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Lord C, Haÿ V, Medjoubi K, Berland S, Keith P. Travelling in Microphis (Teleostei: Syngnathidae) Otoliths with Two-Dimensional X-ray Fluorescence Maps: Twists and Turns on the Road to Strontium Incorporation. BIOLOGY 2024; 13:446. [PMID: 38927326 PMCID: PMC11201212 DOI: 10.3390/biology13060446] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2024] [Revised: 06/04/2024] [Accepted: 06/07/2024] [Indexed: 06/28/2024]
Abstract
Indo-Pacific tropical island streams are home to freshwater pipefish (Microphis spp., Syngnathidae). Otoliths were used to uncover life history traits in four species, including a New Caledonian endemic. All four species present the same methodological challenge: their otoliths are small, fragile and mute for growth marks using basic observation tools. Strontium (Sr) is calcium substituent in the mineral lattice, driven by salinity conditions, and thus useful to study diadromous migrations. Synchrotron-based scanning X-ray fluorescence 2D high-resolution mapping allowed us to tackle the global and hyperfine strontium (Sr) distribution. We developed analytical imaging processes to retrieve biological information from otoliths from the data generated via synchrotron analysis. We uncovered plasticity in the life cycle: all species were amphidromous, apart from some freshwater residents from New Caledonia. Understanding life cycle modalities is crucial to categorize species distribution limits and to implement adapted conservation measures, especially when endemic species are at stake. 2D fine-scale images outlined the heterogeneity of Sr distribution: in addition to the trivial Sr incorporation driven by environmental ionic conditions, there is an unusual mosaic arrangement of Sr distribution and we hypothesize that biological control, especially growth during the early life stages, may sometimes overrule stoichiometry. This shows that it is worth studying otolith formation and element integration at imbricated scales, and our methods and results provide a strong basis for future works and prospects in otolith science.
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Affiliation(s)
- Clara Lord
- UMR 8067, Biologie Des Organismes Et Écosystèmes Aquatiques (BOREA), Sorbonne Université, Muséum National d’Histoire Naturelle, Université de Caen Normandie, Université Des Antilles, CNRS, IRD, CP26, 43 Rue Cuvier, 75005 Paris, France; (V.H.); (S.B.); (P.K.)
| | - Vincent Haÿ
- UMR 8067, Biologie Des Organismes Et Écosystèmes Aquatiques (BOREA), Sorbonne Université, Muséum National d’Histoire Naturelle, Université de Caen Normandie, Université Des Antilles, CNRS, IRD, CP26, 43 Rue Cuvier, 75005 Paris, France; (V.H.); (S.B.); (P.K.)
| | | | - Sophie Berland
- UMR 8067, Biologie Des Organismes Et Écosystèmes Aquatiques (BOREA), Sorbonne Université, Muséum National d’Histoire Naturelle, Université de Caen Normandie, Université Des Antilles, CNRS, IRD, CP26, 43 Rue Cuvier, 75005 Paris, France; (V.H.); (S.B.); (P.K.)
| | - Philippe Keith
- UMR 8067, Biologie Des Organismes Et Écosystèmes Aquatiques (BOREA), Sorbonne Université, Muséum National d’Histoire Naturelle, Université de Caen Normandie, Université Des Antilles, CNRS, IRD, CP26, 43 Rue Cuvier, 75005 Paris, France; (V.H.); (S.B.); (P.K.)
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Revel M, Medjoubi K, Charles S, Hursthouse A, Heise S. Mechanistic analysis of the sub chronic toxicity of La and Gd in Daphnia magna based on TKTD modelling and synchrotron X-ray fluorescence imaging. CHEMOSPHERE 2024; 353:141509. [PMID: 38403125 DOI: 10.1016/j.chemosphere.2024.141509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Revised: 12/19/2023] [Accepted: 02/19/2024] [Indexed: 02/27/2024]
Abstract
The release of lanthanides (Ln) into the environment has increased in recent decades due to their expanding applications in society. Studying their toxicity in aquatic ecosystems is urgent and challenging, with contradictory evidence presented in the literature. This study compared the biodistribution of La and Gd in Daphnia magna exposed to sub-chronic conditions and developed the first Toxicokinetic-Toxicodynamic (TKTD) model for these lanthanides with this model crustacean. D. magna were initially exposed for 7 days to concentrations close to the LC50 of La (2.10 mg L-1) and Gd (1.70 mg L-1). After exposure, half of the live daphnids were introduced in a clean media to allow depuration over 24 h, while the other organisms were directly prepared for synchrotron imaging measurements. Synchrotron X-ray fluorescence analysis revealed that metal distribution in the organisms was similar for both La and Gd, predominantly localized in the intestinal tract, even after the depuration process. These results indicate that ingested metal can adversely affect organisms under sub-chronic exposure conditions, highlighting the importance of using nominal concentrations as a more suitable indicator of metal bioavailability for risk assessment. The General Unified Threshold Model of Survival (GUTS) TKTD framework, in its reduced form (GUTS-RED), was developed for La and Gd using dissolved and nominal concentrations. D. magna were exposed for 7 days to concentrations from 0.5 to 5 mg L-1 of La or Gd and mortality monitored daily. The mechanistic model revealed a faster toxicokinetics for La than Gd and a higher toxicity for Gd than La in the organism. This study confirmed, despite similar chemical properties, the variation in both toxicity and toxicokinetics between these two metals.
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Affiliation(s)
- Marion Revel
- Faculty of Life Sciences, Hamburg University of Applied Science, Ulmenliet 20, D-21033 Hamburg, Germany; University of the West of Scotland, Paisley, PA1 2BE, UK.
| | - Kadda Medjoubi
- SOLEIL Synchrotron, L'Orme des Merisiers, Dptale 128, 91190 Saint-Aubin, France
| | - Sandrine Charles
- University Lyon 1, CNRS UMR 5558, Laboratory of Biometry and Evolutionary Biology, Villeurbanne Cedex, 69622, France
| | | | - Susanne Heise
- Faculty of Life Sciences, Hamburg University of Applied Science, Ulmenliet 20, D-21033 Hamburg, Germany
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Revel M, Medjoubi K, Rivard C, Vantelon D, Hursthouse A, Heise S. Determination of the distribution of rare earth elements La and Gd in Daphnia magna via micro and nano-SXRF imaging. ENVIRONMENTAL SCIENCE. PROCESSES & IMPACTS 2023; 25:1288-1297. [PMID: 37249563 DOI: 10.1039/d3em00133d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
Abstract
While our awareness of the toxicity of rare earth elements to aquatic organisms increases, our understanding of their direct interaction and accumulation remains limited. This study describes the acute toxicity of lanthanum (La) and gadolinium (Gd) in Daphnia magna neonates and discusses potential modes of action on the basis of the respective patterns of biodistribution. Ecotoxicological bioassays for acute toxicity were conducted and dissolved metal concentrations at the end of the tests were determined. The results showed a significant difference in nominal EC50 (immobility) between La (>30 mg L-1) and Gd (13.93 (10.92 to 17.38) mg L-1). Daphnids that were then exposed to a concentration close to the determined EC50 of Gd (15 mg L-1, nominal concentration) for 48 h and 72 h were studied by synchrotron micro and nano-X-ray fluorescence to evaluate the biodistribution of potentially accumulated metals. X-ray fluorescence analyses showed that La was mainly found in the intestinal track and appeared to accumulate in the hindgut. This accumulation might be explained by the ingestion of solid La precipitates formed in the media. In contrast, Gd could only be detected in a small amount, if at all, in the intestinal tract, but was present at a much higher concentration in the tissues and became more pronounced with longer exposure time. The solubility of Gd is higher in the media used, leading to higher dissolved concentrations and uptake into tissue in ionic form via common metal transporting proteins. By studying La and Gd biodistribution in D. magna after an acute exposure, the present study has demonstrated that different uptake pathways of solid and dissolved metal species may lead to different accumulation patterns and toxicity.
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Affiliation(s)
- Marion Revel
- Life Sciences, Hamburg University of Applied Science, Ulmenliet 20, D-21033 Hamburg, Germany.
- University of the CWest of Scotland, Paisley, PA1 2BE, UK
| | - Kadda Medjoubi
- SOLEIL synchrotron, L'Orme des Merisiers, Dptale 128, 91190 Saint-Aubin, France
| | - Camille Rivard
- SOLEIL synchrotron, L'Orme des Merisiers, Dptale 128, 91190 Saint-Aubin, France
- TRANSFORM, INRAE, 44316 Nantes, France
| | - Delphine Vantelon
- SOLEIL synchrotron, L'Orme des Merisiers, Dptale 128, 91190 Saint-Aubin, France
| | | | - Susanne Heise
- Life Sciences, Hamburg University of Applied Science, Ulmenliet 20, D-21033 Hamburg, Germany.
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Chraiki I, Chi Fru E, Somogyi A, Bouougri EH, Bankole O, Ghnahalla M, El Albani A. Blooming of a microbial community in an Ediacaran extreme volcanic lake system. Sci Rep 2023; 13:9080. [PMID: 37277544 DOI: 10.1038/s41598-023-36031-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Accepted: 05/27/2023] [Indexed: 06/07/2023] Open
Abstract
Ancient aquatic sediments are critical archives for studying early microbial life and the types of environments in which they thrived. The recently characterized Amane Tazgart microbialites in the Anti-Atlas, Morocco, are a rare and well-preserved non-marine deposit that evolved in an alkaline volcanic lake setting during the Ediacaran Period. A multiproxy geochemical toolbox reveals evidence pointing to spatio-temporal ecosystem organization and succession related to changing lake water chemistry. This is marked by secular transition from a cold/dry climate, hypersaline alkaline thermophilic and anoxic-oxic community, to a stable state warm/wet climate fully oxygenated fresh to brackish water ecosystem, predominated by oxygenic stromatolites. Extreme dissolved Arsenic concentrations suggest that these polyextremophiles required robust detoxification mechanisms to circumvent arsenic toxicity and phosphate deficiency. We propose that self-sustaining and versatile anoxic to oxic microbial ecosystems thrived in aquatic continental settings during the Ediacaran Period, when complex life co-evolved with a rise in atmospheric oxygen content.
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Affiliation(s)
- Ibtissam Chraiki
- Department of Geology, Faculty of Sciences-Semlalia, Cadi Ayyad University, Marrakesh, Morocco
| | - Ernest Chi Fru
- Centre for Geobiology and Geochemistry, College of Physical and Engineering Sciences, School of Earth and Environmental Sciences, Cardiff University, Cardiff, UK
| | - Andrea Somogyi
- Nanoscopium Beamline Synchrotron Soleil, Saint-Aubin, 91192, Gif-sur-Yvette, France
| | - El Hafid Bouougri
- Department of Geology, Faculty of Sciences-Semlalia, Cadi Ayyad University, Marrakesh, Morocco
| | - Olabode Bankole
- CNRS IC2MP UMR 7285, University of Poitiers, Poitiers, France
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Schmollinger S, Chen S, Merchant SS. Quantitative elemental imaging in eukaryotic algae. Metallomics 2023; 15:mfad025. [PMID: 37186252 PMCID: PMC10209819 DOI: 10.1093/mtomcs/mfad025] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Accepted: 03/03/2023] [Indexed: 05/17/2023]
Abstract
All organisms, fundamentally, are made from the same raw material, namely the elements of the periodic table. Biochemical diversity is achieved by how these elements are utilized, for what purpose, and in which physical location. Determining elemental distributions, especially those of trace elements that facilitate metabolism as cofactors in the active centers of essential enzymes, can determine the state of metabolism, the nutritional status, or the developmental stage of an organism. Photosynthetic eukaryotes, especially algae, are excellent subjects for quantitative analysis of elemental distribution. These microbes utilize unique metabolic pathways that require various trace nutrients at their core to enable their operation. Photosynthetic microbes also have important environmental roles as primary producers in habitats with limited nutrient supplies or toxin contaminations. Accordingly, photosynthetic eukaryotes are of great interest for biotechnological exploitation, carbon sequestration, and bioremediation, with many of the applications involving various trace elements and consequently affecting their quota and intracellular distribution. A number of diverse applications were developed for elemental imaging, allowing subcellular resolution, with X-ray fluorescence microscopy (XFM, XRF) being at the forefront, enabling quantitative descriptions of intact cells in a non-destructive method. This Tutorial Review summarizes the workflow of a quantitative, single-cell elemental distribution analysis of a eukaryotic alga using XFM.
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Affiliation(s)
- Stefan Schmollinger
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA
- Departments of Molecular and Cell Biology and Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
| | - Si Chen
- X-ray Science Division, Argonne National Laboratory, Lemont, IL 60439, USA
| | - Sabeeha S Merchant
- California Institute for Quantitative Biosciences (QB3), University of California, Berkeley, CA 94720, USA
- Departments of Molecular and Cell Biology and Plant and Microbial Biology, University of California, Berkeley, CA 94720, USA
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Haÿ V, Berland S, Medjoubi K, Somogyi A, Mennesson MI, Keith P, Lord C. Unmasking pipefish otolith using synchrotron-based scanning X-ray fluorescence. Sci Rep 2023; 13:4794. [PMID: 36959216 PMCID: PMC10036667 DOI: 10.1038/s41598-023-31798-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2022] [Accepted: 03/17/2023] [Indexed: 03/25/2023] Open
Abstract
Scientists use otoliths to trace fish life history, especially fish migrations. Otoliths incorporate signatures of individual growth and environmental use. For many species, distinct increment patterns in the otolith are difficult to discern; thus, questions remain about crucial life history information. To unravel the history of such species, we use synchrotron-based scanning X-ray fluorescence. It allows the mapping of elements on the entire otolith at a high spatial resolution. It gives access to precise fish migration history by tagging landmark signature for environmental transition and it also characterises localised growth processes at a mineral level. Freshwater pipefish, which are of conservation concern, have otoliths that are small and fragile. Growth increments are impossible to identify and count; therefore, there is a major lack of knowledge about their life history. We confirm for the first time, by mapping strontium that the two tropical pipefish species studied are diadromous (transition freshwater/marine/freshwater). Mapping of other elements uncovered the existence of different migratory routes during the marine phase. Another major breakthrough is that we can chemically count growth increments solely based on sulphur signal as it is implicated in biomineralization processes. This novel method circumvents reader bias issues and enables age estimation even for otoliths with seemingly untraceable increments. The high spatial resolution elemental mapping methods push back limits of studies on life traits or stock characterisation.
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Affiliation(s)
- Vincent Haÿ
- UMR 8067, Biologie Des Organismes Et Écosystèmes Aquatiques (BOREA), Sorbonne Université, Muséum National d'Histoire Naturelle, Université de Caen Normandie, Université Des Antilles, CNRS, IRD, CP26, 43 Rue Cuvier, 75005, Paris, France.
| | - Sophie Berland
- UMR 8067, Biologie Des Organismes Et Écosystèmes Aquatiques (BOREA), Sorbonne Université, Muséum National d'Histoire Naturelle, Université de Caen Normandie, Université Des Antilles, CNRS, IRD, CP26, 43 Rue Cuvier, 75005, Paris, France
| | | | | | - Marion I Mennesson
- UMR 8067, Biologie Des Organismes Et Écosystèmes Aquatiques (BOREA), Sorbonne Université, Muséum National d'Histoire Naturelle, Université de Caen Normandie, Université Des Antilles, CNRS, IRD, CP26, 43 Rue Cuvier, 75005, Paris, France
| | - Philippe Keith
- UMR 8067, Biologie Des Organismes Et Écosystèmes Aquatiques (BOREA), Sorbonne Université, Muséum National d'Histoire Naturelle, Université de Caen Normandie, Université Des Antilles, CNRS, IRD, CP26, 43 Rue Cuvier, 75005, Paris, France
| | - Clara Lord
- UMR 8067, Biologie Des Organismes Et Écosystèmes Aquatiques (BOREA), Sorbonne Université, Muséum National d'Histoire Naturelle, Université de Caen Normandie, Université Des Antilles, CNRS, IRD, CP26, 43 Rue Cuvier, 75005, Paris, France
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Funkner S, Niehues G, Nasse MJ, Bründermann E, Caselle M, Kehrer B, Rota L, Schönfeldt P, Schuh M, Steffen B, Steinmann JL, Weber M, Müller AS. Revealing the dynamics of ultrarelativistic non-equilibrium many-electron systems with phase space tomography. Sci Rep 2023; 13:4618. [PMID: 36944670 PMCID: PMC10030633 DOI: 10.1038/s41598-023-31196-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2022] [Accepted: 03/07/2023] [Indexed: 03/23/2023] Open
Abstract
The description of physical processes with many-particle systems is a key approach to the modeling of numerous physical systems. For example in storage rings, where ultrarelativistic particles are agglomerated in dense bunches, the modeling and measurement of their phase-space distribution is of paramount importance: at any time the phase-space distribution not only determines the complete space-time evolution but also provides fundamental performance characteristics for storage ring operation. Here, we demonstrate a non-destructive tomographic imaging technique for the 2D longitudinal phase-space distribution of ultrarelativistic electron bunches. For this purpose, we utilize a unique setup, which streams turn-by-turn near-field measurements of bunch profiles at MHz repetition rates. To demonstrate the feasibility of our method, we induce a non-equilibrium state and show that the phase-space distribution microstructuring as well as the phase-space distribution dynamics can be observed in great detail. Our approach offers a pathway to control ultrashort bunches and supports, as one example, the development of compact accelerators with low energy footprints.
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Affiliation(s)
- Stefan Funkner
- Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany.
| | - Gudrun Niehues
- Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
| | - Michael J Nasse
- Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
| | - Erik Bründermann
- Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
| | - Michele Caselle
- Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
| | - Benjamin Kehrer
- Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
| | - Lorenzo Rota
- Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
- SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA
| | - Patrik Schönfeldt
- Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
- DLR (Deutsches Zentrum für Luft und Raumfahrt) Institute of Networked Energy Systems, Carl-von-Ossietzky-Str.15, 26129, Oldenburg, Germany
| | - Marcel Schuh
- Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
| | - Bernd Steffen
- Deutsches Elektronen-Synchrotron DESY, Notkestr. 85, 22607, Hamburg, Germany
| | | | - Marc Weber
- Karlsruhe Institute of Technology, 76344, Eggenstein-Leopoldshafen, Germany
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Fehlauer T, Collin B, Angeletti B, Negahi MM, Dentant C, Chaurand P, Lallemand C, Levard C, Rose J. Multiscale imaging on Saxifraga paniculata provides new insights into yttrium uptake by plants. Sci Rep 2022; 12:18268. [PMID: 36310318 PMCID: PMC9618566 DOI: 10.1038/s41598-022-23107-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 10/25/2022] [Indexed: 12/31/2022] Open
Abstract
Yttrium (Y) has gained importance in high tech applications and, together with the other rare earth elements (REEs), is also considered to be an emerging environmental pollutant. The alpine plant Saxifraga paniculata was previously shown to display high metal tolerance and an intriguing REE accumulation potential. In this study, we analysed soil grown commercial and wild specimens of Saxifraga paniculata to assess Y accumulation and shed light on the uptake pathway. Laser ablation inductively coupled plasma mass spectrometry and synchrotron-based micro X-ray fluorescence spectroscopy was used to localise Y within the plant tissues and identify colocalized elements. Y was distributed similarly in commercial and wild specimens. Within the roots, Y was mostly located in the epidermis region. Translocation was low, but wild individuals accumulated significantly more Y than commercial ones. In plants of both origins, we observed consistent colocalization of Al, Fe, Y and Ce in all plant parts except for the hydathodes. This indicates a shared pathway during translocation and could explained by the formation of a stable organic complex with citrate, for example. Our study provides important insights into the uptake pathway of Y in S. paniculata, which can be generalised to other plants.
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Affiliation(s)
- Till Fehlauer
- grid.498067.40000 0001 0845 4216Aix Marseille Univ., CNRS, IRD, INRAE, Coll. France, CEREGE, Aix-en-Provence, France
| | - Blanche Collin
- grid.498067.40000 0001 0845 4216Aix Marseille Univ., CNRS, IRD, INRAE, Coll. France, CEREGE, Aix-en-Provence, France
| | - Bernard Angeletti
- grid.498067.40000 0001 0845 4216Aix Marseille Univ., CNRS, IRD, INRAE, Coll. France, CEREGE, Aix-en-Provence, France
| | - Mohammad Mustafa Negahi
- grid.498067.40000 0001 0845 4216Aix Marseille Univ., CNRS, IRD, INRAE, Coll. France, CEREGE, Aix-en-Provence, France
| | - Cédric Dentant
- Parc national des Écrins, Domaine de Charance, 05000 Gap, France ,grid.4444.00000 0001 2112 9282Univ. Grenoble Alpes, CNRS, Sciences Po Grenoble, Pacte, 38000 Grenoble, France
| | - Perrine Chaurand
- grid.498067.40000 0001 0845 4216Aix Marseille Univ., CNRS, IRD, INRAE, Coll. France, CEREGE, Aix-en-Provence, France
| | - Claire Lallemand
- grid.498067.40000 0001 0845 4216Aix Marseille Univ., CNRS, IRD, INRAE, Coll. France, CEREGE, Aix-en-Provence, France
| | - Clement Levard
- grid.498067.40000 0001 0845 4216Aix Marseille Univ., CNRS, IRD, INRAE, Coll. France, CEREGE, Aix-en-Provence, France
| | - Jérôme Rose
- grid.498067.40000 0001 0845 4216Aix Marseille Univ., CNRS, IRD, INRAE, Coll. France, CEREGE, Aix-en-Provence, France
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9
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Towards routine 3D characterization of intact mesoscale samples by multi-scale and multimodal scanning X-ray tomography. Sci Rep 2022; 12:16924. [PMID: 36209291 PMCID: PMC9547857 DOI: 10.1038/s41598-022-21368-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Accepted: 09/26/2022] [Indexed: 12/29/2022] Open
Abstract
Non-invasive multi-scale and multimodal 3D characterization of heterogeneous or hierarchically structured intact mesoscale samples is of paramount importance in tackling challenging scientific problems. Scanning hard X-ray tomography techniques providing simultaneous complementary 3D information are ideally suited to such studies. However, the implementation of a robust on-site workflow remains the bottleneck for the widespread application of these powerful multimodal tomography methods. In this paper, we describe the development and implementation of such a robust, holistic workflow, including semi-automatic data reconstruction. Due to its flexibility, our approach is especially well suited for on-the-fly tuning of the experiments to study features of interest progressively at different length scales. To demonstrate the performance of the method, we studied, across multiple length scales, the elemental abundances and morphology of two complex biological systems, Arabidopsis plant seeds and mouse renal papilla samples. The proposed approach opens the way towards routine multimodal 3D characterization of intact samples by providing relevant information from pertinent sample regions in a wide range of scientific fields such as biology, geology, and material sciences.
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10
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Cuif JP, Medjoubi K, Somogyi A, Dauphin Y, Bazin D. From visible light to X-ray microscopy: major steps in the evolution of developmental models for calcification of invertebrate skeletons. CR CHIM 2022. [DOI: 10.5802/crchim.125] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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11
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Colboc H, Moguelet P, Letavernier E, Frochot V, Bernaudin JF, Weil R, Rouzière S, Senet P, Bachmeyer C, Laporte N, Lucas I, Descamps V, Amode R, Brunet-Possenti F, Kluger N, Deschamps L, Dubois A, Reguer S, Somogyi A, Medjoubi K, Refregiers M, Daudon M, Bazin D. Pathologies related to abnormal deposits in dermatology: a physico-chemical approach. CR CHIM 2022. [DOI: 10.5802/crchim.153] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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12
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Nazaretski E, Coburn DS, Xu W, Ma J, Xu H, Smith R, Huang X, Yang Y, Huang L, Idir M, Kiss A, Chu YS. A new Kirkpatrick-Baez-based scanning microscope for the Submicron Resolution X-ray Spectroscopy (SRX) beamline at NSLS-II. JOURNAL OF SYNCHROTRON RADIATION 2022; 29:1284-1291. [PMID: 36073888 PMCID: PMC9455213 DOI: 10.1107/s1600577522007056] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/14/2021] [Accepted: 07/09/2022] [Indexed: 06/15/2023]
Abstract
The development, construction, and first commissioning results of a new scanning microscope installed at the 5-ID Submicron Resolution X-ray Spectroscopy (SRX) beamline at NSLS-II are reported. The developed system utilizes Kirkpatrick-Baez mirrors for X-ray focusing. The instrument is designed to enable spectromicroscopy measurements in 2D and 3D with sub-200 nm spatial resolution. The present paper focuses on the design aspects, optical considerations, and specifics of the sample scanning stage, summarizing some of the initial commissioning results.
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Affiliation(s)
- E. Nazaretski
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - D. S. Coburn
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - W. Xu
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - J. Ma
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - H. Xu
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - R. Smith
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - X. Huang
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - Y. Yang
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - L. Huang
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - M. Idir
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - A. Kiss
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
| | - Y. S. Chu
- National Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY 11973, USA
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Bazin D, Lucas IT, Rouzière S, Elkaim E, Mocuta C, Réguer S, Reid DG, Mathurin J, Dazzi A, Deniset-Besseau A, Petay M, Frochot V, Haymann JP, Letavernier E, Verpont MC, Foy E, Bouderlique E, Colboc H, Daudon M. Profile of an “at cutting edge” pathology laboratory for pathological human deposits: from nanometer to in vivo scale analysis on large scale facilities. CR CHIM 2022. [DOI: 10.5802/crchim.199] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
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14
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Van de Perre E, Bazin D, Estrade V, Bouderlique E, Wissing KM, Daudon M, Letavernier E. Randall’s plaque as the origin of idiopathic calcium oxalate stone formation: an update. CR CHIM 2022. [DOI: 10.5802/crchim.102] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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15
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Carbone D, Kalbfleisch S, Johansson U, Björling A, Kahnt M, Sala S, Stankevic T, Rodriguez-Fernandez A, Bring B, Matej Z, Bell P, Erb D, Hardion V, Weninger C, Al-Sallami H, Lidon-Simon J, Carlson S, Jerrebo A, Norsk Jensen B, Bjermo A, Åhnberg K, Roslund L. Design and performance of a dedicated coherent X-ray scanning diffraction instrument at beamline NanoMAX of MAX IV. JOURNAL OF SYNCHROTRON RADIATION 2022; 29:876-887. [PMID: 35511021 PMCID: PMC9070697 DOI: 10.1107/s1600577522001333] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/19/2021] [Accepted: 02/03/2022] [Indexed: 06/14/2023]
Abstract
The diffraction endstation of the NanoMAX beamline is designed to provide high-flux coherent X-ray nano-beams for experiments requiring many degrees of freedom for sample and detector. The endstation is equipped with high-efficiency Kirkpatrick-Baez mirror focusing optics and a two-circle goniometer supporting a positioning and scanning device, designed to carry a compact sample environment. A robot is used as a detector arm. The endstation, in continued development, has been in user operation since summer 2017.
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Affiliation(s)
- Dina Carbone
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
| | | | - Ulf Johansson
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
| | | | - Maik Kahnt
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
| | - Simone Sala
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
| | - Tomas Stankevic
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
- Microsoft Danmark ApS, Tuborg Boulevard 12, 2900 Hellerup, Denmark
| | - Angel Rodriguez-Fernandez
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
- European XFEL GmbH, Holzkoppel 4, 22869 Schenefeld, Germany
| | - Björn Bring
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
- Axis Communications, Gränden 1, 22369 Lund, Sweden
| | - Zdenek Matej
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
| | - Paul Bell
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
| | - David Erb
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
| | | | | | | | | | | | | | | | - Anders Bjermo
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
| | - Karl Åhnberg
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
| | - Linus Roslund
- MAX IV Laboratory, Lund University, 22100 Lund, Sweden
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16
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Synchrotron-Based HR-Fluorescence and Mineralogical Mapping of the Initial Growth Stages of Polynesian Cultivated Pearls Disprove the ‘Reversed Shell’ Concept. MINERALS 2022. [DOI: 10.3390/min12020172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
Abstract
In a series of Polynesian pearls collected after short cultivation periods, early post-grafting mineral deposits were characterized by high resolution synchrotron-based X-ray fluorescence with unprecedented accuracy. Morphological patterns and elemental composition are correlated through simultaneous imaging processes. Evidence that aragonite and calcite occur in neighboring units during the earliest biomineralization stages reveals that the grafting process can result in a greater degradation than usually admitted in the widely shared ‘reversed shell’ concept. Compared with ultrastructure of the pristine nacreous tablets, this method enables a precise evaluation of the possible biological changes in the biomineralization mechanism during grafting.
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17
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Johansson U, Carbone D, Kalbfleisch S, Björling A, Kahnt M, Sala S, Stankevic T, Liebi M, Rodriguez Fernandez A, Bring B, Paterson D, Thånell K, Bell P, Erb D, Weninger C, Matej Z, Roslund L, Åhnberg K, Norsk Jensen B, Tarawneh H, Mikkelsen A, Vogt U. NanoMAX: the hard X-ray nanoprobe beamline at the MAX IV Laboratory. JOURNAL OF SYNCHROTRON RADIATION 2021; 28:1935-1947. [PMID: 34738949 PMCID: PMC8570223 DOI: 10.1107/s1600577521008213] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Accepted: 08/10/2021] [Indexed: 06/01/2023]
Abstract
NanoMAX is the first hard X-ray nanoprobe beamline at the MAX IV laboratory. It utilizes the unique properties of the world's first operational multi-bend achromat storage ring to provide an intense and coherent focused beam for experiments with several methods. In this paper we present the beamline optics design in detail, show the performance figures, and give an overview of the surrounding infrastructure and the operational diffraction endstation.
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Affiliation(s)
- Ulf Johansson
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - Dina Carbone
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | | | | | - Maik Kahnt
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - Simone Sala
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - Tomas Stankevic
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - Marianne Liebi
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | | | - Björn Bring
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - David Paterson
- Australian Synchrotron, ANSTO, 800 Blackburn Road, Clayton, Victoria 3168, Australia
| | - Karina Thånell
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - Paul Bell
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - David Erb
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - Clemens Weninger
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - Zdenek Matej
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - Linus Roslund
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - Karl Åhnberg
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | | | - Hamed Tarawneh
- MAX IV Laboratory, Lund University, PO Box 118, S-221 00 Lund, Sweden
| | - Anders Mikkelsen
- Lund University, Synchrotron Radiation Research, 22100 Lund, Sweden
| | - Ulrich Vogt
- KTH Royal Institute of Technology, Department of Applied Physics, Biomedical and X-ray Physics, Albanova University Center, 106 91 Stockholm, Sweden
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18
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Chen S, Lastra RO, Paunesku T, Antipova O, Li L, Deng J, Luo Y, Wanzer MB, Popovic J, Li Y, Glasco AD, Jacobsen C, Vogt S, Woloschak GE. Development of Multi-Scale X-ray Fluorescence Tomography for Examination of Nanocomposite-Treated Biological Samples. Cancers (Basel) 2021; 13:cancers13174497. [PMID: 34503306 PMCID: PMC8430782 DOI: 10.3390/cancers13174497] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2021] [Revised: 08/25/2021] [Accepted: 08/26/2021] [Indexed: 02/06/2023] Open
Abstract
Simple Summary Metal-oxide nanomaterials enter cancer and normal cells even when not specifically targeted, and often interact with specific cellular structures and biological molecules solely due to their innate physical-chemical properties. This raises concerns for the use of nanoparticles, which can be alleviated only with rigorous studies of nanoparticle–cell interactions, studies independent of post-interaction labeling of nanomaterials. X-ray fluorescence microscopy is an imaging technique that quantifies and maps all chemical elements from the periodic table solely based on their native fluorescence excited by the incoming X-ray. We used two different instruments to interrogate the same sample in 3D at two different resolutions and determine heterogeneity of cell-to-cell interactions with nanomaterials, as well as subcellular nanoparticle distribution. This is the first example of multi-scale 3D X-ray fluorescence imaging. This work begins a new era of study on how nanoparticle-based therapies can be developed to be more predictable and safer for use. Abstract Research in cancer nanotechnology is entering its third decade, and the need to study interactions between nanomaterials and cells remains urgent. Heterogeneity of nanoparticle uptake by different cells and subcellular compartments represent the greatest obstacles to a full understanding of the entire spectrum of nanomaterials’ effects. In this work, we used flow cytometry to evaluate changes in cell cycle associated with non-targeted nanocomposite uptake by individual cells and cell populations. Analogous single cell and cell population changes in nanocomposite uptake were explored by X-ray fluorescence microscopy (XFM). Very few nanoparticles are visible by optical imaging without labeling, but labeling increases nanoparticle complexity and the risk of modified cellular uptake. XFM can be used to evaluate heterogeneity of nanocomposite uptake by directly imaging the metal atoms present in the metal-oxide nanocomposites under investigation. While XFM mapping has been performed iteratively in 2D with the same sample at different resolutions, this study is the first example of serial tomographic imaging at two different resolutions. A cluster of cells exposed to non-targeted nanocomposites was imaged with a micron-sized beam in 3D. Next, the sample was sectioned for immunohistochemistry as well as a high resolution “zoomed in” X-ray fluorescence (XRF) tomography with 80 nm beam spot size. Multiscale XRF tomography will revolutionize our ability to explore cell-to-cell differences in nanomaterial uptake.
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Affiliation(s)
- Si Chen
- X-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA; (S.C.); (O.A.); (L.L.); (J.D.); (Y.L.); (C.J.); (S.V.)
| | - Ruben Omar Lastra
- Department of Radiation Oncology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; (R.O.L.); (T.P.); (M.B.W.); (J.P.); (Y.L.); (A.D.G.)
| | - Tatjana Paunesku
- Department of Radiation Oncology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; (R.O.L.); (T.P.); (M.B.W.); (J.P.); (Y.L.); (A.D.G.)
| | - Olga Antipova
- X-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA; (S.C.); (O.A.); (L.L.); (J.D.); (Y.L.); (C.J.); (S.V.)
| | - Luxi Li
- X-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA; (S.C.); (O.A.); (L.L.); (J.D.); (Y.L.); (C.J.); (S.V.)
| | - Junjing Deng
- X-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA; (S.C.); (O.A.); (L.L.); (J.D.); (Y.L.); (C.J.); (S.V.)
| | - Yanqi Luo
- X-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA; (S.C.); (O.A.); (L.L.); (J.D.); (Y.L.); (C.J.); (S.V.)
| | - Michael Beau Wanzer
- Department of Radiation Oncology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; (R.O.L.); (T.P.); (M.B.W.); (J.P.); (Y.L.); (A.D.G.)
| | - Jelena Popovic
- Department of Radiation Oncology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; (R.O.L.); (T.P.); (M.B.W.); (J.P.); (Y.L.); (A.D.G.)
| | - Ya Li
- Department of Radiation Oncology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; (R.O.L.); (T.P.); (M.B.W.); (J.P.); (Y.L.); (A.D.G.)
| | - Alexander D. Glasco
- Department of Radiation Oncology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; (R.O.L.); (T.P.); (M.B.W.); (J.P.); (Y.L.); (A.D.G.)
| | - Chris Jacobsen
- X-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA; (S.C.); (O.A.); (L.L.); (J.D.); (Y.L.); (C.J.); (S.V.)
- Department of Physics and Astronomy, Weinberg College of Arts and Sciences, Northwestern University, Evanston, IL 60208, USA
| | - Stefan Vogt
- X-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Lemont, IL 60439, USA; (S.C.); (O.A.); (L.L.); (J.D.); (Y.L.); (C.J.); (S.V.)
| | - Gayle E. Woloschak
- Department of Radiation Oncology, Feinberg School of Medicine, Northwestern University, Chicago, IL 60611, USA; (R.O.L.); (T.P.); (M.B.W.); (J.P.); (Y.L.); (A.D.G.)
- Correspondence: ; Tel.: +1-312-503-4322
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19
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Quinn PD, Gomez-Gonzalez M, Cacho-Nerin F, Parker JE. Beam and sample movement compensation for robust spectro-microscopy measurements on a hard X-ray nanoprobe. JOURNAL OF SYNCHROTRON RADIATION 2021; 28:1528-1534. [PMID: 34475300 PMCID: PMC8415335 DOI: 10.1107/s1600577521007736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2021] [Accepted: 07/28/2021] [Indexed: 06/13/2023]
Abstract
Static and in situ nanoscale spectro-microscopy is now routinely performed on the Hard X-ray Nanoprobe beamline at Diamond and the solutions implemented to provide robust energy scanning and experimental operation are described. A software-based scheme for active feedback stabilization of X-ray beam position and monochromatic beam flux across the operating energy range of the beamline is reported, consisting of two linked feedback loops using extremum seeking and position control. Multimodal registration methods have been implemented for active compensation of drift during an experiment to compensate for sample movement during in situ experiments or from beam-induced effects.
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Affiliation(s)
- Paul D. Quinn
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - Miguel Gomez-Gonzalez
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - Fernando Cacho-Nerin
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - Julia E. Parker
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
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20
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Figon F, Hurbain I, Heiligenstein X, Trépout S, Lanoue A, Medjoubi K, Somogyi A, Delevoye C, Raposo G, Casas J. Catabolism of lysosome-related organelles in color-changing spiders supports intracellular turnover of pigments. Proc Natl Acad Sci U S A 2021; 118:e2103020118. [PMID: 34433668 PMCID: PMC8536372 DOI: 10.1073/pnas.2103020118] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Pigment organelles of vertebrates belong to the lysosome-related organelle (LRO) family, of which melanin-producing melanosomes are the prototypes. While their anabolism has been extensively unraveled through the study of melanosomes in skin melanocytes, their catabolism remains poorly known. Here, we tap into the unique ability of crab spiders to reversibly change body coloration to examine the catabolism of their pigment organelles. By combining ultrastructural and metal analyses on high-pressure frozen integuments, we first assess whether pigment organelles of crab spiders belong to the LRO family and second, how their catabolism is intracellularly processed. Using scanning transmission electron microscopy, electron tomography, and nanoscale Synchrotron-based scanning X-ray fluorescence, we show that pigment organelles possess ultrastructural and chemical hallmarks of LROs, including intraluminal vesicles and metal deposits, similar to melanosomes. Monitoring ultrastructural changes during bleaching suggests that the catabolism of pigment organelles involves the degradation and removal of their intraluminal content, possibly through lysosomal mechanisms. In contrast to skin melanosomes, anabolism and catabolism of pigments proceed within the same cell without requiring either cell death or secretion/phagocytosis. Our work hence provides support for the hypothesis that the endolysosomal system is fully functionalized for within-cell turnover of pigments, leading to functional maintenance under adverse conditions and phenotypic plasticity. First formulated for eye melanosomes in the context of human vision, the hypothesis of intracellular turnover of pigments gets unprecedented strong support from pigment organelles of spiders.
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Affiliation(s)
- Florent Figon
- Institut de Recherche sur la Biologie de l'Insecte, CNRS UMR 7261, Université de Tours, 37200 Tours, France;
| | - Ilse Hurbain
- Institut Curie, CNRS UMR 144, Structure and Membrane Compartments, Paris Sciences & Lettres (PSL) Research University, 75005 Paris, France
- Institut Curie, CNRS UMR 144, Cell and Tissue Imaging Facility (Plateforme d'Imagerie Cellulaire et Tissulaire, Infrastructures en Biologie, Santé et Agronomie [PICT-IBiSA]), PSL Research University, 75005 Paris, France
| | | | - Sylvain Trépout
- Institut Curie, INSERM U1196, CNRS UMR 9187, Université Paris-Sud, Université Paris-Saclay, 91405 Orsay, France
| | - Arnaud Lanoue
- Biomolécules et Biotechnologies Végétales, Équipe d'Accueil 2106, Université de Tours, 37200 Tours, France
| | | | | | - Cédric Delevoye
- Institut Curie, CNRS UMR 144, Structure and Membrane Compartments, Paris Sciences & Lettres (PSL) Research University, 75005 Paris, France
- Institut Curie, CNRS UMR 144, Cell and Tissue Imaging Facility (Plateforme d'Imagerie Cellulaire et Tissulaire, Infrastructures en Biologie, Santé et Agronomie [PICT-IBiSA]), PSL Research University, 75005 Paris, France
| | - Graça Raposo
- Institut Curie, CNRS UMR 144, Structure and Membrane Compartments, Paris Sciences & Lettres (PSL) Research University, 75005 Paris, France
- Institut Curie, CNRS UMR 144, Cell and Tissue Imaging Facility (Plateforme d'Imagerie Cellulaire et Tissulaire, Infrastructures en Biologie, Santé et Agronomie [PICT-IBiSA]), PSL Research University, 75005 Paris, France
| | - Jérôme Casas
- Institut de Recherche sur la Biologie de l'Insecte, CNRS UMR 7261, Université de Tours, 37200 Tours, France;
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21
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Gustavsson N, Paulus A, Martinsson I, Engdahl A, Medjoubi K, Klementiev K, Somogyi A, Deierborg T, Borondics F, Gouras GK, Klementieva O. Correlative optical photothermal infrared and X-ray fluorescence for chemical imaging of trace elements and relevant molecular structures directly in neurons. LIGHT, SCIENCE & APPLICATIONS 2021; 10:151. [PMID: 34294676 PMCID: PMC8298485 DOI: 10.1038/s41377-021-00590-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2020] [Revised: 06/20/2021] [Accepted: 07/05/2021] [Indexed: 06/07/2023]
Abstract
Alzheimer's disease (AD) is the most common cause of dementia, costing about 1% of the global economy. Failures of clinical trials targeting amyloid-β protein (Aβ), a key trigger of AD, have been explained by drug inefficiency regardless of the mechanisms of amyloid neurotoxicity, which are very difficult to address by available technologies. Here, we combine two imaging modalities that stand at opposite ends of the electromagnetic spectrum, and therefore, can be used as complementary tools to assess structural and chemical information directly in a single neuron. Combining label-free super-resolution microspectroscopy for sub-cellular imaging based on novel optical photothermal infrared (O-PTIR) and synchrotron-based X-ray fluorescence (S-XRF) nano-imaging techniques, we capture elemental distribution and fibrillary forms of amyloid-β proteins in the same neurons at an unprecedented resolution. Our results reveal that in primary AD-like neurons, iron clusters co-localize with elevated amyloid β-sheet structures and oxidized lipids. Overall, our O-PTIR/S-XRF results motivate using high-resolution multimodal microspectroscopic approaches to understand the role of molecular structures and trace elements within a single neuronal cell.
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Affiliation(s)
- Nadja Gustavsson
- Medical Microspectroscopy, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Agnes Paulus
- Medical Microspectroscopy, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
- Experimental Neuroinflammation Lab, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Isak Martinsson
- Experimental Dementia Research, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Anders Engdahl
- Medical Microspectroscopy, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Kadda Medjoubi
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Gif Sur Yvette Cedex, France
| | | | - Andrea Somogyi
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Gif Sur Yvette Cedex, France
| | - Tomas Deierborg
- Experimental Neuroinflammation Lab, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Ferenc Borondics
- Synchrotron SOLEIL, L'Orme des Merisiers, 91192, Gif Sur Yvette Cedex, France
| | - Gunnar K Gouras
- Experimental Dementia Research, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden
| | - Oxana Klementieva
- Medical Microspectroscopy, Department of Experimental Medical Science, Lund University, 22180, Lund, Sweden.
- Lund Institute for advanced Neutron and X-ray Science (LINXS), 223 70, Lund, Sweden.
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22
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Quinn PD, Alianelli L, Gomez-Gonzalez M, Mahoney D, Cacho-Nerin F, Peach A, Parker JE. The Hard X-ray Nanoprobe beamline at Diamond Light Source. JOURNAL OF SYNCHROTRON RADIATION 2021; 28:1006-1013. [PMID: 33950009 PMCID: PMC8127369 DOI: 10.1107/s1600577521002502] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2020] [Accepted: 03/06/2021] [Indexed: 05/31/2023]
Abstract
The Hard X-ray Nanoprobe beamline, I14, at Diamond Light Source is a new facility for nanoscale microscopy. The beamline was designed with an emphasis on multi-modal analysis, providing elemental mapping, speciation mapping by XANES, structural phase mapping using nano-XRD and imaging through differential phase contrast and ptychography. The 185 m-long beamline operates over a 5 keV to 23 keV energy range providing a ≤50 nm beam size for routine user experiments and a flexible scanning system allowing fast acquisition. The beamline achieves robust and stable operation by imaging the source in the vertical direction and implementing horizontally deflecting primary optics and an overfilled secondary source in the horizontal direction. This paper describes the design considerations, optical layout, aspects of the hardware engineering and scanning system in operation as well as some examples illustrating the beamline performance.
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Affiliation(s)
- Paul D. Quinn
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - Lucia Alianelli
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - Miguel Gomez-Gonzalez
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - David Mahoney
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - Fernando Cacho-Nerin
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - Andrew Peach
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
| | - Julia E. Parker
- Diamond Light Source, Harwell Science and Innovation Campus, Didcot, Oxfordshire OX11 0DE, United Kingdom
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23
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Sanchez-Cano C, Alvarez-Puebla RA, Abendroth JM, Beck T, Blick R, Cao Y, Caruso F, Chakraborty I, Chapman HN, Chen C, Cohen BE, Conceição ALC, Cormode DP, Cui D, Dawson KA, Falkenberg G, Fan C, Feliu N, Gao M, Gargioni E, Glüer CC, Grüner F, Hassan M, Hu Y, Huang Y, Huber S, Huse N, Kang Y, Khademhosseini A, Keller TF, Körnig C, Kotov NA, Koziej D, Liang XJ, Liu B, Liu S, Liu Y, Liu Z, Liz-Marzán LM, Ma X, Machicote A, Maison W, Mancuso AP, Megahed S, Nickel B, Otto F, Palencia C, Pascarelli S, Pearson A, Peñate-Medina O, Qi B, Rädler J, Richardson JJ, Rosenhahn A, Rothkamm K, Rübhausen M, Sanyal MK, Schaak RE, Schlemmer HP, Schmidt M, Schmutzler O, Schotten T, Schulz F, Sood AK, Spiers KM, Staufer T, Stemer DM, Stierle A, Sun X, Tsakanova G, Weiss PS, Weller H, Westermeier F, Xu M, Yan H, Zeng Y, Zhao Y, Zhao Y, Zhu D, Zhu Y, Parak WJ. X-ray-Based Techniques to Study the Nano-Bio Interface. ACS NANO 2021; 15:3754-3807. [PMID: 33650433 PMCID: PMC7992135 DOI: 10.1021/acsnano.0c09563] [Citation(s) in RCA: 38] [Impact Index Per Article: 12.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 01/25/2021] [Indexed: 05/03/2023]
Abstract
X-ray-based analytics are routinely applied in many fields, including physics, chemistry, materials science, and engineering. The full potential of such techniques in the life sciences and medicine, however, has not yet been fully exploited. We highlight current and upcoming advances in this direction. We describe different X-ray-based methodologies (including those performed at synchrotron light sources and X-ray free-electron lasers) and their potentials for application to investigate the nano-bio interface. The discussion is predominantly guided by asking how such methods could better help to understand and to improve nanoparticle-based drug delivery, though the concepts also apply to nano-bio interactions in general. We discuss current limitations and how they might be overcome, particularly for future use in vivo.
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Affiliation(s)
- Carlos Sanchez-Cano
- Center
for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Paseo de Miramon 182, 20014 Donostia San Sebastián, Spain
| | - Ramon A. Alvarez-Puebla
- Universitat
Rovira i Virgili, 43007 Tarragona, Spain
- ICREA, Passeig Lluís
Companys 23, 08010 Barcelona, Spain
| | - John M. Abendroth
- Department
of Materials Science and Engineering, Stanford
University, Stanford, California 94305, United States
| | - Tobias Beck
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Robert Blick
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Yuan Cao
- Department
of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States
- Biointerfaces
Institute, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Frank Caruso
- ARC
Centre of Excellence in Convergent Bio-Nano Science and Technology
and the Department of Chemical Engineering, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - Indranath Chakraborty
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Henry N. Chapman
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- Centre
for Ultrafast Imaging, Universität
Hamburg, 22761 Hamburg, Germany
- Deutsches
Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Chunying Chen
- National
Center for Nanoscience and Technology (NCNST), 100190 Beijing China
| | - Bruce E. Cohen
- The
Molecular Foundry and Division of Molecular Biophysics and Integrated
Bioimaging, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | | | - David P. Cormode
- Radiology
Department, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States
| | - Daxiang Cui
- School
of Chemistry and Chemical Engineering, Frontiers Science Center for
Transformative Molecules and National Center for Translational Medicine, Shanghai Jiao Tong University, Shanghai 200240, China
| | | | - Gerald Falkenberg
- Deutsches
Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Chunhai Fan
- School
of Chemistry and Chemical Engineering, Frontiers Science Center for
Transformative Molecules and National Center for Translational Medicine, Shanghai Jiao Tong University, Shanghai 200240, China
| | - Neus Feliu
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- CAN, Fraunhofer Institut, 20146 Hamburg, Germany
| | - Mingyuan Gao
- Department
of Radiotherapy and Radiation Oncology, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
| | - Elisabetta Gargioni
- Department
of Radiotherapy and Radiation Oncology, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
| | - Claus-C. Glüer
- Section
Biomedical Imaging, Department of Radiology and Neuroradiology, University Medical Clinic Schleswig-Holstein and Christian-Albrechts-University
Kiel, 24105 Kiel, Germany
| | - Florian Grüner
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- Universität
Hamburg and Center for Free-Electron Laser Science, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Moustapha Hassan
- Karolinska University Hospital, Huddinge, and Karolinska
Institutet, 17177 Stockholm, Sweden
| | - Yong Hu
- College of Engineering and Applied Sciences, Nanjing University, Nanjing 210093, China
| | - Yalan Huang
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Samuel Huber
- Department
of Radiotherapy and Radiation Oncology, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
| | - Nils Huse
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Yanan Kang
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Ali Khademhosseini
- Terasaki Institute for Biomedical Innovation, Los Angeles, California 90049, United States
| | - Thomas F. Keller
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- Deutsches
Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Christian Körnig
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- Universität
Hamburg and Center for Free-Electron Laser Science, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Nicholas A. Kotov
- Department
of Chemical Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States
- Biointerfaces
Institute, University of Michigan, Ann Arbor, Michigan 48109, United States
- Department of Materials Science and Engineering, University of Michigan, Ann Arbor, Michigan 48109, United States
- Michigan
Institute for Translational Nanotechnology (MITRAN), Ypsilanti, Michigan 48198, United States
| | - Dorota Koziej
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Xing-Jie Liang
- National
Center for Nanoscience and Technology (NCNST), 100190 Beijing China
| | - Beibei Liu
- Department
of Radiotherapy and Radiation Oncology, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
| | - Sijin Liu
- State Key Laboratory of Environmental Chemistry and Ecotoxicology,
Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085 China
| | - Yang Liu
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Ziyao Liu
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Luis M. Liz-Marzán
- Center
for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Paseo de Miramon 182, 20014 Donostia San Sebastián, Spain
- Ikerbasque, Basque Foundation for Science, 48013 Bilbao, Spain
- Centro de Investigación Biomédica
en Red de Bioingeniería,
Biomateriales y Nanomedicina (CIBER-BBN), Paseo de Miramon 182, 20014 Donostia-San Sebastián, Spain
| | - Xiaowei Ma
- National
Center for Nanoscience and Technology (NCNST), 100190 Beijing China
| | - Andres Machicote
- Department
of Radiotherapy and Radiation Oncology, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
| | - Wolfgang Maison
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Adrian P. Mancuso
- European XFEL, 22869 Schenefeld, Germany
- Department of Chemistry and Physics, La
Trobe Institute for Molecular
Science, La Trobe University, Melbourne 3086, Victoria, Australia
| | - Saad Megahed
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Bert Nickel
- Sektion Physik, Ludwig Maximilians Universität
München, 80539 München, Germany
| | - Ferdinand Otto
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Cristina Palencia
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | | | - Arwen Pearson
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Oula Peñate-Medina
- Section
Biomedical Imaging, Department of Radiology and Neuroradiology, University Medical Clinic Schleswig-Holstein and Christian-Albrechts-University
Kiel, 24105 Kiel, Germany
| | - Bing Qi
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Joachim Rädler
- Sektion Physik, Ludwig Maximilians Universität
München, 80539 München, Germany
| | - Joseph J. Richardson
- ARC
Centre of Excellence in Convergent Bio-Nano Science and Technology
and the Department of Chemical Engineering, The University of Melbourne, Parkville, Victoria 3010, Australia
| | - Axel Rosenhahn
- Department
of Radiotherapy and Radiation Oncology, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
| | - Kai Rothkamm
- Department
of Radiotherapy and Radiation Oncology, University Medical Center Hamburg-Eppendorf, 20246 Hamburg, Germany
| | - Michael Rübhausen
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | | | - Raymond E. Schaak
- Department of Chemistry, Department of Chemical Engineering,
and
Materials Research Institute, The Pennsylvania
State University, University Park, Pensylvania 16802, United States
| | - Heinz-Peter Schlemmer
- Department of Radiology, German Cancer
Research Center (DKFZ), 69120 Heidelberg, Germany
| | - Marius Schmidt
- Department of Physics, University
of Wisconsin-Milwaukee, 3135 N. Maryland Avenue, Milwaukee, Wisconsin 53211, United States
| | - Oliver Schmutzler
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- Universität
Hamburg and Center for Free-Electron Laser Science, Luruper Chaussee 149, 22761 Hamburg, Germany
| | | | - Florian Schulz
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - A. K. Sood
- Department of Physics, Indian Institute
of Science, Bangalore 560012, India
| | - Kathryn M. Spiers
- Deutsches
Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Theresa Staufer
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- Universität
Hamburg and Center for Free-Electron Laser Science, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Dominik M. Stemer
- California NanoSystems Institute, University
of California, Los Angeles, Los Angeles, California 90095, United States
- Department of Materials Science and Engineering, University of California, Los Angeles, Los Angeles, California 90095, United States
| | - Andreas Stierle
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- Deutsches
Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Xing Sun
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- Molecular Science and Biomedicine Laboratory (MBL) State
Key Laboratory of Chemo/Biosensing and Chemometrics College of Chemistry
and Chemical Engineering, Hunan University, Changsha 410082, P.R. China
| | - Gohar Tsakanova
- Institute of Molecular Biology of National
Academy of Sciences of
Republic of Armenia, 7 Hasratyan str., 0014 Yerevan, Armenia
- CANDLE Synchrotron Research Institute, 31 Acharyan str., 0040 Yerevan, Armenia
| | - Paul S. Weiss
- California NanoSystems Institute, University
of California, Los Angeles, Los Angeles, California 90095, United States
- Department of Materials Science and Engineering, University of California, Los Angeles, Los Angeles, California 90095, United States
- Department
of Chemistry and Biochemistry, University
of California, Los Angeles, Los Angeles, California 90095, United States
- Department of Bioengineering, University
of California, Los Angeles, Los Angeles, California 90095, United States
| | - Horst Weller
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- CAN, Fraunhofer Institut, 20146 Hamburg, Germany
| | - Fabian Westermeier
- Deutsches
Elektronen-Synchrotron DESY, Notkestraße 85, 22607 Hamburg, Germany
| | - Ming Xu
- State Key Laboratory of Environmental Chemistry and Ecotoxicology,
Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing 100085 China
| | - Huijie Yan
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Yuan Zeng
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Ying Zhao
- Karolinska University Hospital, Huddinge, and Karolinska
Institutet, 17177 Stockholm, Sweden
| | - Yuliang Zhao
- National
Center for Nanoscience and Technology (NCNST), 100190 Beijing China
| | - Dingcheng Zhu
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
| | - Ying Zhu
- Bioimaging Center, Shanghai Synchrotron Radiation Facility,
Zhangjiang Laboratory, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, China
- Division of Physical Biology, CAS Key Laboratory
of Interfacial
Physics and Technology, Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai 201800, China
| | - Wolfgang J. Parak
- Center
for Cooperative Research in Biomaterials (CIC biomaGUNE), Basque Research and Technology Alliance (BRTA), Paseo de Miramon 182, 20014 Donostia San Sebastián, Spain
- Mathematics,
Informatics, and Natural Sciences (MIN) Faculty, University of Hamburg, 20354 Hamburg, Germany
- School
of Chemistry and Chemical Engineering, Frontiers Science Center for
Transformative Molecules and National Center for Translational Medicine, Shanghai Jiao Tong University, Shanghai 200240, China
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24
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Carmona A, Porcaro F, Somogyi A, Roudeau S, Domart F, Medjoubi K, Aubert M, Isnard H, Nonell A, Rincel A, Paredes E, Vidaud C, Malard V, Bresson C, Ortega R. Cytoplasmic aggregation of uranium in human dopaminergic cells after continuous exposure to soluble uranyl at non-cytotoxic concentrations. Neurotoxicology 2020; 82:35-44. [PMID: 33166614 DOI: 10.1016/j.neuro.2020.10.015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2020] [Revised: 09/30/2020] [Accepted: 10/30/2020] [Indexed: 11/24/2022]
Abstract
Uranium exposure can lead to neurobehavioral alterations in particular of the monoaminergic system, even at non-cytotoxic concentrations. However, the mechanisms of uranium neurotoxicity after non-cytotoxic exposure are still poorly understood. In particular, imaging uranium in neurons at low intracellular concentration is still very challenging. We investigated uranium intracellular localization by means of synchrotron X-ray fluorescence imaging with high spatial resolution (< 300 nm) and high analytical sensitivity (< 1 μg.g-1 per 300 nm pixel). Neuron-like SH-SY5Y human cells differentiated into a dopaminergic phenotype were continuously exposed, for seven days, to a non-cytotoxic concentration (10 μM) of soluble natural uranyl. Cytoplasmic submicron uranium aggregates were observed accounting on average for 62 % of the intracellular uranium content. In some aggregates, uranium and iron were co-localized suggesting common metabolic pathways between uranium and iron storage. Uranium aggregates contained no calcium or phosphorous indicating that detoxification mechanisms in neuron-like cells are different from those described in bone or kidney cells. Uranium intracellular distribution was compared to fluorescently labeled organelles (lysosomes, early and late endosomes) and to fetuin-A, a high affinity uranium-binding protein. A strict correlation could not be evidenced between uranium and the labeled organelles, or with vesicles containing fetuin-A. Our results indicate a new mechanism of uranium cytoplasmic aggregation after non-cytotoxic uranyl exposure that could be involved in neuronal defense through uranium sequestration into less reactive species. The remaining soluble fraction of uranium would be responsible for protein binding and for the resulting neurotoxic effects.
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Affiliation(s)
- Asuncion Carmona
- Univ. Bordeaux, CNRS, CENBG, UMR 5797, F-33170 Gradignan, France.
| | | | - Andrea Somogyi
- Nanoscopium, Synchrotron SOLEIL Saint-Aubin, Gif-sur-Yvette Cedex, France
| | - Stéphane Roudeau
- Univ. Bordeaux, CNRS, CENBG, UMR 5797, F-33170 Gradignan, France
| | - Florelle Domart
- Univ. Bordeaux, CNRS, CENBG, UMR 5797, F-33170 Gradignan, France
| | - Kadda Medjoubi
- Nanoscopium, Synchrotron SOLEIL Saint-Aubin, Gif-sur-Yvette Cedex, France
| | - Michel Aubert
- Université Paris-Saclay, CEA, Service d'Etudes Analytiques Et De Réactivité Des Surfaces, 91191 Gif-sur-Yvette, France
| | - Hélène Isnard
- Université Paris-Saclay, CEA, Service d'Etudes Analytiques Et De Réactivité Des Surfaces, 91191 Gif-sur-Yvette, France
| | - Anthony Nonell
- Université Paris-Saclay, CEA, Service d'Etudes Analytiques Et De Réactivité Des Surfaces, 91191 Gif-sur-Yvette, France
| | - Anaïs Rincel
- Université Paris-Saclay, CEA, Service d'Etudes Analytiques Et De Réactivité Des Surfaces, 91191 Gif-sur-Yvette, France
| | - Eduardo Paredes
- Université Paris-Saclay, CEA, Service d'Etudes Analytiques Et De Réactivité Des Surfaces, 91191 Gif-sur-Yvette, France
| | - Claude Vidaud
- CEA, BIAM, Institut de Biosciences et Biotechnologies d'Aix-Marseille, CEA-Marcoule, 30207 Bagnols Sur Cèze, France
| | - Véronique Malard
- Aix Marseille Univ., CEA, CNRS, BIAM, IPM, Saint Paul-Lez-Durance F-13108, France
| | - Carole Bresson
- Université Paris-Saclay, CEA, Service d'Etudes Analytiques Et De Réactivité Des Surfaces, 91191 Gif-sur-Yvette, France
| | - Richard Ortega
- Univ. Bordeaux, CNRS, CENBG, UMR 5797, F-33170 Gradignan, France.
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25
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Hill J, Campbell S, Carini G, Chen-Wiegart YCK, Chu Y, Fluerasu A, Fukuto M, Idir M, Jakoncic J, Jarrige I, Siddons P, Tanabe T, Yager KG. Future trends in synchrotron science at NSLS-II. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2020; 32:374008. [PMID: 32568740 DOI: 10.1088/1361-648x/ab7b19] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2020] [Accepted: 02/28/2020] [Indexed: 06/11/2023]
Abstract
In this paper, we summarize briefly some of the future trends in synchrotron science as seen at the National Synchrotron Light Source II, a new, low emittance source recently commissioned at Brookhaven National Laboratory. We touch upon imaging techniques, the study of dynamics, the increasing use of multimodal approaches, the vital importance of data science, and other enabling technologies. Each are presently undergoing a time of rapid change, driving the field of synchrotron science forward at an ever increasing pace. It is truly an exciting time and one in which Roger Cowley, to whom this journal issue is dedicated, would surely be both invigorated by, and at the heart of.
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Affiliation(s)
- John Hill
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Stuart Campbell
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Gabriella Carini
- Instrumentation Division (IO), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Yu-Chen Karen Chen-Wiegart
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
- Materials Science & Chemical Engineering, Stony Brook University, Stony Brook, NY, United States of America
| | - Yong Chu
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Andrei Fluerasu
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Masafumi Fukuto
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Mourad Idir
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Jean Jakoncic
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Ignace Jarrige
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Peter Siddons
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Toshi Tanabe
- National Synchrotron Light Source II (NSLS-II), Brookhaven National Laboratory, Upton, NY, United States of America
| | - Kevin G Yager
- Center for Functional Nanomaterials (CFN), Brookhaven National Laboratory, Upton, NY, United States of America
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26
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Das S, Carmona A, Khatua K, Porcaro F, Somogyi A, Ortega R, Datta A. Manganese Mapping Using a Fluorescent Mn 2+ Sensor and Nanosynchrotron X-ray Fluorescence Reveals the Role of the Golgi Apparatus as a Manganese Storage Site. Inorg Chem 2019; 58:13724-13732. [PMID: 31503472 DOI: 10.1021/acs.inorgchem.9b01389] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Abstract
Elucidating dynamics in transition-metal distribution and localization under physiological and pathophysiological conditions is central to our understanding of metal-ion regulation. In this Forum Article, we focus on manganese and specifically recent developments that point to the relevance of the Golgi apparatus in manganese detoxification when this essential metal ion is overaccumulated because of either environmental exposure or mutations in manganese efflux transporters. In order to further evaluate the role of the Golgi apparatus as a manganese-ion storage compartment under subcytotoxic manganese levels, we use a combination of confocal microscopy using a sensitive "turn-on" fluorescent manganese sensor, M1, and nanosynchrotron X-ray fluorescence imaging to show that manganese ions are stored in the Golgi apparatus under micromolar manganese exposure concentrations. Our results, along with previous reports on manganese accumulation, now indicate a central role of the Golgi apparatus in manganese storage and trafficking under subcytotoxic manganese levels and hint toward a possible role of the Golgi apparatus in manganese storage even under physiological conditions.
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Affiliation(s)
- Sayani Das
- Department of Chemical Sciences , Tata Institute of Fundamental Research , 1 Homi Bhabha Road , Colaba, Mumbai 400005 , India
| | - Asuncion Carmona
- Chemical Imaging and Speciation , CENBG, University of Bordeaux, UMR 5797 , 33175 Gradignan , France.,CNRS, IN2P3, CENBG, UMR 5797 , 33175 Gradignan , France
| | - Kaustav Khatua
- Department of Chemical Sciences , Tata Institute of Fundamental Research , 1 Homi Bhabha Road , Colaba, Mumbai 400005 , India
| | - Francesco Porcaro
- Chemical Imaging and Speciation , CENBG, University of Bordeaux, UMR 5797 , 33175 Gradignan , France.,CNRS, IN2P3, CENBG, UMR 5797 , 33175 Gradignan , France
| | - Andrea Somogyi
- Nanoscopium Synchrotron SOLEIL Saint-Aubin , 91192 Gif-sur-Yvette Cedex , France
| | - Richard Ortega
- Chemical Imaging and Speciation , CENBG, University of Bordeaux, UMR 5797 , 33175 Gradignan , France.,CNRS, IN2P3, CENBG, UMR 5797 , 33175 Gradignan , France
| | - Ankona Datta
- Department of Chemical Sciences , Tata Institute of Fundamental Research , 1 Homi Bhabha Road , Colaba, Mumbai 400005 , India
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27
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Aubineau J, El Albani A, Bekker A, Somogyi A, Bankole OM, Macchiarelli R, Meunier A, Riboulleau A, Reynaud JY, Konhauser KO. Microbially induced potassium enrichment in Paleoproterozoic shales and implications for reverse weathering on early Earth. Nat Commun 2019; 10:2670. [PMID: 31209248 PMCID: PMC6572813 DOI: 10.1038/s41467-019-10620-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2018] [Accepted: 05/20/2019] [Indexed: 01/12/2023] Open
Abstract
Illitisation requires potassium incorporation into a smectite precursor, a process akin to reverse weathering. However, it remains unclear whether microbes facilitate K+ uptake to the sediments and whether illitisation was important in the geological past. The 2.1 billion-year-old Francevillian Series of Gabon has been shown to host mat-related structures (MRS) and, in this regard, these rocks offer a unique opportunity to test whether ancient microbes induced illitisation. Here, we show high K content confined to illite particles that are abundant in the facies bearing MRS, but not in the host sandstone and black shale. This observation suggests that microbial biofilms trapped K+ from the seawater and released it into the pore-waters during respiration, resulting in illitisation. The K-rich illite developed exclusively in the fossilized MRS thus provides a new biosignature for metasediments derived from K-feldspar-depleted rocks that were abundant crustal components on ancient Earth.
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Affiliation(s)
- Jérémie Aubineau
- UMR 7285 CNRS IC2MP, University of Poitiers, Poitiers, 86073, France
| | | | - Andrey Bekker
- Department of Earth and Planetary Sciences, University of California, Riverside, CA, 92521, USA
| | - Andrea Somogyi
- Nanoscopium Beamline Synchrotron Soleil, BP 48, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | - Olabode M Bankole
- UMR 7285 CNRS IC2MP, University of Poitiers, Poitiers, 86073, France
| | - Roberto Macchiarelli
- Department of Geosciences, University of Poitiers, Poitiers, 86073, France
- Department of Prehistory, UMR 7194 CNRS, National Museum of Natural History, Paris, 75005, France
| | - Alain Meunier
- UMR 7285 CNRS IC2MP, University of Poitiers, Poitiers, 86073, France
| | - Armelle Riboulleau
- UMR 8187 CNRS LOG, University of Lille, ULCO, Villeneuve d'Ascq, 59655, France
| | - Jean-Yves Reynaud
- UMR 8187 CNRS LOG, University of Lille, ULCO, Villeneuve d'Ascq, 59655, France
| | - Kurt O Konhauser
- Department of Earth and Atmospheric Sciences, University of Alberta, Edmonton, AB T6G 2E3, Canada
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28
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Mastrogiacomo M, Campi G, Cancedda R, Cedola A. Synchrotron radiation techniques boost the research in bone tissue engineering. Acta Biomater 2019; 89:33-46. [PMID: 30880235 DOI: 10.1016/j.actbio.2019.03.031] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2017] [Revised: 03/08/2019] [Accepted: 03/13/2019] [Indexed: 01/15/2023]
Abstract
X-ray Synchrotron radiation-based techniques, in particular Micro-tomography and Micro-diffraction, were exploited to investigate the structure of bone deposited in vivo within a porous ceramic scaffold. Bone formation was studied by implanting Mesenchymal Stem Cell (MSC) seeded ceramic scaffolds in a mouse model. Osteoblasts derived from the seeded MSC and from differentiation of cells migrated within the scaffold together with the blood vessels, deposited within the scaffold pores an organic collagenous matrix on which a precursor mineral amorphous liquid-phase, containing Ca++ and PO4-- crystallized filling the gaps between the collagen molecules. Histology offered a valid instrument to investigate the engineered tissue structure, but, unfortunately, limited itself to a macroscopic analysis. The evolution of the X-ray Synchrotron radiation-based techniques and the combination of micro X-ray diffraction with X-ray phase-contrast imaging enabled to study the dynamic of the structural and morphological changes occurring during the new bone deposition, biomineralization and vascularization. In fact, the unique features of Synchrotron radiation, is providing the high spatial resolution probe which is necessary for the study of complex materials presenting heterogeneity from micron-scale to meso- and nano-scale. Indeed, this is the occurrence in the heterogeneous and hierarchical bone tissue where an organic matter, such as the collagenous matrix, interacts with mineral nano-crystals to generate a hybrid multiscale biomaterial with unique physical properties. In this framework, the use of advanced synchrotron radiation techniques allowed to understand and to clarify fundamental aspects of the bone formation process within the bioceramic, i.e. biomineralization and vascularization, including to obtain deeper knowledge on bone deposition, mineralization and reabsorption in different health, aging and pathological conditions. In this review we present an overview of the X-ray Synchrotron radiation techniques and we provide a general outlook of their applications on bone Tissue Engineering, with a focus on our group work. STATEMENT OF SIGNIFICANCE: Synchrotron Radiation techniques for Tissue Engineering In this review we report recent applications of X-ray Synchrotron radiation-based techniques, in particular Microtomography and Microdiffraction, to investigations on the structure of ceramic scaffolds and bone tissue regeneration. Tissue engineering has made significant advances in bone regeneration by proposing the use of mesenchymal stem cells in combination with various types of scaffolds. The efficacy of the biomaterials used to date is not considered optimal in terms of resorbability and bone formation, resulting in a poor vascularization at the implant site. The review largely based on our publications in the last ten years could help the study of the regenerative model proposed. We also believe that the new imaging technologies we describe could be a starting point for the development of additional new techniques with the final aim of transferring them to the clinical practice.
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29
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Revisiting the Organic Template Model through the Microstructural Study of Shell Development in Pinctada margaritifera, the Polynesian Pearl Oyster. MINERALS 2018. [DOI: 10.3390/min8090370] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
A top-down approach to the mineralized structures and developmental steps that can be separated in the shells of Pinctada margaritifera was carried out. Detailed characterizations show that each of the two major layers usually taken into account (the outer prismatic layer and the inner nacreous layer) is actually the result of a complex process during which the microstructural patterns were progressively established. From its early growing stages in the deeper part of the periostracal grove up to the formation of the most inner nacreous layers, this species provides a demonstrative case study illustrating the leading role of specifically secreted organic structures as determinants of the crystallographic properties of the shell-building units. Gathering data established at various observational scales ranging from morphology to the nanometer level, this study allows for a reexamination of the recent and current biomineralization models.
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30
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The Prismatic Layer of Pinna: A Showcase of Methodological Problems and Preconceived Hypotheses. MINERALS 2018. [DOI: 10.3390/min8090365] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
The prismatic layer of Pinna (Mollusca) is one of the most studied models for the understanding of the biomineralization mechanisms, but our knowledge of the organic components of this layer is limited to the proteins of the soluble organic matrices. The interplay of the mineral and organic matrices is studied using scanning electron and atomic force microscopy, infra-red spectrometry, thermogravimetric analyses, aminoacids analyses, thin layer chromatography (TLC), X-ray fluorescence, X-ray Absorption near Edge Structure (XANES) and time-of-flight secondary ion mass spectrometry (TOF-SIMS). Proteins, polysaccharides and lipids are detected within the prisms and their envelopes. The role of the technical choices to study calcareous biominerals is evidenced, showing that a single analysis is not enough to decipher complex biominerals.
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31
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Hostachy S, Masuda M, Miki T, Hamachi I, Sagan S, Lequin O, Medjoubi K, Somogyi A, Delsuc N, Policar C. Graftable SCoMPIs enable the labeling and X-ray fluorescence imaging of proteins. Chem Sci 2018; 9:4483-4487. [PMID: 29896390 PMCID: PMC5958345 DOI: 10.1039/c8sc00886h] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2018] [Accepted: 04/13/2018] [Indexed: 11/21/2022] Open
Abstract
Bio-imaging techniques alternative to fluorescence microscopy are gaining increasing interest as complementary tools to visualize and analyze biological systems. Among them, X-ray fluorescence microspectroscopy provides information on the local content and distribution of heavy elements (Z ≥ 14) in cells or biological samples. In this context, similar tools to those developed for fluorescence microscopy are desired, including chemical probes or tags. In this work, we study rhenium complexes as a convenient and sensitive probe for X-ray fluorescence microspectroscopy. We demonstrate their ability to label and sense exogenously incubated or endogenous proteins inside cells.
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Affiliation(s)
- Sarah Hostachy
- Laboratoire des Biomolécules, LBM , Département de Chimie , École Normale Supérieure , PSL University , Sorbonne Université , CNRS , 75005 Paris , France .
| | - Marie Masuda
- Department of Synthetic Chemistry and Biological Chemistry , Graduate School of Engineering , Kyoto University , Kyoto 615-8510 , Japan
| | - Takayuki Miki
- Department of Synthetic Chemistry and Biological Chemistry , Graduate School of Engineering , Kyoto University , Kyoto 615-8510 , Japan
| | - Itaru Hamachi
- Department of Synthetic Chemistry and Biological Chemistry , Graduate School of Engineering , Kyoto University , Kyoto 615-8510 , Japan
| | - Sandrine Sagan
- Sorbonne Université , École Normale Supérieure , PSL University , CNRS , Laboratoire des Biomolécules, LBM , 75005 Paris , France
| | - Olivier Lequin
- Sorbonne Université , École Normale Supérieure , PSL University , CNRS , Laboratoire des Biomolécules, LBM , 75005 Paris , France
| | - Kadda Medjoubi
- Nanoscopium Synchrotron SOLEIL Saint-Aubin , 91192 , Gif-sur-Yvette Cedex , France
| | - Andrea Somogyi
- Nanoscopium Synchrotron SOLEIL Saint-Aubin , 91192 , Gif-sur-Yvette Cedex , France
| | - Nicolas Delsuc
- Laboratoire des Biomolécules, LBM , Département de Chimie , École Normale Supérieure , PSL University , Sorbonne Université , CNRS , 75005 Paris , France .
| | - Clotilde Policar
- Laboratoire des Biomolécules, LBM , Département de Chimie , École Normale Supérieure , PSL University , Sorbonne Université , CNRS , 75005 Paris , France .
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32
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Desjardins K, Bordessoule M, Pomorski M. X-ray position-sensitive duo-lateral diamond detectors at SOLEIL. JOURNAL OF SYNCHROTRON RADIATION 2018; 25:399-406. [PMID: 29488918 DOI: 10.1107/s1600577517016769] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Accepted: 11/21/2017] [Indexed: 06/08/2023]
Abstract
The performance of a diamond X-ray beam position monitor is reported. This detector consists of an ionization solid-state chamber based on a thin single-crystal chemical-vapour-deposition diamond with position-sensitive resistive electrodes in a duo-lateral configuration. The detector's linearity, homogeneity and responsivity were studied on beamlines at Synchrotron SOLEIL with various beam sizes, intensities and energies. These measurements demonstrate the large and homogeneous (absorption variation of less than 0.7% over 500 µm × 500 µm) active area of the detector, with linear responses independent of the X-ray beam spatial distribution. Due to the excellent charge collection efficiency (approaching 100%) and intensity sensitivity (0.05%), the detector allows monitoring of the incident beam flux precisely. In addition, the in-beam position resolution was compared with a theoretical analysis providing an estimation of the detector's beam position resolution capability depending on the experimental conditions (X-ray flux, energy and readout acquisition time).
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Affiliation(s)
| | | | - Michal Pomorski
- CEA-LIST, Diamond Sensors Laboratory, 91191 Gif-sur-Yvette, France
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33
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Wallander H, Wallentin J. Simulated sample heating from a nanofocused X-ray beam. JOURNAL OF SYNCHROTRON RADIATION 2017; 24:925-933. [PMID: 28862614 PMCID: PMC5580787 DOI: 10.1107/s1600577517008712] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/22/2017] [Accepted: 06/12/2017] [Indexed: 05/25/2023]
Abstract
Recent developments in synchrotron brilliance and X-ray optics are pushing the flux density in nanofocusing experiments to unprecedented levels, which increases the risk of different types of radiation damage. The effect of X-ray induced sample heating has been investigated using time-resolved and steady-state three-dimensional finite-element modelling of representative nanostructures. Simulations of a semiconductor nanowire indicate that the heat generated by X-ray absorption is efficiently transported within the nanowire, and that the temperature becomes homogeneous after about 5 ns. The most important channel for heat loss is conduction to the substrate, where the heat transfer coefficient and the interfacial area are limiting the heat transport. While convective heat transfer to air is significant, the thermal radiation is negligible. The steady-state average temperature in the nanowire is 8 K above room temperature at the reference parameters. In the absence of heat transfer to the substrate, the temperature increase at the same flux reaches 55 K in air and far beyond the melting temperature in vacuum. Reducing the size of the X-ray focus at constant flux only increases the maximum temperature marginally. These results suggest that the key strategy for reducing the X-ray induced heating is to improve the heat transfer to the surrounding.
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Affiliation(s)
- Harald Wallander
- Synchrotron Radiation Research, Lund University, Box 118, Lund 22100, Sweden
| | - Jesper Wallentin
- Synchrotron Radiation Research, Lund University, Box 118, Lund 22100, Sweden
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34
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Lemelle L, Simionovici A, Schoonjans T, Tucoulou R, Enrico E, Salomé M, Hofmann A, Cavalazzi B. Analytical requirements for quantitative X-ray fluorescence nano-imaging of metal traces in solid samples. Trends Analyt Chem 2017. [DOI: 10.1016/j.trac.2017.03.008] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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35
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Bergamaschi A, Medjoubi K, Messaoudi C, Marco S, Somogyi A. MMX-I: data-processing software for multimodal X-ray imaging and tomography. JOURNAL OF SYNCHROTRON RADIATION 2016; 23:783-794. [PMID: 27140159 PMCID: PMC4853872 DOI: 10.1107/s1600577516003052] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2015] [Accepted: 02/20/2016] [Indexed: 05/29/2023]
Abstract
A new multi-platform freeware has been developed for the processing and reconstruction of scanning multi-technique X-ray imaging and tomography datasets. The software platform aims to treat different scanning imaging techniques: X-ray fluorescence, phase, absorption and dark field and any of their combinations, thus providing an easy-to-use data processing tool for the X-ray imaging user community. A dedicated data input stream copes with the input and management of large datasets (several hundred GB) collected during a typical multi-technique fast scan at the Nanoscopium beamline and even on a standard PC. To the authors' knowledge, this is the first software tool that aims at treating all of the modalities of scanning multi-technique imaging and tomography experiments.
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Affiliation(s)
| | - Kadda Medjoubi
- Synchrotron SOLEIL, BP 48, Saint-Aubin, 91192 Gif sur Yvette, France
| | - Cédric Messaoudi
- UMR 9187, Université Paris-Saclay, CNRS, Université Paris-Saclay, F-91405 Orsay, France
- U1196, Institut Curie, INSERM, PSL Reseach University, F-91405 Orsay, France
| | - Sergio Marco
- UMR 9187, Université Paris-Saclay, CNRS, Université Paris-Saclay, F-91405 Orsay, France
- U1196, Institut Curie, INSERM, PSL Reseach University, F-91405 Orsay, France
| | - Andrea Somogyi
- Synchrotron SOLEIL, BP 48, Saint-Aubin, 91192 Gif sur Yvette, France
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36
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Jungmann-Smith JH, Bergamaschi A, Brückner M, Cartier S, Dinapoli R, Greiffenberg D, Huthwelker T, Maliakal D, Mayilyan D, Medjoubi K, Mezza D, Mozzanica A, Ramilli M, Ruder C, Schädler L, Schmitt B, Shi X, Tinti G. Towards hybrid pixel detectors for energy-dispersive or soft X-ray photon science. JOURNAL OF SYNCHROTRON RADIATION 2016; 23:385-94. [PMID: 26917124 PMCID: PMC5297903 DOI: 10.1107/s1600577515023541] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2015] [Accepted: 12/08/2015] [Indexed: 05/19/2023]
Abstract
JUNGFRAU (adJUstiNg Gain detector FoR the Aramis User station) is a two-dimensional hybrid pixel detector for photon science applications at free-electron lasers and synchrotron light sources. The JUNGFRAU 0.4 prototype presented here is specifically geared towards low-noise performance and hence soft X-ray detection. The design, geometry and readout architecture of JUNGFRAU 0.4 correspond to those of other JUNGFRAU pixel detectors, which are charge-integrating detectors with 75 µm × 75 µm pixels. Main characteristics of JUNGFRAU 0.4 are its fixed gain and r.m.s. noise of as low as 27 e(-) electronic noise charge (<100 eV) with no active cooling. The 48 × 48 pixels JUNGFRAU 0.4 prototype can be combined with a charge-sharing suppression mask directly placed on the sensor, which keeps photons from hitting the charge-sharing regions of the pixels. The mask consists of a 150 µm tungsten sheet, in which 28 µm-diameter holes are laser-drilled. The mask is aligned with the pixels. The noise and gain characterization, and single-photon detection as low as 1.2 keV are shown. The performance of JUNGFRAU 0.4 without the mask and also in the charge-sharing suppression configuration (with the mask, with a `software mask' or a `cluster finding' algorithm) is tested, compared and evaluated, in particular with respect to the removal of the charge-sharing contribution in the spectra, the detection efficiency and the photon rate capability. Energy-dispersive and imaging experiments with fluorescence X-ray irradiation from an X-ray tube and a synchrotron light source are successfully demonstrated with an r.m.s. energy resolution of 20% (no mask) and 14% (with the mask) at 1.2 keV and of 5% at 13.3 keV. The performance evaluation of the JUNGFRAU 0.4 prototype suggests that this detection system could be the starting point for a future detector development effort for either applications in the soft X-ray energy regime or for an energy-dispersive detection system.
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Affiliation(s)
| | | | - M. Brückner
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - S. Cartier
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
- Institute for Biomedical Engineering, University and ETHZ, 8092 Zürich, Switzerland
| | - R. Dinapoli
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | | | - T. Huthwelker
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - D. Maliakal
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - D. Mayilyan
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - K. Medjoubi
- Synchrotron Soleil, L’Orme des Merisiers, BP 48, Saint-Aubin, 91192 GIF-sur-Yvette Cedex, France
| | - D. Mezza
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - A. Mozzanica
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - M. Ramilli
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - Ch. Ruder
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - L. Schädler
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - B. Schmitt
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - X. Shi
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - G. Tinti
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
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37
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Martínez-Criado G, Villanova J, Tucoulou R, Salomon D, Suuronen JP, Labouré S, Guilloud C, Valls V, Barrett R, Gagliardini E, Dabin Y, Baker R, Bohic S, Cohen C, Morse J. ID16B: a hard X-ray nanoprobe beamline at the ESRF for nano-analysis. JOURNAL OF SYNCHROTRON RADIATION 2016; 23:344-52. [PMID: 26698084 PMCID: PMC5297598 DOI: 10.1107/s1600577515019839] [Citation(s) in RCA: 87] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2015] [Accepted: 10/20/2015] [Indexed: 05/20/2023]
Abstract
Within the framework of the ESRF Phase I Upgrade Programme, a new state-of-the-art synchrotron beamline ID16B has been recently developed for hard X-ray nano-analysis. The construction of ID16B was driven by research areas with major scientific and societal impact such as nanotechnology, earth and environmental sciences, and bio-medical research. Based on a canted undulator source, this long beamline provides hard X-ray nanobeams optimized mainly for spectroscopic applications, including the combination of X-ray fluorescence, X-ray diffraction, X-ray excited optical luminescence, X-ray absorption spectroscopy and 2D/3D X-ray imaging techniques. Its end-station re-uses part of the apparatus of the earlier ID22 beamline, while improving and enlarging the spectroscopic capabilities: for example, the experimental arrangement offers improved lateral spatial resolution (∼50 nm), a larger and more flexible capability for in situ experiments, and monochromatic nanobeams tunable over a wider energy range which now includes the hard X-ray regime (5-70 keV). This paper describes the characteristics of this new facility, short-term technical developments and the first scientific results.
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Affiliation(s)
- Gema Martínez-Criado
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Julie Villanova
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Rémi Tucoulou
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Damien Salomon
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | | | - Sylvain Labouré
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Cyril Guilloud
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Valentin Valls
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Raymond Barrett
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Eric Gagliardini
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Yves Dabin
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Robert Baker
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Sylvain Bohic
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - Cédric Cohen
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
| | - John Morse
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38000 Grenoble, France
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38
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Jungmann-Smith JH, Bergamaschi A, Brückner M, Cartier S, Dinapoli R, Greiffenberg D, Jaggi A, Maliakal D, Mayilyan D, Medjoubi K, Mezza D, Mozzanica A, Ramilli M, Ruder C, Schädler L, Schmitt B, Shi X, Tinti G. Radiation hardness assessment of the charge-integrating hybrid pixel detector JUNGFRAU 1.0 for photon science. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2015; 86:123110. [PMID: 26724009 DOI: 10.1063/1.4938166] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
JUNGFRAU (adJUstiNg Gain detector FoR the Aramis User station) is a two-dimensional hybrid pixel detector for photon science applications in free electron lasers, particularly SwissFEL, and synchrotron light sources. JUNGFRAU is an automatic gain switching, charge-integrating detector which covers a dynamic range of more than 10(4) photons of an energy of 12 keV with a good linearity, uniformity of response, and spatial resolving power. The JUNGFRAU 1.0 application-specific integrated circuit (ASIC) features a 256 × 256 pixel matrix of 75 × 75 μm(2) pixels and is bump-bonded to a 320 μm thick Si sensor. Modules of 2 × 4 chips cover an area of about 4 × 8 cm(2). Readout rates in excess of 2 kHz enable linear count rate capabilities of 20 MHz (at 12 keV) and 50 MHz (at 5 keV). The tolerance of JUNGFRAU to radiation is a key issue to guarantee several years of operation at free electron lasers and synchrotrons. The radiation hardness of JUNGFRAU 1.0 is tested with synchrotron radiation up to 10 MGy of delivered dose. The effect of radiation-induced changes on the noise, baseline, gain, and gain switching is evaluated post-irradiation for both the ASIC and the hybridized assembly. The bare JUNGFRAU 1.0 chip can withstand doses as high as 10 MGy with minor changes to its noise and a reduction in the preamplifier gain. The hybridized assembly, in particular the sensor, is affected by the photon irradiation which mainly shows as an increase in the leakage current. Self-healing of the system is investigated during a period of 11 weeks after the delivery of the radiation dose. Annealing radiation-induced changes by bake-out at 100 °C is investigated. It is concluded that the JUNGFRAU 1.0 pixel is sufficiently radiation-hard for its envisioned applications at SwissFEL and synchrotron beam lines.
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Affiliation(s)
| | - A Bergamaschi
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - M Brückner
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - S Cartier
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - R Dinapoli
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | | | - A Jaggi
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - D Maliakal
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - D Mayilyan
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - K Medjoubi
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin-BP 48, 91192 GIF-sur-Yvette Cedex, France
| | - D Mezza
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - A Mozzanica
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - M Ramilli
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - Ch Ruder
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - L Schädler
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - B Schmitt
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - X Shi
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
| | - G Tinti
- Paul Scherrer Institute, 5232 Villigen PSI, Switzerland
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