1
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Rizzo G, Petrelli V, Sibillano T, De Caro L, Giangregorio MM, Lo Presti M, Omenetto FG, Giannini C, Mastrorilli P, Farinola GM. Raman, WAXS, and Solid-State NMR Characterizations of Regenerated Silk Fibroin Using Lanthanide Ions as Chaotropic Agents. ACS OMEGA 2023; 8:24165-24175. [PMID: 37457447 PMCID: PMC10339335 DOI: 10.1021/acsomega.2c07149] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/06/2022] [Accepted: 04/12/2023] [Indexed: 07/18/2023]
Abstract
Bombyx mori silk fibroin (SF) has been reported as a convenient natural material for regenerative medicine, optoelectronics, and many other technological applications. SF owes its unique features to the hierarchical organization of the fibers. Many efforts have been made to set up protocols for dissolution since many applications of SF are based on regenerated solutions and fibers, but chaotropic conditions required to disassemble the packing of the polymer afford solutions with poor crystalline behavior. Our previous research has disclosed a dissolution and regeneration process of highly crystalline fibers involving lanthanide ions as chaotropic agents, demonstrating that each lanthanide has its own unique interaction with SF. Herein, we report elucidation of the structure of Ln-SF fibers by the combined use of Raman spectroscopy, wide-angle X-ray scattering (WAXS), and solid-state NMR techniques. Raman spectra confirmed the coordination of metal ions to SF, WAXS results highlighted the crystalline content of fibers, and solid-state NMR enabled the assessment of different ratios of secondary structures in the protein.
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Affiliation(s)
- Giorgio Rizzo
- Dipartimento
di Chimica, Università degli Studi
di Bari Aldo Moro, via Orabona 4, 70125 Bari, Italy
| | | | - Teresa Sibillano
- CNR
IC−Institute of Crystallography, via Amendola 122/O, Bari 70126, Italy
| | - Liberato De Caro
- CNR
IC−Institute of Crystallography, via Amendola 122/O, Bari 70126, Italy
| | - Maria Michela Giangregorio
- Institute
of Nanotechnology, CNR NANOTEC, c/o, Dipartimento di Chimica, Università di Bari, via Orabona 4, 70126 Bari, Italy
| | - Marco Lo Presti
- Silklab,
Department of Biomedical Engineering, Tufts
University, 200 Boston Avenue, Suite 4875, Medford, Massachusetts 02155, United States
| | - Fiorenzo G. Omenetto
- Silklab,
Department of Biomedical Engineering, Tufts
University, 200 Boston Avenue, Suite 4875, Medford, Massachusetts 02155, United States
| | - Cinzia Giannini
- CNR
IC−Institute of Crystallography, via Amendola 122/O, Bari 70126, Italy
| | | | - Gianluca M. Farinola
- Dipartimento
di Chimica, Università degli Studi
di Bari Aldo Moro, via Orabona 4, 70125 Bari, Italy
- Silklab,
Department of Biomedical Engineering, Tufts
University, 200 Boston Avenue, Suite 4875, Medford, Massachusetts 02155, United States
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2
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Rizzo G, Albano G, Sibillano T, Giannini C, Musio R, Omenetto FG, Farinola GM. Silk−Fibroin‐Supported Palladium Catalyst for Suzuki‐Miyaura and Ullmann Coupling Reactions of Aryl Chlorides. European J Org Chem 2022. [DOI: 10.1002/ejoc.202101567] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Giorgio Rizzo
- Dipartimento di Chimica Università degli Studi di Bari Aldo Moro Via Edoardo Orabona 4 70126 Bari Italy
| | - Gianluigi Albano
- Dipartimento di Chimica Università degli Studi di Bari Aldo Moro Via Edoardo Orabona 4 70126 Bari Italy
| | - Teresa Sibillano
- Istituto di Cristallografia Consiglio Nazionale delle Ricerche (IC–CNR) Via Giovanni Amendola 122/O Bari 70126 Italy
| | - Cinzia Giannini
- Istituto di Cristallografia Consiglio Nazionale delle Ricerche (IC–CNR) Via Giovanni Amendola 122/O Bari 70126 Italy
| | - Roberta Musio
- Dipartimento di Chimica Università degli Studi di Bari Aldo Moro Via Edoardo Orabona 4 70126 Bari Italy
| | - Fiorenzo G. Omenetto
- Silklab, Department of Biomedical Engineering Tufts University 4 Colby Street Medford Massachusetts 02155 USA
| | - Gianluca M. Farinola
- Dipartimento di Chimica Università degli Studi di Bari Aldo Moro Via Edoardo Orabona 4 70126 Bari Italy
- Silklab, Department of Biomedical Engineering Tufts University 4 Colby Street Medford Massachusetts 02155 USA
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3
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Giannini C, De Caro L, Terzi A, Fusaro L, Altamura D, Diaz A, Lassandro R, Boccafoschi F, Bunk O. Decellularized pericardium tissues at increasing glucose, galactose and ribose concentrations and at different time points studied using scanning X-ray microscopy. IUCRJ 2021; 8:621-632. [PMID: 34258010 PMCID: PMC8256709 DOI: 10.1107/s2052252521005054] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/25/2021] [Accepted: 05/12/2021] [Indexed: 05/13/2023]
Abstract
Diseases like widespread diabetes or rare galactosemia may lead to high sugar concentrations in the human body, thereby promoting the formation of glycoconjugates. Glycation of collagen, i.e. the formation of glucose bridges, is nonenzymatic and therefore cannot be prevented in any other way than keeping the sugar level low. It relates to secondary diseases, abundantly occurring in aging populations and diabetics. However, little is known about the effects of glycation of collagen on the molecular level. We studied in vitro the effect of glycation, with d-glucose and d-galactose as well as d-ribose, on the structure of type 1 collagen by preparing decellularized matrices of bovine pericardia soaked in different sugar solutions, at increasing concentrations (0, 2.5, 5, 10, 20 and 40 mg ml-1), and incubated at 37°C for 3, 14, 30 and 90 days. The tissue samples were analyzed with small- and wide-angle X-ray scattering in scanning mode. We found that glucose and galactose produce similar changes in collagen, i.e. they mainly affect the lateral packing between macromolecules. However, ribose is much faster in glycation, provoking a larger effect on the lateral packing, but also seems to cause qualitatively different effects on the collagen structure.
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Affiliation(s)
- Cinzia Giannini
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
| | - Liberato De Caro
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
| | - Alberta Terzi
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
| | - Luca Fusaro
- Department of Health Sciences, University of Piemonte Orientale, Novara, Italy
- Tissuegraft srl., Novara, Italy
| | - Davide Altamura
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
| | - Ana Diaz
- Paul Scherrer Institut, Villigen PSI, 5232, Switzerland
| | - Rocco Lassandro
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
| | - Francesca Boccafoschi
- Institute of Crystallography, National Research Council, Bari, 70126, Italy
- Department of Health Sciences, University of Piemonte Orientale, Novara, Italy
| | - Oliver Bunk
- Paul Scherrer Institut, Villigen PSI, 5232, Switzerland
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4
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Rizzo G, Lo Presti M, Giannini C, Sibillano T, Milella A, Guidetti G, Musio R, Omenetto FG, Farinola GM. Bombyx mori Silk Fibroin Regeneration in Solution of Lanthanide Ions: A Systematic Investigation. Front Bioeng Biotechnol 2021; 9:653033. [PMID: 34178956 PMCID: PMC8222627 DOI: 10.3389/fbioe.2021.653033] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2021] [Accepted: 05/11/2021] [Indexed: 11/13/2022] Open
Abstract
Silk Fibroin (SF) obtained from Bombyx mori is a very attractive biopolymer that can be useful for many technological applications, from optoelectronics and photonics to biomedicine. It can be processed from aqueous solutions to obtain many scaffolds. SF dissolution is possible only with the mediation of chaotropic salts that disrupt the secondary structure of the protein. As a consequence, recovered materials have disordered structures. In a previous paper, it was shown that, by modifying the standard Ajisawa's method by using a lanthanide salt, CeCl3, as the chaotropic agent, it is possible to regenerate SF as a fibrous material with a very ordered structure, similar to that of the pristine fiber, and doped with Ce+3 ions. Since SF exhibits a moderate fluorescence which can be enhanced by the incorporation of organic molecules, ions and nanoparticles, the possibility of doping it with lanthanide ions could be an appealing approach for the development of new photonic systems. Here, a systematic investigation of the behavior of degummed SF in the presence of all lanthanide ions, Ln+3, is reported. It has been found that all lanthanide chlorides are chaotropic salts for solubilizing SF. Ln+3 ions at the beginning and the end of the series (La+3, Pr+3, Er+3, Tm+3, Yb+3, Lu+3) favor the reprecipitation of fibrous SF as already found for Ce+3. In most cases, the obtained fiber preserves the morphological and structural features of the pristine SF. With the exception of SF treated with La+3, Tm+3, and Lu+3, for all the fibers re-precipitated a concentration of Ln+3 between 0.2 and 0.4% at was measured, comparable to that measured for Ce+3-doped SF.
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Affiliation(s)
- Giorgio Rizzo
- Dipartimento di Chimica, Università degli Studi di Bari “Aldo Moro”, Bari, Italy
| | - Marco Lo Presti
- Silklab, Department of Biomedical Engineering, Tufts University, Medford, MA, United States
| | | | | | - Antonella Milella
- Dipartimento di Chimica, Università degli Studi di Bari “Aldo Moro”, Bari, Italy
| | - Giulia Guidetti
- Silklab, Department of Biomedical Engineering, Tufts University, Medford, MA, United States
| | - Roberta Musio
- Dipartimento di Chimica, Università degli Studi di Bari “Aldo Moro”, Bari, Italy
| | - Fiorenzo G. Omenetto
- Silklab, Department of Biomedical Engineering, Tufts University, Medford, MA, United States
| | - Gianluca M. Farinola
- Dipartimento di Chimica, Università degli Studi di Bari “Aldo Moro”, Bari, Italy
- Silklab, Department of Biomedical Engineering, Tufts University, Medford, MA, United States
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5
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Salvatore L, Gallo N, Natali ML, Terzi A, Sannino A, Madaghiele M. Mimicking the Hierarchical Organization of Natural Collagen: Toward the Development of Ideal Scaffolding Material for Tissue Regeneration. Front Bioeng Biotechnol 2021; 9:644595. [PMID: 33987173 PMCID: PMC8112590 DOI: 10.3389/fbioe.2021.644595] [Citation(s) in RCA: 54] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2020] [Accepted: 03/15/2021] [Indexed: 12/11/2022] Open
Abstract
Biological materials found in living organisms, many of which are proteins, feature a complex hierarchical organization. Type I collagen, a fibrous structural protein ubiquitous in the mammalian body, provides a striking example of such a hierarchical material, with peculiar architectural features ranging from the amino acid sequence at the nanoscale (primary structure) up to the assembly of fibrils (quaternary structure) and fibers, with lengths of the order of microns. Collagen plays a dominant role in maintaining the biological and structural integrity of various tissues and organs, such as bone, skin, tendons, blood vessels, and cartilage. Thus, "artificial" collagen-based fibrous assemblies, endowed with appropriate structural properties, represent ideal substrates for the development of devices for tissue engineering applications. In recent years, with the ultimate goal of developing three-dimensional scaffolds with optimal bioactivity able to promote both regeneration and functional recovery of a damaged tissue, numerous studies focused on the capability to finely modulate the scaffold architecture at the microscale and the nanoscale in order to closely mimic the hierarchical features of the extracellular matrix and, in particular, the natural patterning of collagen. All of these studies clearly show that the accurate characterization of the collagen structure at the submolecular and supramolecular levels is pivotal to the understanding of the relationships between the nanostructural/microstructural properties of the fabricated scaffold and its macroscopic performance. Several studies also demonstrate that the selected processing, including any crosslinking and/or sterilization treatments, can strongly affect the architecture of collagen at various length scales. The aim of this review is to highlight the most recent findings on the development of collagen-based scaffolds with optimized properties for tissue engineering. The optimization of the scaffolds is particularly related to the modulation of the collagen architecture, which, in turn, impacts on the achieved bioactivity.
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Affiliation(s)
- Luca Salvatore
- Department of Engineering for Innovation, University of Salento, Lecce, Italy
| | - Nunzia Gallo
- Department of Engineering for Innovation, University of Salento, Lecce, Italy
| | - Maria Lucia Natali
- Department of Engineering for Innovation, University of Salento, Lecce, Italy
| | - Alberta Terzi
- Institute of Crystallography, National Research Council, Bari, Italy
| | - Alessandro Sannino
- Department of Engineering for Innovation, University of Salento, Lecce, Italy
| | - Marta Madaghiele
- Department of Engineering for Innovation, University of Salento, Lecce, Italy
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6
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Rosén T, Wang R, He H, Zhan C, Chodankar S, Hsiao BS. Shear-free mixing to achieve accurate temporospatial nanoscale kinetics through scanning-SAXS: ion-induced phase transition of dispersed cellulose nanocrystals. LAB ON A CHIP 2021; 21:1084-1095. [PMID: 33514993 PMCID: PMC8323814 DOI: 10.1039/d0lc01048k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Accepted: 01/25/2021] [Indexed: 05/25/2023]
Abstract
Time-resolved in situ characterization of well-defined mixing processes using small-angle X-ray scattering (SAXS) is usually challenging, especially if the process involves changes of material viscoelasticity. In specific, it can be difficult to create a continuous mixing experiment without shearing the material of interest; a desirable situation since shear flow both affects nanoscale structures and flow stability as well as resulting in unreliable time-resolved data. Here, we demonstrate a flow-focusing mixing device for in situ nanostructural characterization using scanning-SAXS. Given the interfacial tension and viscosity ratio between core and sheath fluids, the core material confined by sheath flows is completely detached from the walls and forms a zero-shear plug flow at the channel center, allowing for a trivial conversion of spatial coordinates to mixing times. With this technique, the time-resolved gel formation of dispersed cellulose nanocrystals (CNCs) was studied by mixing with a sodium chloride solution. It is observed how locally ordered regions, so called tactoids, are disrupted when the added monovalent ions affect the electrostatic interactions, which in turn leads to a loss of CNC alignment through enhanced rotary diffusion. The demonstrated flow-focusing scanning-SAXS technique can be used to unveil important kinetics during structural formation of nanocellulosic materials. However, the same technique is also applicable in many soft matter systems to provide new insights into the nanoscale dynamics during mixing.
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Affiliation(s)
- Tomas Rosén
- Department of Chemistry, Stony Brook UniversityStony BrookNew York 11794-3400USA
- Department of Fiber and Polymer Technology, KTH Royal Institute of TechnologySE-100 44 StockholmSweden
- Wallenberg Wood Science Center, KTH Royal Institute of TechnologySE-100 44 StockholmSweden
| | - Ruifu Wang
- Department of Chemistry, Stony Brook UniversityStony BrookNew York 11794-3400USA
| | - HongRui He
- Department of Chemistry, Stony Brook UniversityStony BrookNew York 11794-3400USA
| | - Chengbo Zhan
- Department of Chemistry, Stony Brook UniversityStony BrookNew York 11794-3400USA
| | - Shirish Chodankar
- National Synchrotron Light Source II, Brookhaven National LabUptonNYUSA
| | - Benjamin S. Hsiao
- Department of Chemistry, Stony Brook UniversityStony BrookNew York 11794-3400USA
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7
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Rizzo G, Lo Presti M, Giannini C, Sibillano T, Milella A, Matzeu G, Musio R, Omenetto FG, Farinola GM. Silk Fibroin Processing from CeCl
3
Aqueous Solution: Fibers Regeneration and Doping with Ce(III). MACROMOL CHEM PHYS 2020. [DOI: 10.1002/macp.202000066] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Giorgio Rizzo
- Dipartimento di ChimicaUniversità degli Studi di Bari “Aldo Moro” via Orabona 4 Bari 70126 Italy
| | - Marco Lo Presti
- Dipartimento di ChimicaUniversità degli Studi di Bari “Aldo Moro” via Orabona 4 Bari 70126 Italy
| | - Cinzia Giannini
- CNR IC–Institute of Crystallography via Amendola 122/O Bari 70126 Italy
| | - Teresa Sibillano
- CNR IC–Institute of Crystallography via Amendola 122/O Bari 70126 Italy
| | - Antonella Milella
- Dipartimento di ChimicaUniversità degli Studi di Bari “Aldo Moro” via Orabona 4 Bari 70126 Italy
| | - Giusy Matzeu
- Silklab, Department of Biomedical EngineeringTufts University 4 Colby Street Medford MA 02155 USA
| | - Roberta Musio
- Dipartimento di ChimicaUniversità degli Studi di Bari “Aldo Moro” via Orabona 4 Bari 70126 Italy
| | - Fiorenzo G. Omenetto
- Silklab, Department of Biomedical EngineeringTufts University 4 Colby Street Medford MA 02155 USA
| | - Gianluca M. Farinola
- Dipartimento di ChimicaUniversità degli Studi di Bari “Aldo Moro” via Orabona 4 Bari 70126 Italy
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8
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Zhou Y, Alexandrov S, Nolan A, Das N, Dey R, Leahy M. Noninvasive detection of nanoscale structural changes in cornea associated with cross-linking treatment. JOURNAL OF BIOPHOTONICS 2020; 13:e201960234. [PMID: 32067338 DOI: 10.1002/jbio.201960234] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/20/2019] [Revised: 01/24/2020] [Accepted: 02/13/2020] [Indexed: 05/18/2023]
Abstract
Corneal cross-linking (CXL) using ultraviolet-A (UVA) irradiation with a riboflavin photosensitizer has grown from an interesting concept to a practical clinical treatment for corneal ectatic diseases globally, such as keratoconus. To characterize the corneal structural changes, existing methods such as X-ray microscopy, transmission electron microscopy, histology and optical coherence tomography (OCT) have been used. However, these methods have various drawbacks such as invasive detection, the impossibility for in vivo measurement, or limited resolution and sensitivity to structural alterations. Here, we report the application of oversampling nanosensitive OCT for probing the corneal structural alterations. The results indicate that the spatial period increases slightly after 30 minutes riboflavin instillation but decreases significantly after 30 minutes UVA irradiation following the Dresden protocol. The proposed noninvasive method can be implemented using existing OCT systems, without any additional components, for detecting nanoscale changes with the potential to assist diagnostic assessment during CXL treatment, and possibly to be a real-time monitoring tool in clinics.
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Affiliation(s)
- Yi Zhou
- Tissue Optics and Microcirculation Imaging Facility, National Biophotonics and Imaging Platform, School of Physics, National University of Ireland, Galway, Ireland
| | - Sergey Alexandrov
- Tissue Optics and Microcirculation Imaging Facility, National Biophotonics and Imaging Platform, School of Physics, National University of Ireland, Galway, Ireland
| | - Andrew Nolan
- Tissue Optics and Microcirculation Imaging Facility, National Biophotonics and Imaging Platform, School of Physics, National University of Ireland, Galway, Ireland
| | - Nandan Das
- Tissue Optics and Microcirculation Imaging Facility, National Biophotonics and Imaging Platform, School of Physics, National University of Ireland, Galway, Ireland
| | - Rajib Dey
- Tissue Optics and Microcirculation Imaging Facility, National Biophotonics and Imaging Platform, School of Physics, National University of Ireland, Galway, Ireland
| | - Martin Leahy
- Tissue Optics and Microcirculation Imaging Facility, National Biophotonics and Imaging Platform, School of Physics, National University of Ireland, Galway, Ireland
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9
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Abstract
Living tissues, heterogeneous at the microscale, usually scatter light. Strong scattering is responsible for the whiteness of bones, teeth, and brain and is known to limit severely the performances of biomedical optical imaging. Transparency is also found within collagen-based extracellular tissues such as decalcified ivory, fish scales, or cornea. However, its physical origin is still poorly understood. Here, we unveil the presence of a gap of transparency in scattering fibrillar collagen matrices within a narrow range of concentration in the phase diagram. This precholesteric phase presents a three-dimensional (3D) orientational order biomimetic of that in natural tissues. By quantitatively studying the relation between the 3D fibrillar network and the optical and mechanical properties of the macroscopic matrices, we show that transparency results from structural partial order inhibiting light scattering, while preserving mechanical stability, stiffness, and nonlinearity. The striking similarities between synthetic and natural materials provide insights for better understanding the occurring transparency.
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10
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Abstract
Natural fibrillar-like macromolecules find applications in several fields, thanks to their peculiar features, and are considered perfect building blocks for natural and artificial functional materials. Indeed, fibrous proteins (such as collagen or fibroin) are commonly used in scaffold fabrication for biomedical applications, due to the high biophysical similarity with the extracellular matrix (ECM) which stimulates tissue regeneration. In the textile industry, cellulose-based fabrics are widely used in place of cotton and viscose, which both have sustainability issues related to their fabrication. With this in mind, the structural characterization of the materials at molecular scale plays a fundamental role in gaining insight into the fiber assembly process. In this work, we report on three fibers of research interest (i.e., type I collagen, silk fibroin extracted from Bombyx mori, and cellulose) to show the power of wide-angle X-ray scattering to characterize both intra- and intermolecular parameters of fibrous polymers. The latest possibilities offered in the X-ray scattering field allow one to study fibers at solid state or dispersed in solutions as well as to perform quantitative scanning X-ray microscopy of tissues entirely or partially made by fibers.
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11
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Terzi A, Gallo N, Bettini S, Sibillano T, Altamura D, Madaghiele M, De Caro L, Valli L, Salvatore L, Sannino A, Giannini C. Sub‐ and Supramolecular X‐Ray Characterization of Engineered Tissues from Equine Tendon, Bovine Dermis, and Fish Skin Type‐I Collagen. Macromol Biosci 2020; 20:e2000017. [DOI: 10.1002/mabi.202000017] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Accepted: 01/23/2020] [Indexed: 12/20/2022]
Affiliation(s)
- Alberta Terzi
- Institute of Crystallography (IC)National Research Council Bari 70126 Italy
| | - Nunzia Gallo
- Department of Engineering for InnovationUniversity of Salento Lecce 73100 Italy
| | - Simona Bettini
- Department of Engineering for InnovationUniversity of Salento Lecce 73100 Italy
| | - Teresa Sibillano
- Institute of Crystallography (IC)National Research Council Bari 70126 Italy
| | - Davide Altamura
- Institute of Crystallography (IC)National Research Council Bari 70126 Italy
| | - Marta Madaghiele
- Department of Engineering for InnovationUniversity of Salento Lecce 73100 Italy
| | - Liberato De Caro
- Institute of Crystallography (IC)National Research Council Bari 70126 Italy
| | - Ludovico Valli
- Department of Biological and Environmental Sciences and TechnologiesUniversity of Salento Lecce 73100 Italy
| | - Luca Salvatore
- Department of Engineering for InnovationUniversity of Salento Lecce 73100 Italy
| | - Alessandro Sannino
- Department of Engineering for InnovationUniversity of Salento Lecce 73100 Italy
| | - Cinzia Giannini
- Institute of Crystallography (IC)National Research Council Bari 70126 Italy
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12
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Procopio A, Malucelli E, Pacureanu A, Cappadone C, Farruggia G, Sargenti A, Castiglioni S, Altamura D, Sorrentino A, Giannini C, Pereiro E, Cloetens P, Maier JAM, Iotti S. Chemical Fingerprint of Zn-Hydroxyapatite in the Early Stages of Osteogenic Differentiation. ACS CENTRAL SCIENCE 2019; 5:1449-1460. [PMID: 31482128 PMCID: PMC6716342 DOI: 10.1021/acscentsci.9b00509] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2019] [Indexed: 06/01/2023]
Abstract
The core knowledge about biomineralization is provided by studies on the advanced phases of the process mainly occurring in the extracellular matrix. Here, we investigate the early stages of biomineralization by evaluating the chemical fingerprint of the initial mineral nuclei deposition in the intracellular milieu and their evolution toward hexagonal hydroxyapatite. The study is conducted on human bone mesenchymal stem cells exposed to an osteogenic cocktail for 4 and 10 days, exploiting laboratory X-ray diffraction techniques and cutting-edge developments of synchrotron-based 2D and 3D cryo-X-ray microscopy. We demonstrate that biomineralization starts with Zn-hydroxyapatite nucleation within the cell, rapidly evolving toward hexagonal hydroxyapatite crystals, very similar in composition and structure to the one present in human bone. These results provide experimental evidence of the germinal role of Zn in hydroxyapatite nucleation and foster further studies on the intracellular molecular mechanisms governing the initial phases of bone tissue formation.
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Affiliation(s)
- Alessandra Procopio
- Department of Pharmacy and Biotechnology, University of Bologna, Bologna 40127, Italy
| | - Emil Malucelli
- Department of Pharmacy and Biotechnology, University of Bologna, Bologna 40127, Italy
| | | | - Concettina Cappadone
- Department of Pharmacy and Biotechnology, University of Bologna, Bologna 40127, Italy
| | - Giovanna Farruggia
- Department of Pharmacy and Biotechnology, University of Bologna, Bologna 40127, Italy
- National Institute of Biostructures and Biosystems, Rome 00136, Italy
| | - Azzurra Sargenti
- Department of Pharmacy and Biotechnology, University of Bologna, Bologna 40127, Italy
| | - Sara Castiglioni
- Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan 20122, Italy
| | - Davide Altamura
- Institute of Crystallography, National Research Council, Bari 70126, Italy
| | - Andrea Sorrentino
- ALBA Synchrotron Light Source, Cerdanyola del Vallès, Barcelona 08290, Spain
| | - Cinzia Giannini
- Institute of Crystallography, National Research Council, Bari 70126, Italy
| | - Eva Pereiro
- ALBA Synchrotron Light Source, Cerdanyola del Vallès, Barcelona 08290, Spain
| | - Peter Cloetens
- ID16A Beamline, ESRF, the European Synchrotron, Grenoble 38043, France
| | - Jeanette A M Maier
- Department of Biomedical and Clinical Sciences L. Sacco, University of Milan, Milan 20122, Italy
| | - Stefano Iotti
- Department of Pharmacy and Biotechnology, University of Bologna, Bologna 40127, Italy
- National Institute of Biostructures and Biosystems, Rome 00136, Italy
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13
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Diaferia C, Balasco N, Altamura D, Sibillano T, Gallo E, Roviello V, Giannini C, Morelli G, Vitagliano L, Accardo A. Assembly modes of hexaphenylalanine variants as function of the charge states of their terminal ends. SOFT MATTER 2018; 14:8219-8230. [PMID: 30265271 DOI: 10.1039/c8sm01441h] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
The ability of peptides to self-assemble represents a valuable tool for the development of biomaterials of biotechnological and/or biomedical interest. Diphenylalanine homodimer (FF) and its analogues are among the most promising systems in this field. The longest Phe-based building block hitherto characterized is pentaphenylalanine (F5). We studied the aggregation propensity and the structural/morphological features of assemblies of zwitterionic hexaphenylalanine H+-F6-O- and of three variants characterized by different charged states of the terminal ends (Ac-F6-Amide, H+-F6-Amide and Ac-F6-O-). As previously observed for PEGylated hexaphenylalanine (PEG8-F6), all F6 variants show a strong tendency to form β-rich assemblies in which the structural motif is constituted by antiparallel β-strands in the cross-β framework. Extensive replica exchange molecular dynamics simulations carried out on a pairs of F6 peptides indicate that the antiparallel β-structure of the final assemblies is likely dictated by the preferred association modes of the individual chains in the very early stages of the aggregation process. Our data suggest that even very small F6 peptides are properly pre-organized and prone to the build-up of the final assembly.
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Affiliation(s)
- Carlo Diaferia
- Department of Pharmacy, Research Centre on Bioactive Peptides (CIRPeB), University of Naples "Federico II", Via Mezzocannone 16, 80134, Naples, Italy.
| | - Nicole Balasco
- Institute of Biostructures and Bioimaging (IBB), CNR, Via Mezzocannone 16, 80134, Naples, Italy
| | - Davide Altamura
- Institute of Crystallography (IC), CNR, Via Amendola 122, 70126, Bari, Italy
| | - Teresa Sibillano
- Institute of Crystallography (IC), CNR, Via Amendola 122, 70126, Bari, Italy
| | - Enrico Gallo
- Department of Pharmacy, Research Centre on Bioactive Peptides (CIRPeB), University of Naples "Federico II", Via Mezzocannone 16, 80134, Naples, Italy.
| | - Valentina Roviello
- Analytical Chemistry for the Environment and CeSMA (Advanced Metrologic Service Center), University of Naples "Federico II", Corso Nicolangelo Protopisani, 80146, Naples, Italy
| | - Cinzia Giannini
- Institute of Crystallography (IC), CNR, Via Amendola 122, 70126, Bari, Italy
| | - Giancarlo Morelli
- Department of Pharmacy, Research Centre on Bioactive Peptides (CIRPeB), University of Naples "Federico II", Via Mezzocannone 16, 80134, Naples, Italy.
| | - Luigi Vitagliano
- Institute of Biostructures and Bioimaging (IBB), CNR, Via Mezzocannone 16, 80134, Naples, Italy
| | - Antonella Accardo
- Department of Pharmacy, Research Centre on Bioactive Peptides (CIRPeB), University of Naples "Federico II", Via Mezzocannone 16, 80134, Naples, Italy.
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14
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Lutz-Bueno V, Arboleda C, Leu L, Blunt MJ, Busch A, Georgiadis A, Bertier P, Schmatz J, Varga Z, Villanueva-Perez P, Wang Z, Lebugle M, David C, Stampanoni M, Diaz A, Guizar-Sicairos M, Menzel A. Model-free classification of X-ray scattering signals applied to image segmentation. J Appl Crystallogr 2018; 51:1378-1386. [PMID: 30279640 PMCID: PMC6157705 DOI: 10.1107/s1600576718011032] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2018] [Accepted: 08/02/2018] [Indexed: 11/17/2022] Open
Abstract
This article describes a modeling framework to relate the molecular orientation of nanostructures to polarized resonant soft X-ray scattering measurements using the Born approximation and a full tensor treatment. In most cases, the analysis of small-angle and wide-angle X-ray scattering (SAXS and WAXS, respectively) requires a theoretical model to describe the sample’s scattering, complicating the interpretation of the scattering resulting from complex heterogeneous samples. This is the reason why, in general, the analysis of a large number of scattering patterns, such as are generated by time-resolved and scanning methods, remains challenging. Here, a model-free classification method to separate SAXS/WAXS signals on the basis of their inflection points is introduced and demonstrated. This article focuses on the segmentation of scanning SAXS/WAXS maps for which each pixel corresponds to an azimuthally integrated scattering curve. In such a way, the sample composition distribution can be segmented through signal classification without applying a model or previous sample knowledge. Dimensionality reduction and clustering algorithms are employed to classify SAXS/WAXS signals according to their similarity. The number of clusters, i.e. the main sample regions detected by SAXS/WAXS signal similarity, is automatically estimated. From each cluster, a main representative SAXS/WAXS signal is extracted to uncover the spatial distribution of the mixtures of phases that form the sample. As examples of applications, a mudrock sample and two breast tissue lesions are segmented.
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Affiliation(s)
- V Lutz-Bueno
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
| | - C Arboleda
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland.,ETH Zurich, 8092 Zurich, Switzerland
| | - L Leu
- Department of Earth Science and Engineering, Imperial College London, London SW7 2BP, UK.,Shell Global Solutions International B.V., 2288 GS, Rijswijk, The Netherlands
| | - M J Blunt
- Department of Earth Science and Engineering, Imperial College London, London SW7 2BP, UK
| | - A Busch
- Lyell Centre for Marine and Earth Science and Technology, Heriot-Watt University, Edinburgh EH14 4AP, UK
| | - A Georgiadis
- Shell Global Solutions International B.V., 2288 GS, Rijswijk, The Netherlands.,Department of Chemical Engineering, Imperial College London, London SW7 2BP, UK
| | - P Bertier
- Clay and Interface Mineralogy, RWTH Aachen, 52062 Aachen, Germany
| | - J Schmatz
- Microstructure and Pores GmbH, 52064 Aachen, Germany
| | - Z Varga
- Institute of Pathology and Molecular Pathology, University Hospital Zurich, 8092 Zurich, Switzerland
| | - P Villanueva-Perez
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland.,Deutsches Elektronen-Synchrotron, Center for Free-Electron Laser Science, 22607 Hamburg, Germany
| | - Z Wang
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland.,ETH Zurich, 8092 Zurich, Switzerland
| | - M Lebugle
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
| | - C David
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
| | - M Stampanoni
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland.,ETH Zurich, 8092 Zurich, Switzerland
| | - A Diaz
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
| | | | - A Menzel
- Paul Scherrer Institut, 5232 Villigen PSI, Switzerland
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15
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Diaferia C, Balasco N, Sibillano T, Ghosh M, Adler-Abramovich L, Giannini C, Vitagliano L, Morelli G, Accardo A. Amyloid-Like Fibrillary Morphology Originated by Tyrosine-Containing Aromatic Hexapeptides. Chemistry 2018; 24:6804-6817. [PMID: 29504716 DOI: 10.1002/chem.201800351] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Indexed: 01/04/2023]
Abstract
Phenylalanine-based nanostructures have attracted the attention of the material science community for their functional properties. These properties strongly depend on the hierarchic organization of the nanostructure that in turn can be finely tuned by punctual chemical modifications of the building blocks. Herein, we investigate how the partial or the complete replacement of the Phe residues in PEG8 -(Phe)6 (PEG8 -F6) with tyrosines to generate PEG8 -(Phe-Tyr)3 (PEG8 -(FY)3) or PEG8 -(Tyr)6 (PEG8 -Y6) affects the structural/functional properties of the nanomaterial formed by the parental compound. Moreover, the effect of the PEG derivatization was evaluated through the characterization of the peptides without the PEG moiety (Tyr)6 (Y6) and (Phe-Tyr)3 ((FY)3). Both PEG8 -Y6 and PEG8 -(FY)3 can self-assemble in water at micromolar concentrations in β-sheet-rich nanostructures. However, WAXS diffraction patterns of these compounds present significant differences. PEG8 -(FY)3 shows a 2D WAXS oriented fiber diffraction profile characterized by the concomitant presence of a 4.7 Å meridional and a 12.5 Å equatorial reflection that are generally associated with cross-β structure. On the other hand, the pattern of PEG8 -Y6 is characterized by the presence of circles typically observed in the presence of PEG crystallization. Molecular modeling and dynamics provide an atomic structural model of the peptide spine of these compounds that is in good agreement with WAXS experimental data. Gelation phenomenon was only detected for PEG8 -(FY)3 above a concentration of 1.0 wt % as confirmed by storage (G'≈100 Pa) and loss (G''≈28 Pa) moduli in rheological studies. The cell viability on CHO cells of this soft hydrogel was certified to be 90 % after 24 hours of incubation.
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Affiliation(s)
- Carlo Diaferia
- Department of Pharmacy, Research Centre on Bioactive Peptides (CIRPeB), University of Naples "Federico II" and DFM Scarl, Via Mezzocannone 16, 80134, Naples, Italy
| | - Nicole Balasco
- Institute of Biostructures and Bioimaging (IBB), CNR, Via Mezzocannone 16, 80134, Naples, Italy
| | - Teresa Sibillano
- Institute of Crystallography (IC), CNR, Via Amendola 122, 70126, Bari, Italy
| | - Moumita Ghosh
- Department of Oral Biology, The Goldschleger School of Dental Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, 69978, Israel
| | - Lihi Adler-Abramovich
- Department of Oral Biology, The Goldschleger School of Dental Medicine, Sackler Faculty of Medicine, Tel Aviv University, Tel Aviv, 69978, Israel
| | - Cinzia Giannini
- Institute of Crystallography (IC), CNR, Via Amendola 122, 70126, Bari, Italy
| | - Luigi Vitagliano
- Institute of Biostructures and Bioimaging (IBB), CNR, Via Mezzocannone 16, 80134, Naples, Italy
| | - Giancarlo Morelli
- Department of Pharmacy, Research Centre on Bioactive Peptides (CIRPeB), University of Naples "Federico II" and DFM Scarl, Via Mezzocannone 16, 80134, Naples, Italy
| | - Antonella Accardo
- Department of Pharmacy, Research Centre on Bioactive Peptides (CIRPeB), University of Naples "Federico II" and DFM Scarl, Via Mezzocannone 16, 80134, Naples, Italy
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16
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Diaferia C, Balasco N, Sibillano T, Giannini C, Vitagliano L, Morelli G, Accardo A. Structural Characterization of Self-Assembled Tetra-Tryptophan Based Nanostructures: Variations on a Common Theme. Chemphyschem 2018. [PMID: 29542851 DOI: 10.1002/cphc.201800026] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Over the years, a large number of multidisciplinary investigations has unveiled that the self-assembly of short peptides and even of individual amino acids can generate a variety of different biomaterials. In this framework, we have recently reported that polyethylene glycol (PEG) conjugates of short homopeptides, containing aromatic amino acids such as phenylalanine (Phe, F) and naphthylalanine (Nal), are able to form elongated fibrillary aggregates having interesting chemical and physical properties. We here extend these analyses characterizing the self-assembling propensity of PEG6 -W4, a PEG adduct of the tetra-tryptophan (W4) sequence. A comprehensive structural characterization of PEG6 -W4 was obtained, both in solution and at the solid state, through the combination of spectroscopic, microscopic, X-ray scattering and computational techniques. Collectively, these studies demonstrate that this peptide is able to self-assemble in fibrillary networks characterized by a cross β-structure spine. The present findings clearly demonstrate that aromatic residues display a general propensity to induce self-aggregation phenomenon, despite the significant differences in the physicochemical properties of their side chains.
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Affiliation(s)
- Carlo Diaferia
- Department of Pharmacy, Research Centre on Bioactive Peptides (CIRPeB), University of Naples "Federico II", Via Mezzocannone 16, 80134-, Naples, Italy
| | - Nicole Balasco
- Institute of Biostructures and Bioimaging (IBB), CNR, via Mezzocannone 16, 80134, Naples (Italy
| | - Teresa Sibillano
- Institute of Crystallography (IC), CNR, Via Amendola 122, 70126, Bari, Italy
| | - Cinzia Giannini
- Institute of Crystallography (IC), CNR, Via Amendola 122, 70126, Bari, Italy
| | - Luigi Vitagliano
- Institute of Biostructures and Bioimaging (IBB), CNR, via Mezzocannone 16, 80134, Naples (Italy
| | - Giancarlo Morelli
- Department of Pharmacy, Research Centre on Bioactive Peptides (CIRPeB), University of Naples "Federico II", Via Mezzocannone 16, 80134-, Naples, Italy
| | - Antonella Accardo
- Department of Pharmacy, Research Centre on Bioactive Peptides (CIRPeB), University of Naples "Federico II", Via Mezzocannone 16, 80134-, Naples, Italy
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