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For: Solo V, Poline JB, Lindquist MA, Simpson SL, Bowman FD, Chung MK, Cassidy B. Connectivity in fMRI: Blind Spots and Breakthroughs. IEEE Trans Med Imaging 2018;37:1537-1550. [PMID: 29969406 PMCID: PMC6291757 DOI: 10.1109/tmi.2018.2831261] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Number Cited by Other Article(s)
1
Zhang J, Posse S, Tatsuoka C. Sliding window functional connectivity inference with nonstationary autocorrelations and cross-correlations. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.06.18.599636. [PMID: 38948863 PMCID: PMC11212997 DOI: 10.1101/2024.06.18.599636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/02/2024]
2
Chung MK, Azizi T, Hanson JL, Alexander AL, Pollak SD, Davidson RJ. Altered topological structure of the brain white matter in maltreated children through topological data analysis. Netw Neurosci 2024;8:355-376. [PMID: 38711544 PMCID: PMC11073548 DOI: 10.1162/netn_a_00355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Accepted: 11/30/2023] [Indexed: 05/08/2024]  Open
3
Simpson SL, Shappell HM, Bahrami M. Statistical Brain Network Analysis. ANNUAL REVIEW OF STATISTICS AND ITS APPLICATION 2023;11:505-531. [PMID: 39184922 PMCID: PMC11343573 DOI: 10.1146/annurev-statistics-040522-020722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/27/2024]
4
Chung MK, Azizi T, Hanson JL, Alexander AL, Davidson RJ, Pollak SD. Altered Topological Structure of the Brain White Matter in Maltreated Children through Topological Data Analysis. ARXIV 2023:arXiv:2304.05908v3. [PMID: 37090232 PMCID: PMC10120754] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 04/25/2023]
5
Liang Y, Long M, Yang P, Wang T, Jiao J, Lei B. Fused Brain Functional Connectivity Network and Edge-attention Graph Convolution Network for Fibromyalgia Syndrome Diagnosis. ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY. ANNUAL INTERNATIONAL CONFERENCE 2023;2023:1-5. [PMID: 38083477 DOI: 10.1109/embc40787.2023.10340485] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2023]
6
Wang Y, Guo Y. LOCUS: A REGULARIZED BLIND SOURCE SEPARATION METHOD WITH LOW-RANK STRUCTURE FOR INVESTIGATING BRAIN CONNECTIVITY. Ann Appl Stat 2023;17:1307-1332. [PMID: 39040949 PMCID: PMC11262594 DOI: 10.1214/22-aoas1670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/24/2024]
7
Weaver C, Xiao L, Lindquist MA. Single-index models with functional connectivity network predictors. Biostatistics 2022;24:52-67. [PMID: 33948617 PMCID: PMC9748592 DOI: 10.1093/biostatistics/kxab015] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2020] [Revised: 03/22/2021] [Accepted: 03/25/2021] [Indexed: 12/16/2022]  Open
8
Morris EL, Taylor SF, Kang J. On predictability of individual functional connectivity networks from clinical characteristics. Hum Brain Mapp 2022;43:5250-5265. [PMID: 35811395 PMCID: PMC9812246 DOI: 10.1002/hbm.26000] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2021] [Revised: 05/07/2022] [Accepted: 06/06/2022] [Indexed: 01/15/2023]  Open
9
Li Y, Zhang X, Nie J, Zhang G, Fang R, Xu X, Wu Z, Hu D, Wang L, Zhang H, Lin W, Li G. Brain Connectivity Based Graph Convolutional Networks and Its Application to Infant Age Prediction. IEEE TRANSACTIONS ON MEDICAL IMAGING 2022;41:2764-2776. [PMID: 35500083 PMCID: PMC10041448 DOI: 10.1109/tmi.2022.3171778] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
10
Shahhosseini Y, Miranda MF. Functional Connectivity Methods and Their Applications in fMRI Data. ENTROPY 2022;24:e24030390. [PMID: 35327901 PMCID: PMC8946919 DOI: 10.3390/e24030390] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/15/2022] [Revised: 02/23/2022] [Accepted: 03/08/2022] [Indexed: 02/01/2023]
11
Simpson SL. Mixed Modeling Frameworks for Analyzing Whole-Brain Network Data. Methods Mol Biol 2022;2393:571-595. [PMID: 34837200 PMCID: PMC9251854 DOI: 10.1007/978-1-0716-1803-5_30] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
12
Xin B, Huang J, Zhang L, Zheng C, Zhou Y, Lu J, Wang X. Dynamic topology analysis for spatial patterns of multifocal lesions on MRI. Med Image Anal 2021;76:102267. [PMID: 34929461 DOI: 10.1016/j.media.2021.102267] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2021] [Revised: 07/26/2021] [Accepted: 10/07/2021] [Indexed: 01/01/2023]
13
Liang D, Xia S, Zhang X, Zhang W. Analysis of Brain Functional Connectivity Neural Circuits in Children With Autism Based on Persistent Homology. Front Hum Neurosci 2021;15:745671. [PMID: 34588970 PMCID: PMC8473898 DOI: 10.3389/fnhum.2021.745671] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Accepted: 08/19/2021] [Indexed: 11/24/2022]  Open
14
Caputi L, Pidnebesna A, Hlinka J. Promises and pitfalls of topological data analysis for brain connectivity analysis. Neuroimage 2021;238:118245. [PMID: 34111515 DOI: 10.1016/j.neuroimage.2021.118245] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Revised: 05/30/2021] [Accepted: 06/05/2021] [Indexed: 11/17/2022]  Open
15
Wang YXR, Li L, Li JJ, Huang H. Network Modeling in Biology: Statistical Methods for Gene and Brain Networks. Stat Sci 2021;36:89-108. [PMID: 34305304 PMCID: PMC8296984 DOI: 10.1214/20-sts792] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
16
Li J, Bian C, Luo H, Chen D, Cao L, Liang H. Multi-dimensional persistent feature analysis identifies connectivity patterns of resting-state brain networks in Alzheimer's disease. J Neural Eng 2020;18. [PMID: 33152713 DOI: 10.1088/1741-2552/abc7ef] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 11/05/2020] [Indexed: 01/21/2023]
17
Jin W, Zhu H, Shu P, Tong S, Sun J. Extracting Individual Neural Fingerprint Encoded in Functional Connectivity by Silencing Indirect Effects. IEEE Trans Biomed Eng 2020;67:2253-2265. [DOI: 10.1109/tbme.2019.2958333] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
18
Decoding Task-Specific Cognitive States with Slow, Directed Functional Networks in the Human Brain. eNeuro 2020;7:ENEURO.0512-19.2019. [PMID: 32265196 PMCID: PMC7358332 DOI: 10.1523/eneuro.0512-19.2019] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Accepted: 12/12/2019] [Indexed: 12/02/2022]  Open
19
Ghafouri S, Khasteh SH. A survey on exponential random graph models: an application perspective. PeerJ Comput Sci 2020;6:e269. [PMID: 33816920 PMCID: PMC7924687 DOI: 10.7717/peerj-cs.269] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2019] [Accepted: 03/08/2020] [Indexed: 06/12/2023]
20
Noriega G. Restricted, Repetitive, and Stereotypical Patterns of Behavior in Autism-an fMRI Perspective. IEEE Trans Neural Syst Rehabil Eng 2019;27:1139-1148. [PMID: 31021772 DOI: 10.1109/tnsre.2019.2912416] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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