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Romitti GS, Liberos A, Termenón-Rivas M, Barrios-Álvarez de Arcaya J, Serra D, Romero P, Calvo D, Lozano M, García-Fernández I, Sebastian R, Rodrigo M. Implementation of a Cellular Automaton for efficient simulations of atrial arrhythmias. Med Image Anal 2025; 101:103484. [PMID: 39946778 DOI: 10.1016/j.media.2025.103484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 01/16/2025] [Accepted: 01/27/2025] [Indexed: 03/05/2025]
Abstract
In silico models offer a promising advancement for studying cardiac arrhythmias and their clinical implications. However, existing detailed mathematical models often suffer from prolonged computational time compared to diagnostic needs. This study introduces a Cellular Automaton (CA) model tailored to replicate atrial electrophysiology in different stages of Atrial Fibrillation (AF), including persistent AF (PsAF). The CA, using a finite set of states, has been trained using biophysical simulations on a reduced domain for a large set of pacing conditions. Fine-tuning included tissue heterogeneity and anisotropic propagation through pacing simulations. Characterized by Action Potential Duration (APD), Diastolic Interval (DI) and Conduction Velocity (CV) for varying levels of electrical remodeling, the biophysical simulations introduced restitution curves or surfaces into the CA. Validation involved a comprehensive comparison with realistic 2D and 3D atrial models, evaluating healthy and pro-arrhythmic behaviors. Comparisons between CA and biophysical solver revealed striking proximity, with a Cycle Length difference of <10 ms in self-sustained re-entry and a 4.66±0.57 ms difference in depolarization times across the complete atrial geometry. Notably, the CA model exhibited a 80% accuracy, 96% specificity and 45% sensitivity in predicting AF inducibility under different pacing sites and substrate conditions. Additionally, the CA allowed for a 64-fold decrease in computing time compared to the biophysical solver. CA emerges as an efficient and valid model for simulation of atrial electrophysiology across different stages of AF, with potential as a general screening tool for rapid tests. While biophysical tests are recommended for investigating specific mechanisms, CA proves valuable in clinical applications for personalized therapy planning through digital twin simulations.
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Affiliation(s)
- Giada S Romitti
- Computational Multiscale Simulation Lab (CoMMLab), Department of Computer Science and Department of Electronic Engineering, Universitat de València, Av. de l'Universitat s/n, Burjassot 46100, Spain
| | - Alejandro Liberos
- Computational Multiscale Simulation Lab (CoMMLab), Department of Computer Science and Department of Electronic Engineering, Universitat de València, Av. de l'Universitat s/n, Burjassot 46100, Spain
| | - María Termenón-Rivas
- Computational Multiscale Simulation Lab (CoMMLab), Department of Computer Science and Department of Electronic Engineering, Universitat de València, Av. de l'Universitat s/n, Burjassot 46100, Spain
| | - Javier Barrios-Álvarez de Arcaya
- Computational Multiscale Simulation Lab (CoMMLab), Department of Computer Science and Department of Electronic Engineering, Universitat de València, Av. de l'Universitat s/n, Burjassot 46100, Spain
| | - Dolors Serra
- Computational Multiscale Simulation Lab (CoMMLab), Department of Computer Science and Department of Electronic Engineering, Universitat de València, Av. de l'Universitat s/n, Burjassot 46100, Spain
| | - Pau Romero
- Computational Multiscale Simulation Lab (CoMMLab), Department of Computer Science and Department of Electronic Engineering, Universitat de València, Av. de l'Universitat s/n, Burjassot 46100, Spain
| | - David Calvo
- Arrhythmia Unit, Instituto de Investigación Sanitaria Hospital Clínico San Carlos (IdISSC) and CIBERCV, Madrid, Spain
| | - Miguel Lozano
- Computational Multiscale Simulation Lab (CoMMLab), Department of Computer Science and Department of Electronic Engineering, Universitat de València, Av. de l'Universitat s/n, Burjassot 46100, Spain
| | - Ignacio García-Fernández
- Computational Multiscale Simulation Lab (CoMMLab), Department of Computer Science and Department of Electronic Engineering, Universitat de València, Av. de l'Universitat s/n, Burjassot 46100, Spain
| | - Rafael Sebastian
- Computational Multiscale Simulation Lab (CoMMLab), Department of Computer Science and Department of Electronic Engineering, Universitat de València, Av. de l'Universitat s/n, Burjassot 46100, Spain
| | - Miguel Rodrigo
- Computational Multiscale Simulation Lab (CoMMLab), Department of Computer Science and Department of Electronic Engineering, Universitat de València, Av. de l'Universitat s/n, Burjassot 46100, Spain.
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2
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Piersanti R, Bradley R, Ali SY, Quarteroni A, Dede' L, Trayanova NA. Defining myocardial fiber bundle architecture in atrial digital twins. Comput Biol Med 2025; 188:109774. [PMID: 39946790 PMCID: PMC11966639 DOI: 10.1016/j.compbiomed.2025.109774] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 12/18/2024] [Accepted: 01/29/2025] [Indexed: 02/19/2025]
Abstract
A key component in developing atrial digital twins (ADT) - virtual representations of patients' atria - is the accurate prescription of myocardial fibers which are essential for the tissue characterization. Due to the difficulty of reconstructing atrial fibers from medical imaging, a widely used strategy for fiber generation in ADT relies on mathematical models. Existing methodologies utilize semi-automatic approaches, are tailored to specific morphologies, and lack rigorous validation against imaging fiber data. In this study, we introduce a novel atrial Laplace-Dirichlet-Rule-Based Method (LDRBM) for prescribing highly detailed myofiber orientations and providing robust regional annotation in bi-atrial morphologies of any complexity. The robustness of our approach is verified in eight extremely detailed bi-atrial geometries, derived from a sub-millimeter Diffusion-Tensor-Magnetic-Resonance Imaging (DTMRI) human atrial fiber dataset. We validate the LDRBM by quantitatively recreating each of the DTMRI fiber architectures: a comprehensive comparison with DTMRI ground truth data is conducted, investigating differences between electrophysiology (EP) simulations provided by either LDRBM and DTMRI fibers. Finally, we demonstrate that the novel LDRBM outperforms current state-of-the-art (LDRBMs and Universal Atrial Coordinates) fiber models, confirming the exceptional accuracy of our methodology and the critical importance of incorporating detailed fiber orientations in EP simulations. Ultimately, this work represents a fundamental step towards the development of physics-based digital twins of the human atria, establishing a new standard for prescribing fibers in ADT.
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Affiliation(s)
- Roberto Piersanti
- MOX - Laboratory of Modeling and Scientific Computing, Dipartimento di Matematica, Politecnico di Milano, Milano, Italy; ADVANCE - Alliance for Cardiovascular Diagnostic and Treatment Innovation, Johns Hopkins University, Baltimore, USA.
| | - Ryan Bradley
- ADVANCE - Alliance for Cardiovascular Diagnostic and Treatment Innovation, Johns Hopkins University, Baltimore, USA; Research Computing, Lehigh University, Bethlehem, PA, USA
| | - Syed Yusuf Ali
- Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA
| | - Alfio Quarteroni
- MOX - Laboratory of Modeling and Scientific Computing, Dipartimento di Matematica, Politecnico di Milano, Milano, Italy; Mathematics Institute, École Polytechnique Fédérale de Lausanne, Lausanne, Switzerland
| | - Luca Dede'
- MOX - Laboratory of Modeling and Scientific Computing, Dipartimento di Matematica, Politecnico di Milano, Milano, Italy
| | - Natalia A Trayanova
- ADVANCE - Alliance for Cardiovascular Diagnostic and Treatment Innovation, Johns Hopkins University, Baltimore, USA; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, USA
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3
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Sánchez J, Llorente-Lipe I, Espinosa CB, Loewe A, Hernández-Romero I, Vicente-Puig J, Ros S, Atienza F, Carta-Bergaz A, Climent AM, Guillem MS. Enhancing premature ventricular contraction localization through electrocardiographic imaging and cardiac digital twins. Comput Biol Med 2025; 190:109994. [PMID: 40121802 DOI: 10.1016/j.compbiomed.2025.109994] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2024] [Revised: 02/01/2025] [Accepted: 03/04/2025] [Indexed: 03/25/2025]
Abstract
Premature ventricular contractions (PVCs) represent a common and clinically significant cardiac arrhythmia, contributing to a spectrum of cardiovascular disorders. Accurate localization of the origin of PVCs is essential for devising targeted therapeutic strategies and refining our comprehension of ventricular arrhythmogenesis. Traditionally, the 12-lead ECG has been the go-to diagnostic tool for PVCs. However, individual anatomical differences and inter-patient electrophysiology variability limit its effectiveness. This study presents a new method that combines electrocardiographic imaging (ECGI) with the concept of cardiac digital twins (ECGI-DT) to improve the accuracy of pinpointing the source of PVCs. By simulating a database of PVCs, we developed an ECGI-DT capable of estimating the origins of PVCs with much greater precision than possible previously. This study shows a notable improvement in identifying the initial site of PVC origin using ECGI-DT compared to ECGI alone: the average localization error dropped from 30.69 ± 23.71 mm with standard ECGI to 7.81 ± 3.82 mm using the ECGI-DT method. This marked reduction in error highlights the potential of ECGI-DT in revolutionizing PVC diagnosis and treatment. With its ability to provide more accurate and reliable data, ECGI-DT could improve the planning of catheter ablation treatments, a preferred intervention for managing PVCs that face challenges such as high costs and in some cases long procedure times.
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Affiliation(s)
- Jorge Sánchez
- Universitat Politècnica de València, Camíde Vera s/n, Valencia, 46022, Spain.
| | - Inés Llorente-Lipe
- Universitat Politècnica de València, Camíde Vera s/n, Valencia, 46022, Spain.
| | - Cristian Barrios Espinosa
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology (KIT), Kaiserstr. 12, Karlsruhe, 76131, Germany.
| | - Axel Loewe
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology (KIT), Kaiserstr. 12, Karlsruhe, 76131, Germany.
| | - Ismael Hernández-Romero
- Universitat Politècnica de València, Camíde Vera s/n, Valencia, 46022, Spain; Corify Care SL., Calle del Dr. Castelo, 44, Bajo Izquierda, Marid, 28009, Spain.
| | - Jorge Vicente-Puig
- Corify Care SL., Calle del Dr. Castelo, 44, Bajo Izquierda, Marid, 28009, Spain; Departament de Matematiques, Universitat Autonoma de Barcelona, Bellaterra, Barcelona, 08193, Spain.
| | - Santiago Ros
- Universitat Politècnica de València, Camíde Vera s/n, Valencia, 46022, Spain; Department of Cardiology, Hospital General Gregorio Marañón, Instituto de Investigación Sanitaria Gregorio Marañón (IISGM), C. del Dr. Esquerdo, 46, Marid, 28007, Spain; Center for Biomedical Research in Cardiovascular Disease Network (CIBERCV), Av. Monforte de Lemos, 3-5. Pabellón 11, Marid, 28029, Spain.
| | - Felipe Atienza
- Department of Cardiology, Hospital General Gregorio Marañón, Instituto de Investigación Sanitaria Gregorio Marañón (IISGM), C. del Dr. Esquerdo, 46, Marid, 28007, Spain; Corify Care SL., Calle del Dr. Castelo, 44, Bajo Izquierda, Marid, 28009, Spain; Center for Biomedical Research in Cardiovascular Disease Network (CIBERCV), Av. Monforte de Lemos, 3-5. Pabellón 11, Marid, 28029, Spain; Universidad Complutense de Madrid, Av. Complutense, s/n, Moncloa - Aravaca, Marid, 28040, Spain.
| | - Alejandro Carta-Bergaz
- Department of Cardiology, Hospital General Gregorio Marañón, Instituto de Investigación Sanitaria Gregorio Marañón (IISGM), C. del Dr. Esquerdo, 46, Marid, 28007, Spain; Center for Biomedical Research in Cardiovascular Disease Network (CIBERCV), Av. Monforte de Lemos, 3-5. Pabellón 11, Marid, 28029, Spain.
| | - Andreu M Climent
- Universitat Politècnica de València, Camíde Vera s/n, Valencia, 46022, Spain; Corify Care SL., Calle del Dr. Castelo, 44, Bajo Izquierda, Marid, 28009, Spain.
| | - Maria S Guillem
- Universitat Politècnica de València, Camíde Vera s/n, Valencia, 46022, Spain; Corify Care SL., Calle del Dr. Castelo, 44, Bajo Izquierda, Marid, 28009, Spain.
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Que W, Bian Y, Chen S, Zhao X, Ji Z, Hu P, Han C, Shi L. Efficient electrocardiogram generation based on cardiac electric vector simulation model. Comput Biol Med 2024; 177:108629. [PMID: 38820778 DOI: 10.1016/j.compbiomed.2024.108629] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 04/27/2024] [Accepted: 05/18/2024] [Indexed: 06/02/2024]
Abstract
This study introduces a novel Cardiac Electric Vector Simulation Model (CEVSM) to address the computational inefficiencies and low fidelity of traditional electrophysiological models in generating electrocardiograms (ECGs). Our approach leverages CEVSM to efficiently produce reliable ECG samples, facilitating data augmentation essential for the computer-aided diagnosis of myocardial infarction (MI). Significantly, experimental results show that our model dramatically reduces computation time compared to conventional models, with the self-adapting regression transformation matrix method (SRTM) providing clear advantages. SRTM not only achieves high fidelity in ECG simulations but also ensures exceptional consistency with the gold standard method, greatly enhancing MI localization accuracy by data augmentation. These advancements highlight the potential of our model to generate dependable ECG training samples, making it highly suitable for data augmentation and significantly advancing the development and validation of intelligent MI diagnostic systems. Furthermore, this study demonstrates the feasibility of applying life system simulations in the training of medical big models.
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Affiliation(s)
- Wenge Que
- Department of Automation, Tsinghua University, Beijing, 100084, China.
| | - Yingnan Bian
- School of Logistics, Henan College of Transportation, Zhengzhou, 450000, China.
| | - Shengjie Chen
- Department of Automation, Tsinghua University, Beijing, 100084, China.
| | - Xiliang Zhao
- Center for Coronary Artery Disease, Division of Cardiology, Beijing Anzhen Hospital, Capital Medical University, Beijing, 100029, China.
| | - Zehua Ji
- Department of Automation, Tsinghua University, Beijing, 100084, China.
| | - Pingge Hu
- Department of Automation, Tsinghua University, Beijing, 100084, China.
| | - Chuang Han
- School of Computer Science and Technology, Zhengzhou University of Light Industry, Zhengzhou, 450000, China.
| | - Li Shi
- Department of Automation, Tsinghua University, Beijing, 100084, China; Beijing National Research Center for Information Science and Technology, Beijing, 100084, China.
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Jaffery OA, Melki L, Slabaugh G, Good WW, Roney CH. A Review of Personalised Cardiac Computational Modelling Using Electroanatomical Mapping Data. Arrhythm Electrophysiol Rev 2024; 13:e08. [PMID: 38807744 PMCID: PMC11131150 DOI: 10.15420/aer.2023.25] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 12/27/2023] [Indexed: 05/30/2024] Open
Abstract
Computational models of cardiac electrophysiology have gradually matured during the past few decades and are now being personalised to provide patient-specific therapy guidance for improving suboptimal treatment outcomes. The predictive features of these personalised electrophysiology models hold the promise of providing optimal treatment planning, which is currently limited in the clinic owing to reliance on a population-based or average patient approach. The generation of a personalised electrophysiology model entails a sequence of steps for which a range of activation mapping, calibration methods and therapy simulation pipelines have been suggested. However, the optimal methods that can potentially constitute a clinically relevant in silico treatment are still being investigated and face limitations, such as uncertainty of electroanatomical data recordings, generation and calibration of models within clinical timelines and requirements to validate or benchmark the recovered tissue parameters. This paper is aimed at reporting techniques on the personalisation of cardiac computational models, with a focus on calibrating cardiac tissue conductivity based on electroanatomical mapping data.
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Affiliation(s)
- Ovais A Jaffery
- School of Engineering and Materials Science, Queen Mary University of London London, UK
| | - Lea Melki
- R&D Algorithms, Acutus Medical Carlsbad, CA, US
| | - Gregory Slabaugh
- Digital Environment Research Institute, Queen Mary University of London London, UK
| | | | - Caroline H Roney
- School of Engineering and Materials Science, Queen Mary University of London London, UK
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Camps J, Berg LA, Wang ZJ, Sebastian R, Riebel LL, Doste R, Zhou X, Sachetto R, Coleman J, Lawson B, Grau V, Burrage K, Bueno-Orovio A, Weber Dos Santos R, Rodriguez B. Digital twinning of the human ventricular activation sequence to Clinical 12-lead ECGs and magnetic resonance imaging using realistic Purkinje networks for in silico clinical trials. Med Image Anal 2024; 94:103108. [PMID: 38447244 DOI: 10.1016/j.media.2024.103108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 02/06/2024] [Accepted: 02/13/2024] [Indexed: 03/08/2024]
Abstract
Cardiac in silico clinical trials can virtually assess the safety and efficacy of therapies using human-based modelling and simulation. These technologies can provide mechanistic explanations for clinically observed pathological behaviour. Designing virtual cohorts for in silico trials requires exploiting clinical data to capture the physiological variability in the human population. The clinical characterisation of ventricular activation and the Purkinje network is challenging, especially non-invasively. Our study aims to present a novel digital twinning pipeline that can efficiently generate and integrate Purkinje networks into human multiscale biventricular models based on subject-specific clinical 12-lead electrocardiogram and magnetic resonance recordings. Essential novel features of the pipeline are the human-based Purkinje network generation method, personalisation considering ECG R wave progression as well as QRS morphology, and translation from reduced-order Eikonal models to equivalent biophysically-detailed monodomain ones. We demonstrate ECG simulations in line with clinical data with clinical image-based multiscale models with Purkinje in four control subjects and two hypertrophic cardiomyopathy patients (simulated and clinical QRS complexes with Pearson's correlation coefficients > 0.7). Our methods also considered possible differences in the density of Purkinje myocardial junctions in the Eikonal-based inference as regional conduction velocities. These differences translated into regional coupling effects between Purkinje and myocardial models in the monodomain formulation. In summary, we demonstrate a digital twin pipeline enabling simulations yielding clinically consistent ECGs with clinical CMR image-based biventricular multiscale models, including personalised Purkinje in healthy and cardiac disease conditions.
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Affiliation(s)
- Julia Camps
- University of Oxford, Oxford, United Kingdom.
| | | | | | | | | | - Ruben Doste
- University of Oxford, Oxford, United Kingdom
| | - Xin Zhou
- University of Oxford, Oxford, United Kingdom
| | - Rafael Sachetto
- Universidade Federal de São João del Rei, São João del Rei, MG, Brazil
| | | | - Brodie Lawson
- Queensland University of Technology, Brisbane, Australia
| | | | - Kevin Burrage
- University of Oxford, Oxford, United Kingdom; Queensland University of Technology, Brisbane, Australia
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7
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Pilia N, Schuler S, Rees M, Moik G, Potyagaylo D, Dössel O, Loewe A. Non-invasive localization of the ventricular excitation origin without patient-specific geometries using deep learning. Artif Intell Med 2023; 143:102619. [PMID: 37673581 DOI: 10.1016/j.artmed.2023.102619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2022] [Revised: 06/18/2023] [Accepted: 06/24/2023] [Indexed: 09/08/2023]
Abstract
Cardiovascular diseases account for 17 million deaths per year worldwide. Of these, 25% are categorized as sudden cardiac death, which can be related to ventricular tachycardia (VT). This type of arrhythmia can be caused by focal activation sources outside the sinus node. Catheter ablation of these foci is a curative treatment in order to inactivate the abnormal triggering activity. However, the localization procedure is usually time-consuming and requires an invasive procedure in the catheter lab. To facilitate and expedite the treatment, we present two novel localization support techniques based on convolutional neural networks (CNNs) that address these clinical needs. In contrast to existing methods, our approaches were designed to be independent of the patient-specific geometry and directly applicable to surface ECG signals, while also delivering a binary transmural position. Moreover, one of the method's outputs can be interpreted as several ranked solutions. The CNNs were trained on a dataset containing only simulated data and evaluated both on simulated test data and clinical data. On a novel large and open simulated dataset, the median test error was below 3 mm. The median localization error on the unseen clinical data ranged from 32 mm to 41 mm without optimizing the pre-processing and CNN to the clinical data. Interpreting the output of one of the approaches as ranked solutions, the best median error of the top-3 solutions decreased to 20 mm on the clinical data. The transmural position was correctly detected in up to 82% of all clinical cases. These results demonstrate a proof of principle to utilize CNNs to localize the activation source without the intrinsic need for patient-specific geometrical information. Furthermore, providing multiple solutions can assist physicians in identifying the true activation source amongst more than one possible location. With further optimization to clinical data, these methods have high potential to accelerate clinical interventions, replace certain steps within these procedures and consequently reduce procedural risk and improve VT patient outcomes.
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Affiliation(s)
- Nicolas Pilia
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany.
| | - Steffen Schuler
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Maike Rees
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Gerald Moik
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | | | - Olaf Dössel
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
| | - Axel Loewe
- Institute of Biomedical Engineering, Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
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