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For: Mettler T, Mühlhaus T, Hemme D, Schöttler MA, Rupprecht J, Idoine A, Veyel D, Pal SK, Yaneva-Roder L, Winck FV, Sommer F, Vosloh D, Seiwert B, Erban A, Burgos A, Arvidsson S, Schönfelder S, Arnold A, Günther M, Krause U, Lohse M, Kopka J, Nikoloski Z, Mueller-Roeber B, Willmitzer L, Bock R, Schroda M, Stitt M. Systems Analysis of the Response of Photosynthesis, Metabolism, and Growth to an Increase in Irradiance in the Photosynthetic Model Organism Chlamydomonas reinhardtii. Plant Cell 2014;26:2310-2350. [PMID: 24894045 PMCID: PMC4114937 DOI: 10.1105/tpc.114.124537] [Citation(s) in RCA: 54] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/23/2014] [Revised: 04/17/2014] [Accepted: 05/06/2014] [Indexed: 05/18/2023]
Number Cited by Other Article(s)
1
Ugya AY, Hasan DB, Ari HA, Sheng Y, Chen H, Wang Q. Antibiotic synergistic effect surge bioenergy potential and pathogen resistance of Chlorella variabilis biofilm. ENVIRONMENTAL RESEARCH 2024;259:119521. [PMID: 38960350 DOI: 10.1016/j.envres.2024.119521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/20/2024] [Revised: 06/21/2024] [Accepted: 06/29/2024] [Indexed: 07/05/2024]
2
Steichen S, Deshpande A, Mosey M, Loob J, Douchi D, Knoshaug EP, Brown S, Nielsen R, Weissman J, Carrillo LR, Laurens LML. Central transcriptional regulator controls photosynthetic growth and carbon storage in response to high light. Nat Commun 2024;15:4842. [PMID: 38844786 PMCID: PMC11156908 DOI: 10.1038/s41467-024-49090-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 05/14/2024] [Indexed: 06/09/2024]  Open
3
Liu F, Gaul L, Giometto A, Wu M. A high throughput array microhabitat platform reveals how light and nitrogen colimit the growth of algal cells. Sci Rep 2024;14:9860. [PMID: 38684720 PMCID: PMC11058252 DOI: 10.1038/s41598-024-59041-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Accepted: 04/05/2024] [Indexed: 05/02/2024]  Open
4
Plouviez M, Dubreucq E. Key Proteomics Tools for Fundamental and Applied Microalgal Research. Proteomes 2024;12:13. [PMID: 38651372 PMCID: PMC11036299 DOI: 10.3390/proteomes12020013] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 03/28/2024] [Accepted: 04/02/2024] [Indexed: 04/25/2024]  Open
5
Meloni M, Fanti S, Tedesco D, Gurrieri L, Trost P, Fermani S, Lemaire SD, Zaffagnini M, Henri J. Characterization of chloroplast ribulose-5-phosphate-3-epimerase from the microalga Chlamydomonas reinhardtii. PLANT PHYSIOLOGY 2024;194:2263-2277. [PMID: 38134324 DOI: 10.1093/plphys/kiad680] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/09/2023] [Revised: 11/09/2023] [Accepted: 11/28/2023] [Indexed: 12/24/2023]
6
Westhoff P, Weber APM. The role of metabolomics in informing strategies for improving photosynthesis. JOURNAL OF EXPERIMENTAL BOTANY 2024;75:1696-1713. [PMID: 38158893 DOI: 10.1093/jxb/erad508] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Accepted: 12/29/2023] [Indexed: 01/03/2024]
7
Hudson EP. The Calvin Benson cycle in bacteria: New insights from systems biology. Semin Cell Dev Biol 2024;155:71-83. [PMID: 37002131 DOI: 10.1016/j.semcdb.2023.03.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 02/21/2023] [Accepted: 03/16/2023] [Indexed: 03/31/2023]
8
Gurrieri L, Sparla F, Zaffagnini M, Trost P. Dark complexes of the Calvin-Benson cycle in a physiological perspective. Semin Cell Dev Biol 2024;155:48-58. [PMID: 36889996 DOI: 10.1016/j.semcdb.2023.03.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2022] [Revised: 02/27/2023] [Accepted: 03/01/2023] [Indexed: 03/08/2023]
9
Clapero V, Arrivault S, Stitt M. Natural variation in metabolism of the Calvin-Benson cycle. Semin Cell Dev Biol 2024;155:23-36. [PMID: 36959059 DOI: 10.1016/j.semcdb.2023.02.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Revised: 02/24/2023] [Accepted: 02/24/2023] [Indexed: 03/25/2023]
10
Naseema Rasheed R, Pourbakhtiar A, Mehdizadeh Allaf M, Baharlooeian M, Rafiei N, Alishah Aratboni H, Morones-Ramirez JR, Winck FV. Microalgal co-cultivation -recent methods, trends in omic-studies, applications, and future challenges. Front Bioeng Biotechnol 2023;11:1193424. [PMID: 37799812 PMCID: PMC10548143 DOI: 10.3389/fbioe.2023.1193424] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Accepted: 09/08/2023] [Indexed: 10/07/2023]  Open
11
Sporre E, Karlsen J, Schriever K, Asplund-Samuelsson J, Janasch M, Strandberg L, Karlsson A, Kotol D, Zeckey L, Piazza I, Syrén PO, Edfors F, Hudson EP. Metabolite interactions in the bacterial Calvin cycle and implications for flux regulation. Commun Biol 2023;6:947. [PMID: 37723200 PMCID: PMC10507043 DOI: 10.1038/s42003-023-05318-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2023] [Accepted: 09/01/2023] [Indexed: 09/20/2023]  Open
12
Geffen O, Achaintre D, Treves H. 13CO2-labelling and Sampling in Algae for Flux Analysis of Photosynthetic and Central Carbon Metabolism. Bio Protoc 2023;13:e4808. [PMID: 37719071 PMCID: PMC10501915 DOI: 10.21769/bioprotoc.4808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 06/09/2023] [Accepted: 06/14/2023] [Indexed: 09/19/2023]  Open
13
Liu F, Gaul L, Giometto A, Wu M. Colimitation of light and nitrogen on algal growth revealed by an array microhabitat platform. ARXIV 2023:arXiv:2307.02646v1. [PMID: 37461420 PMCID: PMC10350088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 07/22/2023]
14
Transcriptome Analysis Reveals the Mechanisms of Tolerance to High Concentrations of Calcium Chloride Stress in Parachlorella kessleri. Int J Mol Sci 2022;24:ijms24010651. [PMID: 36614098 PMCID: PMC9821113 DOI: 10.3390/ijms24010651] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2022] [Revised: 12/22/2022] [Accepted: 12/23/2022] [Indexed: 01/03/2023]  Open
15
Hui C, Schmollinger S, Strenkert D, Holbrook K, Montgomery HR, Chen S, Nelson HM, Weber PK, Merchant SS. Simple steps to enable reproducibility: culture conditions affecting Chlamydomonas growth and elemental composition. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022;111:995-1014. [PMID: 35699388 DOI: 10.1111/tpj.15867] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Revised: 06/01/2022] [Accepted: 06/03/2022] [Indexed: 05/26/2023]
16
Chen YJ, Huang YL, Chen YH, Chang ST, Yeh TF. Biogenic Volatile Organic Compounds and Protein Expressions of Chamaecyparis formosensis and Chamaecyparis obtusa var. formosana Leaves under Different Light Intensities and Temperatures. PLANTS 2022;11:plants11121535. [PMID: 35736687 PMCID: PMC9231097 DOI: 10.3390/plants11121535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Revised: 06/01/2022] [Accepted: 06/07/2022] [Indexed: 11/22/2022]
17
Le Moigne T, Sarti E, Nourisson A, Zaffagnini M, Carbone A, Lemaire SD, Henri J. Crystal structure of chloroplast fructose-1,6-bisphosphate aldolase from the green alga Chlamydomonas reinhardtii. J Struct Biol 2022;214:107873. [DOI: 10.1016/j.jsb.2022.107873] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2022] [Revised: 05/31/2022] [Accepted: 06/02/2022] [Indexed: 11/25/2022]
18
Saint-Sorny M, Brzezowski P, Arrivault S, Alric J, Johnson X. Interactions Between Carbon Metabolism and Photosynthetic Electron Transport in a Chlamydomonas reinhardtii Mutant Without CO2 Fixation by RuBisCO. FRONTIERS IN PLANT SCIENCE 2022;13:876439. [PMID: 35574084 PMCID: PMC9096841 DOI: 10.3389/fpls.2022.876439] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2022] [Accepted: 03/31/2022] [Indexed: 06/15/2023]
19
Zhang N, Pazouki L, Nguyen H, Jacobshagen S, Bigge BM, Xia M, Mattoon EM, Klebanovych A, Sorkin M, Nusinow DA, Avasthi P, Czymmek KJ, Zhang R. Comparative Phenotyping of Two Commonly Used Chlamydomonas reinhardtii Background Strains: CC-1690 (21gr) and CC-5325 (The CLiP Mutant Library Background). PLANTS (BASEL, SWITZERLAND) 2022;11:585. [PMID: 35270055 PMCID: PMC8912731 DOI: 10.3390/plants11050585] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Revised: 02/07/2022] [Accepted: 02/14/2022] [Indexed: 05/02/2023]
20
Széles E, Nagy K, Ábrahám Á, Kovács S, Podmaniczki A, Nagy V, Kovács L, Galajda P, Tóth SZ. Microfluidic Platforms Designed for Morphological and Photosynthetic Investigations of Chlamydomonas reinhardtii on a Single-Cell Level. Cells 2022;11:cells11020285. [PMID: 35053401 PMCID: PMC8774182 DOI: 10.3390/cells11020285] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2021] [Revised: 01/07/2022] [Accepted: 01/13/2022] [Indexed: 11/16/2022]  Open
21
McQuillan JL, Berndt AJ, Sproles AE, Mayfield SP, Pandhal J. Novel cis-regulatory elements as synthetic promoters to drive recombinant protein expression from the Chlamydomonas reinhardtii nuclear genome. N Biotechnol 2022;68:9-18. [PMID: 34990855 DOI: 10.1016/j.nbt.2022.01.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Revised: 10/29/2021] [Accepted: 01/01/2022] [Indexed: 12/17/2022]
22
Treves H, Küken A, Arrivault S, Ishihara H, Hoppe I, Erban A, Höhne M, Moraes TA, Kopka J, Szymanski J, Nikoloski Z, Stitt M. Carbon flux through photosynthesis and central carbon metabolism show distinct patterns between algae, C3 and C4 plants. NATURE PLANTS 2022;8:78-91. [PMID: 34949804 PMCID: PMC8786664 DOI: 10.1038/s41477-021-01042-5] [Citation(s) in RCA: 41] [Impact Index Per Article: 20.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Accepted: 11/09/2021] [Indexed: 05/26/2023]
23
Stitt M, Luca Borghi G, Arrivault S. Targeted metabolite profiling as a top-down approach to uncover interspecies diversity and identify key conserved operational features in the Calvin-Benson cycle. JOURNAL OF EXPERIMENTAL BOTANY 2021;72:5961-5986. [PMID: 34473300 PMCID: PMC8411860 DOI: 10.1093/jxb/erab291] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2021] [Accepted: 06/21/2021] [Indexed: 05/02/2023]
24
Stephens TG, Gabr A, Calatrava V, Grossman AR, Bhattacharya D. Why is primary endosymbiosis so rare? THE NEW PHYTOLOGIST 2021;231:1693-1699. [PMID: 34018613 PMCID: PMC8711089 DOI: 10.1111/nph.17478] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 05/05/2021] [Indexed: 05/05/2023]
25
Oren N, Timm S, Frank M, Mantovani O, Murik O, Hagemann M. Red/far-red light signals regulate the activity of the carbon-concentrating mechanism in cyanobacteria. SCIENCE ADVANCES 2021;7:7/34/eabg0435. [PMID: 34407941 PMCID: PMC8373116 DOI: 10.1126/sciadv.abg0435] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Accepted: 06/28/2021] [Indexed: 05/11/2023]
26
Emrich-Mills TZ, Yates G, Barrett J, Girr P, Grouneva I, Lau CS, Walker CE, Kwok TK, Davey JW, Johnson MP, Mackinder LCM. A recombineering pipeline to clone large and complex genes in Chlamydomonas. THE PLANT CELL 2021;33:1161-1181. [PMID: 33723601 PMCID: PMC8633747 DOI: 10.1093/plcell/koab024] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Accepted: 01/18/2021] [Indexed: 05/10/2023]
27
Rees TAV, Raven JA. The maximum growth rate hypothesis is correct for eukaryotic photosynthetic organisms, but not cyanobacteria. THE NEW PHYTOLOGIST 2021;230:601-611. [PMID: 33449358 PMCID: PMC8048539 DOI: 10.1111/nph.17190] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Accepted: 12/23/2020] [Indexed: 05/12/2023]
28
Kleine T, Nägele T, Neuhaus HE, Schmitz-Linneweber C, Fernie AR, Geigenberger P, Grimm B, Kaufmann K, Klipp E, Meurer J, Möhlmann T, Mühlhaus T, Naranjo B, Nickelsen J, Richter A, Ruwe H, Schroda M, Schwenkert S, Trentmann O, Willmund F, Zoschke R, Leister D. Acclimation in plants - the Green Hub consortium. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021;106:23-40. [PMID: 33368770 DOI: 10.1111/tpj.15144] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2020] [Revised: 12/08/2020] [Accepted: 12/14/2020] [Indexed: 05/04/2023]
29
Plant Proteomics and Systems Biology. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021;1346:51-66. [DOI: 10.1007/978-3-030-80352-0_3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
30
Winck FV, Monteiro LDFR, Souza GM. Introduction: Advances in Plant Omics and Systems Biology. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021;1346:1-9. [DOI: 10.1007/978-3-030-80352-0_1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
31
Martins MCM, Mafra V, Monte-Bello CC, Caldana C. The Contribution of Metabolomics to Systems Biology: Current Applications Bridging Genotype and Phenotype in Plant Science. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2021;1346:91-105. [DOI: 10.1007/978-3-030-80352-0_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
32
High-Resolution Crystal Structure of Chloroplastic Ribose-5-Phosphate Isomerase from Chlamydomonas reinhardtii-An Enzyme Involved in the Photosynthetic Calvin-Benson Cycle. Int J Mol Sci 2020;21:ijms21207787. [PMID: 33096784 PMCID: PMC7589169 DOI: 10.3390/ijms21207787] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2020] [Revised: 10/16/2020] [Accepted: 10/19/2020] [Indexed: 01/01/2023]  Open
33
Schneider K, Venn B, Mühlhaus T. TMEA: A Thermodynamically Motivated Framework for Functional Characterization of Biological Responses to System Acclimation. ENTROPY 2020;22:e22091030. [PMID: 33286800 PMCID: PMC7597090 DOI: 10.3390/e22091030] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/16/2020] [Revised: 09/07/2020] [Accepted: 09/11/2020] [Indexed: 12/16/2022]
34
Küken A, Gennermann K, Nikoloski Z. Characterization of maximal enzyme catalytic rates in central metabolism of Arabidopsis thaliana. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020;103:2168-2177. [PMID: 32656814 DOI: 10.1111/tpj.14890] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Revised: 05/06/2020] [Accepted: 06/09/2020] [Indexed: 06/11/2023]
35
Puzanskiy RK, Romanyuk DA, Kirpichnikova AA, Shishova MF. Alteration in the Expression of Genes Encoding Primary Metabolism Enzymes and Plastid Transporters during the Culture Growth of Chlamydomonas reinhardtii. Mol Biol 2020. [DOI: 10.1134/s0026893320040147] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
36
Treves H, Siemiatkowska B, Luzarowska U, Murik O, Fernandez-Pozo N, Moraes TA, Erban A, Armbruster U, Brotman Y, Kopka J, Rensing SA, Szymanski J, Stitt M. Multi-omics reveals mechanisms of total resistance to extreme illumination of a desert alga. NATURE PLANTS 2020;6:1031-1043. [PMID: 32719473 DOI: 10.1038/s41477-020-0729-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2019] [Accepted: 06/24/2020] [Indexed: 05/25/2023]
37
Sarkar D, Maranas CD. SNPeffect: identifying functional roles of SNPs using metabolic networks. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020;103:512-531. [PMID: 32167625 PMCID: PMC9328443 DOI: 10.1111/tpj.14746] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Accepted: 02/20/2020] [Indexed: 05/04/2023]
38
Hammel A, Sommer F, Zimmer D, Stitt M, Mühlhaus T, Schroda M. Overexpression of Sedoheptulose-1,7-Bisphosphatase Enhances Photosynthesis in Chlamydomonas reinhardtii and Has No Effect on the Abundance of Other Calvin-Benson Cycle Enzymes. FRONTIERS IN PLANT SCIENCE 2020;11:868. [PMID: 32655601 PMCID: PMC7324757 DOI: 10.3389/fpls.2020.00868] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2020] [Accepted: 05/27/2020] [Indexed: 05/18/2023]
39
Vecchi V, Barera S, Bassi R, Dall’Osto L. Potential and Challenges of Improving Photosynthesis in Algae. PLANTS 2020;9:plants9010067. [PMID: 31947868 PMCID: PMC7020468 DOI: 10.3390/plants9010067] [Citation(s) in RCA: 46] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2019] [Revised: 12/24/2019] [Accepted: 12/30/2019] [Indexed: 11/16/2022]
40
Schuster M, Gao Y, Schöttler MA, Bock R, Zoschke R. Limited Responsiveness of Chloroplast Gene Expression during Acclimation to High Light in Tobacco. PLANT PHYSIOLOGY 2020;182:424-435. [PMID: 31636102 PMCID: PMC6945831 DOI: 10.1104/pp.19.00953] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/06/2019] [Accepted: 10/08/2019] [Indexed: 05/21/2023]
41
Borghi GL, Moraes TA, Günther M, Feil R, Mengin V, Lunn JE, Stitt M, Arrivault S. Relationship between irradiance and levels of Calvin-Benson cycle and other intermediates in the model eudicot Arabidopsis and the model monocot rice. JOURNAL OF EXPERIMENTAL BOTANY 2019;70:5809-5825. [PMID: 31353406 PMCID: PMC6812724 DOI: 10.1093/jxb/erz346] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2019] [Accepted: 07/22/2019] [Indexed: 05/02/2023]
42
Yang B, Zhong Z, Wang T, Ou Y, Tian J, Komatsu S, Zhang L. Integrative omics of Lonicera japonica Thunb. Flower development unravels molecular changes regulating secondary metabolites. J Proteomics 2019;208:103470. [PMID: 31374363 PMCID: PMC7102679 DOI: 10.1016/j.jprot.2019.103470] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2019] [Revised: 07/12/2019] [Accepted: 07/24/2019] [Indexed: 12/26/2022]
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Werner A, Broeckling CD, Prasad A, Peebles CAM. A comprehensive time-course metabolite profiling of the model cyanobacterium Synechocystis sp. PCC 6803 under diurnal light:dark cycles. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019;99:379-388. [PMID: 30889309 DOI: 10.1111/tpj.14320] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2018] [Revised: 03/06/2019] [Accepted: 03/12/2019] [Indexed: 05/07/2023]
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Arrivault S, Alexandre Moraes T, Obata T, Medeiros DB, Fernie AR, Boulouis A, Ludwig M, Lunn JE, Borghi GL, Schlereth A, Guenther M, Stitt M. Metabolite profiles reveal interspecific variation in operation of the Calvin-Benson cycle in both C4 and C3 plants. JOURNAL OF EXPERIMENTAL BOTANY 2019;70:1843-1858. [PMID: 30773587 PMCID: PMC6436152 DOI: 10.1093/jxb/erz051] [Citation(s) in RCA: 33] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/02/2018] [Accepted: 01/29/2019] [Indexed: 05/18/2023]
45
Rohr M, Ries F, Herkt C, Gotsmann VL, Westrich LD, Gries K, Trösch R, Christmann J, Chaux-Jukic F, Jung M, Zimmer D, Mühlhaus T, Sommer F, Schroda M, Keller S, Möhlmann T, Willmund F. The Role of Plastidic Trigger Factor Serving Protein Biogenesis in Green Algae and Land Plants. PLANT PHYSIOLOGY 2019;179:1093-1110. [PMID: 30651302 PMCID: PMC6393800 DOI: 10.1104/pp.18.01252] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Accepted: 01/07/2019] [Indexed: 05/07/2023]
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Nama S, Madireddi SK, Yadav RM, Subramanyam R. Non-photochemical quenching-dependent acclimation and thylakoid organization of Chlamydomonas reinhardtii to high light stress. PHOTOSYNTHESIS RESEARCH 2019;139:387-400. [PMID: 29982908 DOI: 10.1007/s11120-018-0551-7] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2018] [Accepted: 06/30/2018] [Indexed: 05/19/2023]
47
Lachmann SC, Mettler‐Altmann T, Wacker A, Spijkerman E. Nitrate or ammonium: Influences of nitrogen source on the physiology of a green alga. Ecol Evol 2019;9:1070-1082. [PMID: 30805141 PMCID: PMC6374670 DOI: 10.1002/ece3.4790] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2018] [Revised: 10/19/2018] [Accepted: 10/30/2018] [Indexed: 11/25/2022]  Open
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Kaye Y, Huang W, Clowez S, Saroussi S, Idoine A, Sanz-Luque E, Grossman AR. The mitochondrial alternative oxidase from Chlamydomonas reinhardtii enables survival in high light. J Biol Chem 2018;294:1380-1395. [PMID: 30510139 DOI: 10.1074/jbc.ra118.004667] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 10/24/2018] [Indexed: 01/07/2023]  Open
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Zimmer D, Schneider K, Sommer F, Schroda M, Mühlhaus T. Artificial Intelligence Understands Peptide Observability and Assists With Absolute Protein Quantification. FRONTIERS IN PLANT SCIENCE 2018;9:1559. [PMID: 30483279 PMCID: PMC6242780 DOI: 10.3389/fpls.2018.01559] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Accepted: 10/04/2018] [Indexed: 05/20/2023]
50
Krüsemann JL, Lindner SN, Dempfle M, Widmer J, Arrivault S, Debacker M, He H, Kubis A, Chayot R, Anissimova M, Marlière P, Cotton CAR, Bar‐Even A. Artificial pathway emergence in central metabolism from three recursive phosphoketolase reactions. FEBS J 2018;285:4367-4377. [DOI: 10.1111/febs.14682] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2018] [Revised: 09/11/2018] [Accepted: 10/17/2018] [Indexed: 01/17/2023]
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