional yet efficient method is proposed classifying the CXR images into COVID-19, Pneumonia, and Normal. The proposed approach pre-processes the CXR images using 2D singular spectrum analysis (SSA) for image reconstruction which enhances the feature inputs to the classifier. The features are extracted from the reconstructed images using a block-based GLCM approach. Then, a grasshopper-based Kernel extreme learning machine (KELM) is proposed which finds the optimal features and kernel parameters of KELM at the same instance. From the experimental analysis, it is seen that the present work outperforms that of other competent schemes in terms of classification accuracy with a minimal set of features extracted from the first 2 eigen components of the 2D-SSA reconstructed image with 5 × 5 decomposition.
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Affiliation(s)
- Figlu Mohanty
- School of Engineering & Technology, Centurion University of Technology & Management, Odisha, India
| | - Chinmayee Dora
- School of Engineering & Technology, Centurion University of Technology & Management, Odisha, India
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Saha R, Aich S, Tripathy S, Kim HC. Artificial Intelligence Is Reshaping Healthcare amid COVID-19: A Review in the Context of Diagnosis & Prognosis. Diagnostics (Basel) 2021; 11:1604. [PMID: 34573946 PMCID: PMC8471992 DOI: 10.3390/diagnostics11091604] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Revised: 08/28/2021] [Accepted: 09/01/2021] [Indexed: 12/24/2022] Open
Abstract
Preventing respiratory failure is crucial in a large proportion of COVID-19 patients infected with SARS-CoV-2 virus pneumonia termed as Novel Coronavirus Pneumonia (NCP). Rapid diagnosis and detection of high-risk patients for effective interventions have been shown to be troublesome. Using a large, computed tomography (CT) database, we developed an artificial intelligence (AI) parameter to diagnose NCP and distinguish it from other kinds of pneumonia and traditional controls. The literature was studied and analyzed from diverse assets which include Scopus, Nature medicine, IEEE, Google scholar, Wiley Library, and PubMed. The search terms used were 'COVID-19', 'AI', 'diagnosis', and 'prognosis'. To strengthen the overall performance of AI in COVID-19 diagnosis and prognosis, we segregated several components to perceive threats and opportunities, as well as their inter-dependencies that affect the healthcare sector. This paper seeks to pick out the crucial fulfillment of factors for AI with inside the healthcare sector in the Indian context. Using critical literature review and experts' opinion, a total of 11 factors affecting COVID-19 diagnosis and prognosis were detected, and we eventually used an interpretive structural model (ISM) to build a framework of interrelationships among the identified factors. Finally, the matrice d'impacts croisés multiplication appliquée á un classment (MICMAC) analysis resulted the driving and dependence powers of these identified factors. Our analysis will help healthcare stakeholders to realize the requirements for successful implementation of AI.
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Affiliation(s)
- Rajnandini Saha
- School of Biotechnology, KIIT Deemed to be University, Bhubaneswar 751024, Odisha, India;
| | | | - Sushanta Tripathy
- School of Mechanical Engineering, KIIT Deemed to be University, Bhubaneswar 751024, Odisha, India
| | - Hee-Cheol Kim
- Institute of Digital Anti-Aging Healthcare, College of AI Convergence, u-AHRC, Inje University, Gimhae 50834, Korea
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Ge C, Zhang L, Xie L, Kong R, Zhang H, Chang S. COVID-19 Imaging-based AI Research - A Literature Review. Curr Med Imaging 2021; 18:496-508. [PMID: 34473619 DOI: 10.2174/1573405617666210902103729] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Revised: 07/18/2021] [Accepted: 07/20/2021] [Indexed: 11/22/2022]
Abstract
BACKGROUND The new coronavirus disease 2019 (COVID-19) is spreading rapidly around the world. Artificial intelligence (AI) assisted identification and detection of diseases is an ef-fective method of medical diagnosis. OBJECTIVES To present recent advances in AI-assisted diagnosis of COVID-19, we introduce major aspects of AI in the process of diagnosing COVID-19. METHODS In this paper, we firstly cover the latest collection and processing methods of da-tasets of COVID-19. The processing methods mainly include building public datasets, transfer learning, unsupervised learning and weakly supervised learning, semi-supervised learning methods and so on. Secondly, we introduce the algorithm application and evaluation metrics of AI in medical imaging segmentation and automatic screening. Then, we introduce the quantifi-cation and severity assessment of infection in COVID-19 patients based on image segmenta-tion and automatic screening. Finally, we analyze and point out the current AI-assisted diagno-sis of COVID-19 problems, which may provide useful clues for future work. CONCLUSION AI is critical for COVID-19 diagnosis. Combining chest imaging with AI can not only save time and effort, but also provide more accurate and efficient medical diagnosis results.
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Affiliation(s)
- Cheng Ge
- Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou 213001, China
| | - Lili Zhang
- Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou 213001, China
| | - Liangxu Xie
- Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou 213001, China
| | - Ren Kong
- Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou 213001, China
| | - Hong Zhang
- School of Mathematics, China University of Mining and Technology, Xuzhou, Jiangsu 221116, China
| | - Shan Chang
- Institute of Bioinformatics and Medical Engineering, School of Electrical and Information Engineering, Jiangsu University of Technology, Changzhou 213001, China
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Erdaw Y, Tachbele E. Machine Learning Model Applied on Chest X-Ray Images Enables Automatic Detection of COVID-19 Cases with High Accuracy. Int J Gen Med 2021; 14:4923-4931. [PMID: 34483682 PMCID: PMC8409602 DOI: 10.2147/ijgm.s325609] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2021] [Accepted: 08/05/2021] [Indexed: 12/21/2022] Open
Abstract
PURPOSE This research was designed to investigate the application of artificial intelligence (AI) in the rapid and accurate diagnosis of coronavirus disease 2019 (COVID-19) using digital chest X-ray images, and to develop a robust computer-aided application for the automatic classification of COVID-19 pneumonia from other pneumonia and normal images. MATERIALS AND METHODS A total of 1100 chest X-ray images were randomly selected from three different open sources, containing 300 X-ray images of confirmed COVID-19 patients, 400 images of other pneumonia patients, and 400 normal X-ray images. In this study, a classical machine learning approach was employed. The model was built using the support vector machine (SVM) classifier algorithm. The SVM was trained by 630 features obtained from the HOG descriptor, which was quantized into 30 orientation bins in the range between 0 and 360. The model was validated using a 10-fold cross-validation method. The performance of the model was evaluated using appropriate classification metrics, including sensitivity, specificity, area under the curve, positive predictive value, negative predictive value, kappa, and accuracy. RESULTS The multi-level classification model was able to distinguish COVID-19 patients with a sensitivity of 97.92% and specificity of 98.91%, for the internal testing or cross-validation. For the independent external testing, the model showed sensitivity of 95% and specificity of 98.13%, for distinguishing COVID-19 from other pneumonia and no-findings. The binary classification model was able to distinguish COVID-19 patients with a sensitivity of 99.58% and specificity of 99.69%, for the internal testing. For the independent external testing, the model showed a sensitivity of 98.33% and specificity of 100%, for distinguishing COVID-19 from normal images. CONCLUSION The model can achieve the rapid and accurate identification of COVID-19 patients from chest X-rays with more than 97% accuracy. This high accuracy and very rapid computer-aided diagnostic approach would be very helpful to control the pandemic.
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Affiliation(s)
- Yabsera Erdaw
- Electrical and Mechanical Engineering, Addis Ababa Science & Technology University, Addis Ababa, Ethiopia
| | - Erdaw Tachbele
- Nursing & Midwifery, College of Health Sciences, Addis Ababa University, Addis Ababa, Ethiopia
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Akyol K, Şen B. Automatic Detection of Covid-19 with Bidirectional LSTM Network Using Deep Features Extracted from Chest X-ray Images. Interdiscip Sci 2021; 14:89-100. [PMID: 34313974 PMCID: PMC8313418 DOI: 10.1007/s12539-021-00463-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Revised: 07/08/2021] [Accepted: 07/12/2021] [Indexed: 12/23/2022]
Abstract
Coronavirus disease, which comes up in China at the end of 2019 and showed different symptoms in people infected, affected millions of people. Computer-aided expert systems are needed due to the inadequacy of the reverse transcription-polymerase chain reaction kit, which is widely used in the diagnosis of this disease. Undoubtedly, expert systems that provide effective solutions to many problems will be very useful in the detection of Covid-19 disease, especially when unskilled personnel and financial deficiencies in underdeveloped countries are taken into consideration. In the literature, there are numerous machine learning approaches built with different classifiers in the detection of this disease. This paper proposes an approach based on deep learning which detects Covid-19 and no-finding cases using chest X-ray images. Here, the classification performance of the Bi-LSTM network on the deep features was compared with the Deep Neural Network within the frame of the fivefold cross-validation technique. Accuracy, sensitivity, specificity and precision metrics were used to evaluate the classification performance of the trained models. Bi-LSTM network presented better performance compare to DNN with 97.6% value of high accuracy despite the few numbers of Covid-19 images in the dataset. In addition, it is understood that concatenated deep features more meaningful than deep features obtained with pre-trained networks by one by, as well. Consequently, it is thought that the proposed study based on the Bi-LSTM network and concatenated deep features will be noteworthy in the design of highly sensitive automated Covid-19 monitoring systems.
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Affiliation(s)
- Kemal Akyol
- Department of Computer Engineering, Faculty of Engineering and Architecture, Kastamonu University, Kastamonu, Turkey.
| | - Baha Şen
- Department of Computer Engineering, Faculty of Engineering and Natural Sciences, Ankara Yıldırım Beyazıt University, Ankara, Turkey
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14
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Ahmed KB, Goldgof GM, Paul R, Goldgof DB, Hall LO. Discovery of a Generalization Gap of Convolutional Neural Networks on COVID-19 X-Rays Classification. IEEE ACCESS : PRACTICAL INNOVATIONS, OPEN SOLUTIONS 2021; 9:72970-72979. [PMID: 34178559 PMCID: PMC8224464 DOI: 10.1109/access.2021.3079716] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Accepted: 05/04/2021] [Indexed: 05/02/2023]
Abstract
A number of recent papers have shown experimental evidence that suggests it is possible to build highly accurate deep neural network models to detect COVID-19 from chest X-ray images. In this paper, we show that good generalization to unseen sources has not been achieved. Experiments with richer data sets than have previously been used show models have high accuracy on seen sources, but poor accuracy on unseen sources. The reason for the disparity is that the convolutional neural network model, which learns features, can focus on differences in X-ray machines or in positioning within the machines, for example. Any feature that a person would clearly rule out is called a confounding feature. Some of the models were trained on COVID-19 image data taken from publications, which may be different than raw images. Some data sets were of pediatric cases with pneumonia where COVID-19 chest X-rays are almost exclusively from adults, so lung size becomes a spurious feature that can be exploited. In this work, we have eliminated many confounding features by working with as close to raw data as possible. Still, deep learned models may leverage source specific confounders to differentiate COVID-19 from pneumonia preventing generalizing to new data sources (i.e. external sites). Our models have achieved an AUC of 1.00 on seen data sources but in the worst case only scored an AUC of 0.38 on unseen ones. This indicates that such models need further assessment/development before they can be broadly clinically deployed. An example of fine-tuning to improve performance at a new site is given.
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Affiliation(s)
- Kaoutar Ben Ahmed
- Department of Computer Science and EngineeringUniversity of South FloridaTampaFL33620USA
| | - Gregory M. Goldgof
- Department of Laboratory MedicineThe University of CaliforniaSan FranciscoCA94143USA
| | - Rahul Paul
- Department of Radiation OncologyMassachusetts General HospitalBostonMA02115USA
- Department of Radiation OncologyHarvard Medical SchoolBostonMA02115USA
| | - Dmitry B. Goldgof
- Department of Computer Science and EngineeringUniversity of South FloridaTampaFL33620USA
| | - Lawrence O. Hall
- Department of Computer Science and EngineeringUniversity of South FloridaTampaFL33620USA
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15
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Shafi G, Desai S, Srinivasan K, Ramesh A, Chaturvedi R, Uttarwar M. Host-dependent molecular factors mediating SARS-CoV-2 infection to gain clinical insights for developing effective targeted therapy. Mol Genet Genomics 2021; 296:501-511. [PMID: 33743061 PMCID: PMC7980125 DOI: 10.1007/s00438-021-01774-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Accepted: 03/09/2021] [Indexed: 11/08/2022]
Abstract
Coronavirus disease 2019 (COVID-19), a recent viral pandemic that first began in December 2019, in Hunan wildlife market, Wuhan, China. The infection is caused by a coronavirus, SARS-CoV-2 and clinically characterized by common symptoms including fever, dry cough, loss of taste/smell, myalgia and pneumonia in severe cases. With overwhelming spikes in infection and death, its pathogenesis yet remains elusive. Since the infection spread rapidly, its healthcare demands are overwhelming with uncontrollable emergencies. Although laboratory testing and analysis are developing at an enormous pace, the high momentum of severe cases demand more rapid strategies for initial screening and patient stratification. Several molecular biomarkers like C-reactive protein, interleukin-6 (IL6), eosinophils and cytokines, and artificial intelligence (AI) based screening approaches have been developed by various studies to assist this vast medical demand. This review is an attempt to collate the outcomes of such studies, thus highlighting the utility of AI in rapid screening of molecular markers along with chest X-rays and other COVID-19 symptoms to enable faster diagnosis and patient stratification. By doing so, we also found that molecular markers such as C-reactive protein, IL-6 eosinophils, etc. showed significant differences between severe and non-severe cases of COVID-19 patients. CT findings in the lungs also showed different patterns like lung consolidation significantly higher in patients with poor recovery and lung lesions and fibrosis being higher in patients with good recovery. Thus, from these evidences we perceive that an initial rapid screening using integrated AI approach could be a way forward in efficient patient stratification.
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Affiliation(s)
| | | | | | - Aarthi Ramesh
- School of Science, Monash University Malaysia, Jalan Lagoon Selatan, Bandar Sunway, 47500, Subang Jaya, Selangor, Malaysia
| | - Rupesh Chaturvedi
- School of Biotechnology, Jawaharlal Nehru University, New Delhi, 110067, India
- Nanofluidiks Pvt. Ltd. Jawaharlal Nehru University-Foundation for Innovation New Delhi, New Delhi, 110067, India
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16
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Signoroni A, Savardi M, Benini S, Adami N, Leonardi R, Gibellini P, Vaccher F, Ravanelli M, Borghesi A, Maroldi R, Farina D. BS-Net: Learning COVID-19 pneumonia severity on a large chest X-ray dataset. Med Image Anal 2021; 71:102046. [PMID: 33862337 PMCID: PMC8010334 DOI: 10.1016/j.media.2021.102046] [Citation(s) in RCA: 53] [Impact Index Per Article: 17.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2020] [Revised: 02/04/2021] [Accepted: 03/17/2021] [Indexed: 12/22/2022]
Abstract
In this work we design an end-to-end deep learning architecture for predicting, on Chest X-rays images (CXR), a multi-regional score conveying the degree of lung compromise in COVID-19 patients. Such semi-quantitative scoring system, namely Brixia score, is applied in serial monitoring of such patients, showing significant prognostic value, in one of the hospitals that experienced one of the highest pandemic peaks in Italy. To solve such a challenging visual task, we adopt a weakly supervised learning strategy structured to handle different tasks (segmentation, spatial alignment, and score estimation) trained with a “from-the-part-to-the-whole” procedure involving different datasets. In particular, we exploit a clinical dataset of almost 5,000 CXR annotated images collected in the same hospital. Our BS-Net demonstrates self-attentive behavior and a high degree of accuracy in all processing stages. Through inter-rater agreement tests and a gold standard comparison, we show that our solution outperforms single human annotators in rating accuracy and consistency, thus supporting the possibility of using this tool in contexts of computer-assisted monitoring. Highly resolved (super-pixel level) explainability maps are also generated, with an original technique, to visually help the understanding of the network activity on the lung areas. We also consider other scores proposed in literature and provide a comparison with a recently proposed non-specific approach. We eventually test the performance robustness of our model on an assorted public COVID-19 dataset, for which we also provide Brixia score annotations, observing good direct generalization and fine-tuning capabilities that highlight the portability of BS-Net in other clinical settings. The CXR dataset along with the source code and the trained model are publicly released for research purposes.
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Affiliation(s)
- Alberto Signoroni
- Department of Information Engineering, University of Brescia, Brescia, Italy.
| | - Mattia Savardi
- Department of Information Engineering, University of Brescia, Brescia, Italy
| | - Sergio Benini
- Department of Information Engineering, University of Brescia, Brescia, Italy
| | - Nicola Adami
- Department of Information Engineering, University of Brescia, Brescia, Italy
| | - Riccardo Leonardi
- Department of Information Engineering, University of Brescia, Brescia, Italy
| | - Paolo Gibellini
- Department of Medical and Surgical Specialties, Radiological Sciences, and Public Health, University of Brescia, Brescia, Italy
| | - Filippo Vaccher
- Department of Medical and Surgical Specialties, Radiological Sciences, and Public Health, University of Brescia, Brescia, Italy
| | - Marco Ravanelli
- Department of Medical and Surgical Specialties, Radiological Sciences, and Public Health, University of Brescia, Brescia, Italy
| | - Andrea Borghesi
- Department of Medical and Surgical Specialties, Radiological Sciences, and Public Health, University of Brescia, Brescia, Italy
| | - Roberto Maroldi
- Department of Medical and Surgical Specialties, Radiological Sciences, and Public Health, University of Brescia, Brescia, Italy
| | - Davide Farina
- Department of Medical and Surgical Specialties, Radiological Sciences, and Public Health, University of Brescia, Brescia, Italy
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17
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Artificial intelligence applications in medical imaging: A review of the medical physics research in Italy. Phys Med 2021; 83:221-241. [DOI: 10.1016/j.ejmp.2021.04.010] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/05/2020] [Revised: 03/31/2021] [Accepted: 04/03/2021] [Indexed: 02/06/2023] Open
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18
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Current limitations to identify COVID-19 using artificial intelligence with chest X-ray imaging. HEALTH AND TECHNOLOGY 2021; 11:411-424. [PMID: 33585153 PMCID: PMC7864619 DOI: 10.1007/s12553-021-00520-2] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Accepted: 01/11/2021] [Indexed: 12/17/2022]
Abstract
The scientific community has joined forces to mitigate the scope of the current COVID-19 pandemic. The early identification of the disease, as well as the evaluation of its evolution is a primary task for the timely application of medical protocols. The use of medical images of the chest provides valuable information to specialists. Specifically, chest X-ray images have been the focus of many investigations that apply artificial intelligence techniques for the automatic classification of this disease. The results achieved to date on the subject are promising. However, some results of these investigations contain errors that must be corrected to obtain appropriate models for clinical use. This research discusses some of the problems found in the current scientific literature on the application of artificial intelligence techniques in the automatic classification of COVID-19. It is evident that in most of the reviewed works an incorrect evaluation protocol is applied, which leads to overestimating the results.
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19
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KC K, Yin Z, Wu M, Wu Z. Evaluation of deep learning-based approaches for COVID-19 classification based on chest X-ray images. SIGNAL, IMAGE AND VIDEO PROCESSING 2021; 15:959-966. [PMID: 33432267 PMCID: PMC7788389 DOI: 10.1007/s11760-020-01820-2] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/04/2020] [Revised: 09/01/2020] [Accepted: 11/12/2020] [Indexed: 05/02/2023]
Abstract
The COVID-19, novel coronavirus or SARS-Cov-2, has claimed hundreds of thousands of lives and affected millions of people all around the world with the number of deaths and infections growing exponentially. Deep convolutional neural network (DCNN) has been a huge milestone for image classification task including medical images. Transfer learning of state-of-the-art models have proven to be an efficient method of overcoming deficient data problem. In this paper, a thorough evaluation of eight pre-trained models is presented. Training, validating, and testing of these models were performed on chest X-ray (CXR) images belonging to five distinct classes, containing a total of 760 images. Fine-tuned models, pre-trained in ImageNet dataset, were computationally efficient and accurate. Fine-tuned DenseNet121 achieved a test accuracy of 98.69% and macro f1-score of 0.99 for four classes classification containing healthy, bacterial pneumonia, COVID-19, and viral pneumonia, and fine-tuned models achieved higher test accuracy for three-class classification containing healthy, COVID-19, and SARS images. The experimental results show that only 62% of total parameters were retrained to achieve such accuracy.
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Affiliation(s)
- Kamal KC
- School of Electronics and Information Engineering, Harbin Institute of Technology, Harbin, 150001 China
| | - Zhendong Yin
- School of Electronics and Information Engineering, Harbin Institute of Technology, Harbin, 150001 China
| | - Mingyang Wu
- School of Electronics and Information Engineering, Harbin Institute of Technology, Harbin, 150001 China
| | - Zhilu Wu
- School of Electronics and Information Engineering, Harbin Institute of Technology, Harbin, 150001 China
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20
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Tayarani N MH. Applications of artificial intelligence in battling against covid-19: A literature review. CHAOS, SOLITONS, AND FRACTALS 2021; 142:110338. [PMID: 33041533 PMCID: PMC7532790 DOI: 10.1016/j.chaos.2020.110338] [Citation(s) in RCA: 59] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2020] [Accepted: 10/01/2020] [Indexed: 05/14/2023]
Abstract
Colloquially known as coronavirus, the Severe Acute Respiratory Syndrome CoronaVirus 2 (SARS-CoV-2), that causes CoronaVirus Disease 2019 (COVID-19), has become a matter of grave concern for every country around the world. The rapid growth of the pandemic has wreaked havoc and prompted the need for immediate reactions to curb the effects. To manage the problems, many research in a variety of area of science have started studying the issue. Artificial Intelligence is among the area of science that has found great applications in tackling the problem in many aspects. Here, we perform an overview on the applications of AI in a variety of fields including diagnosis of the disease via different types of tests and symptoms, monitoring patients, identifying severity of a patient, processing covid-19 related imaging tests, epidemiology, pharmaceutical studies, etc. The aim of this paper is to perform a comprehensive survey on the applications of AI in battling against the difficulties the outbreak has caused. Thus we cover every way that AI approaches have been employed and to cover all the research until the writing of this paper. We try organize the works in a way that overall picture is comprehensible. Such a picture, although full of details, is very helpful in understand where AI sits in current pandemonium. We also tried to conclude the paper with ideas on how the problems can be tackled in a better way and provide some suggestions for future works.
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Affiliation(s)
- Mohammad-H Tayarani N
- Biocomputation Group, School of Computer Science, University of Hertfordshire, Hatfield, AL10 9AB, United Kingdom
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21
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Low HM, Low E, Lee CH. TTSH and NCID Radiology Services in COVID-19. ANNALS OF THE ACADEMY OF MEDICINE, SINGAPORE 2021. [PMID: 33381787 DOI: 10.47102/annals-acadmedsg.2020219] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Affiliation(s)
- Hsien Min Low
- Department of Diagnostic Imaging, Tan Tock Seng Hospital, Singapore
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22
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Golinelli D, Boetto E, Carullo G, Nuzzolese AG, Landini MP, Fantini MP. Adoption of Digital Technologies in Health Care During the COVID-19 Pandemic: Systematic Review of Early Scientific Literature. J Med Internet Res 2020; 22:e22280. [PMID: 33079693 PMCID: PMC7652596 DOI: 10.2196/22280] [Citation(s) in RCA: 195] [Impact Index Per Article: 48.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Revised: 07/25/2020] [Accepted: 09/15/2020] [Indexed: 12/18/2022] Open
Abstract
BACKGROUND The COVID-19 pandemic is favoring digital transitions in many industries and in society as a whole. Health care organizations have responded to the first phase of the pandemic by rapidly adopting digital solutions and advanced technology tools. OBJECTIVE The aim of this review is to describe the digital solutions that have been reported in the early scientific literature to mitigate the impact of COVID-19 on individuals and health systems. METHODS We conducted a systematic review of early COVID-19-related literature (from January 1 to April 30, 2020) by searching MEDLINE and medRxiv with appropriate terms to find relevant literature on the use of digital technologies in response to the pandemic. We extracted study characteristics such as the paper title, journal, and publication date, and we categorized the retrieved papers by the type of technology and patient needs addressed. We built a scoring rubric by cross-classifying the patient needs with the type of technology. We also extracted information and classified each technology reported by the selected articles according to health care system target, grade of innovation, and scalability to other geographical areas. RESULTS The search identified 269 articles, of which 124 full-text articles were assessed and included in the review after screening. Most of the selected articles addressed the use of digital technologies for diagnosis, surveillance, and prevention. We report that most of these digital solutions and innovative technologies have been proposed for the diagnosis of COVID-19. In particular, within the reviewed articles, we identified numerous suggestions on the use of artificial intelligence (AI)-powered tools for the diagnosis and screening of COVID-19. Digital technologies are also useful for prevention and surveillance measures, such as contact-tracing apps and monitoring of internet searches and social media usage. Fewer scientific contributions address the use of digital technologies for lifestyle empowerment or patient engagement. CONCLUSIONS In the field of diagnosis, digital solutions that integrate with traditional methods, such as AI-based diagnostic algorithms based both on imaging and clinical data, appear to be promising. For surveillance, digital apps have already proven their effectiveness; however, problems related to privacy and usability remain. For other patient needs, several solutions have been proposed, such as telemedicine or telehealth tools. These tools have long been available, but this historical moment may actually be favoring their definitive large-scale adoption. It is worth taking advantage of the impetus provided by the crisis; it is also important to keep track of the digital solutions currently being proposed to implement best practices and models of care in future and to adopt at least some of the solutions proposed in the scientific literature, especially in national health systems, which have proved to be particularly resistant to the digital transition in recent years.
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Affiliation(s)
- Davide Golinelli
- Department of Biomedical and Neuromotor Sciences, University of Bologna, Bologna, Italy
| | - Erik Boetto
- Department of Biomedical and Neuromotor Sciences, University of Bologna, Bologna, Italy
| | - Gherardo Carullo
- Department of Italian and Supranational Public Law, University of Milan, Milan, Italy
| | | | | | - Maria Pia Fantini
- Department of Biomedical and Neuromotor Sciences, University of Bologna, Bologna, Italy
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Schwab P, DuMont Schütte A, Dietz B, Bauer S. Clinical Predictive Models for COVID-19: Systematic Study. J Med Internet Res 2020; 22:e21439. [PMID: 32976111 PMCID: PMC7541040 DOI: 10.2196/21439] [Citation(s) in RCA: 45] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2020] [Revised: 08/30/2020] [Accepted: 09/14/2020] [Indexed: 02/06/2023] Open
Abstract
BACKGROUND COVID-19 is a rapidly emerging respiratory disease caused by SARS-CoV-2. Due to the rapid human-to-human transmission of SARS-CoV-2, many health care systems are at risk of exceeding their health care capacities, in particular in terms of SARS-CoV-2 tests, hospital and intensive care unit (ICU) beds, and mechanical ventilators. Predictive algorithms could potentially ease the strain on health care systems by identifying those who are most likely to receive a positive SARS-CoV-2 test, be hospitalized, or admitted to the ICU. OBJECTIVE The aim of this study is to develop, study, and evaluate clinical predictive models that estimate, using machine learning and based on routinely collected clinical data, which patients are likely to receive a positive SARS-CoV-2 test or require hospitalization or intensive care. METHODS Using a systematic approach to model development and optimization, we trained and compared various types of machine learning models, including logistic regression, neural networks, support vector machines, random forests, and gradient boosting. To evaluate the developed models, we performed a retrospective evaluation on demographic, clinical, and blood analysis data from a cohort of 5644 patients. In addition, we determined which clinical features were predictive to what degree for each of the aforementioned clinical tasks using causal explanations. RESULTS Our experimental results indicate that our predictive models identified patients that test positive for SARS-CoV-2 a priori at a sensitivity of 75% (95% CI 67%-81%) and a specificity of 49% (95% CI 46%-51%), patients who are SARS-CoV-2 positive that require hospitalization with 0.92 area under the receiver operator characteristic curve (AUC; 95% CI 0.81-0.98), and patients who are SARS-CoV-2 positive that require critical care with 0.98 AUC (95% CI 0.95-1.00). CONCLUSIONS Our results indicate that predictive models trained on routinely collected clinical data could be used to predict clinical pathways for COVID-19 and, therefore, help inform care and prioritize resources.
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Affiliation(s)
| | | | - Benedikt Dietz
- Eidgenössische Technische Hochschule Zürich, Zürich, Switzerland
| | - Stefan Bauer
- Max Planck Institute for Intelligent Systems, Tübingen, Germany
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