1
|
Ayala-Ramos MA, Montaño-Arias SA, Terrazas T, Grether R. Ecological implications of stomatal density and stomatal index in the adult stage of Mimosa L. (Leguminosae, Caesalpinioideae). PROTOPLASMA 2024; 261:477-486. [PMID: 38030853 DOI: 10.1007/s00709-023-01909-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2023] [Accepted: 11/09/2023] [Indexed: 12/01/2023]
Abstract
Differences in stomatal density (SD) and stomatal index (SI) are associated with the conditions of the environment in which they are distributed. Mimosa species are important elements in different plant communities, yet knowledge of the ecological implications of its stomatal characteristics is scarce. For this reason, SD and SI were determined in seven Mimosa species from different environments in this study. Five individuals per species were selected, and a sample of leaflets was obtained from each. Fifteen mature leaflets per individual were then extracted and observed by optical microscopy. SD, SI, epidermal cell density (ECD), and guard cell length (GCL) values were obtained. Differences between species were analyzed through a balanced analysis of variance test, and the correspondence between the stomatal characteristics and 21 climate variables was determined by canonical correspondence analysis. The species differed in all evaluated characteristics. It should be noted that only M. affinis showed differences between the leaflet surfaces. Both DE and ECD were negatively associated with altitude and solar radiation and positively with temperature and precipitation. SI was explained by temperature and seasonality of precipitation, and GCL by temperature oscillation and seasonality of precipitation. The results suggest that the stomatal characteristics of the leaflets confer resistance in the species to alterations in environmental conditions.
Collapse
Affiliation(s)
- Manuel Alberto Ayala-Ramos
- Doctorado en Ciencias Biológicas y de La Salud, Universidad Autónoma Metropolitana, Unidad Iztapalapa, Ciudad de México, México
| | - Susana Adriana Montaño-Arias
- Universidad Autónoma Metropolitana, Unidad-Iztapalapa, Departamento de Biología, División de Ciencias Biológicas y de La Salud, Apdo. Postal 55-535, 09340, Ciudad de Mexico, México.
| | - Teresa Terrazas
- Instituto de Biología, Universidad Nacional Autónoma de México, Ciudad Universitaria, Coyoacán, Ciudad de México, CP, 04510, México
| | - Rosaura Grether
- Universidad Autónoma Metropolitana, Unidad-Iztapalapa, Departamento de Biología, División de Ciencias Biológicas y de La Salud, Apdo. Postal 55-535, 09340, Ciudad de Mexico, México
| |
Collapse
|
2
|
Yoshiyama Y, Wakabayashi Y, Mercer KL, Kawabata S, Kobayashi T, Tabuchi T, Yamori W. Natural genetic variation in dynamic photosynthesis is correlated with stomatal anatomical traits in diverse tomato species across geographical habitats. JOURNAL OF EXPERIMENTAL BOTANY 2024:erae082. [PMID: 38606772 DOI: 10.1093/jxb/erae082] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/20/2023] [Accepted: 02/23/2024] [Indexed: 04/13/2024]
Abstract
Plants grown under field conditions experience fluctuating light. Understanding the natural genetic variations for a similarly dynamic photosynthetic response among untapped germplasm resources, as well as the underlying mechanisms, may offer breeding strategies to improve production using molecular approaches. Here, we measured gas exchange under fluctuating light, along with stomatal density and size, in eight wild tomato species and two tomato cultivars. The photosynthetic induction response showed significant diversity, with some wild species having faster induction rates than the two cultivars. Species with faster photosynthetic induction rates had higher daily integrated photosynthesis, but lower average water use efficiency because of high stomatal conductance under natural fluctuating light. The variation in photosynthetic induction was closely associated with the speed of stomatal responses, highlighting its critical role in maximizing photosynthesis under fluctuating light conditions. Moreover, stomatal size was negatively correlated with stomatal density within a species, and plants with smaller stomata at a higher density had a quicker photosynthetic response than those with larger stomata at lower density. Our findings show that the response of stomatal conductance plays a pivotal role in photosynthetic induction, with smaller stomata at higher density proving advantageous for photosynthesis under fluctuating light in tomato species. The interspecific variation in the rate of stomatal responses could offer an untapped resource for optimizing dynamic photosynthetic responses under field conditions.
Collapse
Affiliation(s)
- Yugo Yoshiyama
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishitokyo, Tokyo, Japan
| | - Yu Wakabayashi
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishitokyo, Tokyo, Japan
| | - Kristin L Mercer
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishitokyo, Tokyo, Japan
- Ohio State University, Department of Horticulture and Crop Science, Columbus, OH, USA
| | - Saneyuki Kawabata
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishitokyo, Tokyo, Japan
| | - Takayuki Kobayashi
- Department of Advanced Food Sciences, College of Agriculture, Tamagawa University, Machida, Tokyo, Japan
| | - Toshihito Tabuchi
- Department of Advanced Food Sciences, College of Agriculture, Tamagawa University, Machida, Tokyo, Japan
| | - Wataru Yamori
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishitokyo, Tokyo, Japan
| |
Collapse
|
3
|
Nguyen TBA, Lefoulon C, Nguyen TH, Blatt MR, Carroll W. Engineering stomata for enhanced carbon capture and water-use efficiency. TRENDS IN PLANT SCIENCE 2023; 28:1290-1309. [PMID: 37423785 DOI: 10.1016/j.tplants.2023.06.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2023] [Revised: 05/29/2023] [Accepted: 06/02/2023] [Indexed: 07/11/2023]
Abstract
Stomatal pores facilitate gaseous exchange between the inner air spaces of the leaf and the atmosphere. As gatekeepers that balance CO2 entry for photosynthesis against transpirational water loss, they are a focal point for efforts to improve crop performance, especially in the efficiency of water use, within the changing global environment. Until recently, engineering strategies had focused on stomatal conductance in the steady state. These strategies are limited by the physical constraints of CO2 and water exchange such that gains in water-use efficiency (WUE) commonly come at a cost in carbon assimilation. Attention to stomatal speed and responsiveness circumvents these constraints and offers alternatives to enhancing WUE that also promise increases in carbon assimilation in the field.
Collapse
Affiliation(s)
- Thu Binh-Anh Nguyen
- Laboratory of Plant Physiology and Biophysics, Bower Building, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Cecile Lefoulon
- Laboratory of Plant Physiology and Biophysics, Bower Building, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Thanh-Hao Nguyen
- Laboratory of Plant Physiology and Biophysics, Bower Building, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Michael R Blatt
- Laboratory of Plant Physiology and Biophysics, Bower Building, University of Glasgow, Glasgow, G12 8QQ, UK.
| | - William Carroll
- Laboratory of Plant Physiology and Biophysics, Bower Building, University of Glasgow, Glasgow, G12 8QQ, UK
| |
Collapse
|
4
|
Rathnasamy SA, Kambale R, Elangovan A, Mohanavel W, Shanmugavel P, Ramasamy G, Alagarsamy S, Marimuthu R, Rajagopalan VR, Manickam S, Ramanathan V, Muthurajan R, Vellingiri G. Altering Stomatal Density for Manipulating Transpiration and Photosynthetic Traits in Rice through CRISPR/Cas9 Mutagenesis. Curr Issues Mol Biol 2023; 45:3801-3814. [PMID: 37232714 DOI: 10.3390/cimb45050245] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/27/2022] [Revised: 02/12/2023] [Accepted: 02/28/2023] [Indexed: 05/27/2023] Open
Abstract
Stomata regulates conductance, transpiration and photosynthetic traits in plants. Increased stomatal density may contribute to enhanced water loss and thereby help improve the transpirational cooling process and mitigate the high temperature-induced yield losses. However, genetic manipulation of stomatal traits through conventional breeding still remains a challenge due to problems involved in phenotyping and the lack of suitable genetic materials. Recent advances in functional genomics in rice identified major effect genes determining stomatal traits, including its number and size. Widespread applications of CRISPR/Cas9 in creating targeted mutations paved the way for fine tuning the stomatal traits for enhancing climate resilience in crops. In the current study, attempts were made to create novel alleles of OsEPF1 (Epidermal Patterning Factor), a negative regulator of stomatal frequency/density in a popular rice variety, ASD 16, using the CRISPR/Cas9 approach. Evaluation of 17 T0 progenies identified varying mutations (seven multiallelic, seven biallelic and three monoallelic mutations). T0 mutant lines showed a 3.7-44.3% increase in the stomatal density, and all the mutations were successfully inherited into the T1 generation. Evaluation of T1 progenies through sequencing identified three homozygous mutants for one bp insertion. Overall, T1 plants showed 54-95% increased stomatal density. The homozygous T1 lines (# E1-1-4, # E1-1-9 and # E1-1-11) showed significant increase in the stomatal conductance (60-65%), photosynthetic rate (14-31%) and the transpiration rate (58-62%) compared to the nontransgenic ASD 16. Results demonstrated that the genetic alterations in OsEPF1 altered the stomatal density, stomatal conductance and photosynthetic efficiency in rice. Further experiments are needed to associate this technology with canopy cooling and high temperature tolerance.
Collapse
Affiliation(s)
- Sakthi Ambothi Rathnasamy
- Department of Plant Biotechnology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - Rohit Kambale
- Department of Plant Biotechnology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - Allimuthu Elangovan
- Department of Plant Biotechnology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - Williams Mohanavel
- Department of Plant Biotechnology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - Priyanka Shanmugavel
- Agro-Climatology Research Centre, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - Gowtham Ramasamy
- Agro-Climatology Research Centre, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - Senthil Alagarsamy
- Department of Crop Physiology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - Rajavel Marimuthu
- Department of Crop Physiology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - Veera Ranjani Rajagopalan
- Department of Plant Biotechnology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - Sudha Manickam
- Department of Plant Biotechnology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | | | - Raveendran Muthurajan
- Department of Plant Biotechnology, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| | - Geethalakshmi Vellingiri
- Agro-Climatology Research Centre, Tamil Nadu Agricultural University, Coimbatore 641 003, Tamil Nadu, India
| |
Collapse
|
5
|
Conserved signalling components coordinate epidermal patterning and cuticle deposition in barley. Nat Commun 2022; 13:6050. [PMID: 36229435 PMCID: PMC9561702 DOI: 10.1038/s41467-022-33300-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Accepted: 09/12/2022] [Indexed: 12/24/2022] Open
Abstract
Faced with terrestrial threats, land plants seal their aerial surfaces with a lipid-rich cuticle. To breathe, plants interrupt their cuticles with adjustable epidermal pores, called stomata, that regulate gas exchange, and develop other specialised epidermal cells such as defensive hairs. Mechanisms coordinating epidermal features remain poorly understood. Addressing this, we studied two loci whose allelic variation causes both cuticular wax-deficiency and misarranged stomata in barley, identifying the underlying genes, Cer-g/ HvYDA1, encoding a YODA-like (YDA) MAPKKK, and Cer-s/ HvBRX-Solo, encoding a single BREVIS-RADIX (BRX) domain protein. Both genes control cuticular integrity, the spacing and identity of epidermal cells, and barley's distinctive epicuticular wax blooms, as well as stomatal patterning in elevated CO2 conditions. Genetic analyses revealed epistatic and modifying relationships between HvYDA1 and HvBRX-Solo, intimating that their products participate in interacting pathway(s) linking epidermal patterning with cuticular properties in barley. This may represent a mechanism for coordinating multiple adaptive features of the land plant epidermis in a cultivated cereal.
Collapse
|
6
|
Tsai M, Kuan C, Guo Z, Yang H, Chung K, Ho CK. Stomatal clustering in Begonia improves water use efficiency by modulating stomatal movement and leaf structure. PLANT-ENVIRONMENT INTERACTIONS (HOBOKEN, N.J.) 2022; 3:141-154. [PMID: 37283607 PMCID: PMC10168073 DOI: 10.1002/pei3.10086] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 06/17/2022] [Accepted: 06/20/2022] [Indexed: 06/08/2023]
Abstract
Stomata are a pivotal adaptation of land plants and control gas exchange. While most plants present solitary stomata, some plant species experiencing chronic water deficiency display clustered stomata on their epidermis; for instance, limestone-grown begonias. Moreover, the membrane receptor TOO MANY MOUTHS (TMM) plays a major role in spacing stomata on the epidermis in Arabidopsis, but the function of its Begonia orthologs is unknown. We used two Asian begonias, Begonia formosana (single stomata) and B. hernandioides (clustered stomata), to explore the physiological function of stomatal clustering. We also introduced the Begonia TMMs into Arabidopsis tmm mutants to study the function of Begonia TMMs. B. hernandioides showed higher water use efficiency under high light intensity, smaller stomata, and faster pore opening than B. formosana. The short distance between stomata in a cluster may facilitate cell-to-cell interactions to achieve synchronicity in stomatal movement. Begonia TMMs function similarly to Arabidopsis TMM to inhibit stomatal formation, although complementation by TMM from the clustered species was only partial. Stomatal clustering in begonias may represent a developmental strategy to build small and closer stomata to achieve fast responses to light which provides tight support between stomatal development and environmental adaption.
Collapse
Affiliation(s)
- Meng‐Ying Tsai
- Institute of Plant and Microbial BiologyAcademia SinicaTaipeiTaiwan
- Research Museum and Herbarium (HAST)Biodiversity Research Center, Academia SinicaTaipeiTaiwan
| | - Chi Kuan
- Institute of Plant and Microbial BiologyAcademia SinicaTaipeiTaiwan
| | - Zheng‐Lin Guo
- Institute of Plant and Microbial BiologyAcademia SinicaTaipeiTaiwan
| | - Hsun‐An Yang
- Research Museum and Herbarium (HAST)Biodiversity Research Center, Academia SinicaTaipeiTaiwan
| | - Kuo‐Fang Chung
- Research Museum and Herbarium (HAST)Biodiversity Research Center, Academia SinicaTaipeiTaiwan
| | | |
Collapse
|
7
|
Sakoda K, Adachi S, Yamori W, Tanaka Y. Towards improved dynamic photosynthesis in C3 crops by utilizing natural genetic variation. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:3109-3121. [PMID: 35298629 DOI: 10.1093/jxb/erac100] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2021] [Accepted: 03/09/2022] [Indexed: 06/14/2023]
Abstract
Under field environments, fluctuating light conditions induce dynamic photosynthesis, which affects carbon gain by crop plants. Elucidating the natural genetic variations among untapped germplasm resources and their underlying mechanisms can provide an effective strategy to improve dynamic photosynthesis and, ultimately, improve crop yields through molecular breeding approaches. In this review, we first overview two processes affecting dynamic photosynthesis, namely (i) biochemical processes associated with CO2 fixation and photoprotection and (ii) gas diffusion processes from the atmosphere to the chloroplast stroma. Next, we review the intra- and interspecific variations in dynamic photosynthesis in relation to each of these two processes. It is suggested that plant adaptations to different hydrological environments underlie natural genetic variation explained by gas diffusion through stomata. This emphasizes the importance of the coordination of photosynthetic and stomatal dynamics to optimize the balance between carbon gain and water use efficiency under field environments. Finally, we discuss future challenges in improving dynamic photosynthesis by utilizing natural genetic variation. The forward genetic approach supported by high-throughput phenotyping should be introduced to evaluate the effects of genetic and environmental factors and their interactions on the natural variation in dynamic photosynthesis.
Collapse
Affiliation(s)
- Kazuma Sakoda
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Midori-cho, Nishitokyo, Tokyo 188-0002, Japan
- Japan Society for the Promotion of Science, Japan
| | - Shunsuke Adachi
- Graduate School of Agriculture, Tokyo University of Agriculture and Technology, 3-5-8, Saiwai-cho, Fuchu, Tokyo 183-8509, Japan
| | - Wataru Yamori
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Midori-cho, Nishitokyo, Tokyo 188-0002, Japan
| | - Yu Tanaka
- Graduate School of Agriculture, Kyoto University, Kitashirakawa Oiwake-cho, Sakyo-ku, Kyoto 606-8502, Japan
| |
Collapse
|
8
|
Long SP, Taylor SH, Burgess SJ, Carmo-Silva E, Lawson T, De Souza AP, Leonelli L, Wang Y. Into the Shadows and Back into Sunlight: Photosynthesis in Fluctuating Light. ANNUAL REVIEW OF PLANT BIOLOGY 2022; 73:617-648. [PMID: 35595290 DOI: 10.1146/annurev-arplant-070221-024745] [Citation(s) in RCA: 48] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Photosynthesis is an important remaining opportunity for further improvement in the genetic yield potential of our major crops. Measurement, analysis, and improvement of leaf CO2 assimilation (A) have focused largely on photosynthetic rates under light-saturated steady-state conditions. However, in modern crop canopies of several leaf layers, light is rarely constant, and the majority of leaves experience marked light fluctuations throughout the day. It takes several minutes for photosynthesis to regain efficiency in both sun-shade and shade-sun transitions, costing a calculated 10-40% of potential crop CO2 assimilation. Transgenic manipulations to accelerate the adjustment in sun-shade transitions have already shown a substantial productivity increase in field trials. Here, we explore means to further accelerate these adjustments and minimize these losses through transgenic manipulation, gene editing, and exploitation of natural variation. Measurement andanalysis of photosynthesis in sun-shade and shade-sun transitions are explained. Factors limiting speeds of adjustment and how they could be modified to effect improved efficiency are reviewed, specifically nonphotochemical quenching (NPQ), Rubisco activation, and stomatal responses.
Collapse
Affiliation(s)
- Stephen P Long
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA;
- Departments of Plant Biology and Crop Sciences, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
- Lancaster Environment Centre, Lancaster University, Lancaster, United Kingdom
| | - Samuel H Taylor
- Lancaster Environment Centre, Lancaster University, Lancaster, United Kingdom
| | - Steven J Burgess
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA;
| | | | - Tracy Lawson
- School of Life Sciences, University of Essex, Colchester, United Kingdom
| | - Amanda P De Souza
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA;
| | - Lauriebeth Leonelli
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA;
- Department of Agricultural and Biological Engineering, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA
| | - Yu Wang
- Carl R. Woese Institute for Genomic Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois, USA;
| |
Collapse
|
9
|
Israel WK, Watson-Lazowski A, Chen ZH, Ghannoum O. High intrinsic water use efficiency is underpinned by high stomatal aperture and guard cell potassium flux in C3 and C4 grasses grown at glacial CO2 and low light. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:1546-1565. [PMID: 34718533 DOI: 10.1093/jxb/erab477] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/03/2021] [Accepted: 10/26/2021] [Indexed: 05/15/2023]
Abstract
We compared how stomatal morphology and physiology control intrinsic leaf water use efficiency (iWUE) in two C3 and six C4 grasses grown at ambient (400 µmol mol-1) or glacial CO2 (180 µmol mol-1) and high (1000 µmol m-2 s-1) or low light intensity (200 µmol m-2 s-1). C4 grasses tended to have higher iWUE and CO2 assimilation rates, and lower stomatal conductance (gs), operational stomatal aperture (aop), and guard cell K+ influx rate relative to C3 grasses, while stomatal size (SS) and stomatal density (SD) did not vary according to the photosynthetic type. Overall, iWUE and gs depended most on aop and density of open stomata. In turn, aop correlated with K+ influx, stomatal opening speed on transition to high light, and SS. Species with higher SD had smaller and faster-opening stomata. Although C4 grasses operated with lower gs and aop at ambient CO2, they showed a greater potential to open stomata relative to maximal stomatal conductance (gmax), indicating heightened stomatal sensitivity and control. We uncovered promising links between aop, gs, iWUE, and K+ influx among C4 grasses, and differential K+ influx responses of C4 guard cells to low light, revealing molecular targets for improving iWUE in C4 crops.
Collapse
Affiliation(s)
- Walter Krystler Israel
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Australia
| | - Alexander Watson-Lazowski
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Australia
| | - Zhong-Hua Chen
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
- School of Science, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
| | - Oula Ghannoum
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW 2751, Australia
- ARC Centre of Excellence for Translational Photosynthesis, Australia
| |
Collapse
|
10
|
Sultana SN, Park H, Choi SH, Jo H, Song JT, Lee JD, Kang YJ. Optimizing the Experimental Method for Stomata-Profiling Automation of Soybean Leaves Based on Deep Learning. PLANTS (BASEL, SWITZERLAND) 2021; 10:2714. [PMID: 34961184 PMCID: PMC8708663 DOI: 10.3390/plants10122714] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/03/2021] [Revised: 11/30/2021] [Accepted: 12/07/2021] [Indexed: 11/16/2022]
Abstract
Stomatal observation and automatic stomatal detection are useful analyses of stomata for taxonomic, biological, physiological, and eco-physiological studies. We present a new clearing method for improved microscopic imaging of stomata in soybean followed by automated stomatal detection by deep learning. We tested eight clearing agent formulations based upon different ethanol and sodium hypochlorite (NaOCl) concentrations in order to improve the transparency in leaves. An optimal formulation-a 1:1 (v/v) mixture of 95% ethanol and NaOCl (6-14%)-produced better quality images of soybean stomata. Additionally, we evaluated fixatives and dehydrating agents and selected absolute ethanol for both fixation and dehydration. This is a good substitute for formaldehyde, which is more toxic to handle. Using imaging data from this clearing method, we developed an automatic stomatal detector using deep learning and improved a deep-learning algorithm that automatically analyzes stomata through an object detection model using YOLO. The YOLO deep-learning model successfully recognized stomata with high mAP (~0.99). A web-based interface is provided to apply the model of stomatal detection for any soybean data that makes use of the new clearing protocol.
Collapse
Affiliation(s)
- Syada Nizer Sultana
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.N.S.); (H.J.); (J.T.S.)
| | - Halim Park
- Division of Bio & Medical Big Data Department (BK4 Program), Gyeongsang National University, Jinju 52828, Korea; (H.P.); (S.H.C.)
| | - Sung Hoon Choi
- Division of Bio & Medical Big Data Department (BK4 Program), Gyeongsang National University, Jinju 52828, Korea; (H.P.); (S.H.C.)
| | - Hyun Jo
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.N.S.); (H.J.); (J.T.S.)
| | - Jong Tae Song
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.N.S.); (H.J.); (J.T.S.)
| | - Jeong-Dong Lee
- Department of Applied Biosciences, Kyungpook National University, Daegu 41566, Korea; (S.N.S.); (H.J.); (J.T.S.)
- Department of Integrative Biology, Kyungpook National University, Daegu 41566, Korea
| | - Yang Jae Kang
- Division of Bio & Medical Big Data Department (BK4 Program), Gyeongsang National University, Jinju 52828, Korea; (H.P.); (S.H.C.)
- Division of Life Science Department, Gyeongsang National University, Jinju 52828, Korea
| |
Collapse
|
11
|
Shi P, Jiao Y, Diggle PJ, Turner R, Wang R, Niinemets Ü. Spatial distribution characteristics of stomata at the areole level in Michelia cavaleriei var. platypetala (Magnoliaceae). ANNALS OF BOTANY 2021; 128:875-886. [PMID: 34397092 PMCID: PMC8577203 DOI: 10.1093/aob/mcab106] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/14/2021] [Accepted: 08/13/2021] [Indexed: 05/21/2023]
Abstract
BACKGROUND AND AIMS In hierarchically reticulate venation patterns, smaller orders of veins form areoles in which stomata are located. This study aimed to quantify the spatial relationship among stomata at the areole level. METHODS For each of 12 leaves of M. cavaleriei var. platypetala, we assumed that stomatal characteristics were symmetrical on either side of the midrib, and divided the leaf surface on one side of the midrib into six layers equidistantly spaced along the apical-basal axis. We then further divided each layer into three positions equidistantly spaced from midrib to leaf margin, resulting in a total of 18 sampling locations. In addition, for 60 leaves, we sampled three positions from midrib to margin within only the widest layer of the leaf. Stomatal density and mean nearest neighbour distance (MNND) were calculated for each section. A replicated spatial point pattern approach quantified stomatal spatial relationships at different distances (0-300 μm). KEY RESULTS A tendency towards regular arrangement (inhibition as opposed to attraction or clustering) was observed between stomatal centres at distances <100 μm. Leaf layer (leaf length dimension) had no significant effect on local stomatal density, MNND or the spatial distribution characteristics of stomatal centres. In addition, we did not find greater inhibition at the centre of areoles, and in positions farther from the midrib. CONCLUSIONS Spatial inhibition might be caused by the one-cell-spacing rule, resulting in more regular arrangement of stomata, and it was found to exist at distances up to ~100 μm. This work implies that leaf hydraulic architecture, consisting of both vascular and mesophyll properties, is sufficient to prevent important spatial variability in water supply at the areole level.
Collapse
Affiliation(s)
- Peijian Shi
- College of Biology and the Environment, Bamboo Research Institute, Nanjing Forestry University, Nanjing, China
| | - Yabing Jiao
- College of Biology and the Environment, Bamboo Research Institute, Nanjing Forestry University, Nanjing, China
| | - Peter J Diggle
- Lancaster Medical School, Lancaster University, Lancaster, UK
| | - Rolf Turner
- Department of Statistics, The University of Auckland, New Zealand
| | - Rong Wang
- College of Biology and the Environment, Bamboo Research Institute, Nanjing Forestry University, Nanjing, China
| | - Ülo Niinemets
- Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Tartu, Estonia
- Estonian Academy of Sciences, Tallinn, Estonia
| |
Collapse
|
12
|
Li B, Zeng Y, Cao W, Zhang W, Cheng L, Yin H, Wu Q, Wang X, Huang Y, Lau WCY, Yao ZP, Guo Y, Jiang L. A distinct giant coat protein complex II vesicle population in Arabidopsis thaliana. NATURE PLANTS 2021; 7:1335-1346. [PMID: 34621047 DOI: 10.1038/s41477-021-00997-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2019] [Accepted: 07/29/2021] [Indexed: 05/20/2023]
Abstract
Plants live as sessile organisms with large-scale gene duplication events and subsequent paralogue divergence during evolution. Notably, plant paralogues are expressed tissue-specifically and fine-tuned by phytohormones during various developmental processes. The coat protein complex II (COPII) is a highly conserved vesiculation machinery mediating protein transport from the endoplasmic reticulum to the Golgi apparatus in eukaryotes1. Intriguingly, Arabidopsis COPII paralogues greatly outnumber those in yeast and mammals2-6. However, the functional diversity and underlying mechanism of distinct COPII paralogues in regulating protein endoplasmic reticulum export and coping with various adverse environmental stresses are poorly understood. Here we characterize a novel population of COPII vesicles produced in response to abscisic acid, a key phytohormone regulating abiotic stress responses in plants. These hormone-induced giant COPII vesicles are regulated by an Arabidopsis-specific COPII paralogue and carry stress-related channels/transporters for alleviating stresses. This study thus provides a new mechanism underlying abscisic acid-induced stress responses via the giant COPII vesicles and answers a long-standing question on the evolutionary significance of gene duplications in Arabidopsis.
Collapse
Affiliation(s)
- Baiying Li
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
| | - Yonglun Zeng
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
| | - Wenhan Cao
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
| | - Wenxin Zhang
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
| | - Lixin Cheng
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
- Department of Critical Care Medicine, Shenzhen People's Hospital, The Second Clinical Medicine College of Ji'nan University, Shenzhen, China
| | - Haidi Yin
- State Key Laboratory of Chemical Biology and Drug Discovery and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hong Kong, China
| | - Qian Wu
- State Key Laboratory of Chemical Biology and Drug Discovery and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hong Kong, China
| | - Xiangfeng Wang
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
- State Key Laboratory of Plant Physiology and Biochemistry, Department of Plant Sciences, College of Biological Sciences, China Agricultural University, Beijing, China
| | - Yan Huang
- Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China
| | - Wilson Chun Yu Lau
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China
| | - Zhong-Ping Yao
- State Key Laboratory of Chemical Biology and Drug Discovery and Department of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hong Kong, China
| | - Yusong Guo
- Division of Life Science, Hong Kong University of Science and Technology, Hong Kong, China.
| | - Liwen Jiang
- School of Life Sciences, Centre for Cell & Developmental Biology and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong, China.
- CUHK Shenzhen Research Institute, The Chinese University of Hong Kong, Shenzhen, China.
- Institute of Plant Molecular Biology and Agricultural Biotechnology, The Chinese University of Hong Kong, Hong Kong, China.
| |
Collapse
|
13
|
SPEECHLESS and MUTE Mediate Feedback Regulation of Signal Transduction during Stomatal Development. PLANTS 2021; 10:plants10030432. [PMID: 33668323 PMCID: PMC7996297 DOI: 10.3390/plants10030432] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Revised: 02/14/2021] [Accepted: 02/21/2021] [Indexed: 01/01/2023]
Abstract
Stomatal density, spacing, and patterning greatly influence the efficiency of gas exchange, photosynthesis, and water economy. They are regulated by a complex of extracellular and intracellular factors through the signaling pathways. After binding the extracellular epidermal patterning factor 1 (EPF1) and 2 (EPF2) as ligands, the receptor-ligand complexes activate by phosphorylation through the MAP-kinase cascades, regulating basic helix-loop-helix (bHLH) transcription factors SPEECHLESS (SPCH), MUTE, and FAMA. In this review, we summarize the molecular mechanisms and signal transduction pathways running within the transition of the protodermal cell into a pair of guard cells with a space (aperture) between them, called a stoma, comprising asymmetric and symmetric cell divisions and draw several functional models. The feedback mechanisms involving the bHLH factors SPCH and MUTE are not fully recognized yet. We show the feedback mechanisms driven by SPCH and MUTE in the regulation of EPF2 and the ERECTA family. Intersections of the molecular mechanisms for fate determination of stomatal lineage cells with the role of core cell cycle-related genes and stabilization of SPCH and MUTE are also reported.
Collapse
|
14
|
Zhao Z, Zhang JW, Lu SH, Zhang H, Liu F, Fu B, Zhao MQ, Liu H. Transcriptome divergence between developmental senescence and premature senescence in Nicotiana tabacum L. Sci Rep 2020; 10:20556. [PMID: 33239739 PMCID: PMC7688636 DOI: 10.1038/s41598-020-77395-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2020] [Accepted: 11/05/2020] [Indexed: 12/02/2022] Open
Abstract
Senescence is a degenerative process triggered by intricate and coordinated regulatory networks, and the mechanisms of age-dependent senescence and stress-induced premature senescence still remain largely elusive. Thus we selected leaf samples of developmental senescence (DS) and premature senescence (PS) to reveal the regulatory divergence. Senescent leaves were confirmed by yellowing symptom and physiological measurement. A total of 1171 and 309 genes (DEGs) were significantly expressed respectively in the whole process of DS and PS. Up-regulated DEGs in PS were mostly related to ion transport, while the down-regulated DEGs were mainly associated with oxidoreductase activity and sesquiterpenoid and triterpenoid biosynthesis. In DS, photosynthesis, precursor metabolites and energy, protein processing in endoplasmic reticulum, flavonoid biosynthesis were notable. Moreover, we found the vital pathways shared by DS and PS, of which the DEGs were analyzed further via protein-protein interaction (PPI) network analysis to explore the alteration responding to two types of senescence. In addition, plant hormone transduction pathway was mapped by related DEGs, suggesting that ABA and ethylene signaling played pivotal roles in formulating the distinction of DS and PS. Finally, we conducted a model containing oxidative stress and ABA signaling as two hub points, which highlighted the major difference and predicted the possible mechanism under DS and PS. This work gained new insight into molecular divergence of developmental senescence and premature senescence and would provide reference on potential mechanism initiating and motivating senescence for further study.
Collapse
Affiliation(s)
- Zhe Zhao
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, People's Republic of China
| | - Jia-Wen Zhang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, People's Republic of China
| | - Shao-Hao Lu
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, People's Republic of China
| | - Hong Zhang
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, People's Republic of China
| | - Fang Liu
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, People's Republic of China
| | - Bo Fu
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, People's Republic of China
| | - Ming-Qin Zhao
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, People's Republic of China.
| | - Hui Liu
- College of Tobacco Science, Henan Agricultural University, Zhengzhou, 450002, People's Republic of China
| |
Collapse
|
15
|
Sakoda K, Yamori W, Shimada T, Sugano SS, Hara-Nishimura I, Tanaka Y. Higher Stomatal Density Improves Photosynthetic Induction and Biomass Production in Arabidopsis Under Fluctuating Light. FRONTIERS IN PLANT SCIENCE 2020; 11:589603. [PMID: 33193542 PMCID: PMC7641607 DOI: 10.3389/fpls.2020.589603] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2020] [Accepted: 09/29/2020] [Indexed: 05/02/2023]
Abstract
Stomatal density (SD) is closely associated with photosynthetic and growth characteristics in plants. In the field, light intensity can fluctuate drastically within a day. The objective of the present study is to examine how higher SD affects stomatal conductance (g s ) and CO2 assimilation rate (A) dynamics, biomass production and water use under fluctuating light. Here, we compared the photosynthetic and growth characteristics under constant and fluctuating light among three lines of Arabidopsis thaliana (L.): the wild type (WT), STOMAGEN/EPFL9-overexpressing line (ST-OX), and EPIDERMAL PATTERNING FACTOR 1 knockout line (epf1). ST-OX and epf1 showed 268.1 and 46.5% higher SD than WT (p < 0.05). Guard cell length of ST-OX was 10.0% lower than that of WT (p < 0.01). There were no significant variations in gas exchange parameters at steady state between WT and ST-OX or epf1, although these parameters tended to be higher in ST-OX and epf1 than WT. On the other hand, ST-OX and epf1 showed faster A induction than WT after step increase in light owing to the higher g s under initial dark condition. In addition, ST-OX and epf1 showed initially faster g s induction and, at the later phase, slower g s induction. Cumulative CO2 assimilation in ST-OX and epf1 was 57.6 and 78.8% higher than WT attributable to faster A induction with reduction of water use efficiency (WUE). epf1 yielded 25.6% higher biomass than WT under fluctuating light (p < 0.01). In the present study, higher SD resulted in faster photosynthetic induction owing to the higher initial g s . epf1, with a moderate increase in SD, achieved greater biomass production than WT under fluctuating light. These results suggest that higher SD can be beneficial to improve biomass production in plants under fluctuating light conditions.
Collapse
Affiliation(s)
- Kazuma Sakoda
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishitokyo, Japan
- Japan Society for the Promotion of Science, Tokyo, Japan
| | - Wataru Yamori
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Nishitokyo, Japan
| | - Tomoo Shimada
- Graduate School of Science, Kyoto University, Kyoto, Japan
| | - Shigeo S. Sugano
- National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
| | | | - Yu Tanaka
- Graduate School of Agriculture, Kyoto University, Kyoto, Japan
- JST, PRESTO, Kyoto, Japan
| |
Collapse
|
16
|
Harrison EL, Arce Cubas L, Gray JE, Hepworth C. The influence of stomatal morphology and distribution on photosynthetic gas exchange. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 101:768-779. [PMID: 31583771 PMCID: PMC7065165 DOI: 10.1111/tpj.14560] [Citation(s) in RCA: 78] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Revised: 09/25/2019] [Accepted: 10/03/2019] [Indexed: 05/18/2023]
Abstract
The intricate and interconnecting reactions of C3 photosynthesis are often limited by one of two fundamental processes: the conversion of solar energy into chemical energy, or the diffusion of CO2 from the atmosphere through the stomata, and ultimately into the chloroplast. In this review, we explore how the contributions of stomatal morphology and distribution can affect photosynthesis, through changes in gaseous exchange. The factors driving this relationship are considered, and recent results from studies investigating the effects of stomatal shape, size, density and patterning on photosynthesis are discussed. We suggest that the interplay between stomatal gaseous exchange and photosynthesis is complex, and that a disconnect often exists between the rates of CO2 diffusion and photosynthetic carbon fixation. The mechanisms that allow for substantial reductions in maximum stomatal conductance without affecting photosynthesis are highly dependent on environmental factors, such as light intensity, and could be exploited to improve crop performance.
Collapse
Affiliation(s)
- Emily L. Harrison
- Department of Molecular Biology and BiotechnologyUniversity of Sheffield, Western BankSheffieldUK
| | - Lucia Arce Cubas
- Department of Molecular Biology and BiotechnologyUniversity of Sheffield, Western BankSheffieldUK
| | - Julie E. Gray
- Department of Molecular Biology and BiotechnologyUniversity of Sheffield, Western BankSheffieldUK
| | - Christopher Hepworth
- Department of Molecular Biology and BiotechnologyUniversity of Sheffield, Western BankSheffieldUK
| |
Collapse
|
17
|
Papanatsiou M, Petersen J, Henderson L, Wang Y, Christie JM, Blatt MR. Optogenetic manipulation of stomatal kinetics improves carbon assimilation, water use, and growth. Science 2019; 363:1456-1459. [PMID: 30923223 DOI: 10.1126/science.aaw0046] [Citation(s) in RCA: 159] [Impact Index Per Article: 31.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2018] [Accepted: 02/27/2019] [Indexed: 01/02/2023]
Abstract
Stomata serve dual and often conflicting roles, facilitating carbon dioxide influx into the plant leaf for photosynthesis and restricting water efflux via transpiration. Strategies for reducing transpiration without incurring a cost for photosynthesis must circumvent this inherent coupling of carbon dioxide and water vapor diffusion. We expressed the synthetic, light-gated K+ channel BLINK1 in guard cells surrounding stomatal pores in Arabidopsis to enhance the solute fluxes that drive stomatal aperture. BLINK1 introduced a K+ conductance and accelerated both stomatal opening under light exposure and closing after irradiation. Integrated over the growth period, BLINK1 drove a 2.2-fold increase in biomass in fluctuating light without cost in water use by the plant. Thus, we demonstrate the potential of enhancing stomatal kinetics to improve water use efficiency without penalty in carbon fixation.
Collapse
Affiliation(s)
- M Papanatsiou
- Laboratory of Plant Physiology and Biophysics, Institute of Molecular, Cell and Systems Biology, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK.,Plant Science Group, Institute of Molecular, Cell and Systems Biology, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK
| | - J Petersen
- Plant Science Group, Institute of Molecular, Cell and Systems Biology, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK
| | - L Henderson
- Plant Science Group, Institute of Molecular, Cell and Systems Biology, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK
| | - Y Wang
- Laboratory of Plant Physiology and Biophysics, Institute of Molecular, Cell and Systems Biology, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK.,Institute of Crop Science, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China
| | - J M Christie
- Plant Science Group, Institute of Molecular, Cell and Systems Biology, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK.
| | - M R Blatt
- Laboratory of Plant Physiology and Biophysics, Institute of Molecular, Cell and Systems Biology, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK. .,Plant Science Group, Institute of Molecular, Cell and Systems Biology, University of Glasgow, University Avenue, Glasgow G12 8QQ, UK.,Institute of Crop Science, College of Agriculture and Biotechnology, Zijingang Campus, Zhejiang University, Hangzhou 310058, China
| |
Collapse
|
18
|
Cerutti A, Jauneau A, Laufs P, Leonhardt N, Schattat MH, Berthomé R, Routaboul JM, Noël LD. Mangroves in the Leaves: Anatomy, Physiology, and Immunity of Epithemal Hydathodes. ANNUAL REVIEW OF PHYTOPATHOLOGY 2019; 57:91-116. [PMID: 31100996 DOI: 10.1146/annurev-phyto-082718-100228] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Hydathodes are organs found on aerial parts of a wide range of plant species that provide almost direct access for several pathogenic microbes to the plant vascular system. Hydathodes are better known as the site of guttation, which is the release of droplets of plant apoplastic fluid to the outer leaf surface. Because these organs are only described through sporadic allusions in the literature, this review aims to provide a comprehensive view of hydathode development, physiology, and immunity by compiling a historic and contemporary bibliography. In particular, we refine the definition of hydathodes.We illustrate their important roles in the maintenance of plant osmotic balance, nutrient retrieval, and exclusion of deleterious chemicals from the xylem sap. Finally, we present our current understanding of the infection of hydathodes by adapted vascular pathogens and the associated plant immune responses.
Collapse
Affiliation(s)
- Aude Cerutti
- LIPM, Université de Toulouse, INRA and CNRS and Université Paul Sabatier, F-31326 Castanet-Tolosan, France;
| | - Alain Jauneau
- Plateforme Imagerie, Institut Fédératif de Recherche 3450, Pôle de Biotechnologie Végétale, F-31326 Castanet-Tolosan, France
| | - Patrick Laufs
- Institut Jean-Pierre Bourgin, INRA and AgroParisTech and CNRS, Université Paris-Saclay, F-78000 Versailles, France
| | - Nathalie Leonhardt
- Laboratoire de Biologie du Développement des Plantes, Institut de Biosciences et Biotechnologies d'Aix-Marseille, Aix-Marseille Université and Commissariat à l'Energie Atomique et aux Energies Alternatives and CNRS, UMR 7265, F-13108 Saint Paul-Les-Durance, France
| | - Martin H Schattat
- Department of Plant Physiology, Institute for Biology, Martin-Luther-University Halle-Wittenberg, D-06120 Halle (Saale), Germany
| | - Richard Berthomé
- LIPM, Université de Toulouse and INRA and CNRS, F-31326 Castanet-Tolosan, France;
| | - Jean-Marc Routaboul
- LIPM, Université de Toulouse and INRA and CNRS, F-31326 Castanet-Tolosan, France;
| | - Laurent D Noël
- LIPM, Université de Toulouse and INRA and CNRS, F-31326 Castanet-Tolosan, France;
| |
Collapse
|
19
|
Fetter KC, Eberhardt S, Barclay RS, Wing S, Keller SR. StomataCounter: a neural network for automatic stomata identification and counting. THE NEW PHYTOLOGIST 2019; 223:1671-1681. [PMID: 31059134 DOI: 10.1111/nph.15892] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 04/21/2019] [Indexed: 05/18/2023]
Abstract
Stomata regulate important physiological processes in plants and are often phenotyped by researchers in diverse fields of plant biology. Currently, there are no user-friendly, fully automated methods to perform the task of identifying and counting stomata, and stomata density is generally estimated by manually counting stomata. We introduce StomataCounter, an automated stomata counting system using a deep convolutional neural network to identify stomata in a variety of different microscopic images. We use a human-in-the-loop approach to train and refine a neural network on a taxonomically diverse collection of microscopic images. Our network achieves 98.1% identification accuracy on Ginkgo scanning electron microscropy micrographs, and 94.2% transfer accuracy when tested on untrained species. To facilitate adoption of the method, we provide the method in a publicly available website at http://www.stomata.science/.
Collapse
Affiliation(s)
- Karl C Fetter
- Department of Plant Biology, University of Vermont, Burlington, VT, 05405, USA
- Department of Paleobiology, Smithsonian Institution, National Museum of Natural History, Washington, DC, 20560, USA
| | | | - Rich S Barclay
- Department of Paleobiology, Smithsonian Institution, National Museum of Natural History, Washington, DC, 20560, USA
| | - Scott Wing
- Department of Paleobiology, Smithsonian Institution, National Museum of Natural History, Washington, DC, 20560, USA
| | - Stephen R Keller
- Department of Plant Biology, University of Vermont, Burlington, VT, 05405, USA
| |
Collapse
|
20
|
Molecular control of stomatal development. Biochem J 2018; 475:441-454. [PMID: 29386377 PMCID: PMC5791161 DOI: 10.1042/bcj20170413] [Citation(s) in RCA: 57] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2017] [Revised: 12/22/2017] [Accepted: 01/03/2018] [Indexed: 02/06/2023]
Abstract
Plants have evolved developmental plasticity which allows the up- or down-regulation of photosynthetic and water loss capacities as new leaves emerge. This developmental plasticity enables plants to maximise fitness and to survive under differing environments. Stomata play a pivotal role in this adaptive process. These microscopic pores in the epidermis of leaves control gas exchange between the plant and its surrounding environment. Stomatal development involves regulated cell fate decisions that ensure optimal stomatal density and spacing, enabling efficient gas exchange. The cellular patterning process is regulated by a complex signalling pathway involving extracellular ligand–receptor interactions, which, in turn, modulate the activity of three master transcription factors essential for the formation of stomata. Here, we review the current understanding of the biochemical interactions between the epidermal patterning factor ligands and the ERECTA family of leucine-rich repeat receptor kinases. We discuss how this leads to activation of a kinase cascade, regulation of the bHLH transcription factor SPEECHLESS and its relatives, and ultimately alters stomatal production.
Collapse
|
21
|
Vráblová M, Vrábl D, Hronková M, Kubásek J, Šantrůček J. Stomatal function, density and pattern, and CO 2 assimilation in Arabidopsis thaliana tmm1 and sdd1-1 mutants. PLANT BIOLOGY (STUTTGART, GERMANY) 2017; 19:689-701. [PMID: 28453883 DOI: 10.1111/plb.12577] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2017] [Accepted: 04/25/2017] [Indexed: 05/15/2023]
Abstract
Stomata modulate the exchange of water and CO2 between plant and atmosphere. Although stomatal density is known to affect CO2 diffusion into the leaf and thus photosynthetic rate, the effect of stomatal density and patterning on CO2 assimilation is not fully understood. We used wild types Col-0 and C24 and stomatal mutants sdd1-1 and tmm1 of Arabidopsis thaliana, differing in stomatal density and pattern, to study the effects of these variations on both stomatal and mesophyll conductance and CO2 assimilation rate. Anatomical parameters of stomata, leaf temperature and carbon isotope discrimination were also assessed. Our results indicate that increased stomatal density enhanced stomatal conductance in sdd1-1 plants, with no effect on photosynthesis, due to both unchanged photosynthetic capacity and decreased mesophyll conductance. Clustering (abnormal patterning formed by clusters of two or more stomata) and a highly unequal distribution of stomata between the adaxial and abaxial leaf sides in tmm1 mutants also had no effect on photosynthesis. Except at very high stomatal densities, stomatal conductance and water loss were proportional to stomatal density. Stomatal formation in clusters reduced stomatal dynamics and their operational range as well as the efficiency of CO2 transport.
Collapse
Affiliation(s)
- M Vráblová
- Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
- Institute of Environmental Technology, VSB-TU Ostrava, Ostrava, Czech Republic
| | - D Vrábl
- Faculty of Science, University of Ostrava, Ostrava, Czech Republic
| | - M Hronková
- Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
- Biology Centre of the Academy of Sciences of Czech Republic, Institute of Plant Molecular Biology, České Budějovice, Czech Republic
| | - J Kubásek
- Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
| | - J Šantrůček
- Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic
- Biology Centre of the Academy of Sciences of Czech Republic, Institute of Plant Molecular Biology, České Budějovice, Czech Republic
| |
Collapse
|
22
|
Rockwell FE, Holbrook NM. Leaf Hydraulic Architecture and Stomatal Conductance: A Functional Perspective. PLANT PHYSIOLOGY 2017; 174:1996-2007. [PMID: 28615346 PMCID: PMC5543976 DOI: 10.1104/pp.17.00303] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Accepted: 06/13/2017] [Indexed: 05/13/2023]
Abstract
Mechanistic modeling of water transport from petiole to stomata provides new perspectives on optimality in vascular and mesophyll transport properties.
Collapse
Affiliation(s)
- Fulton E Rockwell
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138
| | - N Michele Holbrook
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts 02138
| |
Collapse
|
23
|
Matthews JSA, Vialet-Chabrand SRM, Lawson T. Diurnal Variation in Gas Exchange: The Balance between Carbon Fixation and Water Loss. PLANT PHYSIOLOGY 2017; 174:614-623. [PMID: 28416704 PMCID: PMC5462061 DOI: 10.1104/pp.17.00152] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2017] [Accepted: 04/14/2017] [Indexed: 05/18/2023]
Abstract
Stomatal control of transpiration is critical for maintaining important processes, such as plant water status, leaf temperature, as well as permitting sufficient CO2 diffusion into the leaf to maintain photosynthetic rates (A). Stomatal conductance often closely correlates with A and is thought to control the balance between water loss and carbon gain. It has been suggested that a mesophyll-driven signal coordinates A and stomatal conductance responses to maintain this relationship; however, the signal has yet to be fully elucidated. Despite this correlation under stable environmental conditions, the responses of both parameters vary spatially and temporally and are dependent on species, environment, and plant water status. Most current models neglect these aspects of gas exchange, although it is clear that they play a vital role in the balance of carbon fixation and water loss. Future efforts should consider the dynamic nature of whole-plant gas exchange and how it represents much more than the sum of its individual leaf-level components, and they should take into consideration the long-term effect on gas exchange over time.
Collapse
Affiliation(s)
- Jack S A Matthews
- School of Biological Sciences, University of Essex, Colchester CO4 3SQ, United Kingdom
| | | | - Tracy Lawson
- School of Biological Sciences, University of Essex, Colchester CO4 3SQ, United Kingdom
| |
Collapse
|
24
|
Chater CCC, Caine RS, Fleming AJ, Gray JE. Origins and Evolution of Stomatal Development. PLANT PHYSIOLOGY 2017; 174:624-638. [PMID: 28356502 PMCID: PMC5462063 DOI: 10.1104/pp.17.00183] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2017] [Accepted: 03/28/2017] [Indexed: 05/05/2023]
Abstract
The fossil record suggests stomata-like pores were present on the surfaces of land plants over 400 million years ago. Whether stomata arose once or whether they arose independently across newly evolving land plant lineages has long been a matter of debate. In Arabidopsis, a genetic toolbox has been identified that tightly controls stomatal development and patterning. This includes the basic helix-loop-helix (bHLH) transcription factors SPEECHLESS (SPCH), MUTE, FAMA, and ICE/SCREAMs (SCRMs), which promote stomatal formation. These factors are regulated via a signaling cascade, which includes mobile EPIDERMAL PATTERNING FACTOR (EPF) peptides to enforce stomatal spacing. Mosses and hornworts, the most ancient extant lineages to possess stomata, possess orthologs of these Arabidopsis (Arabidopsis thaliana) stomatal toolbox genes, and manipulation in the model bryophyte Physcomitrella patens has shown that the bHLH and EPF components are also required for moss stomatal development and patterning. This supports an ancient and tightly conserved genetic origin of stomata. Here, we review recent discoveries and, by interrogating newly available plant genomes, we advance the story of stomatal development and patterning across land plant evolution. Furthermore, we identify potential orthologs of the key toolbox genes in a hornwort, further supporting a single ancient genetic origin of stomata in the ancestor to all stomatous land plants.
Collapse
Affiliation(s)
- Caspar C C Chater
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de Mexico, Cuernavaca 62210, Mexico (C.C.C.C.);
- Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom (R.S.C., J.E.G.); and
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, United Kingdom (A.J.F.)
| | - Robert S Caine
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de Mexico, Cuernavaca 62210, Mexico (C.C.C.C.)
- Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom (R.S.C., J.E.G.); and
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, United Kingdom (A.J.F.)
| | - Andrew J Fleming
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de Mexico, Cuernavaca 62210, Mexico (C.C.C.C.)
- Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom (R.S.C., J.E.G.); and
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, United Kingdom (A.J.F.)
| | - Julie E Gray
- Departamento de Biología Molecular de Plantas, Instituto de Biotecnología, Universidad Nacional Autónoma de Mexico, Cuernavaca 62210, Mexico (C.C.C.C.)
- Department of Molecular Biology and Biotechnology, University of Sheffield, Sheffield S10 2TN, United Kingdom (R.S.C., J.E.G.); and
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, United Kingdom (A.J.F.)
| |
Collapse
|
25
|
Vialet-Chabrand SRM, Matthews JSA, McAusland L, Blatt MR, Griffiths H, Lawson T. Temporal Dynamics of Stomatal Behavior: Modeling and Implications for Photosynthesis and Water Use. PLANT PHYSIOLOGY 2017; 174:603-613. [PMID: 28363993 PMCID: PMC5462030 DOI: 10.1104/pp.17.00125] [Citation(s) in RCA: 75] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/02/2017] [Accepted: 03/30/2017] [Indexed: 05/08/2023]
Abstract
An analysis of stomatal behavior reveals the importance of modeling slow stomatal responses and the impacts on photosynthesis under dynamic light environments.
Collapse
Affiliation(s)
- Silvere R M Vialet-Chabrand
- School of Biological Sciences, University of Essex, Colchester CO4 3SQ, United Kingdom (S.R.M.V.-C., J.S.A.M., T.L.)
- Division of Crop and Plant Science, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, United Kingdom (L.M.)
- Laboratory of Plant Physiology and Biophysics, University of Glasgow, Glasgow G12 8QQ, United Kingdom (M.R.B.); and
- Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (H.G.)
| | - Jack S A Matthews
- School of Biological Sciences, University of Essex, Colchester CO4 3SQ, United Kingdom (S.R.M.V.-C., J.S.A.M., T.L.)
- Division of Crop and Plant Science, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, United Kingdom (L.M.)
- Laboratory of Plant Physiology and Biophysics, University of Glasgow, Glasgow G12 8QQ, United Kingdom (M.R.B.); and
- Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (H.G.)
| | - Lorna McAusland
- School of Biological Sciences, University of Essex, Colchester CO4 3SQ, United Kingdom (S.R.M.V.-C., J.S.A.M., T.L.)
- Division of Crop and Plant Science, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, United Kingdom (L.M.)
- Laboratory of Plant Physiology and Biophysics, University of Glasgow, Glasgow G12 8QQ, United Kingdom (M.R.B.); and
- Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (H.G.)
| | - Michael R Blatt
- School of Biological Sciences, University of Essex, Colchester CO4 3SQ, United Kingdom (S.R.M.V.-C., J.S.A.M., T.L.)
- Division of Crop and Plant Science, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, United Kingdom (L.M.)
- Laboratory of Plant Physiology and Biophysics, University of Glasgow, Glasgow G12 8QQ, United Kingdom (M.R.B.); and
- Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (H.G.)
| | - Howard Griffiths
- School of Biological Sciences, University of Essex, Colchester CO4 3SQ, United Kingdom (S.R.M.V.-C., J.S.A.M., T.L.)
- Division of Crop and Plant Science, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, United Kingdom (L.M.)
- Laboratory of Plant Physiology and Biophysics, University of Glasgow, Glasgow G12 8QQ, United Kingdom (M.R.B.); and
- Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (H.G.)
| | - Tracy Lawson
- School of Biological Sciences, University of Essex, Colchester CO4 3SQ, United Kingdom (S.R.M.V.-C., J.S.A.M., T.L.);
- Division of Crop and Plant Science, School of Biosciences, University of Nottingham, Nottingham LE12 5RD, United Kingdom (L.M.);
- Laboratory of Plant Physiology and Biophysics, University of Glasgow, Glasgow G12 8QQ, United Kingdom (M.R.B.); and
- Plant Sciences, University of Cambridge, Cambridge CB2 3EA, United Kingdom (H.G.)
| |
Collapse
|
26
|
Papanatsiou M, Amtmann A, Blatt MR. Stomatal clustering in Begonia associates with the kinetics of leaf gaseous exchange and influences water use efficiency. JOURNAL OF EXPERIMENTAL BOTANY 2017; 68:2309-2315. [PMID: 28369641 PMCID: PMC5447881 DOI: 10.1093/jxb/erx072] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Stomata are microscopic pores formed by specialized cells in the leaf epidermis and permit gaseous exchange between the interior of the leaf and the atmosphere. Stomata in most plants are separated by at least one epidermal pavement cell and, individually, overlay a single substomatal cavity within the leaf. This spacing is thought to enhance stomatal function. Yet, there are several genera naturally exhibiting stomata in clusters and therefore deviating from the one-cell spacing rule with multiple stomata overlaying a single substomatal cavity. We made use of two Begonia species to investigate whether clustering of stomata alters guard cell dynamics and gas exchange under different light and dark treatments. Begonia plebeja, which forms stomatal clusters, exhibited enhanced kinetics of stomatal conductance and CO2 assimilation upon light stimuli that in turn were translated into greater water use efficiency. Our findings emphasize the importance of spacing in stomatal clusters for gaseous exchange and plant performance under environmentally limited conditions.
Collapse
Affiliation(s)
- Maria Papanatsiou
- Laboratory of Plant Physiology and Biophysics, Institute of Molecular, Cell and Systems Biology, Bower Building, University of Glasgow, Glasgow G12 8QQ, UK
| | - Anna Amtmann
- Laboratory of Plant Physiology and Biophysics, Institute of Molecular, Cell and Systems Biology, Bower Building, University of Glasgow, Glasgow G12 8QQ, UK
| | - Michael R Blatt
- Laboratory of Plant Physiology and Biophysics, Institute of Molecular, Cell and Systems Biology, Bower Building, University of Glasgow, Glasgow G12 8QQ, UK
| |
Collapse
|
27
|
Fanourakis D, Bouranis D, Giday H, Carvalho DRA, Rezaei Nejad A, Ottosen CO. Improving stomatal functioning at elevated growth air humidity: A review. JOURNAL OF PLANT PHYSIOLOGY 2016; 207:51-60. [PMID: 27792901 DOI: 10.1016/j.jplph.2016.10.003] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2016] [Accepted: 10/07/2016] [Indexed: 05/05/2023]
Abstract
Plants grown at high relative air humidity (RH≥85%) are prone to lethal wilting upon transfer to conditions of high evaporative demand. The reduced survival of these plants is related to (i) increased cuticular permeability, (ii) changed anatomical features (i.e., longer pore length and higher stomatal density), (iii) reduced rehydration ability, (iv) impaired water potential sensitivity to leaf dehydration and, most importantly, (v) compromised stomatal closing ability. This review presents a critical analysis of the strategies which stimulate stomatal functioning during plant development at high RH. These include (a) breeding for tolerant cultivars, (b) interventions with respect to the belowground environment (i.e., water deficit, increased salinity, nutrient culture and grafting) as well as (c) manipulation of the aerial environment [i.e., increased proportion of blue light, increased air movement, temporal temperature rise, and spraying with abscisic acid (ABA)]. Root hypoxia, mechanical disturbance, as well as spraying with compounds mimicking ABA, lessening its inactivation or stimulating its within-leaf redistribution are also expected to improve stomatal functioning of leaves expanded in humid air. Available evidence leaves little doubt that genotypic and phenotypic differences in stomatal functioning following cultivation at high RH are realized through the intermediacy of ABA.
Collapse
Affiliation(s)
- Dimitrios Fanourakis
- School of Agricultural Technology, Technological Educational Institute of Crete, GR 71004 Heraklio, Greece.
| | - Dimitrios Bouranis
- Plant Physiology and Morphology Laboratory, Crop Science Department, Agricultural University of Athens, Athens, Greece
| | - Habtamu Giday
- Horticulture and Product Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Dália R A Carvalho
- Horticulture and Product Physiology, Wageningen University, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands
| | - Abdolhossein Rezaei Nejad
- Department of Horticultural Sciences, Faculty of Agriculture, Lorestan University, P.O. Box 465, Khorramabad, Iran
| | - Carl-Otto Ottosen
- Aarhus University, Department of Food Science, Kirstinebjergvej 10, DK-5792 Årslev, Denmark
| |
Collapse
|