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For: Gulcher J. Microsatellite markers for linkage and association studies. Cold Spring Harb Protoc 2012;2012:425-32. [PMID: 22474656 DOI: 10.1101/pdb.top068510] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
Number Cited by Other Article(s)
1
Birnbaum R. Rediscovering tandem repeat variation in schizophrenia: challenges and opportunities. Transl Psychiatry 2023;13:402. [PMID: 38123544 PMCID: PMC10733427 DOI: 10.1038/s41398-023-02689-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 11/23/2023] [Accepted: 11/27/2023] [Indexed: 12/23/2023]  Open
2
Wei X, Fu Z, Li J, Ye Y. Genetic Diversity and Structure Revealed by Genomic Microsatellite Markers of Mytilus unguiculatus in the Coast of China Sea. Animals (Basel) 2023;13:ani13101609. [PMID: 37238039 DOI: 10.3390/ani13101609] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Revised: 05/03/2023] [Accepted: 05/08/2023] [Indexed: 05/28/2023]  Open
3
Jeanjean SI, Renault V, Daunay A, Shen Y, Hardy LM, Deleuze JF, How-Kit A. LT-RPA: An Isothermal DNA Amplification Approach for Improved Microsatellite Genotyping and Microsatellite Instability Detection. Methods Mol Biol 2023;2621:91-109. [PMID: 37041442 DOI: 10.1007/978-1-0716-2950-5_7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/13/2023]
4
Barbé L, Finkbeiner S. Genetic and Epigenetic Interplay Define Disease Onset and Severity in Repeat Diseases. Front Aging Neurosci 2022;14:750629. [PMID: 35592702 PMCID: PMC9110800 DOI: 10.3389/fnagi.2022.750629] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Accepted: 03/01/2022] [Indexed: 11/13/2022]  Open
5
TARANG MITEK, KUMAR PUSHPENDRA, KUMAR AMIT, SAINI BL, KAUSHAL SHOBHANA, SACHAN SHWETA, CHAUHAN ANUJ, PRAKASH JAI, BHUSHAN BHARAT. Genetic characterization of F0 outbred and F1 inbred Swiss albino mice using microsatellite markers and their performance evaluation. THE INDIAN JOURNAL OF ANIMAL SCIENCES 2021. [DOI: 10.56093/ijans.v91i3.114144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
6
Liu N, Shan F, Ma M. Strategic enhancement of immune checkpoint inhibition in refractory Colorectal Cancer: Trends and future prospective. Int Immunopharmacol 2021;99:108017. [PMID: 34352568 DOI: 10.1016/j.intimp.2021.108017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2021] [Revised: 07/17/2021] [Accepted: 07/21/2021] [Indexed: 02/07/2023]
7
Travaglino A, Raffone A, Santoro A, Raimondo D, Angelico G, Valente M, Arciuolo D, Scaglione G, D'alessandris N, Casadio P, Inzani F, Mollo A, Seracchioli R, Zannoni GF. Clear cell endometrial carcinomas with mismatch repair deficiency have a favorable prognosis: A systematic review and meta-analysis. Gynecol Oncol 2021;162:804-808. [PMID: 34266691 DOI: 10.1016/j.ygyno.2021.07.007] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2021] [Revised: 07/03/2021] [Accepted: 07/05/2021] [Indexed: 02/02/2023]
8
KAUSHAL SHOBHANA, KUMAR PUSHPENDRA, KUMAR AMIT, SAINI BL, TARANG MITEK, CHAUHAN ANUJ, PRAKASH JAI, BHUSHAN BHARAT. Genetic evaluation of F2 inbred strain of Swiss albino mice by microsatellite markers. THE INDIAN JOURNAL OF ANIMAL SCIENCES 2021. [DOI: 10.56093/ijans.v90i9.109490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
9
Trede F, Kil N, Stranks J, Connell AJ, Fischer J, Ostner J, Schülke O, Zinner D, Roos C. A refined panel of 42 microsatellite loci to universally genotype catarrhine primates. Ecol Evol 2021;11:498-505. [PMID: 33437445 PMCID: PMC7790618 DOI: 10.1002/ece3.7069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Revised: 10/28/2020] [Accepted: 11/03/2020] [Indexed: 11/30/2022]  Open
10
Zhang S, Liu Q, Lyu C, Chen J, Xiao R, Chen J, Yang Y, Zhang H, Hou K, Wu W. Characterizing glycosyltransferases by a combination of sequencing platforms applied to the leaf tissues of Stevia rebaudiana. BMC Genomics 2020;21:794. [PMID: 33187479 PMCID: PMC7664074 DOI: 10.1186/s12864-020-07195-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Accepted: 10/27/2020] [Indexed: 01/21/2023]  Open
11
Huang Y, Huang X, Zhou X, Wang J, Zhang R, Ma F, Wang K, Zhang Z, Dai X, Cao X, Zhang C, Han K, Ren Q. Immune activation by a multigene family of lectins with variable tandem repeats in oriental river prawn (Macrobrachium nipponense). Open Biol 2020;10:200141. [PMID: 32931720 PMCID: PMC7536079 DOI: 10.1098/rsob.200141] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]  Open
12
Juma I, Geleta M, Nyomora A, Saripella GV, Hovmalm HP, Carlsson AS, Fatih M, Ortiz R. Genetic diversity of avocado from the southern highlands of Tanzania as revealed by microsatellite markers. Hereditas 2020;157:40. [PMID: 32928297 PMCID: PMC7489003 DOI: 10.1186/s41065-020-00150-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Accepted: 08/20/2020] [Indexed: 01/06/2023]  Open
13
Yuan H, Zhang X, Zhao L, Chang H, Yang C, Qiu Z, Huang Y. Characterization and analysis of full-length transcriptomes from two grasshoppers, Gomphocerus licenti and Mongolotettix japonicus. Sci Rep 2020;10:14228. [PMID: 32848169 PMCID: PMC7450073 DOI: 10.1038/s41598-020-71178-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2019] [Accepted: 08/06/2020] [Indexed: 11/09/2022]  Open
14
Alopecia areata susceptibility variant in MHC region impacts expressions of genes contributing to hair keratinization and is involved in hair loss. EBioMedicine 2020;57:102810. [PMID: 32580135 PMCID: PMC7317227 DOI: 10.1016/j.ebiom.2020.102810] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2020] [Revised: 05/07/2020] [Accepted: 05/09/2020] [Indexed: 01/08/2023]  Open
15
Daunay A, Duval A, Baudrin LG, Buhard O, Renault V, Deleuze JF, How-Kit A. Low temperature isothermal amplification of microsatellites drastically reduces stutter artifact formation and improves microsatellite instability detection in cancer. Nucleic Acids Res 2020;47:e141. [PMID: 31584085 PMCID: PMC6868440 DOI: 10.1093/nar/gkz811] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2019] [Revised: 09/03/2019] [Accepted: 09/11/2019] [Indexed: 12/28/2022]  Open
16
Liu Y, Xu J, Chen M, Wang C, Li S. A unified STR profiling system across multiple species with whole genome sequencing data. BMC Bioinformatics 2019;20:671. [PMID: 31861983 PMCID: PMC6923897 DOI: 10.1186/s12859-019-3246-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]  Open
17
Shi H, Yang M, Mo C, Xie W, Liu C, Wu B, Ma X. Complete chloroplast genomes of two Siraitia Merrill species: Comparative analysis, positive selection and novel molecular marker development. PLoS One 2019;14:e0226865. [PMID: 31860647 PMCID: PMC6924677 DOI: 10.1371/journal.pone.0226865] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Accepted: 12/05/2019] [Indexed: 11/18/2022]  Open
18
Venkataraman GR, Rivas MA. Rare and common variant discovery in complex disease: the IBD case study. Hum Mol Genet 2019;28:R162-R169. [PMID: 31363759 PMCID: PMC6872431 DOI: 10.1093/hmg/ddz189] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 07/24/2019] [Accepted: 07/25/2019] [Indexed: 12/15/2022]  Open
19
Han T, Li M, Li J, Lv H, Ren B, Chen J, Li W. Comparison of chloroplast genomes of Gynura species: sequence variation, genome rearrangement and divergence studies. BMC Genomics 2019;20:791. [PMID: 31664913 PMCID: PMC6821010 DOI: 10.1186/s12864-019-6196-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2019] [Accepted: 10/16/2019] [Indexed: 11/10/2022]  Open
20
Lowe JWE, Bruce A. Genetics without genes? The centrality of genetic markers in livestock genetics and genomics. HISTORY AND PHILOSOPHY OF THE LIFE SCIENCES 2019;41:50. [PMID: 31659490 DOI: 10.1007/s40656-019-0290-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2019] [Accepted: 10/18/2019] [Indexed: 05/23/2023]
21
Mathema VB, Dondorp AM, Imwong M. OSTRFPD: Multifunctional Tool for Genome-Wide Short Tandem Repeat Analysis for DNA, Transcripts, and Amino Acid Sequences with Integrated Primer Designer. Evol Bioinform Online 2019;15:1176934319843130. [PMID: 31040636 PMCID: PMC6482647 DOI: 10.1177/1176934319843130] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/26/2019] [Accepted: 03/15/2019] [Indexed: 01/18/2023]  Open
22
Ma JE, Jiang HY, Li LM, Zhang XJ, Li HM, Li GY, Mo DY, Chen JP. SMRT sequencing of the full-length transcriptome of the Sunda pangolin (Manis javanica). Gene 2019;692:208-216. [PMID: 30664913 DOI: 10.1016/j.gene.2019.01.008] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2018] [Revised: 12/26/2018] [Accepted: 01/11/2019] [Indexed: 10/27/2022]
23
jabbari M, Fakheri BA, Aghnoum R, Mahdi Nezhad N, Ataei R. GWAS analysis in spring barley (Hordeum vulgare L.) for morphological traits exposed to drought. PLoS One 2018;13:e0204952. [PMID: 30261061 PMCID: PMC6160164 DOI: 10.1371/journal.pone.0204952] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2018] [Accepted: 09/16/2018] [Indexed: 12/02/2022]  Open
24
Jia D, Wang Y, Liu Y, Hu J, Guo Y, Gao L, Ma R. SMRT sequencing of full-length transcriptome of flea beetle Agasicles hygrophila (Selman and Vogt). Sci Rep 2018;8:2197. [PMID: 29396453 PMCID: PMC5797098 DOI: 10.1038/s41598-018-20181-y] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2017] [Accepted: 01/03/2018] [Indexed: 12/02/2022]  Open
25
RXRB Is an MHC-Encoded Susceptibility Gene Associated with Anti-Topoisomerase I Antibody-Positive Systemic Sclerosis. J Invest Dermatol 2017;137:1878-1886. [PMID: 28506627 DOI: 10.1016/j.jid.2017.04.028] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2017] [Revised: 04/14/2017] [Accepted: 04/23/2017] [Indexed: 01/03/2023]
26
New Repeat Polymorphism in the AKT1 Gene Predicts Striatal Dopamine D2/D3 Receptor Availability and Stimulant-Induced Dopamine Release in the Healthy Human Brain. J Neurosci 2017;37:4982-4991. [PMID: 28416594 DOI: 10.1523/jneurosci.3155-16.2017] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2016] [Revised: 03/31/2017] [Accepted: 04/05/2017] [Indexed: 12/21/2022]  Open
27
Saka S, Hirawa N, Oka A, Yatsu K, Hirukawa T, Yamamoto R, Matsusaka T, Imai E, Narita I, Endoh M, Ichikawa I, Umemura S, Inoko H. Genome-wide association study of IgA nephropathy using 23 465 microsatellite markers in a Japanese population. J Hum Genet 2015. [PMID: 26202575 DOI: 10.1038/jhg.2015.88] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
28
Browning HM, Acevedo-Whitehouse K, Gulland FMD, Hall AJ, Finlayson J, Dagleish MP, Billington KJ, Colegrove K, Hammond JA. Evidence for a genetic basis of urogenital carcinoma in the wild California sea lion. Proc Biol Sci 2015;281:20140240. [PMID: 25339718 PMCID: PMC4213630 DOI: 10.1098/rspb.2014.0240] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]  Open
29
Kamat N, Khidhir MA, Hussain S, Alashari MM, Rannug U. Chemotherapy induced microsatellite instability and loss of heterozygosity in chromosomes 2, 5, 10, and 17 in solid tumor patients. Cancer Cell Int 2014;14:118. [PMID: 25493073 PMCID: PMC4260186 DOI: 10.1186/s12935-014-0118-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2014] [Accepted: 10/27/2014] [Indexed: 01/05/2023]  Open
30
Association of vWA and TPOX polymorphisms with venous thrombosis in Mexican mestizos. BIOMED RESEARCH INTERNATIONAL 2014;2014:697689. [PMID: 25250329 PMCID: PMC4164132 DOI: 10.1155/2014/697689] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 06/18/2014] [Revised: 08/15/2014] [Accepted: 08/18/2014] [Indexed: 01/17/2023]
31
Anderson CD, Rosand J. Genome-wide linkage approach yields novel early onset myocardial infarction locus in East Asians. ACTA ACUST UNITED AC 2014;6:531-2. [PMID: 24347618 DOI: 10.1161/circgenetics.113.000378] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
32
Lamina C, Haun M, Coassin S, Kloss-Brandstätter A, Gieger C, Peters A, Grallert H, Strauch K, Meitinger T, Kedenko L, Paulweber B, Kronenberg F. A systematic evaluation of short tandem repeats in lipid candidate genes: riding on the SNP-wave. PLoS One 2014;9:e102113. [PMID: 25050552 PMCID: PMC4106801 DOI: 10.1371/journal.pone.0102113] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2014] [Accepted: 06/14/2014] [Indexed: 01/09/2023]  Open
33
Pugacheva V, Frenkel F, Korotkov E. Investigation of phase shifts for different period lengths in the genomes of C. elegans, D. melanogaster and S. cerevisiae. Comput Biol Chem 2014;51:12-21. [PMID: 24840641 DOI: 10.1016/j.compbiolchem.2014.03.004] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2013] [Revised: 03/31/2014] [Accepted: 03/31/2014] [Indexed: 11/26/2022]
34
Duitama J, Zablotskaya A, Gemayel R, Jansen A, Belet S, Vermeesch JR, Verstrepen KJ, Froyen G. Large-scale analysis of tandem repeat variability in the human genome. Nucleic Acids Res 2014;42:5728-41. [PMID: 24682812 PMCID: PMC4027155 DOI: 10.1093/nar/gku212] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
35
Bolton KA, Ross JP, Grice DM, Bowden NA, Holliday EG, Avery-Kiejda KA, Scott RJ. STaRRRT: a table of short tandem repeats in regulatory regions of the human genome. BMC Genomics 2013;14:795. [PMID: 24228761 PMCID: PMC3840602 DOI: 10.1186/1471-2164-14-795] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2013] [Accepted: 11/05/2013] [Indexed: 11/22/2022]  Open
36
Testing single-sample estimators of effective population size in genetically structured populations. CONSERV GENET 2013. [DOI: 10.1007/s10592-013-0518-3] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
37
Gu HF, Ma J, Gu KT, Brismar K. Association of intercellular adhesion molecule 1 (ICAM1) with diabetes and diabetic nephropathy. Front Endocrinol (Lausanne) 2012;3:179. [PMID: 23346076 PMCID: PMC3551242 DOI: 10.3389/fendo.2012.00179] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/22/2012] [Accepted: 12/17/2012] [Indexed: 12/26/2022]  Open
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