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Kocábková B, Ďurana J, Rakovský J, Pysanenko A, Fedor J, Ončák M, Fárník M. Electron-triggered processes in halogenated carboxylates: dissociation pathways in CF 3COCl and its clusters. Phys Chem Chem Phys 2024; 26:5640-5648. [PMID: 38288589 DOI: 10.1039/d3cp05387c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2024]
Abstract
Trifluoroacetyl chloride, CF3COCl, is produced in the Earth's atmosphere by photooxidative degradation of hydrochlorofluorocarbons, and represents a potential source of highly reactive halogen radicals. Despite considerable insight into photochemistry of CF3COCl, its reactivity towards electrons has not been addressed so far. We investigate the electron ionization and attachment in isolated CF3COCl molecules and (CF3COCl)N, max. N ≥ 10, clusters using a molecular beam experiment in combination with quantum chemical calculations. The ionization of the molecule at 70 eV electron energy leads to strong fragmentation: weakening of the C-C bond yields the CF3+ and COCl+ ions, while the fission of the C-Cl bond produces the major CF3CO+ fragment ion. The cluster spectra are dominated by Mn·COCl+ and Mn·CF3CO+ ions (M = CF3COCl). The electron attachment at energies between 1.5 and 11 eV also leads to the dissociation of the molecule breaking either the C-Cl bond at low energies below 3 eV yielding mainly Cl- ions, or dissociating the C-C bond at higher energies above 4 eV leading mainly to CF3- ions. In the clusters, the intact Mn- ions are stabilized after electron attachment at low energies with contribution of Mn·Cl- fragment ions. At higher energies, the Mn·Cl- fragments dominate the spectra, and C-C bond dissociation occurs as well yielding Mn·CF3-. Interestingly, Mn·Cl2- ions appear in the spectra at higher energies. We briefly discuss possible atmospheric implications.
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Affiliation(s)
- Barbora Kocábková
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 18223 Prague 8, Czech Republic.
| | - Jozef Ďurana
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 18223 Prague 8, Czech Republic.
| | - Jozef Rakovský
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 18223 Prague 8, Czech Republic.
| | - Andrij Pysanenko
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 18223 Prague 8, Czech Republic.
| | - Juraj Fedor
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 18223 Prague 8, Czech Republic.
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Czech Academy of Sciences, Dolejškova 2155/3, 18223 Prague 8, Czech Republic.
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2
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Heo J, Kim D, Segalina A, Ki H, Ahn DS, Lee S, Kim J, Cha Y, Lee KW, Yang J, Nunes JPF, Wang X, Ihee H. Capturing the generation and structural transformations of molecular ions. Nature 2024; 625:710-714. [PMID: 38200317 PMCID: PMC10808067 DOI: 10.1038/s41586-023-06909-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Accepted: 11/28/2023] [Indexed: 01/12/2024]
Abstract
Molecular ions are ubiquitous and play pivotal roles1-3 in many reactions, particularly in the context of atmospheric and interstellar chemistry4-6. However, their structures and conformational transitions7,8, particularly in the gas phase, are less explored than those of neutral molecules owing to experimental difficulties. A case in point is the halonium ions9-11, whose highly reactive nature and ring strain make them short-lived intermediates that are readily attacked even by weak nucleophiles and thus challenging to isolate or capture before they undergo further reaction. Here we show that mega-electronvolt ultrafast electron diffraction (MeV-UED)12-14, used in conjunction with resonance-enhanced multiphoton ionization, can monitor the formation of 1,3-dibromopropane (DBP) cations and their subsequent structural dynamics forming a halonium ion. We find that the DBP+ cation remains for a substantial duration of 3.6 ps in aptly named 'dark states' that are structurally indistinguishable from the DBP electronic ground state. The structural data, supported by surface-hopping simulations15 and ab initio calculations16, reveal that the cation subsequently decays to iso-DBP+, an unusual intermediate with a four-membered ring containing a loosely bound17,18 bromine atom, and eventually loses the bromine atom and forms a bromonium ion with a three-membered-ring structure19. We anticipate that the approach used here can also be applied to examine the structural dynamics of other molecular ions and thereby deepen our understanding of ion chemistry.
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Affiliation(s)
- Jun Heo
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea
| | - Doyeong Kim
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea
| | - Alekos Segalina
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea
| | - Hosung Ki
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea
| | - Doo-Sik Ahn
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea
- Foundry Business, Samsung Electronics Inc., Hwasung, Gyeonggi, Republic of Korea
| | - Seonggon Lee
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea
| | - Jungmin Kim
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea
| | - Yongjun Cha
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea
| | - Kyung Won Lee
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea
| | - Jie Yang
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
- Center of Basic Molecular Science, Department of Chemistry, Tsinghua University, Beijing, China
| | - J Pedro F Nunes
- Department of Physics and Astronomy, University of Nebraska-Lincoln, Lincoln, NE, USA
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, United Kingdom
| | - Xijie Wang
- SLAC National Accelerator Laboratory, Menlo Park, CA, USA
| | - Hyotcherl Ihee
- Center for Advanced Reaction Dynamics, Institute for Basic Science (IBS), Daejeon, Republic of Korea.
- Department of Chemistry and KI for the BioCentury, Korea Advanced Institute of Science and Technology (KAIST), Daejeon, Republic of Korea.
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3
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Paul A, Ghosh S, Nandi D. Fragmentation dynamics and absolute dissociative electron attachment cross sections in the low energy electron collision with ethanol. Phys Chem Chem Phys 2023; 25:28263-28271. [PMID: 37830258 DOI: 10.1039/d3cp03601d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2023]
Abstract
Dissociative electron attachment (DEA) to ethanol has been probed to study fragmentation dynamics using Time-of-Flight (ToF) mass spectrometric technique. Several fragment ions, namely, H-, O-, OH-, C2H3O- and C2H5O- have been observed. Extra effort has been made to detect low mass ions (here, H-). Absolute DEA cross sections for the formation of O- and OH- have been measured for the first time using relative flow technique (RFT). The threshold energy of different dissociation channels has been calculated using density functional theory (DFT) method. By combining the experimental and theoretical data, we found evidence of hydrogen migration in the production of O and C2H3O- ions.
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Affiliation(s)
- Anirban Paul
- Indian Institute of Science Education & Research Kolkata, Mohanpur 741246, India.
| | - Soumya Ghosh
- Indian Institute of Science Education & Research Kolkata, Mohanpur 741246, India.
| | - Dhananjay Nandi
- Indian Institute of Science Education & Research Kolkata, Mohanpur 741246, India.
- Center for Atomic, Molecular and Optical Sciences &Technologies, Joint initiative of IIT Tirupati and IISER Tirupati, Yerpedu, 517619, Andhra Pradesh, India
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4
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Lu QB. Critical Review on Radiative Forcing and Climate Models for Global Climate Change since 1970. ATMOSPHERE 2023; 14:1232. [DOI: 10.3390/atmos14081232] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
This review identifies a critical problem in the fundamental physics of current climate models. The large greenhouse effect of rising CO2 assumed in climate models is assessed by six key observations from ground- and satellite-based measurements. This assessment is enhanced by statistical analyses and model calculations of global or regional mean surface temperature changes by conventional climate models and by a conceptual quantum physical model of global warming due to halogen-containing greenhouse gases (halo-GHGs). The postulated large radiative forcing of CO2 in conventional climate models does not agree with satellite observations. Satellite-observed warming pattern resembles closely the atmospheric distribution of chlorofluorocarbons (CFCs). This review helps understand recent remarkable observations of reversals from cooling to warming in the lower stratosphere over most continents and in the upper stratosphere at high latitudes, surface warming cessations in the Antarctic, North America, UK, and Northern-Hemisphere (NH) extratropics, and the stabilization in NH or North America snow cover, since the turn of the century. The complementary observation of surface temperature changes in 3 representative regions (Central England, the Antarctic, and the Arctic) sheds new light on the primary mechanism of global warming. These observations agree well with not CO2-based climate models but the CFC-warming quantum physical model. The latter offers parameter-free analytical calculations of surface temperature changes, exhibiting remarkable agreement with observations. These observations overwhelmingly support an emerging picture that halo-GHGs made the dominant contribution to global warming in the late 20th century and that a gradual reversal in warming has occurred since ~2005 due to the phasing out of halo-GHGs. Advances and insights from this review may help humans make rational policies to reverse the past warming and maintain a healthy economy and ecosystem.
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Affiliation(s)
- Qing-Bin Lu
- Department of Physics and Astronomy, Department of Biology and Department of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, ON N2L 3G1, Canada
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5
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Lu QB. Formulation of the cosmic ray-driven electron-induced reaction mechanism for quantitative understanding of global ozone depletion. Proc Natl Acad Sci U S A 2023; 120:e2303048120. [PMID: 37364123 PMCID: PMC10319005 DOI: 10.1073/pnas.2303048120] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 05/12/2023] [Indexed: 06/28/2023] Open
Abstract
This paper formulates the cosmic ray-driven electron-induced reaction as a universal mechanism to provide a quantitative understanding of global ozone depletion. Based on a proposed electrostatic bonding mechanism for charge-induced adsorption of molecules on surfaces and on the measured dissociative electron transfer (DET) cross sections of ozone-depleting substances (ODSs) adsorbed on ice, an analytical equation is derived to give atmospheric chlorine atom concentration: [Formula: see text] where Φe is the prehydrated electron (epre-) flux produced by cosmic ray ionization on atmospheric particle surfaces, [Formula: see text] is the surface coverage of an ODS, and ki is the ODS's effective DET coefficient that is the product of the DET cross section, the lifetimes of surface-trapped epre- and Cl-, and the particle surface area density. With concentrations of ODSs as the sole variable, our calculated results of time-series ozone depletion rates in global regions in the 1960s, 1980s, and 2000s show generally good agreement with observations, particularly with ground-based ozonesonde data and satellite-measured data over Antarctica and with satellite data in a narrow altitude band at 13 to 20 km of the tropics. Good agreements with satellite data in the Arctic and midlatitudes are also found. A previously unreported effect of denitrification on ozone loss is found and expressed quantitatively. But this equation overestimates tropospheric ozone loss at northern midlatitudes and the Arctic, likely due to increased ozone production by the halogen chemistry in polluted regions. The results render confidence in applying the equation to achieve a quantitative understanding of global ozone depletion.
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Affiliation(s)
- Qing-Bin Lu
- Department of Physics and Astronomy, University of Waterloo, Waterloo, ONN2L 3G1, Canada
- Department of Biology, University of Waterloo, Waterloo, ONN2L 3G1, Canada
- Department of Chemistry, University of Waterloo, Waterloo, ONN2L 3G1, Canada
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6
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Chauhan D, Limbachiya C. Electron interactions with analogous of DNA/RNA nucleobases: 3-hydroxytetrahydroFuran and α-Tetrahydrofurfuryl alcohol. Radiat Phys Chem Oxf Engl 1993 2023. [DOI: 10.1016/j.radphyschem.2023.110802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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7
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Lu QB. Response to “Comment on ‘Observation of large and all-season ozone losses over the tropics’” [AIP Adv. 12, 075006 (2022)]. AIP ADVANCES 2022; 12. [DOI: 10.1063/5.0129344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Affiliation(s)
- Qing-Bin Lu
- Department of Physics and Astronomy and Departments of Biology and Chemistry, University of Waterloo , 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
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8
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Lu QB. Major Contribution of Halogenated Greenhouse Gases to Global Surface Temperature Change. ATMOSPHERE 2022; 13:1419. [DOI: 10.3390/atmos13091419] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
This paper aims to better understand why there was a global warming pause in 2000–2015 and why the global mean surface temperature (GMST) has risen again in recent years. We present and statistically analyze substantial time-series observed datasets of global lower-stratospheric temperature (GLST), troposphere–stratosphere temperature climatology, global land surface air temperature, GMST, sea ice extent (SIE) and snow cover extent (SCE), combined with modeled calculations of GLSTs and GMSTs. The observed and analyzed results show that GLST/SCE has stabilized since the mid-1990s with no significant change over the past two and a half decades. Upper-stratospheric warming at high latitudes has been observed and GMST or global land surface air temperature has reached a plateau since the mid-2000s with the removal of natural effects. In marked contrast, continued drastic warmings at the coasts of polar regions (particularly Russia and Alaska) are observed and well explained by the sea-ice-loss warming amplification mechanism. The calculated GMSTs by the parameter-free quantum-physics warming model of halogenated greenhouse gases (GHGs) show excellent agreement with the observed GMSTs after the natural El Niño southern oscillation and volcanic effects are removed. These results have provided strong evidence for the dominant warming mechanism of anthropogenic halogenated GHGs. The results also call for closer scrutiny of the assumptions made in current climate models.
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9
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Lu QB. Observation of large and all-season ozone losses over the tropics. AIP ADVANCES 2022; 12. [DOI: 10.1063/5.0094629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
This paper reveals a large and all-season ozone hole in the lower stratosphere over the tropics (30°N–30°S) existing since the 1980s, where an O3 hole is defined as an area of O3 loss larger than 25% compared with the undisturbed atmosphere. The depth of this tropical O3 hole is comparable to that of the well-known springtime Antarctic O3 hole, whereas its area is about seven times that of the latter. Similar to the Antarctic O3 hole, approximately 80% of the normal O3 value is depleted at the center of the tropical O3 hole. The results strongly indicate that both Antarctic and tropical O3 holes must arise from an identical physical mechanism, for which the cosmic-ray-driven electron reaction model shows good agreement with observations. The whole-year large tropical O3 hole could cause a great global concern as it can lead to increases in ground-level ultraviolet radiation and affect 50% of the Earth’s surface area, which is home to approximately 50% of the world’s population. Moreover, the presence of the tropical and polar O3 holes is equivalent to the formation of three “temperature holes” observed in the stratosphere. These findings will have significances in understanding planetary physics, ozone depletion, climate change, and human health.
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Affiliation(s)
- Qing-Bin Lu
- Department of Physics and Astronomy and Departments of Biology and Chemistry, University of Waterloo , 200 University Ave. West, Waterloo, Ontario N2L 3G1, Canada
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10
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Lu QB. Fingerprints of the cosmic ray driven mechanism of the ozone hole. AIP ADVANCES 2021; 11. [DOI: 10.1063/5.0047661] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
Abstract
There is long research interest in electron-induced reactions of halogenated molecules. It has been two decades since the cosmic-ray (CR) driven electron-induced reaction (CRE) mechanism for the ozone hole formation was proposed. The derived CRE equation with the stratospheric equivalent chlorine level and CR intensity as the only two variables has well reproduced the observed data of stratospheric O3 and temperatures over the past 40 years. The CRE predictions of 11-year cyclic variations of the Antarctic O3 hole and associated stratospheric cooling have also been well confirmed. Measured altitude profiles of the ozone and temperatures in Antarctic ozone holes provide convincing fingerprints of the CRE mechanism. A quantitative estimate indicates that the CRE-produced Cl atoms could completely deplete or even overkill the ozone in the CR-peak polar stratospheric region, consistent with the observed altitude profiles of the severest Antarctic ozone holes. After removing the natural CR effect, the hidden recovery in the Antarctic O3 hole since ∼1995 is clearly discovered, while the recovery of O3 loss at mid-latitudes is being delayed by ≥10 years. These results have provided strong evidence of the CRE mechanism. If the CR intensity keeps the current rising trend, the Antarctic O3 hole will return to the 1980 level by ∼2060, while the returning of the O3 layer at mid-latitudes to the 1980 level will largely be delayed or will not even occur by the end of this century. The results strongly indicate that the CRE mechanism must be considered as a key factor in evaluating the O3 hole.
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Affiliation(s)
- Qing-Bin Lu
- Department of Physics and Astronomy and Departments of Biology and Chemistry, University of Waterloo , 200 University Avenue West, Waterloo, Ontario N2L 3G1, Canada
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11
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Fárník M, Fedor J, Kočišek J, Lengyel J, Pluhařová E, Poterya V, Pysanenko A. Pickup and reactions of molecules on clusters relevant for atmospheric and interstellar processes. Phys Chem Chem Phys 2021; 23:3195-3213. [PMID: 33524089 DOI: 10.1039/d0cp06127a] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
In this perspective, we review experiments with molecules picked up on large clusters in molecular beams with the focus on the processes in atmospheric and interstellar chemistry. First, we concentrate on the pickup itself, and we discuss the pickup cross sections. We measure the uptake of different atmospheric molecules on mixed nitric acid-water clusters and determine the accommodation coefficients relevant for aerosol formation in the Earth's atmosphere. Then the coagulation of the adsorbed molecules on the clusters is investigated. In the second part of this perspective, we review examples of different processes triggered by UV-photons or electrons in the clusters with embedded molecules. We start with the photodissociation of hydrogen halides and Freon CF2Cl2 on ice nanoparticles in connection with the polar stratospheric ozone depletion. Next, we mention reactions following the excitation and ionization of the molecules adsorbed on clusters. The first ionization-triggered reaction observed between two different molecules picked up on the cluster was the proton transfer between methanol and formic acid deposited on large argon clusters. Finally, negative ion reactions after slow electron attachment are illustrated by two examples: mixed nitric acid-water clusters, and hydrogen peroxide deposited on large ArN and (H2O)N clusters. The selected examples are discussed from the perspective of the atmospheric and interstellar chemistry, and several future directions are proposed.
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Affiliation(s)
- Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague, Czech Republic.
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12
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Trabattoni A, Colaizzi L, Ban L, Wanie V, Saraswathula K, Månsson EP, Rupp P, Liu Q, Seiffert L, Herzig EA, Cartella A, Yoder BL, Légaré F, Kling MF, Fennel T, Signorell R, Calegari F. Photoelectron spectroscopy of large water clusters ionized by an XUV comb. JPHYS PHOTONICS 2020. [DOI: 10.1088/2515-7647/ab92b1] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Abstract
Detailed knowledge about photo-induced electron dynamics in water is key to the understanding of several biological and chemical mechanisms, in particular for those resulting from ionizing radiation. Here we report a method to obtain photoelectron spectra from neutral water clusters following ionization by an extreme-ultraviolet (XUV) attosecond pulse train, representing a first step towards a time-resolved analysis. Typically, a large background signal in the experiment arises from water monomers and carrier gas used in the cluster source. We report a protocol to quantify this background in order to eliminate it from the experimental spectra. We disentangle the accumulated XUV photoionization signal into contributions from the background species and the photoelectron spectra from the clusters. This proof-of-principle study demonstrates feasibility of background free photoelectron spectra of neutral water clusters ionized by XUV combs and paves the way for the detailed time-resolved analysis of the underlying dynamics.
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13
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Lu QB. Reaction Cycles of Halogen Species in the Immune Defense: Implications for Human Health and Diseases and the Pathology and Treatment of COVID-19. Cells 2020; 9:cells9061461. [PMID: 32545714 PMCID: PMC7349336 DOI: 10.3390/cells9061461] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Revised: 06/01/2020] [Accepted: 06/10/2020] [Indexed: 12/12/2022] Open
Abstract
There is no vaccine or specific antiviral treatment for COVID-19, which is causing a global pandemic. One current focus is drug repurposing research, but those drugs have limited therapeutic efficacies and known adverse effects. The pathology of COVID-19 is essentially unknown. Without this understanding, it is challenging to discover a successful treatment to be approved for clinical use. This paper addresses several key biological processes of reactive oxygen, halogen and nitrogen species (ROS, RHS and RNS) that play crucial physiological roles in organisms from plants to humans. These include why superoxide dismutases, the enzymes to catalyze the formation of H2O2, are required for protecting ROS-induced injury in cell metabolism, why the amount of ROS/RNS produced by ionizing radiation at clinically relevant doses is ~1000 fold lower than the endogenous ROS/RNS level routinely produced in the cell and why a low level of endogenous RHS plays a crucial role in phagocytosis for immune defense. Herein we propose a plausible amplification mechanism in immune defense: ozone-depleting-like halogen cyclic reactions enhancing RHS effects are responsible for all the mentioned physiological functions, which are activated by H2O2 and deactivated by NO signaling molecule. Our results show that the reaction cycles can be repeated thousands of times and amplify the RHS pathogen-killing (defense) effects by 100,000 fold in phagocytosis, resembling the cyclic ozone-depleting reactions in the stratosphere. It is unraveled that H2O2 is a required protective signaling molecule (angel) in the defense system for human health and its dysfunction can cause many diseases or conditions such as autoimmune disorders, aging and cancer. We also identify a class of potent drugs for effective treatment of invading pathogens such as HIV and SARS-CoV-2 (COVID-19), cancer and other diseases, and provide a molecular mechanism of action of the drugs or candidates.
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Affiliation(s)
- Qing-Bin Lu
- Department of Physics and Astronomy and Department of Biology, University of Waterloo, 200 University Avenue West, Waterloo, ON N2L 3G1, Canada
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14
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Ban L, Gartmann TE, Yoder BL, Signorell R. Low-Energy Electron Escape from Liquid Interfaces: Charge and Quantum Effects. PHYSICAL REVIEW LETTERS 2020; 124:013402. [PMID: 31976689 DOI: 10.1103/physrevlett.124.013402] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Indexed: 05/27/2023]
Abstract
The high surface sensitivity and controlled surface charge state of submicron sized droplets is exploited to study low-energy electron transport through liquid interfaces using photoelectron imaging. Already a few charges on a droplet are found to modify the photoelectron images significantly. For narrow escape barriers, the comparison with an electron scattering model reveals pronounced quantum effects in the form of above-barrier reflections at electron kinetic energies below about 1 eV. The observed susceptibility to the characteristics of the electron escape barrier might provide access to these properties for liquid interfaces, which are generally difficult to investigate.
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Affiliation(s)
- Loren Ban
- Department of Chemistry and Applied Biosciences, Laboratory of Physical Chemistry, ETH Zürich, Vladimir-Prelog Weg 2, CH-8093 Zürich, Switzerland
| | - Thomas E Gartmann
- Department of Chemistry and Applied Biosciences, Laboratory of Physical Chemistry, ETH Zürich, Vladimir-Prelog Weg 2, CH-8093 Zürich, Switzerland
| | - Bruce L Yoder
- Department of Chemistry and Applied Biosciences, Laboratory of Physical Chemistry, ETH Zürich, Vladimir-Prelog Weg 2, CH-8093 Zürich, Switzerland
| | - R Signorell
- Department of Chemistry and Applied Biosciences, Laboratory of Physical Chemistry, ETH Zürich, Vladimir-Prelog Weg 2, CH-8093 Zürich, Switzerland
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15
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Structure and spectrum of the hydrated electron. A combined quantum chemical statistical mechanical simulation. J Mol Liq 2019. [DOI: 10.1016/j.molliq.2019.111300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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16
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Rivas N, Sciaini G, Marceca E. Static and dynamic scavenging of ammoniated electrons by nitromethane. Phys Chem Chem Phys 2019; 21:21972-21978. [DOI: 10.1039/c9cp03342d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We studied the time-resolved scavenging efficiency of nitromethane for transient electron species in liquid ammonia, at a temperature of 298 K.
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Affiliation(s)
- Nicolás Rivas
- The Ultrafast Electron Imaging Lab
- Department of Chemistry and Waterloo Institute for Nanotechnology
- University of Waterloo
- Waterloo
- Canada
| | - Germán Sciaini
- The Ultrafast Electron Imaging Lab
- Department of Chemistry and Waterloo Institute for Nanotechnology
- University of Waterloo
- Waterloo
- Canada
| | - Ernesto Marceca
- Department of Inorganic
- Analytical and Physical Chemistry-FCEN
- Universidad de Buenos Aires and INQUIMAE-CONICET. Cdad. Universitaria
- Buenos Aires C1428EGA
- Argentina
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Auburger P, Kemeny I, Bertram C, Ligges M, Bockstedte M, Bovensiepen U, Morgenstern K. Microscopic Insight into Electron-Induced Dissociation of Aromatic Molecules on Ice. PHYSICAL REVIEW LETTERS 2018; 121:206001. [PMID: 30500234 DOI: 10.1103/physrevlett.121.206001] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2018] [Indexed: 06/09/2023]
Abstract
We use scanning tunneling microscopy, photoelectron spectroscopy, and ab initio calculations to investigate the electron-induced dissociation of halogenated benzene molecules adsorbed on ice. Dissociation of halobenzene is triggered by delocalized excess electrons attaching to the π^{*} orbitals of the halobenzenes from where they are transferred to σ^{*} orbitals. The latter orbitals provide a dissociative potential surface. Adsorption on ice sufficiently lowers the energy barrier for the transfer between the orbitals to facilitate dissociation of bromo- and chloro- but not of flourobenzene at cryogenic temperatures. Our results shed light on the influence of environmentally important ice particles on the reactivity of halogenated aromatic molecules.
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Affiliation(s)
- Philipp Auburger
- Solid State Theory, Friedrich-Alexander University Erlangen-Nürnberg, Staudstr. 7B2, D-91058 Erlangen, Germany
| | - Ishita Kemeny
- Faculty of Physics, University of Duisburg-Essen, Lotharstr. 1, D-47057 Duisburg, Germany
| | - Cord Bertram
- Faculty of Physics, University of Duisburg-Essen, Lotharstr. 1, D-47057 Duisburg, Germany
- Physical Chemistry I, Ruhr-Universität Bochum, Universitätsstr. 150, D-44801 Bochum, Germany
| | - Manuel Ligges
- Faculty of Physics, University of Duisburg-Essen, Lotharstr. 1, D-47057 Duisburg, Germany
| | - Michel Bockstedte
- Solid State Theory, Friedrich-Alexander University Erlangen-Nürnberg, Staudstr. 7B2, D-91058 Erlangen, Germany
- Department of Chemistry and Physics of Materials, Paris-Lodron University Salzburg, Jakob-Haringer-Str. 2a, A-5020 Salzburg, Austria
| | - Uwe Bovensiepen
- Faculty of Physics, University of Duisburg-Essen, Lotharstr. 1, D-47057 Duisburg, Germany
| | - Karina Morgenstern
- Physical Chemistry I, Ruhr-Universität Bochum, Universitätsstr. 150, D-44801 Bochum, Germany
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18
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Zhao Y, Wang W, Feng W, Wang W, Li P. Theoretical Insights into the Interaction Mechanisms between Nitric Acid and Nitrous Oxide Initiated by an Excess Electron. J Phys Chem A 2018; 122:7312-7319. [PMID: 30203973 DOI: 10.1021/acs.jpca.8b04775] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Nitric acid (HNO3) and nitrous oxide (N2O) play an important role in the atmospheric chemistry in regulating the global environment and climate changes. In this study, the interaction mechanisms between them have been systematically investigated before and after the electron capture employing the density functional theory in combination with the AIM, NBO, and ab initio molecular dynamics calculations. It was found that HNO3 and N2O can form transient complexes through intermolecular H-bonds. HNNO, OH, and NO2 free radicals can be produced after the electron capture of the formed complexes, providing an alternative source of these radicals in the atmosphere. The present results not only can provide new insights into the transformation of the HNO3 and N2O atmospheric species but also can enable us to better understand the potential role of the free electron in the atmosphere.
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Affiliation(s)
- Yun Zhao
- Key Laboratory of Life-Organic Analysis, School of Chemistry and Chemical Engineering , Qufu Normal University , Qufu 273165 , P. R. China
| | - Weihua Wang
- Key Laboratory of Life-Organic Analysis, School of Chemistry and Chemical Engineering , Qufu Normal University , Qufu 273165 , P. R. China
| | - Wenling Feng
- Key Laboratory of Life-Organic Analysis, School of Chemistry and Chemical Engineering , Qufu Normal University , Qufu 273165 , P. R. China
| | - Wenliang Wang
- Key Laboratory of Life-Organic Analysis, School of Chemistry and Chemical Engineering , Qufu Normal University , Qufu 273165 , P. R. China
| | - Ping Li
- Key Laboratory of Life-Organic Analysis, School of Chemistry and Chemical Engineering , Qufu Normal University , Qufu 273165 , P. R. China
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19
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Theoretical Insights into the Electron Capture Behavior of H₂SO₄···N₂O Complex: A DFT and Molecular Dynamics Study. Molecules 2018; 23:molecules23092349. [PMID: 30217087 PMCID: PMC6225230 DOI: 10.3390/molecules23092349] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Revised: 09/04/2018] [Accepted: 09/05/2018] [Indexed: 11/16/2022] Open
Abstract
Both sulfuric acid (H2SO4) and nitrous oxide (N2O) play a central role in the atmospheric chemistry in regulating the global environment and climate changes. In this study, the interaction behavior between H2SO4 and N2O before and after electron capture has been explored using the density functional theory (DFT) method as well as molecular dynamics simulation. The intermolecular interactions have been characterized by atoms in molecules (AIM), natural bond orbital (NBO), and reduced density gradient (RDG) analyses, respectively. It was found that H2SO4 and N2O can form two transient molecular complexes via intermolecular H-bonds within a certain timescale. However, two molecular complexes can be transformed into OH radical, N2, and HSO4− species upon electron capture, providing an alternative formation source of OH radical in the atmosphere. Expectedly, the present findings not only can provide new insights into the transformation behavior of H2SO4 and N2O, but also can enable us to better understand the potential role of the free electron in driving the proceeding of the relevant reactions in the atmosphere.
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20
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Fárník M, Lengyel J. Mass spectrometry of aerosol particle analogues in molecular beam experiments. MASS SPECTROMETRY REVIEWS 2018; 37:630-651. [PMID: 29178389 DOI: 10.1002/mas.21554] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2017] [Accepted: 10/25/2017] [Indexed: 05/26/2023]
Abstract
Nanometer-size particles such as ultrafine aerosol particles, ice nanoparticles, water nanodroplets, etc, play an important, however, not yet fully understood role in the atmospheric chemistry and physics. These species are often composed of water with admixture of other atmospherically relevant molecules. To mimic and investigate such particles in laboratory experiments, mixed water clusters with atmospherically relevant molecules can be generated in molecular beams and studied by various mass spectrometric methods. The present review demonstrates that such experiments can provide unprecedented details of reaction mechanisms, and detailed insight into the photon-, electron-, and ion-induced processes relevant to the atmospheric chemistry. After a brief outline of the molecular beam preparation, cluster properties, and ionization methods, we focus on the mixed clusters with various atmospheric molecules, such as hydrated sulfuric acid and nitric acid clusters, Nx Oy and halogen-containing molecules with water. A special attention is paid to their reactivity and solvent effects of water molecules on the observed processes.
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Affiliation(s)
- Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Prague, Czech Republic
| | - Jozef Lengyel
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Prague, Czech Republic
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Innsbruck, Austria
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21
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Gartmann TE, Hartweg S, Ban L, Chasovskikh E, Yoder BL, Signorell R. Electron scattering in large water clusters from photoelectron imaging with high harmonic radiation. Phys Chem Chem Phys 2018; 20:16364-16371. [PMID: 29872831 DOI: 10.1039/c8cp02148a] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Low-energy electron scattering in water clusters (H2O)n with average cluster sizes of n < 700 is investigated by angle-resolved photoelectron spectroscopy using high harmonic radiation at photon energies of 14.0, 20.3, and 26.5 eV for ionization from the three outermost valence orbitals. The measurements probe the evolution of the photoelectron anisotropy parameter β as a function of cluster size. A remarkably steep decrease of β with increasing cluster size is observed, which for the largest clusters reaches liquid bulk values. Detailed electron scattering calculations reveal that neither gas nor condensed phase scattering can explain the cluster data. Qualitative agreement between experiment and simulations is obtained with scattering calculations that treat cluster scattering as an intermediate case between gas and condensed phase scattering.
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Affiliation(s)
- Thomas E Gartmann
- Department of Chemistry and Applied Biosciences, Laboratory of Physical Chemistry, ETH Zürich, Vladimir-Prelog-Weg 2, CH-8093 Zürich, Switzerland.
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22
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Affiliation(s)
- John M. Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210
| | - Marc P. Coons
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210
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23
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24
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Lengyel J, van der Linde C, Fárník M, Beyer MK. The reaction of CF2Cl2 with gas-phase hydrated electrons. Phys Chem Chem Phys 2016; 18:23910-5. [PMID: 27523883 PMCID: PMC7116337 DOI: 10.1039/c6cp01976e] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The reaction of dichlorodifluoromethane (CF2Cl2) with hydrated electrons (H2O)n(-) (n = 30-86) in the gas phase was studied using Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry. The hydrated electron reacts with CF2Cl2, forming (H2O)mCl(-) with a rate constant of (8.6 ± 2.2) × 10(-10) cm(3) s(-1), corresponding to an efficiency of 57 ± 15%. The reaction enthalpy was determined using nanocalorimetry, revealing a strongly exothermic reaction with ΔHr(CF2Cl2, 298 K) = -208 ± 41 kJ mol(-1). The combination of the measured reaction enthalpy with thermochemical data from the condensed phase yields a C-Cl bond dissociation enthalpy (BDE) ΔHC-Cl(CF2Cl2, 298 K) = 355 ± 41 kJ mol(-1) that agrees within error limits with the predicted values from quantum chemical calculations and published BDEs.
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Affiliation(s)
- Jozef Lengyel
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens-Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria
| | - Christian van der Linde
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens-Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry v.v.i., Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - Martin K. Beyer
- Institut für Ionenphysik und Angewandte Physik, Leopold-Franzens-Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria
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25
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Ásgeirsson V, Bauer CA, Grimme S. Unimolecular decomposition pathways of negatively charged nitriles by ab initio molecular dynamics. Phys Chem Chem Phys 2016; 18:31017-31026. [DOI: 10.1039/c6cp06180j] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Ab initio MD simulations reveal mechanistic details of the fragmentation reactions of molecular anions after low-energy electron attachment.
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Affiliation(s)
- Vilhjálmur Ásgeirsson
- Mulliken Center for Theoretical Chemistry
- Institute of Physical and Theoretical Chemistry
- University of Bonn
- 53115 Bonn
- Germany
| | - Christoph A. Bauer
- Mulliken Center for Theoretical Chemistry
- Institute of Physical and Theoretical Chemistry
- University of Bonn
- 53115 Bonn
- Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry
- Institute of Physical and Theoretical Chemistry
- University of Bonn
- 53115 Bonn
- Germany
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26
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Herbert JM. The Quantum Chemistry of Loosely-Bound Electrons. REVIEWS IN COMPUTATIONAL CHEMISTRY 2015. [DOI: 10.1002/9781118889886.ch8] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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27
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Poterya V, Kočišek J, Lengyel J, Svrčková P, Pysanenko A, Hollas D, Slavíček P, Fárník M. Clustering and Photochemistry of Freon CF2Cl2 on Argon and Ice Nanoparticles. J Phys Chem A 2014; 118:4740-9. [DOI: 10.1021/jp503983x] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Viktoriya Poterya
- J.
Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 182 23 Prague 8, Czech Republic
| | - Jaroslav Kočišek
- J.
Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 182 23 Prague 8, Czech Republic
| | - Jozef Lengyel
- J.
Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 182 23 Prague 8, Czech Republic
- Department
of Physical Chemistry, Institute of Chemical Technology Prague, Technická
5, 166 28 Prague 6, Czech Republic
| | - Pavla Svrčková
- J.
Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 182 23 Prague 8, Czech Republic
- Department
of Physical Chemistry, Institute of Chemical Technology Prague, Technická
5, 166 28 Prague 6, Czech Republic
| | - Andriy Pysanenko
- J.
Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 182 23 Prague 8, Czech Republic
| | - Daniel Hollas
- Department
of Physical Chemistry, Institute of Chemical Technology Prague, Technická
5, 166 28 Prague 6, Czech Republic
| | - Petr Slavíček
- J.
Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 182 23 Prague 8, Czech Republic
- Department
of Physical Chemistry, Institute of Chemical Technology Prague, Technická
5, 166 28 Prague 6, Czech Republic
| | - Michal Fárník
- J.
Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 182 23 Prague 8, Czech Republic
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28
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Smyth M, Kohanoff J, Fabrikant II. Electron-induced hydrogen loss in uracil in a water cluster environment. J Chem Phys 2014; 140:184313. [DOI: 10.1063/1.4874841] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
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29
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Affiliation(s)
- Bernd Abel
- Leibniz Institute of Surface Modification (IOM), Chemical Department, D-04318 Leipzig, Germany, and Wilhelm-Ostwald Institute for Physical and Theoretical Chemistry, D-04103 Leipzig, Germany;
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30
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Limão-Vieira P, Anzai K, Kato H, Hoshino M, Ferreira da Silva F, Duflot D, Mogi D, Tanioka T, Tanaka H. Electronic excitation to singlet states of 1,3-C4F6, c-C4F6 and 2-C4F6 by electron impact--electron energy-loss spectroscopy and ab initio calculations. J Phys Chem A 2012; 116:10529-38. [PMID: 23074974 DOI: 10.1021/jp307599y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report on the first measurements of the electron impact electronic excitation cross sections for C(4)F(6) isomers, hexafluoro-1,3-butadiene (1,3-C(4)F(6)), hexafluorocyclobutene (c-C(4)F(6)), and hexafluoro-2-butyne (2-C(4)F(6)), measured at 100 eV, 3° scattering angle, while sweeping the energy loss over the range 2.0-15.0 eV. Under these experimental conditions, optically allowed transitions are favored. The electronic state spectroscopy has been investigated and the assignments supported by quantum chemical calculations. The n = 3 members of the Rydberg series have been assigned converging to the lowest ionization energy limits of the C(4)F(6) isomers and classified according to the magnitude of the quantum defects (δ).
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Affiliation(s)
- P Limão-Vieira
- Department of Physics, Sophia University, Chiyoda-ku, Tokyo 102-8554, Japan.
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31
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Fabrikant II, Caprasecca S, Gallup GA, Gorfinkiel JD. Electron attachment to molecules in a cluster environment. J Chem Phys 2012; 136:184301. [PMID: 22583281 DOI: 10.1063/1.4706604] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Low-energy dissociative electron attachment (DEA) to the CF(2)Cl(2) and CF(3)Cl molecules in a water cluster environment is investigated theoretically. Calculations are performed for the water trimer and water hexamer. It is shown that the DEA cross section is strongly enhanced when the attaching molecule is embedded in a water cluster, and that this cross section grows as the number of water molecules in the cluster increases. This growth is explained by a trapping effect that is due to multiple scattering by water molecules while the electron is trapped in the cluster environment. The trapping increases the resonance lifetime and the negative ion survival probability. This confirms qualitatively existing experiments on electron attachment to the CF(2)Cl(2) molecule placed on the surface of H(2)O ice. The DEA cross sections are shown to be very sensitive to the position of the attaching molecule within the cluster and the orientation of the electron beam relative to the cluster.
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Affiliation(s)
- I I Fabrikant
- Department of Physical Sciences, The Open University, Walton Hall, Milton Keynes MK7 6AA, United Kingdom.
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32
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Rezaee M, Cloutier P, Bass AD, Michaud M, Hunting DJ, Sanche L. Absolute cross section for low-energy-electron damage to condensed macromolecules: a case study of DNA. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:031913. [PMID: 23030950 PMCID: PMC3815646 DOI: 10.1103/physreve.86.031913] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/27/2012] [Revised: 08/24/2012] [Indexed: 06/01/2023]
Abstract
Cross sections (CSs) for the interaction of low-energy electrons (LEE) with condensed macromolecules are essential parameters for accurate modeling of radiation-induced molecular decomposition and chemical synthesis. Electron irradiation of dry nanometer-scale macromolecular solid films has often been employed to measure CSs and other quantitative parameters for LEE interactions. Since such films have thicknesses comparable with electron thermalization distances, energy deposition varies throughout the film. Moreover, charge accumulation occurring inside the films shields a proportion of the macromolecules from electron irradiation. Such effects complicate the quantitative comparison of the CSs obtained in films of different thicknesses and limit the applicability of such measurements. Here, we develop a simple mathematical model, termed the molecular survival model, that employs a CS for a particular damage process together with an attenuation length related to the total CS, to investigate how a measured CS might be expected to vary with experimental conditions. As a case study, we measure the absolute CS for the formation of DNA strand breaks (SBs) by electron irradiation at 10 and 100 eV of lyophilized plasmid DNA films with thicknesses between 10 and 30 nm. The measurements are shown to depend strongly on the thickness and charging condition of the nanometer-scale films. Such behaviors are in accord with the model and support its validity. Via this analysis, the CS obtained for SB damage is nearly independent of film thickness and charging effects. In principle, this model can be adapted to provide absolute CSs for electron-induced damage or reactions occurring in other molecular solids across a wider range of experimental conditions.
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Affiliation(s)
- Mohammad Rezaee
- Groupe en Sciences des Radiations, Départment de Médecine Nucléaire et Radiobiologie, Faculté de Médecine et des Sciences de la Santé, Université de Sherbrooke, Sherbrooke, Québec, Canada J1H 5N4.
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33
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Park Y, Noh HA, Cho H. Effect of Low-Energy Electron Irradiation on DNA Damage by Fe3+Ion. Radiat Res 2012; 177:775-80. [DOI: 10.1667/rr2844.1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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34
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Limão-Vieira P, Horie M, Kato H, Hoshino M, Blanco F, García G, Buckman SJ, Tanaka H. Differential elastic electron scattering cross sections for CCl4 by 1.5–100 eV energy electron impact. J Chem Phys 2011; 135:234309. [DOI: 10.1063/1.3669429] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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35
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Direct observation of ultrafast-electron-transfer reactions unravels high effectiveness of reductive DNA damage. Proc Natl Acad Sci U S A 2011; 108:11778-83. [PMID: 21730183 DOI: 10.1073/pnas.1104367108] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Both water and electron-transfer reactions play important roles in chemistry, physics, biology, and the environment. Oxidative DNA damage is a well-known mechanism, whereas the relative role of reductive DNA damage is unknown. The prehydrated electron (e(pre)-), a novel species of electrons in water, is a fascinating species due to its fundamental importance in chemistry, biology, and the environment. e(pre)- is an ideal agent to observe reductive DNA damage. Here, we report both the first in situ femtosecond time-resolved laser spectroscopy measurements of ultrafast-electron-transfer (UET) reactions of e(pre)- with various scavengers (KNO(3), isopropanol, and dimethyl sulfoxide) and the first gel electrophoresis measurements of DNA strand breaks induced by e(pre)- and OH(•) radicals co-produced by two-UV-photon photolysis of water. We strikingly found that the yield of reductive DNA strand breaks induced by each e(pre)- is twice the yield of oxidative DNA strand breaks induced by each OH(•) radical. Our results not only unravel the long-standing mystery about the relative role of radicals in inducing DNA damage under ionizing radiation, but also challenge the conventional notion that oxidative damage is the main pathway for DNA damage. The results also show the potential of femtomedicine as a new transdisciplinary frontier and the broad significance of UET reactions of e(pre)- in many processes in chemistry, physics, biology, and the environment.
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36
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Siefermann KR, Abel B. The Hydrated Electron: A Seemingly Familiar Chemical and Biological Transient. Angew Chem Int Ed Engl 2011; 50:5264-72. [DOI: 10.1002/anie.201006521] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2010] [Revised: 02/15/2011] [Indexed: 11/05/2022]
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37
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Siefermann KR, Abel B. Das hydratisierte Elektron - eine scheinbar vertraute transiente Spezies in chemischen und biologischen Systemen. Angew Chem Int Ed Engl 2011. [DOI: 10.1002/ange.201006521] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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38
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Li P, Ma Z, Wang W, Song R, Zhai Y, Bi S, Sun H, Bu Y. Theoretical studies on the electron capture properties of the H2SO4...HOO˙ complex and its implications as an alternative source of HOOH. Phys Chem Chem Phys 2011; 13:5931-9. [PMID: 21336375 DOI: 10.1039/c0cp02298e] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
To better understand the potential role of sulfuric acid aerosols in the atmosphere, the electron capture properties of the H(2)SO(4)...HOO˙ complex have been systematically investigated by employing the MP2 and B3LYP methods in combination with the atoms in molecules (AIM) theory, energy decomposition analysis (EDA), and ab initio molecular dynamics. It was found that the electron capture process is a favorable reaction thermodynamically and kinetically. The excess electron can be captured by the HOO˙ fragment initially, and then the proton of the H(2)SO(4) fragment associated with the intermolecular H-bonds is transferred to the HOO˙ fragment without any activation barriers, resulting in the formation of the HOOH species directly. Therefore, the electron capture process of the H(2)SO(4)...HOO˙ complex provides an alternative source of HOOH in the atmosphere. The nature of the coupling interactions in the electron capture products are clarified, and the most stable anionic complex is also determined. Additionally, the influences of the adjacent water molecules on the electron capture properties are investigated, as well as the distinct IR features of the most stable electron capture product.
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Affiliation(s)
- Ping Li
- Key Laboratory of Life-Organic Analysis, School of Chemistry and Chemical Engineering, Qufu Normal University, Qufu, P R China.
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39
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Balog R, Cicman P, Field D, Feketeová L, Hoydalsvik K, Jones NC, Field TA, Ziesel JP. Transmission and Trapping of Cold Electrons in Water Ice. J Phys Chem A 2011; 115:6820-4. [DOI: 10.1021/jp110475q] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Richard Balog
- Department of Physics and Astronomy, University of Aarhus, 8000 Aarhus C, Denmark
| | - Peter Cicman
- Department of Physics and Astronomy, University of Aarhus, 8000 Aarhus C, Denmark
| | - David Field
- Department of Physics and Astronomy, University of Aarhus, 8000 Aarhus C, Denmark
| | - Linda Feketeová
- Department of Physics and Astronomy, University of Aarhus, 8000 Aarhus C, Denmark
| | - Kristin Hoydalsvik
- Department of Physics and Astronomy, University of Aarhus, 8000 Aarhus C, Denmark
| | - Nykola C. Jones
- Institute for Storage Ring Facilities at Aarhus, University of Aarhus, 8000 Aarhus C, Denmark
| | - Thomas A. Field
- Department of Physics and Astronomy, Queen’s University Belfast, Belfast, BT7 1NN, United Kingdom
| | - Jean-Pierre Ziesel
- Laboratoire Collisions Agrégats Réactivité-IRSAMC, Université Paul Sabatier and CNRS-UMR 5589, 31062 Toulouse Cedex, France
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40
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Bhattacharya SK, Finn JM, Diep VP, Baletto F, Scandolo S. CCl(4) dissociation on the ice I(h) surface: an excess electron mediated process. Phys Chem Chem Phys 2010; 12:13034-6. [PMID: 20820567 DOI: 10.1039/c0cp00439a] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Dissociation of chlorofluorocarbons in the atmosphere is a heterogeneous process that takes place mainly on the surface of ice particles. Recently an enhancement of the dissociation rate due to excess electrons has been shown theoretically and correspondingly measured experimentally. Our density functional theory calculations show that CCl(4) dissociates due to an excess electron with an energy gain of 0.8 eV on the ice surface as opposed to in the gas phase. Through the use of ab initio molecular dynamics, an atomistic pathway for this dissociation has been elucidated, this pathway shows the capture of Cl(-) by the ice surface through a partial solvation mechanism, in agreement with recent experimental findings.
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Affiliation(s)
- Somesh Kr Bhattacharya
- Abdus Salam International Center for Theoretical Physics, Strada Costiera, 34014 Trieste, Italy
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Lu QB. Lu Replies:. PHYSICAL REVIEW LETTERS 2010; 105:169802. [DOI: 10.1103/physrevlett.105.169802] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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42
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Wang CR, Lu QB. Molecular Mechanism of the DNA Sequence Selectivity of 5-Halo-2′-Deoxyuridines as Potential Radiosensitizers. J Am Chem Soc 2010; 132:14710-3. [DOI: 10.1021/ja102883a] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Affiliation(s)
- Chun-Rong Wang
- Department of Physics and Astronomy and Departments of Biology and Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, Canada N2L 3G1
| | - Qing-Bin Lu
- Department of Physics and Astronomy and Departments of Biology and Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, Canada N2L 3G1
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43
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Binding energies, lifetimes and implications of bulk and interface solvated electrons in water. Nat Chem 2010; 2:274-9. [PMID: 21124507 DOI: 10.1038/nchem.580] [Citation(s) in RCA: 251] [Impact Index Per Article: 17.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2009] [Accepted: 01/26/2010] [Indexed: 01/14/2023]
Abstract
Solvated electrons in liquid water are one of the seemingly simplest, but most important, transients in chemistry and biology, but they have resisted disclosing important information about their energetics, binding motifs and dynamics. Here we report the first ultrafast liquid-jet photoelectron spectroscopy measurements of solvated electrons in liquid water. The results prove unequivocally the existence of solvated electrons bound at the water surface and of solvated electrons in the bulk solution, with vertical binding energies of 1.6 eV and 3.3 eV, respectively, and with lifetimes longer than 100 ps. The unexpectedly long lifetime of solvated electrons bound at the water surface is attributed to a free-energy barrier that separates surface and interior states. Beyond constituting important energetic and kinetic benchmark and reference data, the results also help to understand the mechanisms of a number of very efficient electron-transfer processes in nature.
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Fabrikant II. Recent progress in the theory of dissociative attachment: From diatomics to biomolecules. ACTA ACUST UNITED AC 2010. [DOI: 10.1088/1742-6596/204/1/012004] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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45
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Müller R, Grooss JU. Does cosmic-ray-induced heterogeneous chemistry influence stratospheric polar ozone loss? PHYSICAL REVIEW LETTERS 2009; 103:228501. [PMID: 20366127 DOI: 10.1103/physrevlett.103.228501] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2009] [Indexed: 05/29/2023]
Abstract
Cosmic-ray (CR) -induced heterogeneous reactions of halogenated species have been suggested to play the dominant role in causing the Antarctic ozone hole. However, measurements of total ozone in Antarctica do not show a compact and significant correlation with CR activity. Further, a substantial CR-induced heterogeneous loss of chlorofluorocarbons is incompatible with multiyear satellite observations of N2O and CFC-12. Thus, CR-induced heterogeneous reactions cannot be considered as an alternative mechanism causing the Antarctic ozone hole.
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Affiliation(s)
- Rolf Müller
- ICG-1, Forschungszentrum Jülich, 52425 Jülich, Germany.
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Souda R. Glass transition and crystallization dynamics of thin CCl2F2 films deposited on Ni(111), graphite, and water-ice films. J Chem Phys 2009; 131:164501. [DOI: 10.1063/1.3245865] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023] Open
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47
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Lu QB. Correlation between cosmic rays and ozone depletion. PHYSICAL REVIEW LETTERS 2009; 102:118501. [PMID: 19392251 DOI: 10.1103/physrevlett.102.118501] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2008] [Indexed: 05/27/2023]
Abstract
This Letter reports reliable satellite data in the period of 1980-2007 covering two full 11-yr cosmic ray (CR) cycles, clearly showing the correlation between CRs and ozone depletion, especially the polar ozone loss (hole) over Antarctica. The results provide strong evidence of the physical mechanism that the CR-driven electron-induced reaction of halogenated molecules plays the dominant role in causing the ozone hole. Moreover, this mechanism predicts one of the severest ozone losses in 2008-2009 and probably another large hole around 2019-2020, according to the 11-yr CR cycle.
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Affiliation(s)
- Q-B Lu
- Department of Physics, University of Waterloo, Waterloo, ON, N2L 3G1, Canada
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Müller R. Comment on “Resonant dissociative electron transfer of the presolvated electron to CCl4 in liquid: Direct observation and lifetime of the CCl4∗− transition state” [J. Chem. Phys. 128, 041102 (2008)]. J Chem Phys 2008; 129:027101; author reply 027102. [DOI: 10.1063/1.2953723] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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50
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Wang CR, Drew K, Luo T, Lu MJ, Lu QB. Response to “Comment on ‘Resonant dissociative electron transfer of the presolvated electron to CCl4 in liquid: Direct observation and lifetime of the CCl4∗− transition state’ [J. Chem. Phys. 129, 027101 (2008)]”. J Chem Phys 2008. [DOI: 10.1063/1.2953728] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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