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Sun W, Maseyk K, Lett C, Seibt U. Restricted internal diffusion weakens transpiration-photosynthesis coupling during heatwaves: Evidence from leaf carbonyl sulphide exchange. PLANT, CELL & ENVIRONMENT 2024; 47:1813-1833. [PMID: 38321806 DOI: 10.1111/pce.14840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 11/13/2023] [Accepted: 01/22/2024] [Indexed: 02/08/2024]
Abstract
Increasingly frequent and intense heatwaves threaten ecosystem health in a warming climate. However, plant responses to heatwaves are poorly understood. A key uncertainty concerns the intensification of transpiration when heatwaves suppress photosynthesis, known as transpiration-photosynthesis decoupling. Field observations of such decoupling are scarce, and the underlying physiological mechanisms remain elusive. Here, we use carbonyl sulphide (COS) as a leaf gas exchange tracer to examine potential mechanisms leading to transpiration-photosynthesis decoupling on a coast live oak in a southern California woodland in spring 2013. We found that heatwaves suppressed both photosynthesis and leaf COS uptake but increased transpiration or sustained it at non-heatwave levels throughout the day. Despite statistically significant decoupling between transpiration and photosynthesis, stomatal sensitivity to environmental factors did not change during heatwaves. Instead, midday photosynthesis during heatwaves was restricted by internal diffusion, as indicated by the lower internal conductance to COS. Thus, increased evaporative demand and nonstomatal limitation to photosynthesis act jointly to decouple transpiration from photosynthesis without altering stomatal sensitivity. Decoupling offered limited potential cooling benefits, questioning its effectiveness for leaf thermoregulation in xeric ecosystems. We suggest that adding COS to leaf and ecosystem flux measurements helps elucidate diverse physiological mechanisms underlying transpiration-photosynthesis decoupling.
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Affiliation(s)
- Wu Sun
- Department of Global Ecology, Carnegie Institution for Science, Stanford, California, USA
| | - Kadmiel Maseyk
- School of Environment, Earth and Ecosystem Sciences, The Open University, Milton Keynes, UK
| | - Céline Lett
- Department of Environmental Research and Innovation, Luxembourg Institute of Science and Technology, Belvaux, Luxembourg
| | - Ulli Seibt
- Department of Atmospheric and Oceanic Sciences, University of California, Los Angeles, California, USA
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2
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Chen B, Wang P, Wang S, Ju W, Liu Z, Zhang Y. Simulating canopy carbonyl sulfide uptake of two forest stands through an improved ecosystem model and parameter optimization using an ensemble Kalman filter. Ecol Modell 2023. [DOI: 10.1016/j.ecolmodel.2022.110212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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3
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Kohonen KM, Dewar R, Tramontana G, Mauranen A, Kolari P, Kooijmans LMJ, Papale D, Vesala T, Mammarella I. Intercomparison of methods to estimate gross primary production based on CO 2 and COS flux measurements. BIOGEOSCIENCES (ONLINE) 2022; 19:4067-4088. [PMID: 36171741 PMCID: PMC7613647 DOI: 10.5194/bg-19-4067-2022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Separating the components of ecosystem-scale carbon exchange is crucial in order to develop better models and future predictions of the terrestrial carbon cycle. However, there are several uncertainties and unknowns related to current photosynthesis estimates. In this study, we evaluate four different methods for estimating photosynthesis at a boreal forest at the ecosystem scale, of which two are based on carbon dioxide (CO2) flux measurements and two on carbonyl sulfide (COS) flux measurements. The CO2-based methods use traditional flux partitioning and artificial neural networks to separate the net CO2 flux into respiration and photosynthesis. The COS-based methods make use of a unique 5-year COS flux data set and involve two different approaches to determine the leaf-scale relative uptake ratio of COS and CO2 (LRU), of which one (LRUCAP) was developed in this study. LRUCAP was based on a previously tested stomatal optimization theory (CAP), while LRUPAR was based on an empirical relation to measured radiation. For the measurement period 2013-2017, the artificial neural network method gave a GPP estimate very close to that of traditional flux partitioning at all timescales. On average, the COS-based methods gave higher GPP estimates than the CO2-based estimates on daily (23% and 7% higher, using LRUPAR and LRUCAP, respectively) and monthly scales (20% and 3% higher), as well as a higher cumulative sum over 3 months in all years (on average 25% and 3% higher). LRUCAP was higher than LRU estimated from chamber measurements at high radiation, leading to underestimation of midday GPP relative to other GPP methods. In general, however, use of LRUCAP gave closer agreement with CO2-based estimates of GPP than use of LRUPAR. When extended to other sites, LRUCAP may be more robust than LRUPAR because it is based on a physiological model whose parameters can be estimated from simple measurements or obtained from the literature. In contrast, the empirical radiation relation in LRUPAR may be more site-specific. However, this requires further testing at other measurement sites.
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Affiliation(s)
- Kukka-Maaria Kohonen
- Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
| | - Roderick Dewar
- Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
- Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT 2601, Australia
| | - Gianluca Tramontana
- Image Processing Laboratory (IPL), Parc Científic Universitat de València, Universitat de València, Paterna, Spain
- Terrasystem s.r.l, Viterbo, Italy
| | - Aleksanteri Mauranen
- Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
| | - Pasi Kolari
- Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
| | - Linda M. J. Kooijmans
- Meteorology and Air Quality, Wageningen University and Research, Wageningen, the Netherlands
| | - Dario Papale
- DIBAF, Department for Innovation in Biological, Agro-food and Forest Systems, University of Tuscia, Viterbo, Italy
- IAFES, Euro-Mediterranean Center for Climate Change (CMCC), Viterbo, Italy
| | - Timo Vesala
- Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
- Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, Helsinki, Finland
| | - Ivan Mammarella
- Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
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4
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Sun W, Berry JA, Yakir D, Seibt U. Leaf relative uptake of carbonyl sulfide to CO 2 seen through the lens of stomatal conductance-photosynthesis coupling. THE NEW PHYTOLOGIST 2022; 235:1729-1742. [PMID: 35478172 DOI: 10.1111/nph.18178] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Accepted: 04/16/2022] [Indexed: 06/14/2023]
Abstract
Carbonyl sulfide (COS) has emerged as a multi-scale tracer for terrestrial photosynthesis. To infer ecosystem-scale photosynthesis from COS fluxes often requires knowledge of leaf relative uptake (LRU), the concentration-normalized ratio between leaf COS uptake and photosynthesis. However, current mechanistic understanding of LRU variability remains inadequate for deriving robust COS-based estimates of photosynthesis. We derive a set of closed-form equations to describe LRU responses to light, humidity and CO2 based on the Ball-Berry stomatal conductance model and the biochemical model of photosynthesis. This framework reproduces observed LRU responses: decreasing LRU with increasing light or decreasing humidity; it also predicts that LRU increases with ambient CO2 . By fitting the LRU equations to flux measurements on a C3 reed (Typha latifolia), we obtain physiological parameters that control LRU variability, including an estimate of the Ball-Berry slope of 7.1 without using transpiration measurements. Sensitivity tests reveal that LRU is more sensitive to photosynthetic capacity than to the Ball-Berry slope, indicating stomatal response to photosynthesis. This study presents a simple framework for interpreting observed LRU variability and upscaling LRU. The stoma-regulated LRU response to CO2 suggests that COS may offer a unique window into long-term stomatal acclimation to elevated CO2 .
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Affiliation(s)
- Wu Sun
- Department of Global Ecology, Carnegie Institution for Science, 260 Panama Street, Stanford, CA, 94305, USA
| | - Joseph A Berry
- Department of Global Ecology, Carnegie Institution for Science, 260 Panama Street, Stanford, CA, 94305, USA
| | - Dan Yakir
- Earth and Planetary Science, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Ulli Seibt
- Department of Atmospheric and Oceanic Sciences, University of California, Los Angeles, 520 Portola Plaza, Los Angeles, CA, 90095-1565, USA
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Mathur P, Roy S, Nasir Khan M, Mukherjee S. Hydrogen sulphide (H 2 S) in the hidden half: Role in root growth, stress signalling and rhizospheric interactions. PLANT BIOLOGY (STUTTGART, GERMANY) 2022; 24:559-568. [PMID: 35334141 DOI: 10.1111/plb.13417] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Accepted: 02/18/2022] [Indexed: 06/14/2023]
Abstract
Apart from nitric oxide (NO) and carbon monoxide (CO), hydrogen sulphide (H2 S) has emerged as a potential gasotransmitter that has regulatory roles in root differentiation, proliferation and stress signalling. H2 S metabolism in plants exhibits spatio-temporal differences that are intimately associated with sulphide signalling in the cytosol and other subcellular components, e.g. chloroplast and mitochondria. H2 S biosynthesis in plant organs uses both enzymatic and non-enzymatic pathways. H2 S generation in roots and aerial organs is modulated by developmental phase and changes in environmental stimuli. H2 S has an influential role in root development and in the nodulation process. Studies have revealed that H2 S is a part of the auxin and NO signalling pathways in roots, which induce lateral root formation. At the molecular level, exogenous application of H2 S regulates expression of several transcription factors, viz. LBD (Lateral organ Boundaries Domain), MYB (myeloblastosis) and AP2/ERF (Apetala 2/ Ethylene Response Factor), which stimulate upregulation of PpLBD16 (Lateral organ boundaries domain 16), thereby significantly increasing the number of lateral roots. Concomitantly, H2 S acts as a crucial signalling molecule in roots during various abiotic stresses, e.g. drought, salinity heavy metals (HMs), etc., and augments stress tolerance in plants. Interestingly, extensive crosstalk exists between H2 S, NO, ABA, calcium and ethylene during stress, which escalate plant defence and regulate plant growth and productivity. Hence, the present review will elaborate the role of H2 S in root development, stress alleviation, legume-Rhizobium symbiosis and rhizosphere signalling. The review also examines the mechanism of H2 S-mediated abiotic stress mitigation and cross-talk with other signaling molecules.
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Affiliation(s)
- P Mathur
- Microbiology Laboratory, Department of Botany, University of North Bengal, Darjeeling, India
| | - S Roy
- Plant Biochemistry Laboratory, Department of Botany, University of North Bengal, Darjeeling, India
| | - M Nasir Khan
- Department of Biology, Faculty of Science, College of Haql, University of Tabuk, Tabuk, Saudi Arabia
| | - S Mukherjee
- Department of Botany, Jangipur College, University of Kalyani, Jangipur, India
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Light and Water Conditions Co-Regulated Stomata and Leaf Relative Uptake Rate (LRU) during Photosynthesis and COS Assimilation: A Meta-Analysis. SUSTAINABILITY 2022. [DOI: 10.3390/su14052840] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
As a trace gas involved in hydration during plant photosynthesis, carbonyl sulfide (COS) and its leaf relative uptake rate (LRU) is used to reduce the uncertainties in simulations of gross primary productivity (GPP). In this study, 101 independent observations were collected from 22 studies. We extracted the LRU, stomatal conductance (gs), canopy COS and carbon dioxide (CO2) fluxes, and relevant environmental conditions (i.e., light, temperature, and humidity), as well as the atmospheric COS and CO2 concentrations (Ca,COS and Ca,CO2). Although no evidence was found showing that gs regulates LRU, they responded in opposite ways to diurnal variations of environmental conditions in both mixed forests (LRU: Hedges’d = −0.901, LnRR = −0.189; gs: Hedges’d = 0.785, LnRR = 0.739) and croplands dominated by C3 plants (Hedges’d = −0.491, LnRR = −0.371; gs: Hedges’d = 1.066, LnRR = 0.322). In this process, the stomata play an important role in COS assimilation (R2 = 0.340, p = 0.020) and further influence the interrelationship of COS and CO2 fluxes (R2 = 0.650, p = 0.000). Slight increases in light intensity (R2 = 1, p = 0.002) and atmospheric drought (R2 = 0.885, p = 0.005) also decreased the LRU. The LRU saturation points of Ca,COS and Ca,CO2 were observed when ΔCa,COS ≈ 13 ppt (R2 = 0.580, p = 0.050) or ΔCa,CO2 ≈ −18 ppm (R2 = 0.970, p = 0.003). This study concluded that during plant photosynthesis and COS assimilation, light and water conditions co-regulated the stomata and LRU.
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7
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Cochavi A, Amer M, Stern R, Tatarinov F, Migliavacca M, Yakir D. Differential responses to two heatwave intensities in a Mediterranean citrus orchard are identified by combining measurements of fluorescence and carbonyl sulfide (COS) and CO 2 uptake. THE NEW PHYTOLOGIST 2021; 230:1394-1406. [PMID: 33525059 DOI: 10.1111/nph.17247] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2020] [Accepted: 01/25/2021] [Indexed: 06/12/2023]
Abstract
The impact of extreme climate episodes such as heatwaves on plants physiological functioning and survival may depend on the event intensity, which requires quantification. We unraveled the distinct impacts of intense (HW) and intermediate (INT) heatwave days on carbon uptake, and the underlying changes in the photosynthetic system, in a Mediterranean citrus orchard using leaf active (pulse amplitude modulation; PAM) and canopy level passive (sun-induced; SIF) fluorescence measurements, together with CO2 , water vapor, and carbonyl sulfide (COS) exchange measurements. Compared to normal (N) days, gross CO2 uptake fluxes (gross primary production, GPP) were significantly reduced during HW days, but only slightly decreased during INT days. By contrast, COS uptake flux and SIFA (at 760 nm) decreased during both HW and INT days, which was reflected in leaf internal CO2 concentrations and in nonphotochemical quenching, respectively. Intense (HW) heatwave conditions also resulted in a substantial decrease in electron transport rates, measured using leaf-scale fluorescence, and an increase in the fractional energy consumption in photorespiration. Using the combined proxy approach, we demonstrate a differential ecosystem response to different heatwave intensities, which allows the trees to preserve carbon assimilation during INT days but not during HW days.
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Affiliation(s)
- Amnon Cochavi
- Earth & Planetary Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Madi Amer
- Earth & Planetary Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Rafael Stern
- Earth & Planetary Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Fyodor Tatarinov
- Earth & Planetary Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
| | - Mirco Migliavacca
- Max Planck Institute for Biogeochemistry, Hans Knoell Straße 10, Jena, D-07745, Germany
| | - Dan Yakir
- Earth & Planetary Sciences, Weizmann Institute of Science, Rehovot, 76100, Israel
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8
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Hydrogen sulfide (H 2S) signaling in plant development and stress responses. ABIOTECH 2021; 2:32-63. [PMID: 34377579 PMCID: PMC7917380 DOI: 10.1007/s42994-021-00035-4] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/08/2020] [Accepted: 02/03/2021] [Indexed: 12/13/2022]
Abstract
ABSTRACT Hydrogen sulfide (H2S) was initially recognized as a toxic gas and its biological functions in mammalian cells have been gradually discovered during the past decades. In the latest decade, numerous studies have revealed that H2S has versatile functions in plants as well. In this review, we summarize H2S-mediated sulfur metabolic pathways, as well as the progress in the recognition of its biological functions in plant growth and development, particularly its physiological functions in biotic and abiotic stress responses. Besides direct chemical reactions, nitric oxide (NO) and hydrogen peroxide (H2O2) have complex relationships with H2S in plant signaling, both of which mediate protein post-translational modification (PTM) to attack the cysteine residues. We also discuss recent progress in the research on the three types of PTMs and their biological functions in plants. Finally, we propose the relevant issues that need to be addressed in the future research. GRAPHIC ABSTRACT SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s42994-021-00035-4.
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9
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From Elemental Sulfur to Hydrogen Sulfide in Agricultural Soils and Plants. Molecules 2019; 24:molecules24122282. [PMID: 31248198 PMCID: PMC6630323 DOI: 10.3390/molecules24122282] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2019] [Revised: 06/14/2019] [Accepted: 06/16/2019] [Indexed: 12/21/2022] Open
Abstract
Sulfur is an essential element in determining the productivity and quality of agricultural products. It is also an element associated with tolerance to biotic and abiotic stress in plants. In agricultural practice, sulfur has broad use in the form of sulfate fertilizers and, to a lesser extent, as sulfite biostimulants. When used in the form of bulk elemental sulfur, or micro- or nano-sulfur, applied both to the soil and to the canopy, the element undergoes a series of changes in its oxidation state, produced by various intermediaries that apparently act as biostimulants and promoters of stress tolerance. The final result is sulfate S+6, which is the source of sulfur that all soil organisms assimilate and that plants absorb by their root cells. The changes in the oxidation states of sulfur S0 to S+6 depend on the action of specific groups of edaphic bacteria. In plant cells, S+6 sulfate is reduced to S−2 and incorporated into biological molecules. S−2 is also absorbed by stomata from H2S, COS, and other atmospheric sources. S−2 is the precursor of inorganic polysulfides, organic polysulfanes, and H2S, the action of which has been described in cell signaling and biostimulation in plants. S−2 is also the basis of essential biological molecules in signaling, metabolism, and stress tolerance, such as reactive sulfur species (RSS), SAM, glutathione, and phytochelatins. The present review describes the dynamics of sulfur in soil and plants, considering elemental sulfur as the starting point, and, as a final point, the sulfur accumulated as S−2 in biological structures. The factors that modify the behavior of the different components of the sulfur cycle in the soil–plant–atmosphere system, and how these influences the productivity, quality, and stress tolerance of crops, are described. The internal and external factors that influence the cellular production of S−2 and polysulfides vs. other S species are also described. The impact of elemental sulfur is compared with that of sulfates, in the context of proper soil management. The conclusion is that the use of elemental sulfur is recommended over that of sulfates, since it is beneficial for the soil microbiome, for productivity and nutritional quality of crops, and also allows the increased tolerance of plants to environmental stresses.
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Influences of light and humidity on carbonyl sulfide-based estimates of photosynthesis. Proc Natl Acad Sci U S A 2019; 116:2470-2475. [PMID: 30683727 PMCID: PMC6377472 DOI: 10.1073/pnas.1807600116] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Carbonyl sulfide (COS) measurements enable quantification of terrestrial photosynthesis, which cannot be directly measured at scales greater than the leaf level. The accuracy of COS-based estimates of gross primary production (GPP) depends on how we relate the COS uptake to that of CO2. This study shows that COS-based GPP estimates will be significantly overestimated if the different environmental responses of COS and CO2 uptake are not taken into account. These findings are relevant for studies that rely on COS to quantify ecosystem to regional scale GPP, and support the use of a COS-based approach to constrain ecosystem flux partitioning. Moreover, the strong stomatal control on COS uptake shown in this study makes COS a suitable tracer for stomatal diffusion. Understanding climate controls on gross primary productivity (GPP) is crucial for accurate projections of the future land carbon cycle. Major uncertainties exist due to the challenge in separating GPP and respiration from observations of the carbon dioxide (CO2) flux. Carbonyl sulfide (COS) has a dominant vegetative sink, and plant COS uptake is used to infer GPP through the leaf relative uptake (LRU) ratio of COS to CO2 fluxes. However, little is known about variations of LRU under changing environmental conditions and in different phenological stages. We present COS and CO2 fluxes and LRU of Scots pine branches measured in a boreal forest in Finland during the spring recovery and summer. We find that the diurnal dynamics of COS uptake is mainly controlled by stomatal conductance, but the leaf internal conductance could significantly limit the COS uptake during the daytime and early in the season. LRU varies with light due to the differential light responses of COS and CO2 uptake, and with vapor pressure deficit (VPD) in the peak growing season, indicating a humidity-induced stomatal control. Our COS-based GPP estimates show that it is essential to incorporate the variability of LRU with environmental variables for accurate estimation of GPP on ecosystem, regional, and global scales.
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11
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Nitrogen Fertilization Reduces the Capacity of Soils to Take up Atmospheric Carbonyl Sulphide. SOIL SYSTEMS 2018. [DOI: 10.3390/soilsystems2040062] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Soils are an important carbonyl sulphide (COS) sink. However, they can also act as sources of COS to the atmosphere. Here we demonstrate that variability in the soil COS sink and source strength is strongly linked to the available soil inorganic nitrogen (N) content across a diverse range of biomes in Europe. We revealed in controlled laboratory experiments that a one-off addition of ammonium nitrate systematically decreased the COS uptake rate whilst simultaneously increasing the COS production rate of soils from boreal and temperate sites in Europe. Furthermore, we found strong links between variations in the two gross COS fluxes, microbial biomass, and nitrate and ammonium contents, providing new insights into the mechanisms involved. Our findings provide evidence for how the soil–atmosphere exchange of COS is likely to vary spatially and temporally, a necessary step for constraining the role of soils and land use in the COS mass budget.
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12
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Gimeno TE, Ogée J, Royles J, Gibon Y, West JB, Burlett R, Jones SP, Sauze J, Wohl S, Benard C, Genty B, Wingate L. Bryophyte gas-exchange dynamics along varying hydration status reveal a significant carbonyl sulphide (COS) sink in the dark and COS source in the light. THE NEW PHYTOLOGIST 2017; 215:965-976. [PMID: 28467665 PMCID: PMC5518222 DOI: 10.1111/nph.14584] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2016] [Accepted: 03/21/2017] [Indexed: 05/20/2023]
Abstract
Carbonyl sulphide (COS) is a potential tracer of gross primary productivity (GPP), assuming a unidirectional COS flux into the vegetation that scales with GPP. However, carbonic anhydrase (CA), the enzyme that hydrolyses COS, is expected to be light independent, and thus plants without stomata should continue to take up COS in the dark. We measured net CO2 (AC ) and COS (AS ) uptake rates from two astomatous bryophytes at different relative water contents (RWCs), COS concentrations, temperatures and light intensities. We found large AS in the dark, indicating that CA activity continues without photosynthesis. More surprisingly, we found a nonzero COS compensation point in light and dark conditions, indicating a temperature-driven COS source with a Q10 (fractional change for a 10°C temperature increase) of 3.7. This resulted in greater AS in the dark than in the light at similar RWC. The processes underlying such COS emissions remain unknown. Our results suggest that ecosystems dominated by bryophytes might be strong atmospheric sinks of COS at night and weaker sinks or even sources of COS during daytime. Biotic COS production in bryophytes could result from symbiotic fungal and bacterial partners that could also be found on vascular plants.
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Affiliation(s)
| | - Jérôme Ogée
- ISPABordeaux Science AgroINRAVillenave d'Ornon33140France
| | - Jessica Royles
- Department Plant SciencesUniversity of CambridgeCambridgeCB2 3EAUK
| | - Yves Gibon
- UMR BFP 1332Plateforme Métabolome du Centre de Génomique Fonctionnelle BordeauxPHENOME INRAUniversity of BordeauxVillenave d'Ornon33140France
| | - Jason B. West
- Department of Ecosystem Science & ManagementTexas A&M UniversityCollege StationTX77845USA
| | - Régis Burlett
- UMR BIOGECOINRAUniversity of BordeauxTalence33450France
| | - Sam P. Jones
- ISPABordeaux Science AgroINRAVillenave d'Ornon33140France
| | - Joana Sauze
- ISPABordeaux Science AgroINRAVillenave d'Ornon33140France
| | - Steven Wohl
- ISPABordeaux Science AgroINRAVillenave d'Ornon33140France
| | - Camille Benard
- UMR BFP 1332Plateforme Métabolome du Centre de Génomique Fonctionnelle BordeauxPHENOME INRAUniversity of BordeauxVillenave d'Ornon33140France
| | - Bernard Genty
- CNRS/CEA/Aix‐Marseille UniversityUMR 7265 BVMESaint‐Paul‐lez‐DuranceFrance
| | - Lisa Wingate
- ISPABordeaux Science AgroINRAVillenave d'Ornon33140France
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Ayyappan V, Saha MC, Thimmapuram J, Sripathi VR, Bhide KP, Fiedler E, Hayford RK, Kalavacharla VK. Comparative transcriptome profiling of upland (VS16) and lowland (AP13) ecotypes of switchgrass. PLANT CELL REPORTS 2017; 36:129-150. [PMID: 27812750 PMCID: PMC5206262 DOI: 10.1007/s00299-016-2065-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2016] [Accepted: 10/18/2016] [Indexed: 05/27/2023]
Abstract
KEY MESSAGE Transcriptomes of two switchgrass genotypes representing the upland and lowland ecotypes will be key tools in switchgrass genome annotation and biotic and abiotic stress functional genomics. Switchgrass (Panicum virgatum L.) is an important bioenergy feedstock for cellulosic ethanol production. We report genome-wide transcriptome profiling of two contrasting tetraploid switchgrass genotypes, VS16 and AP13, representing the upland and lowland ecotypes, respectively. A total of 268 million Illumina short reads (50 nt) were generated, of which, 133 million were obtained in AP13 and the rest 135 million in VS16. More than 90% of these reads were mapped to the switchgrass reference genome (V1.1). We identified 6619 and 5369 differentially expressed genes in VS16 and AP13, respectively. Gene ontology and KEGG pathway analysis identified key genes that regulate important pathways including C4 photosynthesis, photorespiration and phenylpropanoid metabolism. A series of genes (33) involved in photosynthetic pathway were up-regulated in AP13 but only two genes showed higher expression in VS16. We identified three dicarboxylate transporter homologs that were highly expressed in AP13. Additionally, genes that mediate drought, heat, and salinity tolerance were also identified. Vesicular transport proteins, syntaxin and signal recognition particles were seen to be up-regulated in VS16. Analyses of selected genes involved in biosynthesis of secondary metabolites, plant-pathogen interaction, membrane transporters, heat, drought and salinity stress responses confirmed significant variation in the relative expression reflected in RNA-Seq data between VS16 and AP13 genotypes. The phenylpropanoid pathway genes identified here are potential targets for biofuel conversion.
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Affiliation(s)
- Vasudevan Ayyappan
- Molecular Genetics and Epigenomics Laboratory, College of Agriculture and Related Sciences, Delaware State University, Dover, DE, USA
| | - Malay C Saha
- Forage Improvement Division, The Samuel Roberts Noble Foundation, Ardmore, OK, USA
| | | | - Venkateswara R Sripathi
- Plant Molecular Biology and Bioinformatics Laboratory, College of Agricultural, Life and Natural Sciences, Alabama A&M University, Normal, AL, USA
| | - Ketaki P Bhide
- Bioinformatics Core, Purdue University, West Lafayette, IN, USA
| | - Elizabeth Fiedler
- Molecular Genetics and Epigenomics Laboratory, College of Agriculture and Related Sciences, Delaware State University, Dover, DE, USA
| | - Rita K Hayford
- Molecular Genetics and Epigenomics Laboratory, College of Agriculture and Related Sciences, Delaware State University, Dover, DE, USA
| | - Venu Kal Kalavacharla
- Molecular Genetics and Epigenomics Laboratory, College of Agriculture and Related Sciences, Delaware State University, Dover, DE, USA.
- Center for Integrated Biological and Environmental Research, Delaware State University, Dover, DE, USA.
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Biological consilience of hydrogen sulfide and nitric oxide in plants: Gases of primordial earth linking plant, microbial and animal physiologies. Nitric Oxide 2016; 55-56:91-100. [DOI: 10.1016/j.niox.2016.04.002] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2016] [Revised: 04/03/2016] [Accepted: 04/11/2016] [Indexed: 12/18/2022]
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Mallik C, Chandra N, Venkataramani S, Lal S. Variability of atmospheric carbonyl sulfide at a semi-arid urban site in western India. THE SCIENCE OF THE TOTAL ENVIRONMENT 2016; 551-552:725-737. [PMID: 26907740 DOI: 10.1016/j.scitotenv.2016.02.014] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2015] [Revised: 02/01/2016] [Accepted: 02/02/2016] [Indexed: 06/05/2023]
Abstract
Atmospheric carbonyl sulfide (COS) is a major precursor for sulfate aerosols that play a critical role in climate regulation. Recent studies have highlighted the importance of COS measurements as a reliable means to constrain biospheric carbon assimilation. In a scenario of limited availability of COS data around the globe, we present gas-chromatographic measurements of atmospheric COS mixing ratios over Ahmedabad, a semi-arid, urban region in western India. These measurements, being reported for the first time over an Indian site, enable us to understand the diurnal and seasonal variation in atmospheric COS with respect to its natural, anthropogenic and photochemical sources and sinks. The annual mean COS mixing ratio over Ahmedabad is found to be 0.83±0.43ppbv, which is substantially higher than free tropospheric values for the northern hemisphere. Inverse correlation of COS with soil and skin temperature, suggests that the dry soil of the semi-arid study region is a potential sink for atmospheric COS. Positive correlations of COS with NO2 and CO during post-monsoon and the COS/CO slope of 0.78pptv/ppbv reveals influence of diesel combustion and tire wear. The highest concentrations of COS are observed during pre-monsoon; COS/CO2 slope of 44.75pptv/ppmv combined with information from air mass back-trajectories reveal marshy wetlands spanning over 7500km(2) as an important source of COS in Ahmedabad. COS/CO2 slopes decrease drastically (8.28pptv/ppmv) during post-monsoon due to combined impact of biospheric uptake and anthropogenic emissions.
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Affiliation(s)
- Chinmay Mallik
- Physical Research Laboratory, Ahmedabad, India; Max Planck Institute for Chemistry, Mainz, Germany.
| | - Naveen Chandra
- Physical Research Laboratory, Ahmedabad, India; Indian Institute of Technology, Gandhinagar, India
| | | | - Shyam Lal
- Physical Research Laboratory, Ahmedabad, India
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Abstract
Carbonyl sulfide (OCS), the most abundant sulfur gas in the atmosphere, has a summer minimum associated with uptake by vegetation and soils, closely correlated with CO2. We report the first direct measurements to our knowledge of the ecosystem flux of OCS throughout an annual cycle, at a mixed temperate forest. The forest took up OCS during most of the growing season with an overall uptake of 1.36 ± 0.01 mol OCS per ha (43.5 ± 0.5 g S per ha, 95% confidence intervals) for the year. Daytime fluxes accounted for 72% of total uptake. Both soils and incompletely closed stomata in the canopy contributed to nighttime fluxes. Unexpected net OCS emission occurred during the warmest weeks in summer. Many requirements necessary to use fluxes of OCS as a simple estimate of photosynthesis were not met because OCS fluxes did not have a constant relationship with photosynthesis throughout an entire day or over the entire year. However, OCS fluxes provide a direct measure of ecosystem-scale stomatal conductance and mesophyll function, without relying on measures of soil evaporation or leaf temperature, and reveal previously unseen heterogeneity of forest canopy processes. Observations of OCS flux provide powerful, independent means to test and refine land surface and carbon cycle models at the ecosystem scale.
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Peng HY, Qi YP, Lee J, Yang LT, Guo P, Jiang HX, Chen LS. Proteomic analysis of Citrus sinensis roots and leaves in response to long-term magnesium-deficiency. BMC Genomics 2015; 16:253. [PMID: 25887480 PMCID: PMC4383213 DOI: 10.1186/s12864-015-1462-z] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2013] [Accepted: 03/09/2015] [Indexed: 11/12/2022] Open
Abstract
BACKGROUND Magnesium (Mg)-deficiency is frequently observed in Citrus plantations and is responsible for the loss of productivity and poor fruit quality. Knowledge on the effects of Mg-deficiency on upstream targets is scarce. Seedlings of 'Xuegan' [Citrus sinensis (L.) Osbeck] were irrigated with Mg-deficient (0 mM MgSO4) or Mg-sufficient (1 mM MgSO4) nutrient solution for 16 weeks. Thereafter, we first investigated the proteomic responses of C. sinensis roots and leaves to Mg-deficiency using two-dimensional electrophoresis (2-DE) in order to (a) enrich our understanding of the molecular mechanisms of plants to deal with Mg-deficiency and (b) understand the molecular mechanisms by which Mg-deficiency lead to a decrease in photosynthesis. RESULTS Fifty-nine upregulated and 31 downregulated protein spots were isolated in Mg-deficient leaves, while only 19 upregulated and 12 downregulated protein spots in Mg-deficient roots. Many Mg-deficiency-responsive proteins were involved in carbohydrate and energy metabolism, followed by protein metabolism, stress responses, nucleic acid metabolism, cell wall and cytoskeleton metabolism, lipid metabolism and cell transport. The larger changes in leaf proteome versus root one in response to Mg-deficiency was further supported by our observation that total soluble protein concentration was decreased by Mg-deficiency in leaves, but unaffected in roots. Mg-deficiency had decreased levels of proteins [i.e. ribulose-1,5-bisphosphate carboxylase (Rubisco), rubisco activase, oxygen evolving enhancer protein 1, photosynthetic electron transfer-like protein, ferredoxin-NADP reductase (FNR), aldolase] involved in photosynthesis, thus decreasing leaf photosynthesis. To cope with Mg-deficiency, C. sinensis leaves and roots might respond adaptively to Mg-deficiency through: improving leaf respiration and lowering root respiration, but increasing (decreasing) the levels of proteins related to ATP synthase in roots (leaves); enhancing the levels of proteins involved in reactive oxygen species (ROS) scavenging and other stress-responsive proteins; accelerating proteolytic cleavage of proteins by proteases, protein transport and amino acid metabolism; and upregulating the levels of proteins involved in cell wall and cytoskeleton metabolism. CONCLUSIONS Our results demonstrated that proteomics were more affected by long-term Mg-deficiency in leaves than in roots, and that the adaptive responses differed between roots and leaves when exposed to long-term Mg-deficiency. Mg-deficiency decreased the levels of many proteins involved in photosynthesis, thus decreasing leaf photosynthesis.
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Affiliation(s)
- Hao-Yang Peng
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
- Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
| | - Yi-Ping Qi
- Institute of Materia Medica, Fujian Academy of Medical Sciences, Fuzhou, 350001, China.
| | - Jinwook Lee
- Department of Horticultural Science, Kyungpook National University, Daegu, 702-701, ROK.
| | - Lin-Tong Yang
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
- Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
| | - Peng Guo
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
- Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
| | - Huan-Xin Jiang
- College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
- Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
| | - Li-Song Chen
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
- Institute of Horticultural Plant Physiology, Biochemistry, and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
- Fujian Key Laboratory for Plant Molecular and Cell Biology, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
- The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
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Sources and sinks of carbonyl sulfide in an agricultural field in the Southern Great Plains. Proc Natl Acad Sci U S A 2014; 111:9064-9. [PMID: 24927594 DOI: 10.1073/pnas.1319132111] [Citation(s) in RCA: 73] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Net photosynthesis is the largest single flux in the global carbon cycle, but controls over its variability are poorly understood because there is no direct way of measuring it at the ecosystem scale. We report observations of ecosystem carbonyl sulfide (COS) and CO2 fluxes that resolve key gaps in an emerging framework for using concurrent COS and CO2 measurements to quantify terrestrial gross primary productivity. At a wheat field in Oklahoma we found that in the peak growing season the flux-weighted leaf relative uptake of COS and CO2 during photosynthesis was 1.3, at the lower end of values from laboratory studies, and varied systematically with light. Due to nocturnal stomatal conductance, COS uptake by vegetation continued at night, contributing a large fraction (29%) of daily net ecosystem COS fluxes. In comparison, the contribution of soil fluxes was small (1-6%) during the peak growing season. Upland soils are usually considered sinks of COS. In contrast, the well-aerated soil at the site switched from COS uptake to emissions at a soil temperature of around 15 °C. We observed COS production from the roots of wheat and other species and COS uptake by root-free soil up to a soil temperature of around 25 °C. Our dataset demonstrates that vegetation uptake is the dominant ecosystem COS flux in the peak growing season, providing support of COS as an independent tracer of terrestrial photosynthesis. However, the observation that ecosystems may become a COS source at high temperature needs to be considered in global modeling studies.
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Wang M, Zhang Q, Liu FC, Xie WF, Wang GD, Wang J, Gao QH, Duan K. Family-wide expression characterization of Arabidopsis beta-carbonic anhydrase genes using qRT-PCR and Promoter::GUS fusions. Biochimie 2013; 97:219-27. [PMID: 24211190 DOI: 10.1016/j.biochi.2013.10.020] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2013] [Accepted: 10/23/2013] [Indexed: 11/19/2022]
Abstract
Carbonic anhydrases (CAs, EC 4.2.1.1) are metalloenzymes found throughout the phylogenetic tree. The β-class carbonic anhydrases (β-CAs) are the predominating class of CAs in plants. Growing evidence underscores the importance of β-CAs in plant immunity and environmental adaptation in addition to their roles in photosynthesis. However, many fundamental problems in Arabidopsis βCAs expression remain unsolved. Here we examined the transcript abundance of AtβCAs in different tissues of Arabidopsis thaliana, and the accumulation of mRNA in response to CO2 and darkness. Histochemical analysis was performed to study the promoter activity of AtβCAs during post-germination seedling growth and in mature plants. All six members of the AtβCA subfamily showed a response to changed CO2 level and darkness, but each member showed a specific dynamic pattern. Although expression of each AtβCA was unique, in general most AtβCAs were synchronously expressed in green leaves since 5 days after germination until flowering. AtβCA1 and AtβCA2 were most highly expressed in leaves but AtβCA2 displayed weaker expression in roots. The level of AtβCA3 transcripts was highest in flowers, while AtβCA5 was most widely expressed and might be involved in more processes than other members. AtβCA6 was unique for increased expression in darkness and no expression in either the anther or pistil. The present study provides useful information for further functional investigation.
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Affiliation(s)
- Meng Wang
- Forestry and Fruit Tree Research Institute, Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai Academy of Agricultural Sciences (SAAS), Shanghai 201403, China; Biotech Research Institute, SAAS, Shanghai 201106, China; College of Life Sciences, Ningxia University, Yinchuan 750021, China
| | - Qiong Zhang
- Forestry and Fruit Tree Research Institute, Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai Academy of Agricultural Sciences (SAAS), Shanghai 201403, China; Biotech Research Institute, SAAS, Shanghai 201106, China; College of Horticultural Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Fang-Chun Liu
- Forestry and Fruit Tree Research Institute, Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai Academy of Agricultural Sciences (SAAS), Shanghai 201403, China
| | - Wei-Fa Xie
- Forestry and Fruit Tree Research Institute, Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai Academy of Agricultural Sciences (SAAS), Shanghai 201403, China
| | - Guang-Dong Wang
- College of Horticultural Sciences, Nanjing Agricultural University, Nanjing 210095, China
| | - Jun Wang
- College of Life Sciences, Ningxia University, Yinchuan 750021, China
| | - Qing-Hua Gao
- Forestry and Fruit Tree Research Institute, Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai Academy of Agricultural Sciences (SAAS), Shanghai 201403, China.
| | - Ke Duan
- Forestry and Fruit Tree Research Institute, Shanghai Key Laboratory of Protected Horticultural Technology, Shanghai Academy of Agricultural Sciences (SAAS), Shanghai 201403, China; Biotech Research Institute, SAAS, Shanghai 201106, China.
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