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Number Cited by Other Article(s)
1
Xia X, Liu Y, Zheng C, Zhang X, Wu Q, Gao X, Zeng X, Su Y. Evolutionary Multiobjective Molecule Optimization in an Implicit Chemical Space. J Chem Inf Model 2024;64:5161-5174. [PMID: 38870455 PMCID: PMC11235097 DOI: 10.1021/acs.jcim.4c00031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2024] [Revised: 05/08/2024] [Accepted: 05/13/2024] [Indexed: 06/15/2024]
2
Xian L, Wang Y. Advances in Computational Methods for Protein–Protein Interaction Prediction. ELECTRONICS 2024;13:1059. [DOI: 10.3390/electronics13061059] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
3
Zhang M, Wu Q, Chen H, Heidari AA, Cai Z, Li J, Md Abdelrahim E, Mansour RF. Whale optimization with random contraction and Rosenbrock method for COVID-19 disease prediction. Biomed Signal Process Control 2023;83:104638. [PMID: 36741073 PMCID: PMC9889265 DOI: 10.1016/j.bspc.2023.104638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Revised: 12/01/2022] [Accepted: 01/25/2023] [Indexed: 02/04/2023]
4
Wei PJ, Ma W, Li Y, Su Y. Disease biomarker identification based on sample network optimization. Methods 2023;213:42-49. [PMID: 37001685 DOI: 10.1016/j.ymeth.2023.03.005] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Revised: 03/12/2023] [Accepted: 03/16/2023] [Indexed: 03/31/2023]  Open
5
Chen H, Liu X. Reweighted multi-view clustering with tissue-like P system. PLoS One 2023;18:e0269878. [PMID: 36763648 PMCID: PMC9917278 DOI: 10.1371/journal.pone.0269878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2022] [Accepted: 05/29/2022] [Indexed: 02/12/2023]  Open
6
Li X, Han P, Chen W, Gao C, Wang S, Song T, Niu M, Rodriguez-Patón A. MARPPI: boosting prediction of protein-protein interactions with multi-scale architecture residual network. Brief Bioinform 2023;24:6887309. [PMID: 36502435 DOI: 10.1093/bib/bbac524] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Revised: 09/29/2022] [Accepted: 11/04/2022] [Indexed: 12/14/2022]  Open
7
Shang J, Zhu X, Sun Y, Li F, Kong X, Liu JX. DM-MOGA: a multi-objective optimization genetic algorithm for identifying disease modules of non-small cell lung cancer. BMC Bioinformatics 2023;24:13. [PMID: 36624376 PMCID: PMC9830734 DOI: 10.1186/s12859-023-05136-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Accepted: 01/04/2023] [Indexed: 01/11/2023]  Open
8
Han Y, Chen W, Heidari AA, Chen H. Multi-verse Optimizer with Rosenbrock and Diffusion Mechanisms for Multilevel Threshold Image Segmentation from COVID-19 Chest X-Ray Images. JOURNAL OF BIONIC ENGINEERING 2023;20:1198-1262. [PMID: 36619872 PMCID: PMC9811903 DOI: 10.1007/s42235-022-00295-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Revised: 10/17/2022] [Accepted: 10/19/2022] [Indexed: 06/17/2023]
9
Li J, Liu K, Hu Y, Zhang H, Heidari AA, Chen H, Zhang W, Algarni AD, Elmannai H. Eres-UNet++: Liver CT image segmentation based on high-efficiency channel attention and Res-UNet+. Comput Biol Med 2022;158:106501. [PMID: 36635120 DOI: 10.1016/j.compbiomed.2022.106501] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 11/17/2022] [Accepted: 11/18/2022] [Indexed: 01/11/2023]
10
Han P, Li X, Wang X, Wang S, Gao C, Chen W. Exploring the effects of drug, disease, and protein dependencies on biomedical named entity recognition: A comparative analysis. Front Pharmacol 2022;13:1020759. [PMID: 36618912 PMCID: PMC9812568 DOI: 10.3389/fphar.2022.1020759] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2022] [Accepted: 12/02/2022] [Indexed: 12/24/2022]  Open
11
Li C, Hou L, Pan J, Chen H, Cai X, Liang G. Tuberculous pleural effusion prediction using ant colony optimizer with grade-based search assisted support vector machine. Front Neuroinform 2022;16:1078685. [PMID: 36601381 PMCID: PMC9806141 DOI: 10.3389/fninf.2022.1078685] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2022] [Accepted: 11/28/2022] [Indexed: 12/23/2022]  Open
12
Su H, Han Z, Fu Y, Zhao D, Yu F, Heidari AA, Zhang Y, Shou Y, Wu P, Chen H, Chen Y. Detection of pulmonary embolism severity using clinical characteristics, hematological indices, and machine learning techniques. Front Neuroinform 2022;16:1029690. [PMID: 36590906 PMCID: PMC9800512 DOI: 10.3389/fninf.2022.1029690] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Accepted: 11/24/2022] [Indexed: 12/23/2022]  Open
13
Li Y, Zhao D, Liu G, Liu Y, Bano Y, Ibrohimov A, Chen H, Wu C, Chen X. Intradialytic hypotension prediction using covariance matrix-driven whale optimizer with orthogonal structure-assisted extreme learning machine. Front Neuroinform 2022;16:956423. [PMID: 36387587 PMCID: PMC9659657 DOI: 10.3389/fninf.2022.956423] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Accepted: 09/28/2022] [Indexed: 09/19/2023]  Open
14
Song T, Dai H, Wang S, Wang G, Zhang X, Zhang Y, Jiao L. TransCluster: A Cell-Type Identification Method for single-cell RNA-Seq data using deep learning based on transformer. Front Genet 2022;13:1038919. [PMID: 36303549 PMCID: PMC9592860 DOI: 10.3389/fgene.2022.1038919] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2022] [Accepted: 09/23/2022] [Indexed: 11/25/2022]  Open
15
Qiu F, Zheng P, Heidari AA, Liang G, Chen H, Karim FK, Elmannai H, Lin H. Mutational Slime Mould Algorithm for Gene Selection. Biomedicines 2022;10:2052. [PMID: 36009599 PMCID: PMC9406076 DOI: 10.3390/biomedicines10082052] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2022] [Revised: 08/14/2022] [Accepted: 08/16/2022] [Indexed: 02/02/2023]  Open
16
Wong WK, Zhou J. Using CVX to construct optimal designs for biomedical studies with multiple objectives. J Comput Graph Stat 2022. [DOI: 10.1080/10618600.2022.2104858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
17
Liang J, Li ZW, Yue CT, Hu Z, Cheng H, Liu ZX, Guo WF. Multi-modal optimization to identify personalized biomarkers for disease prediction of individual patients with cancer. Brief Bioinform 2022;23:6647504. [PMID: 35858208 DOI: 10.1093/bib/bbac254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2022] [Revised: 05/16/2022] [Accepted: 05/31/2022] [Indexed: 11/14/2022]  Open
18
Multilevel threshold image segmentation for COVID-19 chest radiography: A framework using horizontal and vertical multiverse optimization. Comput Biol Med 2022;146:105618. [PMID: 35690477 PMCID: PMC9113963 DOI: 10.1016/j.compbiomed.2022.105618] [Citation(s) in RCA: 106] [Impact Index Per Article: 35.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2022] [Revised: 05/07/2022] [Accepted: 05/12/2022] [Indexed: 11/28/2022]
19
Li X, Han P, Wang G, Chen W, Wang S, Song T. SDNN-PPI: self-attention with deep neural network effect on protein-protein interaction prediction. BMC Genomics 2022;23:474. [PMID: 35761175 PMCID: PMC9235110 DOI: 10.1186/s12864-022-08687-2] [Citation(s) in RCA: 30] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2022] [Accepted: 06/10/2022] [Indexed: 12/20/2022]  Open
20
Boosted machine learning model for predicting intradialytic hypotension using serum biomarkers of nutrition. Comput Biol Med 2022;147:105752. [DOI: 10.1016/j.compbiomed.2022.105752] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2022] [Revised: 06/13/2022] [Accepted: 06/14/2022] [Indexed: 11/22/2022]
21
Tool for Predicting College Student Career Decisions: An Enhanced Support Vector Machine Framework. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12094776] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
22
An efficient rotational direction heap-based optimization with orthogonal structure for medical diagnosis. Comput Biol Med 2022;146:105563. [PMID: 35551010 DOI: 10.1016/j.compbiomed.2022.105563] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 04/24/2022] [Accepted: 04/24/2022] [Indexed: 12/17/2022]
23
Yang X, Zhao D, Yu F, Heidari AA, Bano Y, Ibrohimov A, Liu Y, Cai Z, Chen H, Chen X. An optimized machine learning framework for predicting intradialytic hypotension using indexes of chronic kidney disease-mineral and bone disorders. Comput Biol Med 2022;145:105510. [DOI: 10.1016/j.compbiomed.2022.105510] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Revised: 04/07/2022] [Accepted: 04/07/2022] [Indexed: 11/03/2022]
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