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Sancho ML, Ellis CA, Miller RL, Calhoun VD. Identifying Reproducibly Important EEG Markers of Schizophrenia with an Explainable Multi-Model Deep Learning Approach. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.09.579600. [PMID: 38405889 PMCID: PMC10888920 DOI: 10.1101/2024.02.09.579600] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/27/2024]
Abstract
The diagnosis of schizophrenia (SZ) can be challenging due to its diverse symptom presentation. As such, many studies have sought to identify diagnostic biomarkers of SZ using explainable machine learning methods. However, the generalizability of identified biomarkers in many machine learning-based studies is highly questionable given that most studies only analyze explanations from a small number of models. In this study, we present (1) a novel feature interaction-based explainability approach and (2) several new approaches for summarizing multi-model explanations. We implement our approach within the context of electroencephalogram (EEG) spectral power data. We further analyze both training and test set explanations with the goal of extracting generalizable insights from the models. Importantly, our analyses identify effects of SZ upon the α, β, and θ frequency bands, the left hemisphere of the brain, and interhemispheric interactions across a majority of folds. We hope that our analysis will provide helpful insights into SZ and inspire the development of robust approaches for identifying neuropsychiatric disorder biomarkers from explainable machine learning models.
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Affiliation(s)
- Martina Lapera Sancho
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, and Emory University Atlanta, USA
| | - Charles A Ellis
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, and Emory University Atlanta, USA
| | - Robyn L Miller
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, and Emory University Atlanta, USA
| | - Vince D Calhoun
- Tri-institutional Center for Translational Research in Neuroimaging and Data Science Georgia State University, Georgia Institute of Technology, and Emory University Atlanta, USA
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Yu Y, Zhao Y, Si Y, Ren Q, Ren W, Jing C, Zhang H. Estimation of the cool executive function using frontal electroencephalogram signals in first-episode schizophrenia patients. Biomed Eng Online 2016; 15:131. [PMID: 27884145 PMCID: PMC5123362 DOI: 10.1186/s12938-016-0282-y] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2016] [Accepted: 11/16/2016] [Indexed: 11/10/2022] Open
Abstract
Background In schizophrenia, executive dysfunction is the most critical cognitive impairment, and is associated with abnormal neural activities, especially in the frontal lobes. Complexity estimation using electroencephalogram (EEG) recording based on nonlinear dynamics and task performance tests have been widely used to estimate executive dysfunction in schizophrenia. Methods The present study estimated the cool executive function based on fractal dimension (FD) values of EEG data recorded from first-episode schizophrenia patients and healthy controls during the performance of three cool executive function tasks, namely, the Trail Making Test-A (TMT-A), Trail Making Test-B (TMT-B), and Tower of Hanoi tasks. Results The results show that the complexity of the frontal EEG signals that were measured using FD was different in first-episode schizophrenia patients during the manipulation of executive function. However, no differences between patients and controls were found in the FD values of the EEG data that was recorded during the performance of the Tower of Hanoi task. Conclusions These results suggest that cool executive function exhibits little impairment in first-episode schizophrenia patients.
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Affiliation(s)
- Yi Yu
- Department of Biomedical Engineering, Xinxiang Medical University, Xinxiang, Henan, People's Republic of China
| | - Yun Zhao
- Department of Biomedical Engineering, Xinxiang Medical University, Xinxiang, Henan, People's Republic of China
| | - Yajing Si
- Department of Psychology, Xinxiang Medical University, Xinxiang, Henan, People's Republic of China
| | - Qiongqiong Ren
- Department of Biomedical Engineering, Xinxiang Medical University, Xinxiang, Henan, People's Republic of China
| | - Wu Ren
- Department of Biomedical Engineering, Xinxiang Medical University, Xinxiang, Henan, People's Republic of China
| | - Changqin Jing
- Department of Life Sciences and Technology, Xinxiang Medical University, Xinxiang, Henan, People's Republic of China
| | - Hongxing Zhang
- Department of Psychology, Xinxiang Medical University, Xinxiang, Henan, People's Republic of China.
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Di Lorenzo G, Daverio A, Ferrentino F, Santarnecchi E, Ciabattini F, Monaco L, Lisi G, Barone Y, Di Lorenzo C, Niolu C, Seri S, Siracusano A. Altered resting-state EEG source functional connectivity in schizophrenia: the effect of illness duration. Front Hum Neurosci 2015; 9:234. [PMID: 25999835 PMCID: PMC4419718 DOI: 10.3389/fnhum.2015.00234] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2014] [Accepted: 04/11/2015] [Indexed: 01/14/2023] Open
Abstract
Despite the increasing body of evidence supporting the hypothesis of schizophrenia as a disconnection syndrome, studies of resting-state EEG Source Functional Connectivity (EEG-SFC) in people affected by schizophrenia are sparse. The aim of the present study was to investigate resting-state EEG-SFC in 77 stable, medicated patients with schizophrenia (SCZ) compared to 78 healthy volunteers (HV). In order to study the effect of illness duration, SCZ were divided in those with a short duration of disease (SDD; n = 25) and those with a long duration of disease (LDD; n = 52). Resting-state EEG recordings in eyes closed condition were analyzed and lagged phase synchronization (LPS) indices were calculated for each ROI pair in the source-space EEG data. In delta and theta bands, SCZ had greater EEG-SFC than HV; a higher theta band connectivity in frontal regions was observed in LDD compared with SDD. In the alpha band, SCZ showed lower frontal EEG-SFC compared with HV whereas no differences were found between LDD and SDD. In the beta1 band, SCZ had greater EEG-SFC compared with HVs and in the beta2 band, LDD presented lower frontal and parieto-temporal EEG-SFC compared with HV. In the gamma band, SDD had greater connectivity values compared with LDD and HV. This study suggests that resting state brain network connectivity is abnormally organized in schizophrenia, with different patterns for the different EEG frequency components and that EEG can be a powerful tool to further elucidate the complexity of such disordered connectivity.
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Affiliation(s)
- Giorgio Di Lorenzo
- Laboratory of Psychophysiology, Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy
| | - Andrea Daverio
- Laboratory of Psychophysiology, Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Psychiatric Clinic, Fondazione Policlinico "Tor Vergata" Rome, Italy
| | - Fabiola Ferrentino
- Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Psychiatric Clinic, Fondazione Policlinico "Tor Vergata" Rome, Italy
| | - Emiliano Santarnecchi
- Department of Medicine, Surgery and Neuroscience, University of Siena Siena, Italy ; Berenson-Allen Center for Non-Invasive Brain Stimulation, Beth Israel Medical Center, Harvard Medical School Boston, MA, USA
| | - Fabio Ciabattini
- Laboratory of Psychophysiology, Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Psychiatric Clinic, Fondazione Policlinico "Tor Vergata" Rome, Italy
| | - Leonardo Monaco
- Laboratory of Psychophysiology, Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy
| | - Giulia Lisi
- Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Psychiatric Clinic, Fondazione Policlinico "Tor Vergata" Rome, Italy
| | - Ylenia Barone
- Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Psychiatric Clinic, Fondazione Policlinico "Tor Vergata" Rome, Italy
| | | | - Cinzia Niolu
- Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Psychiatric Clinic, Fondazione Policlinico "Tor Vergata" Rome, Italy
| | - Stefano Seri
- School of Life and Health Sciences, Aston Brain Centre, Aston University Birmingham, UK
| | - Alberto Siracusano
- Laboratory of Psychophysiology, Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Chair of Psychiatry, Department of Systems Medicine, University of Rome "Tor Vergata" Rome, Italy ; Psychiatric Clinic, Fondazione Policlinico "Tor Vergata" Rome, Italy
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