1
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Hackett JC, Krueger S, Urban VS, Zárate-Pérez F. Small angle scattering reveals the orientation of cytochrome P450 19A1 in lipoprotein nanodiscs. J Inorg Biochem 2024; 257:112579. [PMID: 38703512 DOI: 10.1016/j.jinorgbio.2024.112579] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2024] [Revised: 04/18/2024] [Accepted: 04/25/2024] [Indexed: 05/06/2024]
Abstract
Human aromatase (CYP19A1), the cytochrome P450 enzyme responsible for conversion of androgens to estrogens, was incorporated into lipoprotein nanodiscs (NDs) and interrogated by small angle X-ray and neutron scattering (SAXS/SANS). CYP19A1 was associated with the surface and centered at the edge of the long axis of the ND membrane. In the absence of the N-terminal anchor, the amphipathic A'- and G'-helices were predominately buried in the lipid head groups, with the possibly that their hydrophobic side chains protrude into the hydrophobic, aliphatic tails. The prediction is like that for CYP3A4 based on SAXS employing a similar modeling approach. The orientation of CYP19A1 in a ND is consistent with our previous predictions based on molecular dynamics simulations and lends additional credibility to the notion that CYP19A1 captures substrates from the membrane.
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Affiliation(s)
- John C Hackett
- Department of Chemistry and Biochemistry and the Biomolecular Sciences Institute, Florida International University, Miami, FL 33199, United States.
| | - Susan Krueger
- National Institute of Standards and Technology Center for Neutron Research, Gaithersburg, MD 20899, United States; Department of Materials Science and Engineering, University of Maryland, College Park, MD 20742, United States
| | - Volker S Urban
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, United States
| | - Francisco Zárate-Pérez
- Department of Chemistry and Biochemistry and the Biomolecular Sciences Institute, Florida International University, Miami, FL 33199, United States
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2
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Wang Y, Patil S, Cheng S, Do C. The influence of elongation-induced concentration fluctuations on segmental friction in polymer blends. SOFT MATTER 2024; 20:4257-4269. [PMID: 38757213 DOI: 10.1039/d4sm00219a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
Recent experimental studies have revealed a lack of universality in the extensional behavior of linear polymers, which is not envisioned by classical molecular theories. These surprising findings, particularly the sharp contrast between polymer melts and solutions, have catalyzed the development of new theoretical ideas, including the concept of friction reduction in highly stretched polymer melts. By presenting evidence from rheology and small-angle neutron scattering, this work shows that deformation-induced demixing, which is due to the viscoelastic asymmetry in binary mixtures, contributes to the observed nonuniversality. In the case of polystyrene/oligostyrene blends, demixing increases the effective glass transition temperature of the long chain, leading to an apparent friction enhancement. On the other hand, the opposite case is found for the polystyrene/poly(α-methylstyrene) blend. These results highlight the important influence of deformation-induced concentration fluctuations on polymer segmental friction.
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Affiliation(s)
- Yangyang Wang
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA.
| | - Shalin Patil
- Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI 48824, USA.
| | - Shiwang Cheng
- Department of Chemical Engineering and Materials Science, Michigan State University, East Lansing, MI 48824, USA.
| | - Changwoo Do
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
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3
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Hernández‐Sánchez I, Rindfleisch T, Alpers J, Dulle M, Garvey CJ, Knox‐Brown P, Miettinen MS, Nagy G, Pusterla JM, Rekas A, Shou K, Stadler AM, Walther D, Wolff M, Zuther E, Thalhammer A. Functional in vitro diversity of an intrinsically disordered plant protein during freeze-thawing is encoded by its structural plasticity. Protein Sci 2024; 33:e4989. [PMID: 38659213 PMCID: PMC11043620 DOI: 10.1002/pro.4989] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 03/09/2024] [Accepted: 03/31/2024] [Indexed: 04/26/2024]
Abstract
Intrinsically disordered late embryogenesis abundant (LEA) proteins play a central role in the tolerance of plants and other organisms to dehydration brought upon, for example, by freezing temperatures, high salt concentration, drought or desiccation, and many LEA proteins have been found to stabilize dehydration-sensitive cellular structures. Their conformational ensembles are highly sensitive to the environment, allowing them to undergo conformational changes and adopt ordered secondary and quaternary structures and to participate in formation of membraneless organelles. In an interdisciplinary approach, we discovered how the functional diversity of the Arabidopsis thaliana LEA protein COR15A found in vitro is encoded in its structural repertoire, with the stabilization of membranes being achieved at the level of secondary structure and the stabilization of enzymes accomplished by the formation of oligomeric complexes. We provide molecular details on intra- and inter-monomeric helix-helix interactions, demonstrate how oligomerization is driven by an α-helical molecular recognition feature (α-MoRF) and provide a rationale that the formation of noncanonical, loosely packed, right-handed coiled-coils might be a recurring theme for homo- and hetero-oligomerization of LEA proteins.
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Affiliation(s)
- Itzell Hernández‐Sánchez
- Max‐Planck Institute of Molecular Plant PhysiologyPotsdamGermany
- Present address:
Center for Desert Agriculture, Biological and Environmental Science and Engineering DivisionKing Abdullah University of Science and Technology (KAUST)ThuwalSaudi Arabia
| | - Tobias Rindfleisch
- Max‐Planck Institute of Molecular Plant PhysiologyPotsdamGermany
- Physical BiochemistryUniversity of PotsdamPotsdamGermany
- Department of ChemistryUniversity of BergenBergenNorway
- Computational Biology Unit, Department of InformaticsUniversity of BergenBergenNorway
| | - Jessica Alpers
- Max‐Planck Institute of Molecular Plant PhysiologyPotsdamGermany
| | - Martin Dulle
- Jülich Centre for Neutron Science (JCNS‐1) and Institute of Biological Information Processing (IBI‐8: Neutron Scattering and Biological Matter)Forschungszentrum Jülich GmbHJülichGermany
| | | | - Patrick Knox‐Brown
- Physical BiochemistryUniversity of PotsdamPotsdamGermany
- Present address:
Department of Discovery Pharmaceutical SciencesMerck & Co., Inc.South San FranciscoCaliforniaUSA
| | - Markus S. Miettinen
- Department of ChemistryUniversity of BergenBergenNorway
- Computational Biology Unit, Department of InformaticsUniversity of BergenBergenNorway
- Department of Theory and Bio‐SystemsMax Planck Institute of Colloids and InterfacesPotsdamGermany
| | - Gergely Nagy
- Neutron Scattering DivisionOak Ridge National LaboratoryOak RidgeTennesseeUSA
| | - Julio M. Pusterla
- Jülich Centre for Neutron Science (JCNS‐1) and Institute of Biological Information Processing (IBI‐8: Neutron Scattering and Biological Matter)Forschungszentrum Jülich GmbHJülichGermany
| | - Agata Rekas
- Australian Nuclear Science and Technology Organization (ANSTO)KirraweeNew South WalesAustralia
| | - Keyun Shou
- Jülich Centre for Neutron Science (JCNS‐1) and Institute of Biological Information Processing (IBI‐8: Neutron Scattering and Biological Matter)Forschungszentrum Jülich GmbHJülichGermany
- Australian Nuclear Science and Technology Organization (ANSTO)KirraweeNew South WalesAustralia
- Institute of Physical Chemistry, RWTH Aachen UniversityAachenGermany
| | - Andreas M. Stadler
- Jülich Centre for Neutron Science (JCNS‐1) and Institute of Biological Information Processing (IBI‐8: Neutron Scattering and Biological Matter)Forschungszentrum Jülich GmbHJülichGermany
- Institute of Physical Chemistry, RWTH Aachen UniversityAachenGermany
| | - Dirk Walther
- Max‐Planck Institute of Molecular Plant PhysiologyPotsdamGermany
| | - Martin Wolff
- Physical BiochemistryUniversity of PotsdamPotsdamGermany
| | - Ellen Zuther
- Max‐Planck Institute of Molecular Plant PhysiologyPotsdamGermany
- Present address:
Center of Artificial Intelligence in Public Health Research (ZKI‐PH)Robert Koch InstituteBerlinGermany
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4
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Dar F, Cohen SR, Mitrea DM, Phillips AH, Nagy G, Leite WC, Stanley CB, Choi JM, Kriwacki RW, Pappu RV. Biomolecular condensates form spatially inhomogeneous network fluids. Nat Commun 2024; 15:3413. [PMID: 38649740 PMCID: PMC11035652 DOI: 10.1038/s41467-024-47602-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2023] [Accepted: 04/05/2024] [Indexed: 04/25/2024] Open
Abstract
The functions of biomolecular condensates are thought to be influenced by their material properties, and these will be determined by the internal organization of molecules within condensates. However, structural characterizations of condensates are challenging, and rarely reported. Here, we deploy a combination of small angle neutron scattering, fluorescence recovery after photobleaching, and coarse-grained molecular dynamics simulations to provide structural descriptions of model condensates that are formed by macromolecules from nucleolar granular components (GCs). We show that these minimal facsimiles of GCs form condensates that are network fluids featuring spatial inhomogeneities across different length scales that reflect the contributions of distinct protein and peptide domains. The network-like inhomogeneous organization is characterized by a coexistence of liquid- and gas-like macromolecular densities that engenders bimodality of internal molecular dynamics. These insights suggest that condensates formed by multivalent proteins share features with network fluids formed by systems such as patchy or hairy colloids.
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Affiliation(s)
- Furqan Dar
- Department of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, St. Louis, MO, 63130, USA
| | - Samuel R Cohen
- Department of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, St. Louis, MO, 63130, USA
- Center of Regenerative Medicine, Washington University in St. Louis, St. Louis, MO, 63130, USA
| | - Diana M Mitrea
- Dewpoint Therapeutics Inc., 451 D Street, Boston, MA, 02210, USA
| | - Aaron H Phillips
- Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA
| | - Gergely Nagy
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Wellington C Leite
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Christopher B Stanley
- Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37830, USA
| | - Jeong-Mo Choi
- Department of Chemistry and Chemistry Institute for Functional Materials, Pusan National University, Busan, 46241, Republic of Korea.
| | - Richard W Kriwacki
- Department of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN, 38105, USA.
| | - Rohit V Pappu
- Department of Biomedical Engineering and Center for Biomolecular Condensates, Washington University in St. Louis, St. Louis, MO, 63130, USA.
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5
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Lyu X, Wang H, Liu X, He L, Do C, Seifert S, Winans RE, Cheng L, Li T. Solvation Structure of Methanol-in-Salt Electrolyte Revealed by Small-Angle X-ray Scattering and Simulations. ACS NANO 2024; 18:7037-7045. [PMID: 38373167 DOI: 10.1021/acsnano.3c10469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
Abstract
The solvation structure of water-in-salt electrolytes was thoroughly studied, and two competing structures─anion solvated structure and anion network─were well-defined in recent publications. To further reveal the solvation structure in those highly concentrated electrolytes, particularly the influence of solvent, methanol was chosen as the solvent for this proposed study. In this work, small-angle X-ray scattering, small-angle neutron scattering, Fourier-transform infrared spectroscopy, and Raman spectroscopy were utilized to obtain the global and local structural information. With the concentration increment, the anion network formed by TFSI- became the dominant structure. Meanwhile, the hydrogen bonds among methanol were interrupted by the TFSI- anion and formed a new connection with them. Molecular dynamic simulations with two different force fields (GAFF and OPLS-AA) are tested, and GAFF agreed with synchrotron small-angle X-ray scattering/wide-angle X-ray scattering (SAXS/WAXS) results well and provided insightful information about molecular/ion scale solvation structure. This article not only deepens the understanding of the solvation structure in highly concentrated solutions, but more importantly, it provides additional strong evidence for utilizing SAXS/WAXS to validate molecular dynamics simulations.
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Affiliation(s)
- Xingyi Lyu
- Department of Chemistry and Biochemistry, Northern Illinois University, DeKalb, Illinois 60115, United States
| | - Haimeng Wang
- Materials Science Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Xinyi Liu
- Department of Chemistry and Biochemistry, Northern Illinois University, DeKalb, Illinois 60115, United States
| | - Lilin He
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Changwoo Do
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Soenke Seifert
- X-ray Science Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Randall E Winans
- X-ray Science Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Lei Cheng
- Materials Science Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Tao Li
- Department of Chemistry and Biochemistry, Northern Illinois University, DeKalb, Illinois 60115, United States
- X-ray Science Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
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6
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Dar F, Cohen SR, Mitrea DM, Phillips AH, Nagy G, Leite WC, Stanley CB, Choi JM, Kriwacki RW, Pappu RV. Biomolecular condensates form spatially inhomogeneous network fluids. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.10.07.561338. [PMID: 37873180 PMCID: PMC10592670 DOI: 10.1101/2023.10.07.561338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
The functions of biomolecular condensates are thought to be influenced by their material properties, and these will be determined by the internal organization of molecules within condensates. However, structural characterizations of condensates are challenging, and rarely reported. Here, we deploy a combination of small angle neutron scattering, fluorescence recovery after photobleaching, and coarse-grained molecular dynamics simulations to provide structural descriptions of model condensates that are formed by macromolecules from nucleolar granular components (GCs). We show that these minimal facsimiles of GCs form condensates that are network fluids featuring spatial inhomogeneities across different length scales that reflect the contributions of distinct protein and peptide domains. The network-like inhomogeneous organization is characterized by a coexistence of liquid- and gas-like macromolecular densities that engenders bimodality of internal molecular dynamics. These insights suggest that condensates formed by multivalent proteins share features with network fluids formed by systems such as patchy or hairy colloids.
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7
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Vargo E, Ma L, Li H, Zhang Q, Kwon J, Evans KM, Tang X, Tovmasyan VL, Jan J, Arias AC, Destaillats H, Kuzmenko I, Ilavsky J, Chen WR, Heller W, Ritchie RO, Liu Y, Xu T. Functional composites by programming entropy-driven nanosheet growth. Nature 2023; 623:724-731. [PMID: 37938779 DOI: 10.1038/s41586-023-06660-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 09/20/2023] [Indexed: 11/09/2023]
Abstract
Nanomaterials must be systematically designed to be technologically viable1-5. Driven by optimizing intermolecular interactions, current designs are too rigid to plug in new chemical functionalities and cannot mitigate condition differences during integration6,7. Despite extensive optimization of building blocks and treatments, accessing nanostructures with the required feature sizes and chemistries is difficult. Programming their growth across the nano-to-macro hierarchy also remains challenging, if not impossible8-13. To address these limitations, we should shift to entropy-driven assemblies to gain design flexibility, as seen in high-entropy alloys, and program nanomaterial growth to kinetically match target feature sizes to the mobility of the system during processing14-17. Here, following a micro-then-nano growth sequence in ternary composite blends composed of block-copolymer-based supramolecules, small molecules and nanoparticles, we successfully fabricate high-performance barrier materials composed of more than 200 stacked nanosheets (125 nm sheet thickness) with a defect density less than 0.056 µm-2 and about 98% efficiency in controlling the defect type. Contrary to common perception, polymer-chain entanglements are advantageous to realize long-range order, accelerate the fabrication process (<30 min) and satisfy specific requirements to advance multilayered film technology3,4,18. This study showcases the feasibility, necessity and unlimited opportunities to transform laboratory nanoscience into nanotechnology through systems engineering of self-assembly.
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Affiliation(s)
- Emma Vargo
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Le Ma
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - He Li
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Qingteng Zhang
- X-ray Science Division, Argonne National Laboratory, Lemont, IL, USA
| | - Junpyo Kwon
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Mechanical Engineering, University of California, Berkeley, Berkeley, CA, USA
| | - Katherine M Evans
- Department of Chemistry, University of California, Berkeley, Berkeley, CA, USA
| | - Xiaochen Tang
- Energy Technologies Area, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Victoria L Tovmasyan
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA, USA
| | - Jasmine Jan
- Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, Berkeley, CA, USA
| | - Ana C Arias
- Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, Berkeley, CA, USA
| | - Hugo Destaillats
- Energy Technologies Area, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Ivan Kuzmenko
- X-ray Science Division, Argonne National Laboratory, Lemont, IL, USA
| | - Jan Ilavsky
- X-ray Science Division, Argonne National Laboratory, Lemont, IL, USA
| | - Wei-Ren Chen
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - William Heller
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - Robert O Ritchie
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- Department of Mechanical Engineering, University of California, Berkeley, Berkeley, CA, USA
| | - Yi Liu
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
- The Molecular Foundry, Lawrence Berkeley National Laboratory, Berkeley, CA, USA
| | - Ting Xu
- Department of Materials Science and Engineering, University of California, Berkeley, Berkeley, CA, USA.
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
- Department of Chemistry, University of California, Berkeley, Berkeley, CA, USA.
- Kavli Energy NanoScience Institute, Berkeley, CA, USA.
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8
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Contreras-Montoya R, Smith JP, Boothroyd SC, Aguilar JA, Mirzamani M, Screen MA, Yufit DS, Robertson M, He L, Qian S, Kumari H, Steed JW. Pathway complexity in fibre assembly: from liquid crystals to hyper-helical gelmorphs. Chem Sci 2023; 14:11389-11401. [PMID: 37886106 PMCID: PMC10599479 DOI: 10.1039/d3sc03841f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 09/25/2023] [Indexed: 10/28/2023] Open
Abstract
Pathway complexity results in unique materials from the same components according to the assembly conditions. Here a chiral acyl-semicarbazide gelator forms three different gels of contrasting fibre morphology (termed 'gelmorphs') as well as lyotropic liquid crystalline droplets depending on the assembly pathway. The gels have morphologies that are either hyperhelical (HH-Gel), tape-fibre (TF-Gel) or thin fibril derived from the liquid crystalline phase (LC-Gels) and exhibit very different rheological properties. The gelator exists as three slowly interconverting conformers in solution. All three gels are comprised of an unsymmetrical, intramolecular hydrogen bonded conformer. The kinetics show that formation of the remarkable HH-Gel is cooperative and is postulated to involve association of the growing fibril with a non-gelling conformer. This single molecule dynamic conformational library shows how very different materials with different morphology and hence very contrasting materials properties can arise from pathway complexity as a result of emergent interactions during the assembly process.
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Affiliation(s)
| | - James P Smith
- Department of Chemistry, Durham University Durham DH1 3LE UK
| | | | - Juan A Aguilar
- Department of Chemistry, Durham University Durham DH1 3LE UK
| | - Marzieh Mirzamani
- James L. Winkle College of Pharmacy, University of Cincinnati 231 Albert Sabin Way, Medical Science Building 3109C Cincinnati OH 45267-0514 USA
| | - Martin A Screen
- Department of Chemistry, Durham University Durham DH1 3LE UK
| | - Dmitry S Yufit
- Department of Chemistry, Durham University Durham DH1 3LE UK
| | - Mark Robertson
- School of Polymer Science and Engineering, University of Southern Mississippi 118 College Dr. Hattiesburg MS 39406 USA
| | - Lilin He
- Neutron Scattering Division, Oak Ridge National Laboratory 1 Bethel Valley Rd. Oak Ridge TN 37831 USA
| | - Shuo Qian
- Neutron Scattering Division, Oak Ridge National Laboratory 1 Bethel Valley Rd. Oak Ridge TN 37831 USA
| | - Harshita Kumari
- James L. Winkle College of Pharmacy, University of Cincinnati 231 Albert Sabin Way, Medical Science Building 3109C Cincinnati OH 45267-0514 USA
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9
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Cao Z, Tolba SA, Li Z, Mason GT, Wang Y, Do C, Rondeau-Gagné S, Xia W, Gu X. Molecular Structure and Conformational Design of Donor-Acceptor Conjugated Polymers to Enable Predictable Optoelectronic Property. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2302178. [PMID: 37318244 DOI: 10.1002/adma.202302178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 06/02/2023] [Indexed: 06/16/2023]
Abstract
Tuning the optoelectronic properties of donor-acceptor conjugated polymers (D-A CPs) is of great importance in designing various organic optoelectronic devices. However, there remains a critical challenge in precise control of bandgap through synthetic approach, since the chain conformation also affects molecular orbital energy levels. Here, D-A CPs with different acceptor units are explored that show an opposite trend in energy band gaps with the increasing length of oligothiophene donor units. By investigating their chain conformation and molecular orbital energy, it is found that the molecular orbital energy alignment between donor and acceptor units plays a crucial role in dictating the final optical bandgap of D-A CPs. For polymers with staggered orbital energy alignment, the higher HOMO with increasing oligothiophene length leads to a narrowing of the optical bandgap despite decreased chain rigidity. On the other hand, for polymers with sandwiched orbital energy alignment, the increased band gap with increasing oligothiophene length originates from the reduction of bandwidth due to more localized charge density distribution. Thus, this work provides a molecular understanding of the role of backbone building blocks on the chain conformation and bandgaps of D-A CPs for organic optoelectronic devices through the conformation design and segment orbital energy alignment.
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Affiliation(s)
- Zhiqiang Cao
- School of Polymer Science and Engineering, Center for Optoelectronic Materials and Devices, The University of Southern Mississippi, Hattiesburg, MS, 39406, USA
| | - Sara A Tolba
- Materials and Nanotechnology Program, North Dakota State University, Fargo, ND, 58108, USA
| | - Zhaofan Li
- Department of Civil, Construction, and Environmental Engineering, North Dakota State University, Fargo, ND, 58108, USA
| | - Gage T Mason
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, Ontario, N9B3P4, Canada
| | - Yang Wang
- School of Materials Science and Engineering, University of Science and Technology Beijing, Beijing, 100083, P. R. China
| | - Changwoo Do
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA
| | - Simon Rondeau-Gagné
- Department of Chemistry and Biochemistry, University of Windsor, Windsor, Ontario, N9B3P4, Canada
| | - Wenjie Xia
- Department of Civil, Construction, and Environmental Engineering, North Dakota State University, Fargo, ND, 58108, USA
- Department of Aerospace Engineering, Iowa State University, Ames, IA, 50011, USA
| | - Xiaodan Gu
- School of Polymer Science and Engineering, Center for Optoelectronic Materials and Devices, The University of Southern Mississippi, Hattiesburg, MS, 39406, USA
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10
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Heller WT. Small-Angle Neutron Scattering Study of a Phosphatidylcholine-Phosphatidylethanolamine Mixture. ACS OMEGA 2023; 8:33755-33762. [PMID: 37744859 PMCID: PMC10515593 DOI: 10.1021/acsomega.3c04164] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Accepted: 08/23/2023] [Indexed: 09/26/2023]
Abstract
The properties of single-component phospholipid lipid bilayers have been extensively characterized. Natural cell membranes are not so simple, consisting of a diverse mixture of lipids and proteins. While having detailed structural information on complex membranes would be useful for understanding their structure and function, experimentally characterizing such membranes at a level of detail applied to model phospholipid bilayers is challenging. Here, small-angle neutron scattering with selective deuteration was used to characterize a binary lipid mixture composed of 1,2-dimyristoyl-3-sn-glycero-phosphatidylcholine and 1,2-dimyristoyl-3-sn-glycero-phosphatidylethanolamine. The data analysis provided the area per lipid in each leaflet as well as the asymmetry of the composition of the inner and outer leaflets of the bilayer. The results provide new insight into the structure of the lipid bilayer when this lipid mixture is used to prepare vesicles.
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Affiliation(s)
- William T. Heller
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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11
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Rao A, Olsen BD. Structural and dynamic heterogeneity in associative networks formed by artificially engineered protein polymers. SOFT MATTER 2023; 19:6314-6328. [PMID: 37560814 DOI: 10.1039/d3sm00150d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/11/2023]
Abstract
This work investigates static gel structure and cooperative multi-chain motion in associative networks using a well-defined model system composed of artificial coiled-coil proteins. The combination of small-angle and ultra-small-angle neutron scattering provides evidence for three static length scales irrespective of protein gel design which are attributed to correlations arising from the blob length, inter-junction spacing, and multi-chain density fluctuations. Self-diffusion measurements using forced Rayleigh scattering demonstrate an apparent superdiffusive regime in all gels studied, reflecting a transition between distinct "slow" and "fast" diffusive species. The interconversion between the two diffusive modes occurs on a length scale on the order of the largest correlation length observed by neutron scattering, suggesting a possible caging effect. Comparison of the self-diffusive behavior with characteristic molecular length scales and the single-sticker dissociation time inferred from tracer diffusion measurements supports the primarily single-chain mechanisms of self-diffusion as previously conceptualized. The step size of the slow mode is comparable to the root-mean-square length of the midblock strands, consistent with a single-chain walking mode rather than collective motion of multi-chain aggregates. The transition to the fast mode occurs on a timescale 10-1000 times the single-sticker dissociation time, which is consistent with the onset of single-molecule hopping. Finally, the terminal diffusivity depends exponentially on the number of stickers per chain, further suggesting that long-range diffusion occurs by molecular hopping rather than sticky Rouse motion of larger assemblies. Collectively, the results suggest that diffusion of multi-chain clusters is dominated by the single-chain pictures proposed in previous coarse-grained modeling.
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Affiliation(s)
- Ameya Rao
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
| | - Bradley D Olsen
- Department of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
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12
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Gutfreund P, Higy C, Fragneto G, Tschopp M, Felix O, Decher G. Molecular conformation of polyelectrolytes inside Layer-by-Layer assembled films. Nat Commun 2023; 14:4076. [PMID: 37429844 DOI: 10.1038/s41467-023-39801-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Accepted: 06/29/2023] [Indexed: 07/12/2023] Open
Abstract
Among all methods available for the preparation of multifunctional nanostructured composite materials with remarkable functional properties, Layer-by-Layer (LbL) assembly is currently one of the most widely used techniques due to its environmental friendliness, its ease of use and its versatility in combining a plethora of available colloids and macromolecules into finely tuned multicomponent architectures with nanometer scale control. Despite the importance of these systems in emerging technologies, their nanoscopic 3D structure, and thus the ability to predict and understand the device performance, is still largely unknown. In this article, we use neutron scattering to determine the average conformation of individual deuterated polyelectrolyte chains inside LbL assembled films. In particular, we determine that in LbL-films composed of poly(sodium 4-styrenesulfonate) (PSS) and poly(allylamine hydrochloride) (PAH) multilayers prepared from 2 M sodium chloride solutions the PSS chains exhibit a flattened coil conformation with an asymmetry factor of around seven. Albeit this highly non-equilibrium state of the polymer chain, its density profiles follow Gaussian distributions occupying roughly the same volume as in the bulk complex.
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Affiliation(s)
- Philipp Gutfreund
- Institut Laue-Langevin, 71 avenue des Martyrs, 38042, Grenoble, France.
| | - Christophe Higy
- Institut Laue-Langevin, 71 avenue des Martyrs, 38042, Grenoble, France
- Institut Charles Sadron, Université de Strasbourg, 67034, Strasbourg, France
| | - Giovanna Fragneto
- Institut Laue-Langevin, 71 avenue des Martyrs, 38042, Grenoble, France
- European Spallation Source ERIC, P.O. Box 176, 22100, Lund, Sweden
| | - Michel Tschopp
- Institut Charles Sadron, Université de Strasbourg, 67034, Strasbourg, France
| | - Olivier Felix
- Institut Charles Sadron, Université de Strasbourg, 67034, Strasbourg, France
| | - Gero Decher
- Institut Charles Sadron, Université de Strasbourg, 67034, Strasbourg, France
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13
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Shi B, Matsui T, Qian S, Weiss TM, Nicholl ID, Callaway DJE, Bu Z. An ensemble of cadherin-catenin-vinculin complex employs vinculin as the major F-actin binding mode. Biophys J 2023; 122:2456-2474. [PMID: 37147801 PMCID: PMC10323030 DOI: 10.1016/j.bpj.2023.04.026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2022] [Revised: 02/14/2023] [Accepted: 04/27/2023] [Indexed: 05/07/2023] Open
Abstract
The cell-cell adhesion cadherin-catenin complexes recruit vinculin to the adherens junction (AJ) to modulate the mechanical couplings between neighboring cells. However, it is unclear how vinculin influences the AJ structure and function. Here, we identified two patches of salt bridges that lock vinculin in the head-tail autoinhibited conformation and reconstituted the full-length vinculin activation mimetics bound to the cadherin-catenin complex. The cadherin-catenin-vinculin complex contains multiple disordered linkers and is highly dynamic, which poses a challenge for structural studies. We determined the ensemble conformation of this complex using small-angle x-ray and selective deuteration/contrast variation small-angle neutron scattering. In the complex, both α-catenin and vinculin adopt an ensemble of flexible conformations, but vinculin has fully open conformations with the vinculin head and actin-binding tail domains well separated from each other. F-actin binding experiments show that the cadherin-catenin-vinculin complex binds and bundles F-actin. However, when the vinculin actin-binding domain is removed from the complex, only a minor fraction of the complex binds to F-actin. The results show that the dynamic cadherin-catenin-vinculin complex employs vinculin as the primary F-actin binding mode to strengthen AJ-cytoskeleton interactions.
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Affiliation(s)
- Bright Shi
- Department of Chemistry and Biochemistry, City College of New York, City University of New York (CUNY), New York; PhD Programs in Chemistry and Biochemistry, CUNY Graduate Center, New York
| | - Tsutomu Matsui
- Stanford Synchrotron Radiation Light Source, Menlo Park, California
| | - Shuo Qian
- Second Target Station Project, Oak Ridge National Laboratory, Oak Ridge, Tennessee
| | - Thomas M Weiss
- Stanford Synchrotron Radiation Light Source, Menlo Park, California
| | - Iain D Nicholl
- Department of Biomedical Science and Physiology, Faculty of Science and Engineering, University of Wolverhampton, Wolverhampton, United Kingdom
| | - David J E Callaway
- Department of Chemistry and Biochemistry, City College of New York, City University of New York (CUNY), New York.
| | - Zimei Bu
- Department of Chemistry and Biochemistry, City College of New York, City University of New York (CUNY), New York; PhD Programs in Chemistry and Biochemistry, CUNY Graduate Center, New York.
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14
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Du Z, Lai Y, Bai R, Wang B, Zheng Q, Xu C, Lu T, Pei J, Li W, Wu YN, Liu K, Liu Y, Fu E, Li JF, Yang Y, Li Q. Robust Thermal Neutron Detection by LiInP 2 Se 6 Bulk Single Crystals. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2212213. [PMID: 36929743 DOI: 10.1002/adma.202212213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 02/17/2023] [Indexed: 06/16/2023]
Abstract
Direct neutron detection based on semiconductor crystals holds promise to transform current neutron detector technologies and further boosts their widespread applications. It is, however, long impeded by the dearth of suitable materials in the form of sizeable bulk crystals. Here, high-quality centimeter-sized LiInP2 Se6 single crystals are developed using the Bridgman method and their structure and property characteristics are systematically investigated. The prototype detectors fabricated from the crystals demonstrate an energy resolution of 53.7% in response to α-particles generated from an 241 Am source and robust, well-defined response spectra to thermal neutrons that exhibit no polarization or degradation effects under prolonged neutron/γ-ray irradiation. The primary mechanisms of Se-vacancy and InLi antisite defects in the carrier trapping process are also identified. Such insights are critical for further enhancing the energy resolution of LiInP2 Se6 bulk crystals toward the intrinsic level (≈8.6% as indicated by the chemical vapor transport-grown thin crystals). These results pave the way for practically adopting LiInP2 Se6 single crystals in new-generation solid-state neutron detectors.
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Affiliation(s)
- Ziwan Du
- State Key Laboratory of New Ceramics and Fine Processing School of Materials Science and Engineering, Tsinghua University, Beijing, 100084, P. R. China
| | - Yuxuan Lai
- Department of Engineering Physics Ministry of Education Key Laboratory of Particle & Radiation Imaging, Tsinghua University, Beijing, 100084, P. R. China
| | - Ruirong Bai
- Key Laboratory of Polar Materials and Devices (MOE) Department of Electronics, East China Normal University, Shanghai, 200241, P. R. China
| | - Bolun Wang
- State Key Laboratory of New Ceramics and Fine Processing School of Materials Science and Engineering, Tsinghua University, Beijing, 100084, P. R. China
| | - Qiang Zheng
- CAS Key Laboratory of Standardization and Measurement for Nanotechnology CAS Center for Excellence in Nanoscience, National Centre for Nanoscience and Technology, Beijing, 100190, P. R. China
| | - Chuan Xu
- State Key Laboratory of Nuclear Physics and Technology School of Physics, Peking University, Beijing, 100871, P. R. China
| | - Teng Lu
- Research School of Chemistry, The Australian National University, Canberra, ACT, 2601, Australia
| | - Jun Pei
- State Key Laboratory of New Ceramics and Fine Processing School of Materials Science and Engineering, Tsinghua University, Beijing, 100084, P. R. China
| | - Wei Li
- State Key Laboratory of New Ceramics and Fine Processing School of Materials Science and Engineering, Tsinghua University, Beijing, 100084, P. R. China
| | - Yu-Ning Wu
- Key Laboratory of Polar Materials and Devices (MOE) Department of Electronics, East China Normal University, Shanghai, 200241, P. R. China
| | - Kai Liu
- State Key Laboratory of New Ceramics and Fine Processing School of Materials Science and Engineering, Tsinghua University, Beijing, 100084, P. R. China
| | - Yun Liu
- Research School of Chemistry, The Australian National University, Canberra, ACT, 2601, Australia
| | - Engang Fu
- State Key Laboratory of Nuclear Physics and Technology School of Physics, Peking University, Beijing, 100871, P. R. China
| | - Jing-Feng Li
- State Key Laboratory of New Ceramics and Fine Processing School of Materials Science and Engineering, Tsinghua University, Beijing, 100084, P. R. China
| | - Yigang Yang
- Department of Engineering Physics Ministry of Education Key Laboratory of Particle & Radiation Imaging, Tsinghua University, Beijing, 100084, P. R. China
| | - Qian Li
- State Key Laboratory of New Ceramics and Fine Processing School of Materials Science and Engineering, Tsinghua University, Beijing, 100084, P. R. China
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15
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Allen AJ. Selected advances in small-angle scattering and applications they serve in manufacturing, energy and climate change. J Appl Crystallogr 2023; 56:787-800. [PMID: 37284276 PMCID: PMC10241057 DOI: 10.1107/s1600576723003898] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2023] [Accepted: 05/02/2023] [Indexed: 06/08/2023] Open
Abstract
Innovations in small-angle X-ray and neutron scattering (SAXS and SANS) at major X-ray and neutron facilities offer new characterization tools for researching materials phenomena relevant to advanced applications. For SAXS, the new generation of diffraction-limited storage rings, incorporating multi-bend achromat concepts, dramatically decrease electron beam emittance and significantly increase X-ray brilliance over previous third-generation sources. This results in intense X-ray incident beams that are more compact in the horizontal plane, allowing significantly improved spatial resolution, better time resolution, and a new era for coherent-beam SAXS methods such as X-ray photon correlation spectroscopy. Elsewhere, X-ray free-electron laser sources provide extremely bright, fully coherent, X-ray pulses of <100 fs and can support SAXS studies of material processes where entire SAXS data sets are collected in a single pulse train. Meanwhile, SANS at both steady-state reactor and pulsed spallation neutron sources has significantly evolved. Developments in neutron optics and multiple detector carriages now enable data collection in a few minutes for materials characterization over nanometre-to-micrometre scale ranges, opening up real-time studies of multi-scale materials phenomena. SANS at pulsed neutron sources is becoming more integrated with neutron diffraction methods for simultaneous structure characterization of complex materials. In this paper, selected developments are highlighted and some recent state-of-the-art studies discussed, relevant to hard matter applications in advanced manufacturing, energy and climate change.
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Affiliation(s)
- Andrew J. Allen
- Materials Measurement Science Division, National Institute of Standards and Technology, 100 Bureau Drive, Gaithersburg, MD 20899, USA
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16
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Premadasa UI, Bocharova V, Lin L, Genix AC, Heller WT, Sacci RL, Ma YZ, Thiele NA, Doughty B. Tracking Molecular Transport Across Oil/Aqueous Interfaces: Insight into "Antagonistic" Binding in Solvent Extraction. J Phys Chem B 2023. [PMID: 37216432 DOI: 10.1021/acs.jpcb.3c00386] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Abstract
Liquid/liquid (L/L) interfaces play a key, yet poorly understood, role in a range of complex chemical phenomena where time-evolving interfacial structures and transient supramolecular assemblies act as gatekeepers to function. Here, we employ surface-specific vibrational sum frequency generation combined with neutron and X-ray scattering methods to track the transport of dioctyl phosphoric acid (DOP) and di-(2-ethylhexyl) phosphoric acid (DEHPA) ligands used in solvent extraction at buried oil/aqueous interfaces away from equilibrium. Our results show evidence for a dynamic interfacial restructuring at low ligand concentrations in contrast to expectation. These time-varying interfaces arise from the transport of sparingly soluble interfacial ligands into the neighboring aqueous phase. These results support a proposed "antagonistic" role of ligand complexation in the aqueous phase that could serve as a holdback mechanism in kinetic liquid extractions. These findings provide new insights into interfacially controlled chemical transport at L/L interfaces and how these interfaces vary chemically, structurally, and temporally in a concentration-dependent manner and present potential avenues to design selective kinetic separations.
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Affiliation(s)
- Uvinduni I Premadasa
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Vera Bocharova
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Lu Lin
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Anne-Caroline Genix
- Laboratoire Charles Coulomb (L2C), Université de Montpellier, CNRS, F-34095 Montpellier, France
| | - William T Heller
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Robert L Sacci
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Ying-Zhong Ma
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Nikki A Thiele
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Benjamin Doughty
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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17
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Larison T, Pingali SV, Stefik M. New approach for SANS measurement of micelle chain mixing during size and morphology transitions. SOFT MATTER 2023; 19:3487-3495. [PMID: 37133391 DOI: 10.1039/d3sm00157a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
Abstract
Chain exchange in amphiphilic block polymer micelles is measurable with time-resolved small-angle neutron scattering (TR-SANS) where contrast-matched conditions reveal chain mixing as reduced intensity. However, analyzing chain mixing on short time scales e.g. during micelle transformations remains challenging. SANS model fitting can quantify chain mixing during size and morphology changes, however short acquisition times lead to lower data statistics (higher error). Such data are unsuitable for form factor fitting, especially with polydisperse and/or multimodal scenarios. An integrated-reference approach, R(t), is compatible with such data by using fixed reference patterns for the unmixed and fully mixed states that are each integrated to improve data statistics (lower error). Although the R(t) approach is tolerant of low data statistics, it remains incompatible with size and morphology changes. A new shifting references relaxation approach, SRR(t), is proposed where reference patterns are acquired at each time point to enable mixed state calculations regardless of short acquisition times. The additional experimental measurements needed are described which provide these time-varying reference patterns. The use of reference patterns makes the SRR(t) approach size/morphology-agnostic, allowing for the extent of micelle mixing to be directly calculated without this knowledge. SRR(t) is thus compatible with arbitrary levels of complexity and can provide accurate assessment of the mixed state which could support future model analysis. Calculated scattering datasets were used to demonstrate the SRR(t) approach during multiple size, morphology, and solvent conditions (scenarios 1-3). The mixed state calculated from the SRR(t) approach is shown to be accurate for all three scenarios.
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Affiliation(s)
- Taylor Larison
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, USA.
| | - Sai Venkatesh Pingali
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - Morgan Stefik
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, South Carolina 29208, USA.
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18
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Ma Y, Heil C, Nagy G, Heller WT, An Y, Jayaraman A, Bharti B. Synergistic Role of Temperature and Salinity in Aggregation of Nonionic Surfactant-Coated Silica Nanoparticles. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:5917-5928. [PMID: 37053432 PMCID: PMC10134496 DOI: 10.1021/acs.langmuir.3c00432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Revised: 04/03/2023] [Indexed: 06/19/2023]
Abstract
The adsorption of nonionic surfactants onto hydrophilic nanoparticles (NPs) is anticipated to increase their stability in aqueous medium. While nonionic surfactants show salinity- and temperature-dependent bulk phase behavior in water, the effects of these two solvent parameters on surfactant adsorption and self-assembly onto NPs are poorly understood. In this study, we combine adsorption isotherms, dispersion transmittance, and small-angle neutron scattering (SANS) to investigate the effects of salinity and temperature on the adsorption of pentaethylene glycol monododecyl ether (C12E5) surfactant on silica NPs. We find an increase in the amount of surfactant adsorbed onto the NPs with increasing temperature and salinity. Based on SANS measurements and corresponding analysis using computational reverse-engineering analysis of scattering experiments (CREASE), we show that the increase in salinity and temperature results in the aggregation of silica NPs. We further demonstrate the non-monotonic changes in viscosity for the C12E5-silica NP mixture with increasing temperature and salinity and correlate the observations to the aggregated state of NPs. The study provides a fundamental understanding of the configuration and phase transition of the surfactant-coated NPs and presents a strategy to manipulate the viscosity of such dispersion using temperature as a stimulus.
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Affiliation(s)
- Yingzhen Ma
- Cain
Department of Chemical Engineering, Louisiana
State University, Baton
Rouge, Louisiana 70803, United States
| | - Christian Heil
- Department
of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Gergely Nagy
- Neutron
Scattering Division, Oak Ridge National
Laboratory, Oak Ridge, Tennessee 37831, United States
| | - William T. Heller
- Neutron
Scattering Division, Oak Ridge National
Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Yaxin An
- Cain
Department of Chemical Engineering, Louisiana
State University, Baton
Rouge, Louisiana 70803, United States
| | - Arthi Jayaraman
- Department
of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware 19716, United States
| | - Bhuvnesh Bharti
- Cain
Department of Chemical Engineering, Louisiana
State University, Baton
Rouge, Louisiana 70803, United States
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19
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Sun K, Shoaib T, Rutland MW, Beller J, Do C, Espinosa-Marzal RM. Insight into the assembly of lipid-hyaluronan complexes in osteoarthritic conditions. Biointerphases 2023; 18:021005. [PMID: 37041102 DOI: 10.1116/6.0002502] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/13/2023] Open
Abstract
Interactions between molecules in the synovial fluid and the cartilage surface may play a vital role in the formation of adsorbed films that contribute to the low friction of cartilage boundary lubrication. Osteoarthritis (OA) is the most common degenerative joint disease. Previous studies have shown that in OA-diseased joints, hyaluronan (HA) not only breaks down resulting in a much lower molecular weight (MW), but also its concentration is reduced ten times. Here, we have investigated the structural changes of lipid-HA complexes as a function of HA concentration and MW to simulate the physiologically relevant conditions that exist in healthy and diseased joints. Small angle neutron scattering and dynamic light scattering were used to determine the structure of HA-lipid vesicles in bulk solution, while a combination of atomic force microscopy and quartz crystal microbalance was applied to study their assembly on a gold surface. We infer a significant influence of both MW and HA concentrations on the structure of HA-lipid complexes in bulk and assembled on a gold surface. Our results suggest that low MW HA cannot form an amorphous layer on the gold surface, which is expected to negatively impact the mechanical integrity and longevity of the boundary layer and could contribute to the increased wear of the cartilage that has been reported in joints diseased with OA.
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Affiliation(s)
- Kangdi Sun
- Materials Science and Engineering Department, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801
| | - Tooba Shoaib
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830
| | - Mark W Rutland
- KTH Royal Institute of Technology, Department of Chemistry, Stockholm SE-100 44, Sweden; School of Chemistry, University of New South Wales, Sydney 2052, Australia; Laboratoire de Tribologie et Dynamique des Systèmes, École Centrale de Lyon, Lyon 69130, France; and Bioeconomy and Health, Materials and Surface Design, RISE Research Institutes of Sweden, Stockholm, Sweden
| | | | - Changwoo Do
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830
| | - Rosa M Espinosa-Marzal
- Materials Science and Engineering Department, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801
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20
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Hu M, Li X, Heller WT, Bras W, Rzayev J, Russell TP. Using Grazing-Incidence Small-Angle Neutron Scattering to Study the Orientation of Block Copolymer Morphologies in Thin Films. Macromolecules 2023. [DOI: 10.1021/acs.macromol.2c02415] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/17/2023]
Affiliation(s)
- Mingqiu Hu
- Polymer Science and Engineering Department, University of Massachusetts Amherst, 120 Governors Drive, Amherst, Massachusetts 01003, United States
| | - Xindi Li
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
| | - William T. Heller
- Neutron Scattering Division, Oak Ridge National Laboratory, P.O. Box 2008,
MS-6473, Oak Ridge, Tennessee 37831, United States
| | - Wim Bras
- Chemical Sciences Division, Oak Ridge National Laboratory, P.O. Box 2008, MS-6131, Oak Ridge, Tennessee 37831, United States
| | - Javid Rzayev
- Department of Chemistry, University at Buffalo, The State University of New York, Buffalo, New York 14260-3000, United States
| | - Thomas P. Russell
- Polymer Science and Engineering Department, University of Massachusetts Amherst, 120 Governors Drive, Amherst, Massachusetts 01003, United States
- Materials Science Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, United States
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21
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Spatially confined protein assembly in hierarchical mesoporous metal-organic framework. Nat Commun 2023; 14:973. [PMID: 36810582 PMCID: PMC9944321 DOI: 10.1038/s41467-023-36533-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Accepted: 02/03/2023] [Indexed: 02/24/2023] Open
Abstract
Immobilization of biomolecules into porous materials could lead to significantly enhanced performance in terms of stability towards harsh reaction conditions and easier separation for their reuse. Metal-Organic Frameworks (MOFs), offering unique structural features, have emerged as a promising platform for immobilizing large biomolecules. Although many indirect methods have been used to investigate the immobilized biomolecules for diverse applications, understanding their spatial arrangement in the pores of MOFs is still preliminary due to the difficulties in directly monitoring their conformations. To gain insights into the spatial arrangement of biomolecules within the nanopores. We used in situ small-angle neutron scattering (SANS) to probe deuterated green fluorescent protein (d-GFP) entrapped in a mesoporous MOF. Our work revealed that GFP molecules are spatially arranged in adjacent nanosized cavities of MOF-919 to form "assembly" through adsorbate-adsorbate interactions across pore apertures. Our findings, therefore, lay a crucial foundation for the identification of proteins structural basics under confinement environment of MOFs.
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22
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Goswami M, Iyiola OO, Lu W, Hong K, Zolnierczuk P, Stingaciu LR, Heller WT, Taleb O, Sumpter BG, Hallinan DT. Understanding Interfacial Block Copolymer Structure and Dynamics. Macromolecules 2023. [DOI: 10.1021/acs.macromol.2c01814] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Monojoy Goswami
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Oluwagbenga Oare Iyiola
- Chemical and Biomedical Engineering Department, Florida A&M University-Florida State University College of Engineering, Tallahassee, Florida 32310-6046, United States
- Aero-Propulsion, Mechatronics and Energy Center, Florida A&M University-Florida State University College of Engineering, Tallahassee, Florida 32310-6046, United States
| | - Wei Lu
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996-2200, United States
| | - Kunlun Hong
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996-2200, United States
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Piotr Zolnierczuk
- Juelich Center for Neutron Science, Outstation at the Spallation Neutron Source, Oak Ridge, Tennessee 37831-6473, United States
| | - Laura-Roxana Stingaciu
- Neutron Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - William T. Heller
- Neutron Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Omar Taleb
- Chemical and Biomedical Engineering Department, Florida A&M University-Florida State University College of Engineering, Tallahassee, Florida 32310-6046, United States
- Aero-Propulsion, Mechatronics and Energy Center, Florida A&M University-Florida State University College of Engineering, Tallahassee, Florida 32310-6046, United States
| | - Bobby G. Sumpter
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Daniel T. Hallinan
- Chemical and Biomedical Engineering Department, Florida A&M University-Florida State University College of Engineering, Tallahassee, Florida 32310-6046, United States
- Aero-Propulsion, Mechatronics and Energy Center, Florida A&M University-Florida State University College of Engineering, Tallahassee, Florida 32310-6046, United States
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23
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Lee J, Gao KW, Shah NJ, Kang C, Snyder RL, Abel BA, He L, Teixeira SCM, Coates GW, Balsara NP. Relationship between Ion Transport and Phase Behavior in Acetal-Based Polymer Blend Electrolytes Studied by Electrochemical Characterization and Neutron Scattering. Macromolecules 2022. [DOI: 10.1021/acs.macromol.2c01724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Jaeyong Lee
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California94720, United States
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California94720, United States
- Joint Center for Energy Storage Research (JCESR), Argonne National Laboratory, Lemont, Illinois60439, United States
| | - Kevin W. Gao
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California94720, United States
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California94720, United States
- Joint Center for Energy Storage Research (JCESR), Argonne National Laboratory, Lemont, Illinois60439, United States
| | - Neel J. Shah
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California94720, United States
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California94720, United States
| | - Cheol Kang
- Joint Center for Energy Storage Research (JCESR), Argonne National Laboratory, Lemont, Illinois60439, United States
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York14850, United States
| | - Rachel L. Snyder
- Joint Center for Energy Storage Research (JCESR), Argonne National Laboratory, Lemont, Illinois60439, United States
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York14850, United States
| | - Brooks A. Abel
- Department of Chemistry, University of California, Berkeley, Berkeley, California94720, United States
| | - Lilin He
- Neutron Scattering Division, Oak Ridge National Laboratory, Knoxville, Tennessee37830, United States
| | - Susana C. M. Teixeira
- NIST Center for Neutron Research, National Institute of Standards and Technology, Gaithersburg, Maryland20899, United States
- Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware19716, United States
| | - Geoffrey W. Coates
- Joint Center for Energy Storage Research (JCESR), Argonne National Laboratory, Lemont, Illinois60439, United States
- Department of Chemistry and Chemical Biology, Cornell University, Ithaca, New York14850, United States
| | - Nitash P. Balsara
- Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California94720, United States
- Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California94720, United States
- Joint Center for Energy Storage Research (JCESR), Argonne National Laboratory, Lemont, Illinois60439, United States
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24
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Mirzamani M, Dawn A, Garvey CJ, He L, Koerner H, Kumari H. Structural insights into self-assembly of a slow-evolving and mechanically robust supramolecular gel via time-resolved small-angle neutron scattering. Phys Chem Chem Phys 2022; 25:131-141. [PMID: 36475500 DOI: 10.1039/d2cp01826h] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The supramolecular assembly process is a widespread phenomenon found in both synthetically engineered and naturally occurring systems, such as colloids, liquid crystals and micelles. However, a basic understanding of the evolution of self-assembly processes over time remains elusive, primarily owing to the fast kinetics involved in these processes and the complex nature of the various non-covalent interactions operating simultaneously. With the help of a slow-evolving supramolecular gel derived from a urea-based gelator, we aim to capture the different stages of the self-assembly process commencing from nucleation. In particular, we are able to study the self-assembly in real time using time-resolved small-angle neutron scattering (SANS) at length scales ranging from approximately 30 Å to 250 Å. Systems with and without sonication are compared simultaneously, to follow the different kinetic paths involved in these two cases. Time-dependent NMR, morphological and rheological studies act complementarily to the SANS data at sub-micron and bulk length scales. A hollow columnar formation comprising of gelator monomers arranged radially along the long axis of the fiber and solvent in the core is detected at the very early stage of the self-assembly process. While sonication promotes uniform growth of fibers and fiber entanglement, the absence of such a stimulus helps extensive bundle formation at a later stage and at the microscopic domain, making the gel system mechanically robust. The results of the present work provide a thorough understanding of the self-assembly process and reveal a path for fine-tuning such growth processes for applications such as the cosmetics industry, 3D printing ink development and paint industry.
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Affiliation(s)
- Marzieh Mirzamani
- James L. Winkle College of Pharmacy, University of Cincinnati, 231 Albert Sabin Way, Cincinnati, OH 45267-0004, USA.
| | - Arnab Dawn
- James L. Winkle College of Pharmacy, University of Cincinnati, 231 Albert Sabin Way, Cincinnati, OH 45267-0004, USA.
| | - Christopher J Garvey
- Heinz Maier-Leibnitz Zentrum (MLZ), Technische Universität München, Lichtenbergstraße 1, Garching 85748, Germany
| | - Lilin He
- Neutron Scattering Division, Oak Ridge National Laboratory, 1 Bethel Valley Rd., Oak Ridge, TN 37831, USA
| | - Hilmar Koerner
- Materials & Manufacturing Directorate, Air Force Research Laboratory, WPAFB, Ohio 45433, USA
| | - Harshita Kumari
- James L. Winkle College of Pharmacy, University of Cincinnati, 231 Albert Sabin Way, Cincinnati, OH 45267-0004, USA.
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25
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Winn BL, Broholm C, Bird MD, Haberl B, Granroth GE, Katsaras J. A flexible neutron spectrometer concept with a new ultra-high field steady-state vertical-bore magnet. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2022; 93:123903. [PMID: 36586946 DOI: 10.1063/5.0122934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/26/2022] [Accepted: 11/14/2022] [Indexed: 06/17/2023]
Abstract
The proposed facility explores materials under ultra-high magnetic fields. By combining the power of high fields to tune materials and of neutron scattering to probe the resulting changes down to the atomic scale, this facility will enable transformative progress in the study of quantum materials and is named for the "TITAN" subset of Greek gods to reflect this transformation. TITAN will offer DC magnetic fields up to at least 20 T. Exploiting the record brightness and bandwidth of the Second Target Station at the Spallation Neutron Source, TITAN will probe atomic-scale responses through high efficiency neutron spectroscopy up to 80 meV energy transfer, high resolution diffraction, and small angle neutron scattering. Focusing neutron optics will maximize flux on accurately positioned samples, while radial collimation and optimized shielding and detection strategies will minimize backgrounds.
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Affiliation(s)
- B L Winn
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - C Broholm
- Institute for Quantum Matter and Department of Physics and Astronomy, Johns Hopkins University, Baltimore, Maryland 21218, USA
| | - M D Bird
- Magnet Science and Technology Division, National High Magnetic Field Laboratory, Tallahassee, Florida 32310, USA
| | - B Haberl
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - G E Granroth
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - J Katsaras
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
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26
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Sumner J, Qian S. DENSS-multiple: A structure reconstruction method using contrast variation of small-angle neutron scattering based on the DENSS algorithm. BBA ADVANCES 2022; 2:100063. [PMID: 37082592 PMCID: PMC10074922 DOI: 10.1016/j.bbadva.2022.100063] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2022] [Revised: 10/21/2022] [Accepted: 10/24/2022] [Indexed: 11/09/2022] Open
Abstract
The 3D structure of biomacromolecules, such as protein and DNA/RNA, provide keys to understanding their biological functions. Among many structural biology techniques, small-angle scattering techniques with ab initio methods have been widely used to reveal biomolecular structures in relevant solution conditions. Recently, a method called DENsity from Solution Scattering (DENSS) was developed to reconstruct the scattering density directly from biological small-angle X-ray and neutron scattering data instead of using a dummy atom modeling approach. Here, a method named DENSS-Multiple was developed to work simultaneously on multiple datasets from small-angle neutron scattering (SANS) contrast variation data. The easily manipulable neutron contrast has been widely exploited to study the structure and function of biological macromolecules and their complexes in solution. This new method provides a single structural result that includes all the information represented by different contrasts from SANS. The results from DENSS-Multiple generally have better resolution than those from DENSS, and more subtle features are represented by density variations from different phases of a structure. DENSS-Multiple was tested on various examples, including simulated and experimental data. These results, along with DENSS-Multiple's applications and limitations, are discussed herein.
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Affiliation(s)
- Jacob Sumner
- Neutron Scattering Division, Oak Ridge National Laboratory, United States
| | - Shuo Qian
- Neutron Scattering Division, Oak Ridge National Laboratory, United States
- Spallation Neutron Source Second Target Station Project, Oak Ridge National Laboratory, United States
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27
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Heller WT. Small-Angle Neutron Scattering for Studying Lipid Bilayer Membranes. Biomolecules 2022; 12:1591. [PMID: 36358941 PMCID: PMC9687511 DOI: 10.3390/biom12111591] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2022] [Revised: 10/18/2022] [Accepted: 10/26/2022] [Indexed: 09/23/2023] Open
Abstract
Small-angle neutron scattering (SANS) is a powerful tool for studying biological membranes and model lipid bilayer membranes. The length scales probed by SANS, being from 1 nm to over 100 nm, are well-matched to the relevant length scales of the bilayer, particularly when it is in the form of a vesicle. However, it is the ability of SANS to differentiate between isotopes of hydrogen as well as the availability of deuterium labeled lipids that truly enable SANS to reveal details of membranes that are not accessible with the use of other techniques, such as small-angle X-ray scattering. In this work, an overview of the use of SANS for studying unilamellar lipid bilayer vesicles is presented. The technique is briefly presented, and the power of selective deuteration and contrast variation methods is discussed. Approaches to modeling SANS data from unilamellar lipid bilayer vesicles are presented. Finally, recent examples are discussed. While the emphasis is on studies of unilamellar vesicles, examples of the use of SANS to study intact cells are also presented.
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Affiliation(s)
- William T Heller
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
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28
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Brady NG, Qian S, Nguyen J, O'Neill HM, Bruce BD. Small angle neutron scattering and lipidomic analysis of a native, trimeric PSI-SMALP from a thermophilic cyanobacteria. BIOCHIMICA ET BIOPHYSICA ACTA. BIOENERGETICS 2022; 1863:148596. [PMID: 35853496 PMCID: PMC10228149 DOI: 10.1016/j.bbabio.2022.148596] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/07/2021] [Revised: 06/05/2022] [Accepted: 07/11/2022] [Indexed: 01/21/2023]
Abstract
The use of styrene-maleic acid copolymers (SMAs) to produce membrane protein-containing nanodiscs without the initial detergent isolation has gained significant interest over the last decade. We have previously shown that a Photosystem I SMALP from the thermophilic cyanobacterium, Thermosynechococcus elongatus (PSI-SMALP), has much more rapid energy transfer and charge separation in vitro than detergent isolated PSI complexes. In this study, we have utilized small-angle neutron scattering (SANS) to better understand the geometry of these SMALPs. These techniques allow us to investigate the size and shape of these particles in their fully solvated state. Further, the particle's proteolipid core and detergent shell or copolymer belt can be interrogated separately using contrast variation, a capability unique to SANS. Here we report the dimensions of the Thermosynechococcus elongatus PSI-SMALP containing a PSI trimer. At ~1.5 MDa, PSI-SMALP is the largest SMALP to be isolated; our lipidomic analysis indicates it contains ~1300 lipids/per trimeric particle, >40-fold more than the PSI-DDM particle and > 100 fold more than identified in the 1JB0 crystal structure. Interestingly, the lipid composition to the PSI trimer in the PSI-SMALP differs significantly from bulk thylakoid composition, being enriched ~50 % in the anionic sulfolipid, SQDG. Finally, utilizing the contrast match point for the SMA 1440 copolymer, we also can observe the ~1 nm SMA copolymer belt surrounding this SMALP for the first time, consistent with most models of SMA organization.
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Affiliation(s)
- Nathan G Brady
- Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA
| | - Shuo Qian
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA; The Second Target Station Project, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Jon Nguyen
- Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA
| | - Hugh M O'Neill
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA
| | - Barry D Bruce
- Department of Biochemistry & Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, USA; Department of Chemical and Biomolecular Engineering, University of Tennessee, Knoxville, TN 37996, USA; Department of Microbiology, University of Tennessee, Knoxville, TN 37996, USA.
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29
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Qian S, Heller W, Chen WR, Christianson A, Do C, Wang Y, Lin JYY, Huegle T, Jiang C, Boone C, Hart C, Graves V. CENTAUR-The small- and wide-angle neutron scattering diffractometer/spectrometer for the Second Target Station of the Spallation Neutron Source. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2022; 93:075104. [PMID: 35922314 DOI: 10.1063/5.0090527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Accepted: 06/11/2022] [Indexed: 06/15/2023]
Abstract
CENTAUR has been selected as one of the eight initial instruments to be built at the Second Target Station (STS) of the Spallation Neutron Source at Oak Ridge National Laboratory. It is a small-angle neutron scattering (SANS) and wide-angle neutron scattering (WANS) instrument with diffraction and spectroscopic capabilities. This instrument will maximally leverage the high brightness of the STS source, the state-of-the-art neutron optics, and a suite of detectors to deliver unprecedented capabilities that enable measurements over a wide range of length scales with excellent resolution, measurements on smaller samples, and time-resolved investigations of evolving structures. Notably, the simultaneous WANS and diffraction capability will be unique among neutron scattering instruments in the United States. This instrument will provide much needed capabilities for soft matter and polymer sciences, geology, biology, quantum condensed matter, and other materials sciences that need in situ and operando experiments for kinetic and/or out-of-equilibrium studies. Beam polarization and a high-resolution chopper will enable detailed structural and dynamical investigations of magnetic and quantum materials. CENTAUR's excellent resolution makes it ideal for low-angle diffraction studies of highly ordered large-scale structures, such as skyrmions, shear-induced ordering in colloids, and biomembranes. Additionally, the spectroscopic mode of this instrument extends to lower momentum transfers than are currently possible with existing spectrometers, thereby providing a unique capability for inelastic SANS studies.
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Affiliation(s)
- Shuo Qian
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - William Heller
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Wei-Ren Chen
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | | | - Changwoo Do
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Yangyang Wang
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Jiao Y Y Lin
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Thomas Huegle
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Chenyang Jiang
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Cristina Boone
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Cameron Hart
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
| | - Van Graves
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, USA
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30
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DiPasquale M, Deering TG, Desai D, Sharma AK, Amin S, Fox TE, Kester M, Katsaras J, Marquardt D, Heberle FA. Influence of ceramide on lipid domain stability studied with small-angle neutron scattering: The role of acyl chain length and unsaturation. Chem Phys Lipids 2022; 245:105205. [PMID: 35483419 PMCID: PMC9320172 DOI: 10.1016/j.chemphyslip.2022.105205] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2022] [Accepted: 04/11/2022] [Indexed: 12/13/2022]
Abstract
Ceramides and diacylglycerols are groups of lipids capable of nucleating and stabilizing ordered lipid domains, structures that have been implicated in a range of biological processes. Previous studies have used fluorescence reporter molecules to explore the influence of ceramide acyl chain structure on sphingolipid-rich ordered phases. Here, we use small-angle neutron scattering (SANS) to examine the ability of ceramides and diacylglycerols to promote lipid domain formation in the well-characterized domain-forming mixture DPPC/DOPC/cholesterol. SANS is a powerful, probe-free technique for interrogating membrane heterogeneity, as it is differentially sensitive to hydrogen's stable isotopes protium and deuterium. Specifically, neutron contrast is generated through selective deuteration of lipid species, thus enabling the detection of nanoscopic domains enriched in deuterated saturated lipids dispersed in a matrix of protiated unsaturated lipids. Using large unilamellar vesicles, we found that upon replacing 10 mol% DPPC with either C16:0 or C18:0 ceramide, or 16:0 diacylglycerol (dag), lipid domains persisted to higher temperatures. However, when DPPC was replaced with short chain (C6:0 or C12:0) or very long chain (C24:0) ceramides, or ceramides with unsaturated acyl chains of any length (C6:1(3), C6:1(5), C18:1, and C24:1), as well as C18:1-dag, lipid domains were destabilized, melting at lower temperatures than those in the DPPC/DOPC/cholesterol system. These results show how ceramide acyl chain length and unsaturation influence lipid domains and have implications for how cell membranes might modify their function through the generation of different ceramide species.
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Affiliation(s)
- Mitchell DiPasquale
- Department of Chemistry and Biochemistry, University of Windsor, Windsor N9B 3P4, ON, Canada
| | - Tye G Deering
- Department of Pharmacology, University of Virginia, Charlottesville 22908, VA, USA
| | - Dhimant Desai
- Department of Pharmacology, Penn State University, University Park 16801, PA, USA
| | - Arun K Sharma
- Department of Pharmacology, Penn State University, University Park 16801, PA, USA
| | - Shantu Amin
- Department of Pharmacology, Penn State University, University Park 16801, PA, USA
| | - Todd E Fox
- Department of Pharmacology, University of Virginia, Charlottesville 22908, VA, USA
| | - Mark Kester
- Department of Pharmacology, University of Virginia, Charlottesville 22908, VA, USA; Department of Molecular Physiology and Biophysics, University of Virginia, Charlottesville 22908, VA, USA
| | - John Katsaras
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge 37831, TN, USA; Joint Institute for Neutron Sciences, Oak Ridge National Laboratory, Oak Ridge 37831, TN, USA; Department of Physics and Astronomy, University of Tennessee, Knoxville 37996, TN, USA.
| | - Drew Marquardt
- Department of Chemistry and Biochemistry, University of Windsor, Windsor N9B 3P4, ON, Canada; Department of Physics, University of Windsor, Windsor N9B 3P4, ON, Canada.
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31
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Louden ER, Manni S, Zandt JEV, Leishman AWD, Taufour V, Bud'ko SL, DeBeer-Schmitt L, Honecker D, Dewhurst CD, Canfield PC, Eskildsen MR. Effects of magnetic and non-magnetic doping on the vortex lattice in MgB 2. J Appl Crystallogr 2022. [DOI: 10.1107/s160057672200468x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
Small-angle neutron scattering has been used to study the vortex lattice in superconducting MgB2 doped with either manganese or carbon to achieve a similar suppression of the critical temperature. Measurements were performed with the magnetic field applied along the c axis, where the vortex lattice in pure MgB2 is known to undergo a field- and temperature-driven 30° rotation transition. For Mn doping, the vortex lattice phase diagram remains qualitatively similar to that of pure MgB2, indicating only a modest effect on the vortex–vortex interaction. In contrast, the vortex lattice rotation transition is completely suppressed in the C-doped case, probably due to a change in the electronic structure which affects the two-band/two-gap nature of superconductivity in MgB2. The vortex lattice longitudinal correlation length shows the opposite behavior, remaining roughly unchanged between pure and C-doped MgB2 while it is significantly reduced in the Mn-doped case. However, the extensive vortex lattice metastability and related activated behavior, observed in conjunction with the vortex lattice transition in pure MgB2, are also seen in the Mn-doped sample. This shows that the vortex lattice disordering is not associated with a substantially increased vortex pinning.
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32
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Heller WT, Do C. Impact of Two Water-Miscible Ionic Liquids on the Temperature-Dependent Self-Assembly of the (EO) 6-(PO) 34-(EO) 6 Block Copolymer. ACS OMEGA 2022; 7:19474-19483. [PMID: 35721995 PMCID: PMC9202293 DOI: 10.1021/acsomega.2c01166] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/26/2022] [Accepted: 05/19/2022] [Indexed: 06/15/2023]
Abstract
There are many studies on the self-assembly of triblock poly(ethylene oxide)-poly(propylene oxide)-poly(ethylene oxide) copolymers in aqueous solution. These polymers display a rich phase diagram as a function of block length, concentration, temperature, and additives. Here, we present a small-angle neutron scattering study of the impact of two water-miscible ionic liquids, 1-butyl-3-methylimidazolium chloride ([C4C1mim][Cl]) and 1-butyl-3-methylpyrrolidinium chloride ([C4C1pyrr][Cl]), on the temperature-dependent self-assembly of (EO)6-(PO)34-(EO)6, also known as L62 Pluronic, in aqueous solution. Both ionic liquids depress the temperatures of the various structural transitions that take place, but ([C4C1pyrr][Cl]) has a stronger effect. The structures that the triblock copolymer self-assembles into do not dramatically change nor do they significantly change the series of structures that the system transitions through as a function of temperature relative to the various transition temperatures.
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33
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Murray DT, Walia N, Weiss KL, Stanley CB, Nagy G, Stroupe ME. Neutron scattering maps the higher-order assembly of NADPH-dependent assimilatory sulfite reductase. Biophys J 2022; 121:1799-1812. [PMID: 35443926 DOI: 10.1016/j.bpj.2022.04.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Revised: 03/09/2022] [Accepted: 04/15/2022] [Indexed: 11/30/2022] Open
Abstract
Precursor molecules for biomass incorporation must be imported into cells and made available to the molecular machines that build the cell. Sulfur-containing macromolecules require that sulfur be in its S2- oxidation state before assimilation into amino acids, cofactors, and vitamins that are essential to organisms throughout the biosphere. In α-proteobacteria, NADPH-dependent assimilatory sulfite reductase (SiR) performs the final six-electron reduction of sulfur. SiR is a dodecameric oxidoreductase composed of an octameric flavoprotein reductase (SiRFP) and four hemoprotein metalloenzyme oxidases (SiRHP). SiR performs the electron transfer reduction reaction to produce sulfide from sulfite through coordinated domain movements and subunit interactions without release of partially reduced intermediates. Efforts to understand the electron transfer mechanism responsible for SiR's efficiency are confounded by structural heterogeneity arising from intrinsically disordered regions throughout its complex, including the flexible linker joining SiRFP's flavin-binding domains. As a result, high-resolution structures of SiR dodecamer and its subcomplexes are unknown, leaving a gap in the fundamental understanding of how SiR performs this uniquely large-volume electron transfer reaction. Here, we use deuterium labeling, in vitro reconstitution, analytical ultracentrifugation (AUC), small-angle neutron scattering (SANS), and neutron contrast variation (NCV) to observe the relative subunit positions within SiR's higher-order assembly. AUC and SANS reveal SiR to be a flexible dodecamer and confirm the mismatched SiRFP and SiRHP subunit stoichiometry. NCV shows that the complex is asymmetric, with SiRHP on the periphery of the complex and the centers of mass between SiRFP and SiRHP components over 100 Å apart. SiRFP undergoes compaction upon assembly into SiR's dodecamer and SiRHP adopts multiple positions in the complex. The resulting map of SiR's higher-order structure supports a cis/trans mechanism for electron transfer between domains of reductase subunits as well as between tightly-bound or transiently-interacting reductase and oxidase subunits.
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Affiliation(s)
- Daniel T Murray
- Department of Biological Science and Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA
| | - Nidhi Walia
- Department of Biological Science and Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA
| | - Kevin L Weiss
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA
| | - Christopher B Stanley
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA; Computational Sciences and Engineering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA
| | - Gergely Nagy
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37830, USA
| | - M Elizabeth Stroupe
- Department of Biological Science and Institute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA.
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Zhang Z, Han Y, Chen WR, Do C. Diffusion characteristics of water molecules in a lamellar structure formed by triblock copolymers. Phys Chem Chem Phys 2022; 24:8015-8021. [PMID: 35315475 DOI: 10.1039/d2cp00207h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The distribution and diffusion of water molecules are playing important roles in determining self-assembly and transport properties of polymeric systems. Small-angle neutron scattering (SANS) experiments and molecular dynamics (MD) simulation have been applied to understand the distribution of water molecules and their dynamics in the lamellar membrane formed by Pluronic L62 block copolymers. Penetration of water molecules into the polyethylene oxide (PEO) layers of the membranes has been estimated using scattering length density (SLD) profiles obtained from SANS measurements, which agree well with the molecular distribution observed from MD simulations. The water diffusion coefficient at different regions of the lamellar membrane was further investigated using MD simulation. The diffusion characteristic shows a transition from normal to anomalous diffusion as the position of the water molecule changes from the bulk to PEO and to the polypropylene oxide (PPO) layer. We find that water molecules within the PEO or PPO layers follow subdiffusive dynamics, which can be interpreted by the model of fractional Brownian motion.
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Affiliation(s)
- Zhe Zhang
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA. .,Forschungszentrum Jülich, Jülich Center for Neutron Science, Outstation at the Spallation Neutron Source (SNS), Oak Ridge National Laboratory, Oak Ridge Tennessee, 37831, USA
| | - Youngkyu Han
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
| | - Wei-Ren Chen
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
| | - Changwoo Do
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.
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35
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Dawn A, Pajoubpong J, Mesmer A, Mirzamani M, He L, Kumari H. Manipulating Assemblies in Metallosupramolecular Gels, Driven by Isomeric Ligands, Metal Coordination, and Adaptive Binary Gelator Systems. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2022; 38:1705-1715. [PMID: 35078313 DOI: 10.1021/acs.langmuir.1c02738] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Metallosupramolecular gel (MSG) is a unique combination of metal-ligand coordination chemistry and supramolecular gel chemistry with extraordinary adaptivity and softness. Such materials find broad uses in industry, pharmaceutical and biomedical sectors, and in technology generation among many others. Pyridyl-appended bis(urea) gelator systems have been extensively studied as potential MSG-forming materials in the presence of various metal ions. The previous molecular engineering approaches depicted competitive intermolecular and intramolecular binding modes involving urea and pyridyl groups and further fine-tuned by the presence of various molecular spacers. In those studies, formation of intermolecular hydrogen bonding among urea moieties to form urea tape was found to be the key factor in one-dimensional assembly and gel formation. In the present study, we show how two isomeric pyridyl-appended bis(urea) ligands can be designed appropriately to essentially eliminate the interference of competitive factors, leaving the intermolecular urea assembly practically unaffected even in the presence of metal ions. We found that one of the two ligands (L2) and the mixed ligand (L1 + L2) assemblies formed gel in the presence and absence of various metal ions. A metal ion with a linear coordination geometry significantly strengthened the gels. Moreover, an inherently weak L1 + L2 assembly appears to be more adaptive in accommodating larger metal ions especially with nonlinear coordination geometry preferences. Small-angle neutron scattering and rheological, spectroscopic, and morphological characterizations, collectively, capture a detailed interplay among ligand assembly, metal-ligand coordination, and adaptivity, driven by the pure versus mixed ligand assemblies. The knowledge gathered from the present study would be highly beneficial in engineering the metallosupramolecular polymeric assemblies toward their functional applications.
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Affiliation(s)
- Arnab Dawn
- James L. Winkle College of Pharmacy, University of Cincinnati, 231 Albert Sabin Way, Medical Science Building, Cincinnati, Ohio 45267-0514, United States
| | - Jinnipha Pajoubpong
- James L. Winkle College of Pharmacy, University of Cincinnati, 231 Albert Sabin Way, Medical Science Building, Cincinnati, Ohio 45267-0514, United States
| | - Amira Mesmer
- James L. Winkle College of Pharmacy, University of Cincinnati, 231 Albert Sabin Way, Medical Science Building, Cincinnati, Ohio 45267-0514, United States
| | - Marzieh Mirzamani
- James L. Winkle College of Pharmacy, University of Cincinnati, 231 Albert Sabin Way, Medical Science Building, Cincinnati, Ohio 45267-0514, United States
| | - Lilin He
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Harshita Kumari
- James L. Winkle College of Pharmacy, University of Cincinnati, 231 Albert Sabin Way, Medical Science Building, Cincinnati, Ohio 45267-0514, United States
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Meng X, Qiao Y, Do C, Bras W, He C, Ke Y, Russell TP, Qiu D. Hysteresis-Free Nanoparticle-Reinforced Hydrogels. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2022; 34:e2108243. [PMID: 34837255 DOI: 10.1002/adma.202108243] [Citation(s) in RCA: 49] [Impact Index Per Article: 24.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Revised: 11/21/2021] [Indexed: 06/13/2023]
Abstract
The elastic storage and release of mechanical energy has been key to many developments throughout the history of mankind. Resilience, absent hysteresis, has been an elusive goal to achieve, particularly at large deformations. Using a low-crosslink-density polyacrylamide hydrogel at 96% water content having hyperbranched silica nanoparticles (HBSPs) as the major junction points, a hysteresis-free material is realized. The fatigue-free characteristic of these composite hydrogels is evidenced by the invariance of the stress-strain curves at strain ratios of 4, even after 5000 cycles. At a strain ratio of 7, only a 1.3% hysteresis is observed. A markedly increased strain-ratio-at-break of 11.5 is observed. The unique attributes of these resilient hydrogels are manifested in the high-fidelity detection of dynamic deformations under cyclic loading over a broad range of frequencies, difficult to achieve with other materials.
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Affiliation(s)
- Xiaohui Meng
- Beijing National Laboratory for Molecular Sciences (BNLMS), Laboratory of Polymer Physics and Chemistry, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Yan Qiao
- Beijing National Laboratory for Molecular Sciences (BNLMS), Laboratory of Polymer Physics and Chemistry, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Changwoo Do
- Oak Ridge National Laboratory, Neutron Scattering Division, One Bethel Valley Road, Oak Ridge, TN, 37831, USA
| | - Wim Bras
- Oak Ridge National Laboratory, Chemical Sciences Division, One Bethel Valley Road, Oak Ridge, TN, 37831, USA
| | - Chunyong He
- Spallation Neutron Source Science Center, Dongguan, 523803, China
- Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, 100049, China
| | - Yubin Ke
- Spallation Neutron Source Science Center, Dongguan, 523803, China
- Institute of High Energy Physics, Chinese Academy of Sciences, Beijing, 100049, China
| | - Thomas P Russell
- Polymer Science and Engineering Department, University of Massachusetts Amherst, Amherst, MA, 01003, USA
- Materials Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA, 94720, USA
| | - Dong Qiu
- Beijing National Laboratory for Molecular Sciences (BNLMS), Laboratory of Polymer Physics and Chemistry, CAS Research/Education Center for Excellence in Molecular Sciences, Institute of Chemistry, Chinese Academy of Sciences, Beijing, 100190, China
- University of Chinese Academy of Sciences, Beijing, 100049, China
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37
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Trewhella J. Recent advances in small-angle scattering and its expanding impact in structural biology. Structure 2022; 30:15-23. [PMID: 34995477 DOI: 10.1016/j.str.2021.09.008] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2021] [Revised: 08/23/2021] [Accepted: 09/20/2021] [Indexed: 10/19/2022]
Abstract
Applications of small-angle scattering (SAS) in structural biology have benefited from continuing developments in instrumentation, tools for data analysis, modeling capabilities, standards for data and model presentation, and data archiving. The interplay of these capabilities has enabled SAS to contribute to advances in structural biology as the field pushes the boundaries in studies of biomolecular complexes and assemblies as large as whole cells, membrane proteins in lipid environments, and dynamic systems on time scales ranging from femtoseconds to hours. This review covers some of the important advances in biomolecular SAS capabilities for structural biology focused on over the last 5 years and presents highlights of recent applications that demonstrate how the technique is exploring new territories.
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Affiliation(s)
- Jill Trewhella
- School of Life and Environmental Sciences, The University of Sydney, Camperdown, NSW 2006, Australia.
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Kish LL, Thaler A, Lee M, Zakrzewski AV, Reig‐i‐Plessis D, Wolin BA, Wang X, Littrell KC, Budakian R, Zhou H, Gai Z, Frontzek MD, Zapf VS, Aczel AA, DeBeer‐Schmitt L, MacDougall GJ. Domain Wall Patterning and Giant Response Functions in Ferrimagnetic Spinels. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2021; 8:e2101402. [PMID: 34719881 PMCID: PMC8655211 DOI: 10.1002/advs.202101402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 09/10/2021] [Indexed: 06/13/2023]
Abstract
The manipulation of mesoscale domain wall phenomena has emerged as a powerful strategy for designing ferroelectric responses in functional devices, but its full potential is not yet realized in the field of magnetism. This work shows a direct connection between magnetic response functions in mechanically strained samples of Mn3 O4 and MnV2 O4 and stripe-like patternings of the bulk magnetization which appear below known magnetostructural transitions. Building off previous magnetic force microscopy data, a small-angle neutron scattering is used to show that these patterns represent distinctive magnetic phenomena which extend throughout the bulk of two separate materials, and further are controllable via applied magnetic field and mechanical stress. These results are unambiguously connected to the anomalously large magnetoelastic and magnetodielectric response functions reported for these materials, by performing susceptibility measurements on the same crystals and directly correlating local and macroscopic data.
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Affiliation(s)
- Lazar L. Kish
- Department of Physics and Materials Research LaboratoryUniversity of Illinois at Urbana‐ChampaignUrbanaIL61801USA
| | - Alex Thaler
- Department of Physics and Materials Research LaboratoryUniversity of Illinois at Urbana‐ChampaignUrbanaIL61801USA
- Neutron Scattering DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
| | - Minseong Lee
- National High Magnetic Field LaboratoryLos Alamos National LaboratoryLos AlamosNM87544USA
| | - Alexander V. Zakrzewski
- Department of Physics and Materials Research LaboratoryUniversity of Illinois at Urbana‐ChampaignUrbanaIL61801USA
| | - Dalmau Reig‐i‐Plessis
- Department of Physics and Materials Research LaboratoryUniversity of Illinois at Urbana‐ChampaignUrbanaIL61801USA
- Department of Physics and Astronomy and Quantum Matter InstituteUniversity of British ColumbiaVancouverBritish ColumbiaV6T 1Z1Canada
| | - Brian A. Wolin
- Department of Physics and Materials Research LaboratoryUniversity of Illinois at Urbana‐ChampaignUrbanaIL61801USA
| | - Xu Wang
- Department of Physics and Materials Research LaboratoryUniversity of Illinois at Urbana‐ChampaignUrbanaIL61801USA
| | | | - Raffi Budakian
- Department of Physics and Materials Research LaboratoryUniversity of Illinois at Urbana‐ChampaignUrbanaIL61801USA
- Department of Physics and AstronomyUniversity of WaterlooWaterlooOntarioN2L 3G1Canada
| | - Haidong Zhou
- Department of Physics and Materials Research LaboratoryUniversity of Illinois at Urbana‐ChampaignUrbanaIL61801USA
- Department of Physics and Astronomy University of TennesseeKnoxvilleTennessee37996USA
| | - Zheng Gai
- Center for Nanophase Materials SciencesOak Ridge National LaboratoryOak RidgeTN37831USA
| | | | - Vivien S. Zapf
- National High Magnetic Field LaboratoryLos Alamos National LaboratoryLos AlamosNM87544USA
| | - Adam A. Aczel
- Neutron Scattering DivisionOak Ridge National LaboratoryOak RidgeTN37831USA
| | | | - Gregory J. MacDougall
- Department of Physics and Materials Research LaboratoryUniversity of Illinois at Urbana‐ChampaignUrbanaIL61801USA
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Sun Y, Im J, Shobnam N, Fanourakis SK, He L, Anovitz LM, Erickson PR, Sun H, Zhuang J, Löffler FE. Degradation of Adsorbed Bisphenol A by Soluble Mn(III). ENVIRONMENTAL SCIENCE & TECHNOLOGY 2021; 55:13014-13023. [PMID: 34559517 DOI: 10.1021/acs.est.1c03862] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Bisphenol A (BPA), a high production volume chemical and potential endocrine disruptor, is found to be associated with sediments and soils due to its hydrophobicity (log KOW of 3.42). We used superfine powdered activated carbon (SPAC) with a particle size of 1.38 ± 0.03 μm as a BPA sorbent and assessed degradation of BPA by oxidized manganese (Mn) species. SPAC strongly sorbed BPA, and desorption required organic solvents. No degradation of adsorbed BPA (278.7 ± 0.6 mg BPA g-1 SPAC) was observed with synthetic, solid α-MnO2 with a particle size of 15.41 ± 1.35 μm; however, 89% mass reduction occurred following the addition of 0.5 mM soluble Mn(III). Small-angle neutron scattering data suggested that both adsorption and degradation of BPA occurred in SPAC pores. The findings demonstrate that Mn(III) mediates oxidative transformation of dissolved and adsorbed BPA, the latter observation challenging the paradigm that contaminant desorption and diffusion out of pore structures are required steps for degradation. Soluble Mn(III) is abundant near oxic-anoxic interfaces, and the observation that adsorbed BPA is susceptible to degradation has implications for predicting, and possibly managing, the fate and longevity of BPA in environmental systems.
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Affiliation(s)
- Yanchen Sun
- Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee 37996, United States
- Center for Environmental Biotechnology, University of Tennessee, Knoxville, Tennessee 37996, United States
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Jeongdae Im
- Department of Civil Engineering, Kansas State University, Manhattan, Kansas 66503, United States
| | - Nusrat Shobnam
- Department of Civil Engineering, Kansas State University, Manhattan, Kansas 66503, United States
| | - Sofia K Fanourakis
- Department of Materials Science and Engineering, University of Houston, Houston, Texas 77204, United States
| | - Lilin He
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Lawrence M Anovitz
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | | | - Huihui Sun
- Department of Biosystems Engineering and Soil Science, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Jie Zhuang
- Department of Biosystems Engineering and Soil Science, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Frank E Löffler
- Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, Tennessee 37996, United States
- Center for Environmental Biotechnology, University of Tennessee, Knoxville, Tennessee 37996, United States
- Department of Microbiology, University of Tennessee, Knoxville, Tennessee 37996, United States
- Department of Biosystems Engineering and Soil Science, University of Tennessee, Knoxville, Tennessee 37996, United States
- Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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Doucet M, Samarakoon AM, Do C, Heller WT, Archibald R, Alan Tennant D, Proffen T, Granroth GE. Machine learning for neutron scattering at ORNL *. MACHINE LEARNING: SCIENCE AND TECHNOLOGY 2021. [DOI: 10.1088/2632-2153/abcf88] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023] Open
Abstract
Abstract
Machine learning (ML) offers exciting new opportunities to extract more information from scattering data. At neutron scattering user facilities, ML has the potential to help accelerate scientific productivity by empowering facility users with insight into their data which has traditionally been supplied by scattering experts. Such support can help in both speeding up common modeling problems for users, as well as help solve harder problems that are normally time consuming and difficult to address with standard methods. This article explores the recent ML work undertaken at Oak Ridge National Laboratory involving neutron scattering data. We cover materials structure modeling for diffuse scattering, powder diffraction, and small-angle scattering. We also discuss how ML can help to model the response of the instrument more precisely, as well as enable quick extraction of information from neutron data. The application of super-resolution techniques to small-angle scattering and peak extraction for diffraction will be discussed.
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41
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Rother G, Tumuluri U, Huang K, Heller WT, Dai S, Carrillo JM, Sumpter BG. Interactions of an Imine Polymer with Nanoporous Silica and Carbon in Hybrid Adsorbents for Carbon Capture. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2021; 37:4622-4631. [PMID: 33819051 DOI: 10.1021/acs.langmuir.1c00305] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Efficient carbon capture from stationary point sources can be achieved using hybrid adsorbents comprising nanoporous substrates coated with imine polymers. The physical properties of the CO2-adsorbing, nanodispersed polymers are altered by their interactions with the substrate, which in turn may impact their capture capacity. We study silica and carbon nanoporous substrates with different pore morphologies that were impregnated with polymer imine with the goal of characterizing the polymer dispersions in the pores. For silica and carbon samples, the mean densities of confined poly(ethylene imine) (PEI) were measured as functions of polymer loading and temperature using small-angle neutron scattering. Strong densification is found for imine polymers imbibed in mesoporous carbon. PEI in nanoporous silica does not experience this strong densification. At high loadings, plugs form, preferably at the pore throats, and can reduce accessible porosity. CO2 capture measurements show that PEI interactions with the substrate play an important role. PEI in carbon shows the highest capture capacity at low temperatures and the lowest CO2 adsorption at high temperatures, making it well-suited for temperature swing adsorption applications.
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Affiliation(s)
- Gernot Rother
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Uma Tumuluri
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Kuan Huang
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - William T Heller
- Spallation Neutron Source, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Sheng Dai
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, United States
| | - Jan-Michael Carrillo
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Bobby G Sumpter
- Center for Nanophase Materials Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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42
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Guo R, Sumner J, Qian S. Structure of Diisobutylene Maleic Acid Copolymer (DIBMA) and Its Lipid Particle as a “Stealth” Membrane-Mimetic for Membrane Protein Research. ACS APPLIED BIO MATERIALS 2021; 4:4760-4768. [DOI: 10.1021/acsabm.0c01626] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Rong Guo
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
- Grinnell College, Grinnell, Iowa 50112, United States
| | - Jacob Sumner
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Shuo Qian
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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43
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Ma Y, Heller WT, He L, Shelton WA, Rother G, Bharti B. Characterisation of nano-assemblies inside mesopores using neutron scattering*. Mol Phys 2021. [DOI: 10.1080/00268976.2021.1905190] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Yingzhen Ma
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, LA, USA
| | - William T. Heller
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - Lilin He
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - William A. Shelton
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, LA, USA
| | - Gernot Rother
- Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
| | - Bhuvnesh Bharti
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, LA, USA
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44
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Manalastas-Cantos K, Konarev PV, Hajizadeh NR, Kikhney AG, Petoukhov MV, Molodenskiy DS, Panjkovich A, Mertens HDT, Gruzinov A, Borges C, Jeffries CM, Svergun DI, Franke D. ATSAS 3.0: expanded functionality and new tools for small-angle scattering data analysis. J Appl Crystallogr 2021; 54:343-355. [PMID: 33833657 PMCID: PMC7941305 DOI: 10.1107/s1600576720013412] [Citation(s) in RCA: 403] [Impact Index Per Article: 134.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 10/06/2020] [Indexed: 11/11/2022] Open
Abstract
The ATSAS software suite encompasses a number of programs for the processing, visualization, analysis and modelling of small-angle scattering data, with a focus on the data measured from biological macromolecules. Here, new developments in the ATSAS 3.0 package are described. They include IMSIM, for simulating isotropic 2D scattering patterns; IMOP, to perform operations on 2D images and masks; DATRESAMPLE, a method for variance estimation of structural invariants through parametric resampling; DATFT, which computes the pair distance distribution function by a direct Fourier transform of the scattering data; PDDFFIT, to compute the scattering data from a pair distance distribution function, allowing comparison with the experimental data; a new module in DATMW for Bayesian consensus-based concentration-independent molecular weight estimation; DATMIF, an ab initio shape analysis method that optimizes the search model directly against the scattering data; DAMEMB, an application to set up the initial search volume for multiphase modelling of membrane proteins; ELLLIP, to perform quasi-atomistic modelling of liposomes with elliptical shapes; NMATOR, which models conformational changes in nucleic acid structures through normal mode analysis in torsion angle space; DAMMIX, which reconstructs the shape of an unknown intermediate in an evolving system; and LIPMIX and BILMIX, for modelling multilamellar and asymmetric lipid vesicles, respectively. In addition, technical updates were deployed to facilitate maintainability of the package, which include porting the PRIMUS graphical interface to Qt5, updating SASpy - a PyMOL plugin to run a subset of ATSAS tools - to be both Python 2 and 3 compatible, and adding utilities to facilitate mmCIF compatibility in future ATSAS releases. All these features are implemented in ATSAS 3.0, freely available for academic users at https://www.embl-hamburg.de/biosaxs/software.html.
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Affiliation(s)
- Karen Manalastas-Cantos
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
| | - Petr V. Konarev
- A.V. Shubnikov Institute of Crystallography, Federal Scientific Research Centre ‘Crystallography and Photonics’ of Russian Academy of Sciences, Leninsky prospekt 59, Moscow, 119333, Russian Federation
| | - Nelly R. Hajizadeh
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
| | - Alexey G. Kikhney
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
| | - Maxim V. Petoukhov
- A.V. Shubnikov Institute of Crystallography, Federal Scientific Research Centre ‘Crystallography and Photonics’ of Russian Academy of Sciences, Leninsky prospekt 59, Moscow, 119333, Russian Federation
| | - Dmitry S. Molodenskiy
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
| | - Alejandro Panjkovich
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
| | - Haydyn D. T. Mertens
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
| | - Andrey Gruzinov
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
| | - Clemente Borges
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
| | - Cy M. Jeffries
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
| | - Dmitri I. Svergun
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
| | - Daniel Franke
- European Molecular Biology Laboratory, Hamburg Site, Notkestrasse 85, Building 25 A, Hamburg, 22607, Germany
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A Unified User-Friendly Instrument Control and Data Acquisition System for the ORNL SANS Instrument Suite. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11031216] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
In an effort to upgrade and provide a unified and improved instrument control and data acquisition system for the Oak Ridge National Laboratory (ORNL) small-angle neutron scattering (SANS) instrument suite—biological small-angle neutron scattering instrument (Bio-SANS), the extended q-range small-angle neutron scattering diffractometer (EQ-SANS), the general-purpose small-angle neutron scattering diffractometer (GP-SANS)—beamline scientists and developers teamed up and worked closely together to design and develop a new system. We began with an in-depth analysis of user needs and requirements, covering all perspectives of control and data acquisition based on previous usage data and user feedback. Our design and implementation were guided by the principles from the latest user experience and design research and based on effective practices from our previous projects. In this article, we share details of our design process as well as prominent features of the new instrument control and data acquisition system. The new system provides a sophisticated Q-Range Planner to help scientists and users plan and execute instrument configurations easily and efficiently. The system also provides different user operation interfaces, such as wizard-type tool Panel Scan, a Scripting Tool based on Python Language, and Table Scan, all of which are tailored to different user needs. The new system further captures all the metadata to enable post-experiment data reduction and possibly automatic reduction and provides users with enhanced live displays and additional feedback at the run time. We hope our results will serve as a good example for developing a user-friendly instrument control and data acquisition system at large user facilities.
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46
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Qian S, Sharma VK, Clifton LA. Understanding the Structure and Dynamics of Complex Biomembrane Interactions by Neutron Scattering Techniques. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2020; 36:15189-15211. [PMID: 33300335 DOI: 10.1021/acs.langmuir.0c02516] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The membrane is one of the key structural materials of biology at the cellular level. Composed predominantly of a bilayer of lipids with embedded and bound proteins, it defines the boundaries of the cell and many organelles essential to life and therefore is involved in almost all biological processes. Membrane-specific interactions, such as drug binding to a membrane receptor or the interactions of an antimicrobial compound with the lipid matrix of a pathogen membrane, are of interest across the scientific disciplines. Herein we present a review, aimed at nonexperts, of the major neutron scattering techniques used in membrane studies: small-angle neutron scattering, neutron membrane diffraction, neutron reflectometry, quasielastic neutron scattering, and neutron spin echo. Neutron scattering techniques are well suited to studying biological membranes. The nondestructive nature of cold neutrons means that samples can be measured for long periods without fear of beam damage from ultraviolet, electron, or X-ray radiation, and neutron beams are highly penetrating, thus offering flexibility in samples and sample environments. Most important is the strong difference in neutron scattering lengths between the two most abundant forms of hydrogen, protium and deuterium. Changing the relative amounts of protium/deuterium in a sample allows the production of a series of neutron scattering data sets, enabling the observation of differing components within complex membrane architectures. This approach can be as simple as using the naturally occurring neutron contrast between different biomolecules to study components in a complex by changing the solution H2O/D2O ratio or as complex as selectively labeling individual components with hydrogen isotopes. This review presents an overview of each experimental technique with the neutron instrument configuration, related sample preparation and sample environment, and data analysis, highlighted by a special emphasis on using prominent neutron contrast to understand structure and dynamics. This review gives researchers a practical introduction to the often enigmatic suite of neutron beamlines, thereby lowering the barrier to taking advantage of these large-facility techniques to achieve new understandings of membranes and their interactions with other molecules.
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Affiliation(s)
- Shuo Qian
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37830, United States
| | - Veerendra Kumar Sharma
- Solid State Physics Division, Bhabha Atomic Research Centre, Mumbai 400085, India
- Homi Bhabha National Institute, Anushaktinagar, Mumbai 400094, India
| | - Luke A Clifton
- ISIS Neutron and Muon Source, Rutherford Appleton Laboratory, Harwell Campus, Didcot, Oxfordshire, U.K. OX11 0QX
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47
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The Large-Area Detector for Small-Angle Neutron Scattering on iMATERIA at J-PARC. QUANTUM BEAM SCIENCE 2020. [DOI: 10.3390/qubs4040032] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
An area detector with a central hole structure was built up for small-angle neutron scattering (SANS) on the iMATERIA instrument at Japan Proton Accelerator Research Complex (J-PARC). Linear position-sensitive detector tubes filled with 3He gas were arranged in three layers leaving a central hole. As a result of the calibration process, a SANS measurement with wide q-range from 0.007 Å−1 to 4.3 Å−1 was achieved in double-frame operation, supplying neutrons with wavelengths from 1 Å to 10 Å. As a merit of this central hole structure, neutron transmission can be measured simultaneously to reduce experimental time and effort. This is ideal for time-resolved studies, in which the sample transmission can be time-dependent, throughout the whole experiment. Additionally, the data storage system in ‘event mode’ format provides an excellent platform for such time-resolved experiments.
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48
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Tung CH, Huang GR, Chang SY, Han Y, Chen WR, Do C. Revealing the Influence of Salts on the Hydration Structure of Ionic SDS Micelles by Contrast-Variation Small-Angle Neutron Scattering. J Phys Chem Lett 2020; 11:7334-7341. [PMID: 32813537 DOI: 10.1021/acs.jpclett.0c01533] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
The influence of lithium chloride (LiCl) on the hydration structure of anionic micelles of sodium dodecyl sulfate (SDS) in water was studied using the contrast-variation small-angle neutron scattering (SANS) technique. In the past, extensive computational studies have shown that the distribution of invasive water plays a critical role in the self-organization of SDS molecules and the stability of the assemblies. However, in past scattering studies the degree of the hydration level was not examined explicitly. Here, a series of contrast-variation SANS data was analyzed to extract the intramicellar radial distributions of invasive water and SDS molecules from the evolving spectral lineshapes caused by the varying isotopic ratios of water. By addressing the intramicellar inhomogeneous distributions of water and SDS molecules, a detailed description of how the counterion association influences the micellization behavior of SDS molecules is provided. The extension of our method can be used to provide an in-depth insight into the micellization phenomenon, which is commonly found in many soft matter systems.
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Affiliation(s)
- Chi-Huan Tung
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
- Department of Materials Science and Engineering, National Tsing Hua University, Hsinchu 30013, Taiwan
- Shull Wollan Center, The University of Tennessee and Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Guan-Rong Huang
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Shou-Yi Chang
- Department of Materials Science and Engineering, National Tsing Hua University, Hsinchu 30013, Taiwan
| | - Youngkyu Han
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
- Basic Research & Innovation Division, Amorepacific Corporation R&D Center, Yongjin 17074, Republic of Korea
| | - Wei-Ren Chen
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
| | - Changwoo Do
- Neutron Scattering Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, United States
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Astner AF, Hayes DG, Pingali SV, O’Neill HM, Littrell KC, Evans BR, Urban VS. Effects of soil particles and convective transport on dispersion and aggregation of nanoplastics via small-angle neutron scattering (SANS) and ultra SANS (USANS). PLoS One 2020; 15:e0235893. [PMID: 32692771 PMCID: PMC7373282 DOI: 10.1371/journal.pone.0235893] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Accepted: 06/24/2020] [Indexed: 11/18/2022] Open
Abstract
Terrestrial nanoplastics (NPs) pose a serious threat to agricultural food production systems due to the potential harm of soil-born micro- and macroorganisms that promote soil fertility and ability of NPs to adsorb onto and penetrate into vegetables and other crops. Very little is known about the dispersion, fate and transport of NPs in soils. This is because of the challenges of analyzing terrestrial NPs by conventional microscopic techniques due to the low concentrations of NPs and absence of optical transparency in these systems. Herein, we investigate the potential utility of small-angle neutron scattering (SANS) and Ultra SANS (USANS) to probe the agglomeration behavior of NPs prepared from polybutyrate adipate terephthalate, a prominent biodegradable plastic used in agricultural mulching, in the presence of vermiculite, an artificial soil. SANS with the contrast matching technique was used to study the aggregation of NPs co-dispersed with vermiculite in aqueous media. We determined the contrast match point for vermiculite was 66% D2O / 33% H2O. At this condition, the signal for vermiculite was ~50–100%-fold lower that obtained using neat H2O or D2O as solvent. According to SANS and USANS, smaller-sized NPs (50 nm) remained dispersed in water and did not undergo size reduction or self-agglomeration, nor formed agglomerates with vermiculite. Larger-sized NPs (300–1000 nm) formed self-agglomerates and agglomerates with vermiculite, demonstrating their significant adhesion with soil. However, employment of convective transport (simulated by ex situ stirring of the slurries prior to SANS and USANS analyses) reduced the self-agglomeration, demonstrating weak NP-NP interactions. Convective transport also led to size reduction of the larger-sized NPs. Therefore, this study demonstrates the potential utility of SANS and USANS with contrast matching technique for investigating behavior of terrestrial NPs in complex soil systems.
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Affiliation(s)
- Anton F. Astner
- Biosystems Engineering and Soil Science, The University of Tennessee, Knoxville, Tennessee, United States of America
| | - Douglas G. Hayes
- Biosystems Engineering and Soil Science, The University of Tennessee, Knoxville, Tennessee, United States of America
- * E-mail: (DGH); (SVP)
| | - Sai Venkatesh Pingali
- Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America
- * E-mail: (DGH); (SVP)
| | - Hugh M. O’Neill
- Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America
| | - Kenneth C. Littrell
- Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America
| | - Barbara R. Evans
- Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America
| | - Volker S. Urban
- Oak Ridge National Laboratory, Oak Ridge, Tennessee, United States of America
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Mechanism of heat-induced gelation for ovalbumin under acidic conditions and the effect of peptides. Polym J 2020. [DOI: 10.1038/s41428-020-0382-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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