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Huang Y, Zhang T, Zhang S, Zhang W, Yang L, Zhu D, Liu T, Jiang X, Han J, Guo L. Genetic Influence on Gyral Peaks. Neuroimage 2023; 280:120344. [PMID: 37619794 DOI: 10.1016/j.neuroimage.2023.120344] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Accepted: 08/21/2023] [Indexed: 08/26/2023] Open
Abstract
Genetic mechanisms have been hypothesized to be a major determinant in the formation of cortical folding. Although there is an increasing number of studies examining the heritability of cortical folding, most of them focus on sulcal pits rather than gyral peaks. Gyral peaks, which reflect the highest local foci on gyri and are consistent across individuals, remain unstudied in terms of heritability. To address this knowledge gap, we used high-resolution data from the Human Connectome Project (HCP) to perform classical twin analysis and estimate the heritability of gyral peaks across various brain regions. Our results showed that the heritability of gyral peaks was heterogeneous across different cortical regions, but relatively symmetric between hemispheres. We also found that pits and peaks are different in a variety of anatomic and functional measures. Further, we explored the relationship between the levels of heritability and the formation of cortical folding by utilizing the evolutionary timeline of gyrification. Our findings indicate that the heritability estimates of both gyral peaks and sulcal pits decrease linearly with the evolution timeline of gyrification. This suggests that the cortical folds which formed earlier during gyrification are subject to stronger genetic influences than the later ones. Moreover, the pits and peaks coupled by their time of appearance are also positively correlated in respect of their heritability estimates. These results fill the knowledge gap regarding genetic influences on gyral peaks and significantly advance our understanding of how genetic factors shape the formation of cortical folding. The comparison between peaks and pits suggests that peaks are not a simple morphological mirror of pits but could help complete the understanding of folding patterns.
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Affiliation(s)
- Ying Huang
- School of Automation, Northwestern Polytechnical University, Xi'an 710129, China; School of Information and Technology, Northwest University, Xi'an 710127, China
| | - Tuo Zhang
- School of Automation, Northwestern Polytechnical University, Xi'an 710129, China.
| | - Songyao Zhang
- School of Automation, Northwestern Polytechnical University, Xi'an 710129, China
| | - Weihan Zhang
- School of Automation, Northwestern Polytechnical University, Xi'an 710129, China
| | - Li Yang
- School of Automation, Northwestern Polytechnical University, Xi'an 710129, China
| | - Dajiang Zhu
- Computer Science & Engineering, University of Texas at Arlington, TX 76010, USA
| | - Tianming Liu
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA 30602, USA
| | - Xi Jiang
- School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610056, China
| | - Junwei Han
- School of Automation, Northwestern Polytechnical University, Xi'an 710129, China
| | - Lei Guo
- School of Automation, Northwestern Polytechnical University, Xi'an 710129, China
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2
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Hao J, Hu X, Wang L, Guo L, Han J. Functional Subdivisions of the Cerebellum in Naturalistic Paradigm Functional Magnetic Resonance Imaging. Front Neurosci 2022; 15:748561. [PMID: 34975371 PMCID: PMC8719453 DOI: 10.3389/fnins.2021.748561] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2021] [Accepted: 11/08/2021] [Indexed: 11/17/2022] Open
Abstract
Compelling evidence has suggested that the human cerebellum is engaged in a wide range of cognitive tasks besides traditional opinions of motor control, and it is organized into a set of distinct functional subregions. The existing model-driven cerebellum parcellations through resting-state functional MRI (rsfMRI) and task-fMRI are relatively coarse, introducing challenges in resolving the functions of the cerebellum especially when the brain is exposed to naturalistic environments. The current study took the advantages of the naturalistic paradigm (i.e., movie viewing) fMRI (nfMRI) to derive fine parcellations via a data-driven dual-regression-like sparse representation framework. The parcellations were quantitatively evaluated by functional homogeneity, and global and local boundary confidence. In addition, the differences of cerebellum–cerebrum functional connectivities between rsfMRI and nfMRI for some exemplar parcellations were compared to provide qualitatively functional validations. Our experimental results demonstrated that the proposed study successfully identified distinct subregions of the cerebellum. This fine parcellation may serve as a complementary solution to existing cerebellum parcellations, providing an alternative template for exploring neural activities of the cerebellum in naturalistic environments.
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Affiliation(s)
- Jianing Hao
- School of Automation, Northwestern Polytechnical University, Xi'an, China
| | - Xintao Hu
- School of Automation, Northwestern Polytechnical University, Xi'an, China
| | - Liting Wang
- School of Automation, Northwestern Polytechnical University, Xi'an, China
| | - Lei Guo
- School of Automation, Northwestern Polytechnical University, Xi'an, China
| | - Junwei Han
- School of Automation, Northwestern Polytechnical University, Xi'an, China
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3
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Zhang S, He Z, Du L, Zhang Y, Yu S, Wang R, Hu X, Jiang X, Zhang T. Joint Analysis of Functional and Structural Connectomes Between Preterm and Term Infant Brains via Canonical Correlation Analysis With Locality Preserving Projection. Front Neurosci 2021; 15:724391. [PMID: 34690672 PMCID: PMC8526737 DOI: 10.3389/fnins.2021.724391] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2021] [Accepted: 08/24/2021] [Indexed: 12/16/2022] Open
Abstract
Preterm is a worldwide problem that affects infants' lives significantly. Moreover, the early impairment is more than limited to isolated brain regions but also to global and profound negative outcomes later, such as cognitive disorder. Therefore, seeking the differences of brain connectome between preterm and term infant brains is a vital step for understanding the developmental impairment caused by preterm. Existing studies revealed that studying the relationship between brain function and structure, and further investigating their differentiable connectomes between preterm and term infant brains is a way to comprehend and unveil the differences that occur in the preterm infant brains. Therefore, in this article, we proposed a novel canonical correlation analysis (CCA) with locality preserving projection (LPP) approach to investigate the relationship between brain functional and structural connectomes and how such a relationship differs between preterm and term infant brains. CCA is proposed to study the relationship between functional and structural connections, while LPP is adopted to identify the distinguishing features from the connections which can differentiate the preterm and term brains. After investigating the whole brain connections on a fine-scale connectome approach, we successfully identified 89 functional and 97 structural connections, which mostly contributed to differentiate preterm and term infant brains from the functional MRI (fMRI) and diffusion MRI (dMRI) of the public developing Human Connectome Project (dHCP) dataset. By further exploring those identified connections, the results innovatively revealed that the identified functional connections are short-range and within the functional network. On the contrary, the identified structural connections are usually remote connections across different functional networks. In addition, these connectome-level results show the new insights that longitudinal functional changes could deviate from longitudinal structural changes in the preterm infant brains, which help us better understand the brain-behavior changes in preterm infant brains.
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Affiliation(s)
- Shu Zhang
- Center for Brain and Brain-Inspired Computing Research, School of Computer Science, Northwestern Polytechnical University, Xi’an, China
| | - Zhibin He
- School of Automation, Northwestern Polytechnical University, Xi’an, China
| | - Lei Du
- School of Automation, Northwestern Polytechnical University, Xi’an, China
| | - Yin Zhang
- School of Automation, Northwestern Polytechnical University, Xi’an, China
| | - Sigang Yu
- Center for Brain and Brain-Inspired Computing Research, School of Computer Science, Northwestern Polytechnical University, Xi’an, China
| | - Ruoyang Wang
- Center for Brain and Brain-Inspired Computing Research, School of Computer Science, Northwestern Polytechnical University, Xi’an, China
| | - Xintao Hu
- School of Automation, Northwestern Polytechnical University, Xi’an, China
| | - Xi Jiang
- School of Life Sciences and Technology, University of Electronic Science and Technology of China, Chengdu, China
| | - Tuo Zhang
- School of Automation, Northwestern Polytechnical University, Xi’an, China
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4
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Jiang X, Zhang T, Zhang S, Kendrick KM, Liu T. Fundamental functional differences between gyri and sulci: implications for brain function, cognition, and behavior. PSYCHORADIOLOGY 2021; 1:23-41. [PMID: 38665307 PMCID: PMC10939337 DOI: 10.1093/psyrad/kkab002] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/30/2020] [Revised: 01/24/2021] [Accepted: 02/02/2021] [Indexed: 04/28/2024]
Abstract
Folding of the cerebral cortex is a prominent characteristic of mammalian brains. Alterations or deficits in cortical folding are strongly correlated with abnormal brain function, cognition, and behavior. Therefore, a precise mapping between the anatomy and function of the brain is critical to our understanding of the mechanisms of brain structural architecture in both health and diseases. Gyri and sulci, the standard nomenclature for cortical anatomy, serve as building blocks to make up complex folding patterns, providing a window to decipher cortical anatomy and its relation with brain functions. Huge efforts have been devoted to this research topic from a variety of disciplines including genetics, cell biology, anatomy, neuroimaging, and neurology, as well as involving computational approaches based on machine learning and artificial intelligence algorithms. However, despite increasing progress, our understanding of the functional anatomy of gyro-sulcal patterns is still in its infancy. In this review, we present the current state of this field and provide our perspectives of the methodologies and conclusions concerning functional differentiation between gyri and sulci, as well as the supporting information from genetic, cell biology, and brain structure research. In particular, we will further present a proposed framework for attempting to interpret the dynamic mechanisms of the functional interplay between gyri and sulci. Hopefully, this review will provide a comprehensive summary of anatomo-functional relationships in the cortical gyro-sulcal system together with a consideration of how these contribute to brain function, cognition, and behavior, as well as to mental disorders.
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Affiliation(s)
- Xi Jiang
- School of Life Science and Technology, MOE Key Laboratory for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Tuo Zhang
- School of Automation, Northwestern Polytechnical University, Xi'an 710129, China
| | - Shu Zhang
- Center for Brain and Brain-Inspired Computing Research, School of Computer Science, Northwestern Polytechnical University, Xi'an 710129, China
| | - Keith M Kendrick
- School of Life Science and Technology, MOE Key Laboratory for Neuroinformation, University of Electronic Science and Technology of China, Chengdu 611731, China
| | - Tianming Liu
- Cortical Architecture Imaging and Discovery Laboratory, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA 30605, USA
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5
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Zhang S, Dong Q, Zhang W, Huang H, Zhu D, Liu T. Discovering hierarchical common brain networks via multimodal deep belief network. Med Image Anal 2019; 54:238-252. [PMID: 30954851 PMCID: PMC6487231 DOI: 10.1016/j.media.2019.03.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2018] [Revised: 02/04/2019] [Accepted: 03/27/2019] [Indexed: 01/08/2023]
Abstract
Studying a common architecture reflecting both brain's structural and functional organizations across individuals and populations in a hierarchical way has been of significant interest in the brain mapping field. Recently, deep learning models exhibited ability in extracting meaningful hierarchical structures from brain imaging data, e.g., fMRI and DTI. However, deep learning models have been rarely used to explore the relation between brain structure and function yet. In this paper, we proposed a novel multimodal deep believe network (DBN) model to discover and quantitatively represent the hierarchical organizations of common and consistent brain networks from both fMRI and DTI data. A prominent characteristic of DBN is that it is capable of extracting meaningful features from complex neuroimaging data with a hierarchical manner. With our proposed DBN model, three hierarchical layers with hundreds of common and consistent brain networks across individual brains are successfully constructed through learning a large dimension of representative features from fMRI/DTI data.
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Affiliation(s)
- Shu Zhang
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA
| | - Qinglin Dong
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA
| | - Wei Zhang
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA
| | - Heng Huang
- School of Automation, Northwestern Polytechnical University, Xi'an, 710072, China
| | - Dajiang Zhu
- The University of Texas at Arlington, Arlington, TX 76010, USA
| | - Tianming Liu
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Athens, GA, USA.
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6
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Zhang S, Jiang X, Zhang W, Zhang T, Chen H, Zhao Y, Lv J, Guo L, Howell BR, Sanchez MM, Hu X, Liu T. Joint representation of connectome-scale structural and functional profiles for identification of consistent cortical landmarks in macaque brain. Brain Imaging Behav 2018; 13:1427-1443. [PMID: 30178424 DOI: 10.1007/s11682-018-9944-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Discovery and representation of common structural and functional cortical architectures has been a significant yet challenging problem for years. Due to the remarkable variability of structural and functional cortical architectures in human brain, it is challenging to jointly represent a common cortical architecture which can comprehensively encode both structure and function characteristics. In order to better understand this challenge and considering that macaque monkey brain has much less variability in structure and function compared with human brain, in this paper, we propose a novel computational framework to apply our DICCCOL (Dense Individualized and Common Connectivity-based Cortical Landmarks) and HAFNI (Holistic Atlases of Functional Networks and Interactions) frameworks on macaque brains, in order to jointly represent structural and functional connectome-scale profiles for identification of a set of consistent and common cortical landmarks across different macaque brains based on multimodal DTI and resting state fMRI (rsfMRI) data. Experimental results demonstrate that 100 consistent and common cortical landmarks are successfully identified via the proposed framework, each of which has reasonably accurate anatomical, structural fiber connection pattern, and functional correspondences across different macaque brains. This set of 100 landmarks offer novel insights into the structural and functional cortical architectures in macaque brains.
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Affiliation(s)
- Shu Zhang
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA
| | - Xi Jiang
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA
| | - Wei Zhang
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA
| | - Tuo Zhang
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA.,School of Automation, Northwestern Polytechnical University, Xi'an, People's Republic of China
| | - Hanbo Chen
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA
| | - Yu Zhao
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA
| | - Jinglei Lv
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA.,School of Automation, Northwestern Polytechnical University, Xi'an, People's Republic of China
| | - Lei Guo
- School of Automation, Northwestern Polytechnical University, Xi'an, People's Republic of China
| | - Brittany R Howell
- Department of Psychiatry & Behavioral Sciences, Emory University School of Medicine, Atlanta, GA, USA.,Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.,Institute of Child Development, University of Minnesota, Minneapolis, MN, USA
| | - Mar M Sanchez
- Department of Psychiatry & Behavioral Sciences, Emory University School of Medicine, Atlanta, GA, USA. .,Yerkes National Primate Research Center, Emory University, Atlanta, GA, USA.
| | - Xiaoping Hu
- Department of Bioengineering, UC Riverside, Riverside, CA, USA.
| | - Tianming Liu
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA.
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7
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Zhang S, Zhao Y, Jiang X, Shen D, Liu T. Joint representation of consistent structural and functional profiles for identification of common cortical landmarks. Brain Imaging Behav 2018; 12:728-742. [PMID: 28597338 PMCID: PMC5722718 DOI: 10.1007/s11682-017-9736-5] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
In the brain mapping field, there have been significant interests in representation of structural/functional profiles to establish structural/functional landmark correspondences across individuals and populations. For example, from the structural perspective, our previous studies have identified hundreds of consistent DICCCOL (dense individualized and common connectivity-based cortical landmarks) landmarks across individuals and populations, each of which possess consistent DTI-derived fiber connection patterns. From the functional perspective, a large collection of well-characterized HAFNI (holistic atlases of functional networks and interactions) networks based on sparse representation of whole-brain fMRI signals have been identified in our prior studies. However, due to the remarkable variability of structural and functional architectures in the human brain, it is challenging for earlier studies to jointly represent the connectome-scale structural and functional profiles for establishing a common cortical architecture which can comprehensively encode both structural and functional characteristics across individuals. To address this challenge, we propose an effective computational framework to jointly represent the structural and functional profiles for identification of consistent and common cortical landmarks with both structural and functional correspondences across different brains based on DTI and fMRI data. Experimental results demonstrate that 55 structurally and functionally common cortical landmarks can be successfully identified.
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Affiliation(s)
- Shu Zhang
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA
| | - Yu Zhao
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA
| | - Xi Jiang
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA
| | - Dinggang Shen
- Department of Radiology and BRIC, University of North Carolina, Chapel Hill, NC, USA.
- Department of Brain and Cognitive Engineering, Korea University, Seoul, 02841, Republic of Korea.
| | - Tianming Liu
- Cortical Architecture Imaging and Discovery Lab, Department of Computer Science and Bioimaging Research Center, The University of Georgia, Boyd GSRC 420, Athens, GA, 30602, USA.
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8
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Gahm JK, Shi Y. Riemannian metric optimization on surfaces (RMOS) for intrinsic brain mapping in the Laplace-Beltrami embedding space. Med Image Anal 2018; 46:189-201. [PMID: 29574399 PMCID: PMC5910235 DOI: 10.1016/j.media.2018.03.004] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2017] [Revised: 01/31/2018] [Accepted: 03/13/2018] [Indexed: 11/18/2022]
Abstract
Surface mapping methods play an important role in various brain imaging studies from tracking the maturation of adolescent brains to mapping gray matter atrophy patterns in Alzheimer's disease. Popular surface mapping approaches based on spherical registration, however, have inherent numerical limitations when severe metric distortions are present during the spherical parameterization step. In this paper, we propose a novel computational framework for intrinsic surface mapping in the Laplace-Beltrami (LB) embedding space based on Riemannian metric optimization on surfaces (RMOS). Given a diffeomorphism between two surfaces, an isometry can be defined using the pullback metric, which in turn results in identical LB embeddings from the two surfaces. The proposed RMOS approach builds upon this mathematical foundation and achieves general feature-driven surface mapping in the LB embedding space by iteratively optimizing the Riemannian metric defined on the edges of triangular meshes. At the core of our framework is an optimization engine that converts an energy function for surface mapping into a distance measure in the LB embedding space, which can be effectively optimized using gradients of the LB eigen-system with respect to the Riemannian metrics. In the experimental results, we compare the RMOS algorithm with spherical registration using large-scale brain imaging data, and show that RMOS achieves superior performance in the prediction of hippocampal subfields and cortical gyral labels, and the holistic mapping of striatal surfaces for the construction of a striatal connectivity atlas from substantia nigra.
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Affiliation(s)
- Jin Kyu Gahm
- Laboratory of Neuro Imaging, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of University of Southern California, 2025 Zonal Ave.,Los Angeles, CA 90033, USA
| | - Yonggang Shi
- Laboratory of Neuro Imaging, Mark and Mary Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of University of Southern California, 2025 Zonal Ave.,Los Angeles, CA 90033, USA.
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Riemannian Metric Optimization for Connectivity-driven Surface Mapping. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION : MICCAI ... INTERNATIONAL CONFERENCE ON MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION 2016; 9900:228-236. [PMID: 28083569 DOI: 10.1007/978-3-319-46720-7_27] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
With the advance of human connectome research, there are great interests in computing diffeomorphic maps of brain surfaces with rich connectivity features. In this paper, we propose a novel framework for connectivity-driven surface mapping based on Riemannian metric optimization on surfaces (RMOS) in the Laplace-Beltrami (LB) embedding space. The mathematical foundation of our method is that we can use the pullback metric to define an isometry between surfaces for an arbitrary diffeomorphism, which in turn results in identical LB embeddings from the two surfaces. For connectivity-driven surface mapping, our goal is to compute a diffeomorphism that can match a set of connectivity features defined over anatomical surfaces. The proposed RMOS approach achieves this goal by iteratively optimizing the Riemannian metric on surfaces to match the connectivity features in the LB embedding space. At the core of our framework is an optimization approach that converts the cost function of connectivity features into a distance measure in the LB embedding space, and optimizes it using gradients of the LB eigen-system with respect to the Riemannian metric. We demonstrate our method on the mapping of thalamic surfaces according to connectivity to ten cortical regions, which we compute with the multi-shell diffusion imaging data from the Human Connectome Project (HCP). Comparisons with a state-of-the-art method show that the RMOS method can more effectively match anatomical features and detect thalamic atrophy due to normal aging.
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10
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Jiang X, Li X, Lv J, Zhao S, Zhang S, Zhang W, Zhang T, Han J, Guo L, Liu T. Temporal Dynamics Assessment of Spatial Overlap Pattern of Functional Brain Networks Reveals Novel Functional Architecture of Cerebral Cortex. IEEE Trans Biomed Eng 2016; 65:1183-1192. [PMID: 27608442 DOI: 10.1109/tbme.2016.2598728] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
Abstract
OBJECTIVE Various studies in the brain mapping field have demonstrated that there exist multiple concurrent functional networks that are spatially overlapped and interacting with each other during specific task performance to jointly realize the total brain function. Assessing such spatial overlap patterns of functional networks (SOPFNs) based on functional magnetic resonance imaging (fMRI) has thus received increasing interest for brain function studies. However, there are still two crucial issues to be addressed. First, the SOPFNs are assessed over the entire fMRI scan assuming the temporal stationarity, while possibly time-dependent dynamics of the SOPFNs is not sufficiently explored. Second, the SOPFNs are assessed within individual subjects, while group-wise consistency of the SOPFNs is largely unknown. METHODS To address the two issues, we propose a novel computational framework of group-wise sparse representation of whole-brain fMRI temporal segments to assess the temporal dynamic spatial patterns of SOPFNs that are consistent across different subjects. RESULTS Experimental results based on the recently publicly released Human Connectome Project grayordinate task fMRI data demonstrate that meaningful SOPFNs exhibiting dynamic spatial patterns across different time periods are effectively and robustly identified based on the reconstructed concurrent functional networks via the proposed framework. Specifically, those SOPFNs locate significantly more on gyral regions than on sulcal regions across different time periods. CONCLUSION These results reveal novel functional architecture of cortical gyri and sulci. SIGNIFICANCE Moreover, these results help better understand functional dynamics mechanisms of cerebral cortex in the future.
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Jiang X, Li X, Lv J, Zhang T, Zhang S, Guo L, Liu T. Sparse representation of HCP grayordinate data reveals novel functional architecture of cerebral cortex. Hum Brain Mapp 2015; 36:5301-19. [PMID: 26466353 DOI: 10.1002/hbm.23013] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Revised: 09/03/2015] [Accepted: 09/24/2015] [Indexed: 12/27/2022] Open
Abstract
The recently publicly released Human Connectome Project (HCP) grayordinate-based fMRI data not only has high spatial and temporal resolution, but also offers group-corresponding fMRI signals across a large population for the first time in the brain imaging field, thus significantly facilitating mapping the functional brain architecture with much higher resolution and in a group-wise fashion. In this article, we adopt the HCP grayordinate task-based fMRI (tfMRI) data to systematically identify and characterize task-based heterogeneous functional regions (THFRs) on cortical surface, i.e., the regions that are activated during multiple tasks conditions and contribute to multiple task-evoked systems during a specific task performance, and to assess the spatial patterns of identified THFRs on cortical gyri and sulci by applying a computational framework of sparse representations of grayordinate brain tfMRI signals. Experimental results demonstrate that both consistent task-evoked networks and intrinsic connectivity networks across all subjects and tasks in HCP grayordinate data are effectively and robustly reconstructed via the proposed sparse representation framework. Moreover, it is found that there are relatively consistent THFRs locating at bilateral parietal lobe, frontal lobe, and visual association cortices across all subjects and tasks. Particularly, those identified THFRs locate significantly more on gyral regions than on sulcal regions. These results based on sparse representation of HCP grayordinate data reveal novel functional architecture of cortical gyri and sulci, and might provide a foundation to better understand functional mechanisms of the human cerebral cortex in the future.
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Affiliation(s)
- Xi Jiang
- Department of Computer Science and Bioimaging Research Center, Cortical Architecture Imaging and Discovery Lab, The University of Georgia, Athens, Georgia
| | - Xiang Li
- Department of Computer Science and Bioimaging Research Center, Cortical Architecture Imaging and Discovery Lab, The University of Georgia, Athens, Georgia
| | - Jinglei Lv
- Department of Computer Science and Bioimaging Research Center, Cortical Architecture Imaging and Discovery Lab, The University of Georgia, Athens, Georgia.,School of Automation, Northwestern Polytechnical University, Xi'an, People's Republic of China
| | - Tuo Zhang
- Department of Computer Science and Bioimaging Research Center, Cortical Architecture Imaging and Discovery Lab, The University of Georgia, Athens, Georgia.,School of Automation, Northwestern Polytechnical University, Xi'an, People's Republic of China
| | - Shu Zhang
- Department of Computer Science and Bioimaging Research Center, Cortical Architecture Imaging and Discovery Lab, The University of Georgia, Athens, Georgia
| | - Lei Guo
- School of Automation, Northwestern Polytechnical University, Xi'an, People's Republic of China
| | - Tianming Liu
- Department of Computer Science and Bioimaging Research Center, Cortical Architecture Imaging and Discovery Lab, The University of Georgia, Athens, Georgia
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