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For: Lage JM, Leamon JH, Pejovic T, Hamann S, Lacey M, Dillon D, Segraves R, Vossbrinck B, González A, Pinkel D, Albertson DG, Costa J, Lizardi PM. Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH. Genome Res 2003;13:294-307. [PMID: 12566408 PMCID: PMC420367 DOI: 10.1101/gr.377203] [Citation(s) in RCA: 212] [Impact Index Per Article: 10.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Number Cited by Other Article(s)
1
Wang Z, He S, Zhang C, Xu D. A label-free aptasensing method for detecting SARS-CoV-2 virus antigen by using dumbbell probe-mediated circle-to-circle amplification. Anal Bioanal Chem 2024;416:1961-1970. [PMID: 38349532 DOI: 10.1007/s00216-024-05195-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 01/28/2024] [Accepted: 02/02/2024] [Indexed: 03/01/2024]
2
Ordóñez CD, Mayoral-Campos C, Egas C, Redrejo-Rodríguez M. A primer-independent DNA polymerase-based method for competent whole-genome amplification of intermediate to high GC sequences. NAR Genom Bioinform 2023;5:lqad073. [PMID: 37608803 PMCID: PMC10440786 DOI: 10.1093/nargab/lqad073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2023] [Revised: 07/03/2023] [Accepted: 08/09/2023] [Indexed: 08/24/2023]  Open
3
Ordóñez CD, Redrejo-Rodríguez M. DNA Polymerases for Whole Genome Amplification: Considerations and Future Directions. Int J Mol Sci 2023;24:ijms24119331. [PMID: 37298280 DOI: 10.3390/ijms24119331] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2023] [Revised: 05/24/2023] [Accepted: 05/25/2023] [Indexed: 06/12/2023]  Open
4
Czado N, LaRue B, Wheeler A, Houston R, Holmes A, Grisedale K, Hughes S. The effectiveness of various strategies to improve DNA analysis of formaldehyde-damaged tissues from embalmed cadavers for human identification purposes. J Forensic Sci 2023;68:596-607. [PMID: 36725687 DOI: 10.1111/1556-4029.15200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Revised: 12/06/2022] [Accepted: 01/03/2023] [Indexed: 02/03/2023]
5
Circular Whole-Transcriptome Amplification (cWTA) and mNGS Screening Enhanced by a Group Testing Algorithm (mEGA) Enable High-Throughput and Comprehensive Virus Identification. mSphere 2022;7:e0033222. [PMID: 36005385 PMCID: PMC9599668 DOI: 10.1128/msphere.00332-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]  Open
6
Wang K, Jiang Y, Guo Y, Geng M, Wu W. An Optimized Thermal Feedback Methodology for Accurate Temperature Control and High Amplification Efficiency during Fluorescent qPCR. Bioengineering (Basel) 2022;9:bioengineering9060237. [PMID: 35735480 PMCID: PMC9220086 DOI: 10.3390/bioengineering9060237] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2022] [Revised: 05/22/2022] [Accepted: 05/24/2022] [Indexed: 12/27/2022]  Open
7
Fifty Generations of Amitosis: Tracing Asymmetric Allele Segregation in Polyploid Cells with Single-Cell DNA Sequencing. Microorganisms 2021;9:microorganisms9091979. [PMID: 34576874 PMCID: PMC8467633 DOI: 10.3390/microorganisms9091979] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2021] [Revised: 09/08/2021] [Accepted: 09/09/2021] [Indexed: 01/04/2023]  Open
8
Novel rolling circle amplification biosensors for food-borne microorganism detection. Trends Analyt Chem 2021. [DOI: 10.1016/j.trac.2021.116293] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
9
Glökler J, Lim TS, Ida J, Frohme M. Isothermal amplifications - a comprehensive review on current methods. Crit Rev Biochem Mol Biol 2021;56:543-586. [PMID: 34263688 DOI: 10.1080/10409238.2021.1937927] [Citation(s) in RCA: 59] [Impact Index Per Article: 19.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
10
Cheng YH, Liu SJ, Jiang JH. Enzyme-free electrochemical biosensor based on amplification of proximity-dependent surface hybridization chain reaction for ultrasensitive mRNA detection. Talanta 2020;222:121536. [PMID: 33167244 DOI: 10.1016/j.talanta.2020.121536] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2020] [Revised: 08/04/2020] [Accepted: 08/08/2020] [Indexed: 01/03/2023]
11
Field diagnosis and genotyping of chikungunya virus using a dried reverse transcription loop-mediated isothermal amplification (LAMP) assay and MinION sequencing. PLoS Negl Trop Dis 2019;13:e0007480. [PMID: 31158221 PMCID: PMC6564047 DOI: 10.1371/journal.pntd.0007480] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Revised: 06/13/2019] [Accepted: 05/20/2019] [Indexed: 12/17/2022]  Open
12
Höpke J, Brewer G, Dodsworth S, Ortiz E, Albach D. DNA extraction from old herbarium material of Veronica subgen. Pseudolysimachium (Plantaginaceae). UKRAINIAN BOTANICAL JOURNAL 2019. [DOI: 10.15407/ukrbotj75.06.564] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
13
Fan Y, Dong D, Li Q, Si H, Pei H, Li L, Tang B. Fluorescent analysis of bioactive molecules in single cells based on microfluidic chips. LAB ON A CHIP 2018;18:1151-1173. [PMID: 29541737 DOI: 10.1039/c7lc01333g] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
14
Özay B, Robertus CM, Negri JL, McCalla SE. First characterization of a biphasic, switch-like DNA amplification. Analyst 2018;143:1820-1828. [PMID: 29577124 PMCID: PMC5969907 DOI: 10.1039/c8an00130h] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
15
Boone M, De Koker A, Callewaert N. Capturing the 'ome': the expanding molecular toolbox for RNA and DNA library construction. Nucleic Acids Res 2018;46:2701-2721. [PMID: 29514322 PMCID: PMC5888575 DOI: 10.1093/nar/gky167] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2017] [Revised: 02/05/2018] [Accepted: 02/23/2018] [Indexed: 12/14/2022]  Open
16
Systematic assessment of the performance of whole-genome amplification for SNP/CNV detection and β-thalassemia genotyping. J Hum Genet 2018;63:407-416. [PMID: 29440707 DOI: 10.1038/s10038-018-0411-5] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Revised: 01/04/2018] [Accepted: 01/04/2018] [Indexed: 11/08/2022]
17
Al-Hashimi F, J. Diaz-Cano S. Multi-target analysis of neoplasms for the evaluation of tumor progression: stochastic approach of biologic processes. AIMS MOLECULAR SCIENCE 2018. [DOI: 10.3934/molsci.2018.1.14] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
18
Qu X, Wang S, Ge Z, Wang J, Yao G, Li J, Zuo X, Shi J, Song S, Wang L, Li L, Pei H, Fan C. Programming Cell Adhesion for On-Chip Sequential Boolean Logic Functions. J Am Chem Soc 2017;139:10176-10179. [DOI: 10.1021/jacs.7b04040] [Citation(s) in RCA: 91] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
19
Nie X, Zhang C, Wang Y, Guo C, Zhou J, Chen G. Application of hyper-branched rolling circle amplification (HRCA) and HRCA-based strip test for the detection of Chattonella marina. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2017;24:15678-15688. [PMID: 28527138 DOI: 10.1007/s11356-017-9152-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2016] [Accepted: 05/01/2017] [Indexed: 06/07/2023]
20
Mikulasova A, Wardell CP, Murison A, Boyle EM, Jackson GH, Smetana J, Kufova Z, Pour L, Sandecka V, Almasi M, Vsianska P, Gregora E, Kuglik P, Hajek R, Davies FE, Morgan GJ, Walker BA. The spectrum of somatic mutations in monoclonal gammopathy of undetermined significance indicates a less complex genomic landscape than that in multiple myeloma. Haematologica 2017;102:1617-1625. [PMID: 28550183 PMCID: PMC5685224 DOI: 10.3324/haematol.2017.163766] [Citation(s) in RCA: 57] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/10/2017] [Accepted: 05/16/2017] [Indexed: 01/10/2023]  Open
21
Comparison of whole genome amplification techniques for human single cell exome sequencing. PLoS One 2017;12:e0171566. [PMID: 28207771 PMCID: PMC5313163 DOI: 10.1371/journal.pone.0171566] [Citation(s) in RCA: 52] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2016] [Accepted: 01/21/2017] [Indexed: 11/19/2022]  Open
22
Comparative study of whole genome amplification and next generation sequencing performance of single cancer cells. Oncotarget 2016;8:56066-56080. [PMID: 28915574 PMCID: PMC5593545 DOI: 10.18632/oncotarget.10701] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2016] [Accepted: 06/09/2016] [Indexed: 12/30/2022]  Open
23
Development of a bench-top extra-cleanroom for DNA amplification. Biotechniques 2016;61:42-6. [DOI: 10.2144/000114433] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2014] [Accepted: 03/21/2016] [Indexed: 11/23/2022]  Open
24
Digital Droplet Multiple Displacement Amplification (ddMDA) for Whole Genome Sequencing of Limited DNA Samples. PLoS One 2016;11:e0153699. [PMID: 27144304 PMCID: PMC4856258 DOI: 10.1371/journal.pone.0153699] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2015] [Accepted: 04/03/2016] [Indexed: 12/17/2022]  Open
25
Contemporary molecular tools in microbial ecology and their application to advancing biotechnology. Biotechnol Adv 2015;33:1755-73. [DOI: 10.1016/j.biotechadv.2015.09.005] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2015] [Revised: 09/19/2015] [Accepted: 09/20/2015] [Indexed: 12/30/2022]
26
Morinishi LS, Blainey P. Simple Bulk Readout of Digital Nucleic Acid Quantification Assays. J Vis Exp 2015. [PMID: 26436576 DOI: 10.3791/52925] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
27
Zhang CZ, Spektor A, Cornils H, Francis JM, Jackson EK, Liu S, Meyerson M, Pellman D. Chromothripsis from DNA damage in micronuclei. Nature 2015;522:179-84. [PMID: 26017310 PMCID: PMC4742237 DOI: 10.1038/nature14493] [Citation(s) in RCA: 768] [Impact Index Per Article: 85.3] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2014] [Accepted: 04/20/2015] [Indexed: 01/01/2023]
28
Calibrating genomic and allelic coverage bias in single-cell sequencing. Nat Commun 2015;6:6822. [PMID: 25879913 DOI: 10.1038/ncomms7822] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2014] [Accepted: 03/03/2015] [Indexed: 02/07/2023]  Open
29
Sørensen KM. Whole Genome Amplification from Blood Spot Samples. Methods Mol Biol 2015;1347:163-178. [PMID: 26374317 DOI: 10.1007/978-1-4939-2990-0_12] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
30
The Single-Cell Lab or How to Perform Single-Cell Molecular Analysis. Methods Mol Biol 2015;1347:43-55. [PMID: 26374308 DOI: 10.1007/978-1-4939-2990-0_3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
31
Sabina J, Leamon JH. Bias in Whole Genome Amplification: Causes and Considerations. Methods Mol Biol 2015;1347:15-41. [PMID: 26374307 DOI: 10.1007/978-1-4939-2990-0_2] [Citation(s) in RCA: 60] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
32
Kroneis T, El-Heliebi A. Whole Genome Amplification by Isothermal Multiple Strand Displacement Using Phi29 DNA Polymerase. Methods Mol Biol 2015;1347:111-117. [PMID: 26374313 DOI: 10.1007/978-1-4939-2990-0_8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
33
Czyz ZT, Kirsch S, Polzer B. Principles of Whole-Genome Amplification. Methods Mol Biol 2015;1347:1-14. [PMID: 26374306 DOI: 10.1007/978-1-4939-2990-0_1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
34
Walter MC, Öhrman C, Myrtennäs K, Sjödin A, Byström M, Larsson P, Macellaro A, Forsman M, Frangoulidis D. Genome sequence of Coxiella burnetii strain Namibia. Stand Genomic Sci 2014;9:22. [PMID: 25593636 PMCID: PMC4286197 DOI: 10.1186/1944-3277-9-22] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2014] [Accepted: 11/17/2014] [Indexed: 11/28/2022]  Open
35
Furtak VA, Dabrazhynetskaya A, Volokhov DV, Chizhikov V. Use of tangential flow filtration for improving detection of viral adventitious agents in cell substrates. Biologicals 2014;43:23-30. [PMID: 25432087 DOI: 10.1016/j.biologicals.2014.10.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2014] [Revised: 10/03/2014] [Accepted: 10/27/2014] [Indexed: 11/28/2022]  Open
36
A de novo genome assembly algorithm for repeats and nonrepeats. BIOMED RESEARCH INTERNATIONAL 2014;2014:736473. [PMID: 24967398 PMCID: PMC4055594 DOI: 10.1155/2014/736473] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/19/2013] [Revised: 04/01/2014] [Accepted: 04/08/2014] [Indexed: 11/18/2022]
37
Takahashi H, Yamazaki H, Akanuma S, Kanahara H, Saito T, Chimuro T, Kobayashi T, Ohtani T, Yamamoto K, Sugiyama S, Kobori T. Preparation of Phi29 DNA polymerase free of amplifiable DNA using ethidium monoazide, an ultraviolet-free light-emitting diode lamp and trehalose. PLoS One 2014;9:e82624. [PMID: 24505243 PMCID: PMC3915000 DOI: 10.1371/journal.pone.0082624] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2013] [Accepted: 10/25/2013] [Indexed: 11/25/2022]  Open
38
Marine R, McCarren C, Vorrasane V, Nasko D, Crowgey E, Polson SW, Wommack KE. Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome. MICROBIOME 2014;2:3. [PMID: 24475755 PMCID: PMC3937105 DOI: 10.1186/2049-2618-2-3] [Citation(s) in RCA: 77] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2013] [Accepted: 12/17/2013] [Indexed: 05/04/2023]
39
Direito SOL, Zaura E, Little M, Ehrenfreund P, Röling WFM. Systematic evaluation of bias in microbial community profiles induced by whole genome amplification. Environ Microbiol 2014;16:643-57. [PMID: 24372985 DOI: 10.1111/1462-2920.12365] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2013] [Revised: 12/10/2013] [Accepted: 12/17/2013] [Indexed: 11/28/2022]
40
Reliable single cell array CGH for clinical samples. PLoS One 2014;9:e85907. [PMID: 24465780 PMCID: PMC3897541 DOI: 10.1371/journal.pone.0085907] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2013] [Accepted: 12/07/2013] [Indexed: 12/19/2022]  Open
41
McCaughan F. Molecular copy-number counting: potential of single-molecule diagnostics. Expert Rev Mol Diagn 2014;9:309-12. [DOI: 10.1586/erm.09.14] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
42
Džunková M, Garcia-Garcerà M, Martínez-Priego L, D’Auria G, Calafell F, Moya A. Direct squencing from the minimal number of DNA molecules needed to fill a 454 picotiterplate. PLoS One 2014;9:e97379. [PMID: 24887077 PMCID: PMC4041646 DOI: 10.1371/journal.pone.0097379] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2014] [Accepted: 04/17/2014] [Indexed: 02/07/2023]  Open
43
Gadkar VJ, Filion M. A linear concatenation strategy to construct 5'-enriched amplified cDNA libraries using multiple displacement amplification. Mol Biotechnol 2013;54:541-50. [PMID: 22941734 DOI: 10.1007/s12033-012-9594-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
44
Gadkar VJ, Arseneault T, Filion M. Fidelity and representativeness of two isothermal multiple displacement amplification systems to preamplify limiting amounts of total RNA. Mol Biotechnol 2013;56:377-85. [PMID: 24198216 DOI: 10.1007/s12033-013-9718-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
45
Sujayanont P, Chininmanu K, Tassaneetrithep B, Tangthawornchaikul N, Malasit P, Suriyaphol P. Comparison of phi29-based whole genome amplification and whole transcriptome amplification in dengue virus. J Virol Methods 2013;195:141-7. [PMID: 24129073 DOI: 10.1016/j.jviromet.2013.10.005] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2013] [Revised: 09/30/2013] [Accepted: 10/04/2013] [Indexed: 12/11/2022]
46
A robust method to analyze copy number alterations of less than 100 kb in single cells using oligonucleotide array CGH. PLoS One 2013;8:e67031. [PMID: 23825608 PMCID: PMC3692546 DOI: 10.1371/journal.pone.0067031] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2013] [Accepted: 05/14/2013] [Indexed: 12/31/2022]  Open
47
Kaewmanee M, Phoksawat W, Romphruk A, Romphruk AV, Jumnainsong A, Leelayuwat C. Development of a multiplex polymerase chain reaction-sequence-specific primer method for NKG2D and NKG2F single-nucleotide polymorphism typing using isothermal multiple displacement amplification products. ACTA ACUST UNITED AC 2013;81:419-27. [PMID: 23530727 DOI: 10.1111/tan.12105] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2012] [Revised: 02/20/2013] [Accepted: 02/25/2013] [Indexed: 12/20/2022]
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A single cell level based method for copy number variation analysis by low coverage massively parallel sequencing. PLoS One 2013;8:e54236. [PMID: 23372689 PMCID: PMC3553135 DOI: 10.1371/journal.pone.0054236] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2012] [Accepted: 12/10/2012] [Indexed: 02/02/2023]  Open
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Rosenquist R, Ehrencrona H, Hasle H, Palle J, Kanduri M. Whole-genome-amplified DNA as a source for mutational analysis underestimates the frequency of mutations in pediatric acute myeloid leukemia. Leukemia 2012;27:510-2. [PMID: 22996295 DOI: 10.1038/leu.2012.250] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Whole genome amplification of degraded and nondegraded DNA for forensic purposes. Int J Legal Med 2012;127:309-19. [PMID: 22940764 PMCID: PMC3578730 DOI: 10.1007/s00414-012-0764-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2012] [Accepted: 08/14/2012] [Indexed: 11/06/2022]
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