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Guetarni B, Windal F, Benhabiles H, Petit M, Dubois R, Leteurtre E, Collard D. A Vision Transformer-Based Framework for Knowledge Transfer From Multi-Modal to Mono-Modal Lymphoma Subtyping Models. IEEE J Biomed Health Inform 2024; 28:5562-5572. [PMID: 38819973 DOI: 10.1109/jbhi.2024.3407878] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/02/2024]
Abstract
Determining lymphoma subtypes is a crucial step for better patient treatment targeting to potentially increase their survival chances. In this context, the existing gold standard diagnosis method, which relies on gene expression technology, is highly expensive and time-consuming, making it less accessibility. Although alternative diagnosis methods based on IHC (immunohistochemistry) technologies exist (recommended by the WHO), they still suffer from similar limitations and are less accurate. Whole Slide Image (WSI) analysis using deep learning models has shown promising potential for cancer diagnosis, that could offer cost-effective and faster alternatives to existing methods. In this work, we propose a vision transformer-based framework for distinguishing DLBCL (Diffuse Large B-Cell Lymphoma) cancer subtypes from high-resolution WSIs. To this end, we introduce a multi-modal architecture to train a classifier model from various WSI modalities. We then leverage this model through a knowledge distillation process to efficiently guide the learning of a mono-modal classifier. Our experimental study conducted on a lymphoma dataset of 157 patients shows the promising performance of our mono-modal classification model, outperforming six recent state-of-the-art methods. In addition, the power-law curve, estimated on our experimental data, suggests that with more training data from a reasonable number of additional patients, our model could achieve competitive diagnosis accuracy with IHC technologies. Furthermore, the efficiency of our framework is confirmed through an additional experimental study on an external breast cancer dataset (BCI dataset).
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Zhong W, Zhang H, Gao Z, Hau WK, Yang G, Liu X, Xu L. Distraction-aware hierarchical learning for vascular structure segmentation in intravascular ultrasound images. Comput Med Imaging Graph 2024; 115:102381. [PMID: 38640620 DOI: 10.1016/j.compmedimag.2024.102381] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 02/19/2024] [Accepted: 04/09/2024] [Indexed: 04/21/2024]
Abstract
Vascular structure segmentation in intravascular ultrasound (IVUS) images plays an important role in pre-procedural evaluation of percutaneous coronary intervention (PCI). However, vascular structure segmentation in IVUS images has the challenge of structure-dependent distractions. Structure-dependent distractions are categorized into two cases, structural intrinsic distractions and inter-structural distractions. Traditional machine learning methods often rely solely on low-level features, overlooking high-level features. This way limits the generalization of these methods. The existing semantic segmentation methods integrate low-level and high-level features to enhance generalization performance. But these methods also introduce additional interference, which is harmful to solving structural intrinsic distractions. Distraction cue methods attempt to address structural intrinsic distractions by removing interference from the features through a unique decoder. However, they tend to overlook the problem of inter-structural distractions. In this paper, we propose distraction-aware hierarchical learning (DHL) for vascular structure segmentation in IVUS images. Inspired by distraction cue methods for removing interference in a decoder, the DHL is designed as a hierarchical decoder that gradually removes structure-dependent distractions. The DHL includes global perception process, distraction perception process and structural perception process. The global perception process and distraction perception process remove structural intrinsic distractions then the structural perception process removes inter-structural distractions. In the global perception process, the DHL searches for the coarse structural region of the vascular structures on the slice of IVUS sequence. In the distraction perception process, the DHL progressively refines the coarse structural region of the vascular structures to remove structural distractions. In the structural perception process, the DHL detects regions of inter-structural distractions in fused structure features then separates them. Extensive experiments on 361 subjects show that the DHL is effective (e.g., the average Dice is greater than 0.95), and superior to ten state-of-the-art IVUS vascular structure segmentation methods.
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Affiliation(s)
- Wenhao Zhong
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, 518055, Guangdong, China
| | - Heye Zhang
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, 518055, Guangdong, China
| | - Zhifan Gao
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, 518055, Guangdong, China
| | - William Kongto Hau
- Department of Medicine and Therapeutics, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong, China
| | - Guang Yang
- Bioengineering Department and Imperial-X, Imperial College London, W12 7SL London, UK; Cardiovascular Research Centre, Royal Brompton Hospital, SW3 6NP London, UK; National Heart and Lung Institute, Imperial College London, SW7 2AZ London, UK; School of Biomedical Engineering and Imaging Sciences, King's College London, WC2R 2LS London, UK
| | - Xiujian Liu
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, 518055, Guangdong, China.
| | - Lin Xu
- Department of Geriatric Cardiology, PLA General Hospital of the Southern Theatre Command, Guangzhou, China.
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Liu X, Feng T, Liu W, Song L, Yuan Y, Hau WK, Ser JD, Gao Z. Scale Mutualized Perception for Vessel Border Detection in Intravascular Ultrasound Images. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2024; 21:1060-1071. [PMID: 36441897 DOI: 10.1109/tcbb.2022.3224934] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Vessel border detection in IVUS images is essential for coronary disease diagnosis. It helps to obtain the clinical indices on the inner vessel morphology to indicate the stenosis. However, the existing methods suffer the challenge of scale-dependent interference. Early methods usually rely on the hand-crafted features, thus not robust to this interference. The existing deep learning methods are also ineffective to solve this challenge, because these methods aggregate multi-scale features in the top-down way. This aggregation may bring in interference from the non-adjacent scale. Besides, they only combine the features in all scales, and thus may weaken their complementary information. We propose the scale mutualized perception to solve this challenge by considering the adjacent scales mutually to preserve their complementary information. First, the adjacent small scales contain certain semantics to locate different vessel tissues. Then, they can also perceive the global context to assist the representation of the local context in the adjacent large scale, and vice versa. It helps to distinguish the objects with similar local features. Second, the adjacent large scales provide detailed information to refine the vessel boundaries. The experiments show the effectiveness of our method in 153 IVUS sequences, and its superiority to ten state-of-the-art methods.
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Alrashdi I. Fog-based deep learning framework for real-time pandemic screening in smart cities from multi-site tomographies. BMC Med Imaging 2024; 24:123. [PMID: 38797827 PMCID: PMC11129417 DOI: 10.1186/s12880-024-01302-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2024] [Accepted: 05/20/2024] [Indexed: 05/29/2024] Open
Abstract
The quick proliferation of pandemic diseases has been imposing many concerns on the international health infrastructure. To combat pandemic diseases in smart cities, Artificial Intelligence of Things (AIoT) technology, based on the integration of artificial intelligence (AI) with the Internet of Things (IoT), is commonly used to promote efficient control and diagnosis during the outbreak, thereby minimizing possible losses. However, the presence of multi-source institutional data remains one of the major challenges hindering the practical usage of AIoT solutions for pandemic disease diagnosis. This paper presents a novel framework that utilizes multi-site data fusion to boost the accurateness of pandemic disease diagnosis. In particular, we focus on a case study of COVID-19 lesion segmentation, a crucial task for understanding disease progression and optimizing treatment strategies. In this study, we propose a novel multi-decoder segmentation network for efficient segmentation of infections from cross-domain CT scans in smart cities. The multi-decoder segmentation network leverages data from heterogeneous domains and utilizes strong learning representations to accurately segment infections. Performance evaluation of the multi-decoder segmentation network was conducted on three publicly accessible datasets, demonstrating robust results with an average dice score of 89.9% and an average surface dice of 86.87%. To address scalability and latency issues associated with centralized cloud systems, fog computing (FC) emerges as a viable solution. FC brings resources closer to the operator, offering low latency and energy-efficient data management and processing. In this context, we propose a unique FC technique called PANDFOG to deploy the multi-decoder segmentation network on edge nodes for practical and clinical applications of automated COVID-19 pneumonia analysis. The results of this study highlight the efficacy of the multi-decoder segmentation network in accurately segmenting infections from cross-domain CT scans. Moreover, the proposed PANDFOG system demonstrates the practical deployment of the multi-decoder segmentation network on edge nodes, providing real-time access to COVID-19 segmentation findings for improved patient monitoring and clinical decision-making.
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Affiliation(s)
- Ibrahim Alrashdi
- Department of Computer Science, College of Computer and Information Sciences, Jouf University, 72388, Sakaka, Aljouf, Saudi Arabia.
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Ying M, Wang Y, Yang K, Wang H, Liu X. A deep learning knowledge distillation framework using knee MRI and arthroscopy data for meniscus tear detection. Front Bioeng Biotechnol 2024; 11:1326706. [PMID: 38292305 PMCID: PMC10825958 DOI: 10.3389/fbioe.2023.1326706] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2023] [Accepted: 12/22/2023] [Indexed: 02/01/2024] Open
Abstract
Purpose: To construct a deep learning knowledge distillation framework exploring the utilization of MRI alone or combing with distilled Arthroscopy information for meniscus tear detection. Methods: A database of 199 paired knee Arthroscopy-MRI exams was used to develop a multimodal teacher network and an MRI-based student network, which used residual neural networks architectures. A knowledge distillation framework comprising the multimodal teacher network T and the monomodal student network S was proposed. We optimized the loss functions of mean squared error (MSE) and cross-entropy (CE) to enable the student network S to learn arthroscopic information from the teacher network T through our deep learning knowledge distillation framework, ultimately resulting in a distilled student network S T. A coronal proton density (PD)-weighted fat-suppressed MRI sequence was used in this study. Fivefold cross-validation was employed, and the accuracy, sensitivity, specificity, F1-score, receiver operating characteristic (ROC) curves and area under the receiver operating characteristic curve (AUC) were used to evaluate the medial and lateral meniscal tears detection performance of the models, including the undistilled student model S, the distilled student model S T and the teacher model T. Results: The AUCs of the undistilled student model S, the distilled student model S T, the teacher model T for medial meniscus (MM) tear detection and lateral meniscus (LM) tear detection are 0.773/0.672, 0.792/0.751 and 0.834/0.746, respectively. The distilled student model S T had higher AUCs than the undistilled model S. After undergoing knowledge distillation processing, the distilled student model demonstrated promising results, with accuracy (0.764/0.734), sensitivity (0.838/0.661), and F1-score (0.680/0.754) for both medial and lateral tear detection better than the undistilled one with accuracy (0.734/0.648), sensitivity (0.733/0.607), and F1-score (0.620/0.673). Conclusion: Through the knowledge distillation framework, the student model S based on MRI benefited from the multimodal teacher model T and achieved an improved meniscus tear detection performance.
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Affiliation(s)
- Mengjie Ying
- Department of Orthopedics, Shanghai Sixth People’s Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | - Yufan Wang
- Engineering Research Center for Digital Medicine of the Ministry of Education, Shanghai, China
- School of Biomedical Engineering and Med-X Research Institute, Shanghai Jiao Tong University, Shanghai, China
| | - Kai Yang
- Department of Radiology, Shanghai Sixth People’s Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | - Haoyuan Wang
- Department of Orthopedics, Shanghai Sixth People’s Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
| | - Xudong Liu
- Department of Orthopedics, Shanghai Sixth People’s Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, China
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Huang X, Bajaj R, Li Y, Ye X, Lin J, Pugliese F, Ramasamy A, Gu Y, Wang Y, Torii R, Dijkstra J, Zhou H, Bourantas CV, Zhang Q. POST-IVUS: A perceptual organisation-aware selective transformer framework for intravascular ultrasound segmentation. Med Image Anal 2023; 89:102922. [PMID: 37598605 DOI: 10.1016/j.media.2023.102922] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 07/06/2023] [Accepted: 08/01/2023] [Indexed: 08/22/2023]
Abstract
Intravascular ultrasound (IVUS) is recommended in guiding coronary intervention. The segmentation of coronary lumen and external elastic membrane (EEM) borders in IVUS images is a key step, but the manual process is time-consuming and error-prone, and suffers from inter-observer variability. In this paper, we propose a novel perceptual organisation-aware selective transformer framework that can achieve accurate and robust segmentation of the vessel walls in IVUS images. In this framework, temporal context-based feature encoders extract efficient motion features of vessels. Then, a perceptual organisation-aware selective transformer module is proposed to extract accurate boundary information, supervised by a dedicated boundary loss. The obtained EEM and lumen segmentation results will be fused in a temporal constraining and fusion module, to determine the most likely correct boundaries with robustness to morphology. Our proposed methods are extensively evaluated in non-selected IVUS sequences, including normal, bifurcated, and calcified vessels with shadow artifacts. The results show that the proposed methods outperform the state-of-the-art, with a Jaccard measure of 0.92 for lumen and 0.94 for EEM on the IVUS 2011 open challenge dataset. This work has been integrated into a software QCU-CMS2 to automatically segment IVUS images in a user-friendly environment.
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Affiliation(s)
- Xingru Huang
- School of Electronic Engineering and Computer Science, Queen Mary University of London, London, E3 4BL, UK; School of Communication Engineering, Hangzhou Dianzi University, Xiasha Higher Education Zone, Hangzhou, Zhejiang, China
| | - Retesh Bajaj
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK; Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Yilong Li
- School of Electronic Engineering and Computer Science, Queen Mary University of London, London, E3 4BL, UK
| | - Xin Ye
- Zhejiang Provincial People's Hospital, 270 West Xueyuan Road, Wenzhou, Zhejiang, China
| | - Ji Lin
- School of Electronic Engineering and Computer Science, Queen Mary University of London, London, E3 4BL, UK
| | - Francesca Pugliese
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK; Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Anantharaman Ramasamy
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK; Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Yue Gu
- Zhejiang Institute of Mechanical and Electrical Engineering, Hangzhou, China
| | - Yaqi Wang
- College of Media Engineering, Communication University of Zhejiang, Hangzhou, China
| | - Ryo Torii
- Department of Mechanical Engineering, University College London, London, UK
| | | | - Huiyu Zhou
- School of Informatics, University of Leicester, University Road, Leicester, LE1 7RH, United Kingdom
| | - Christos V Bourantas
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK; Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Qianni Zhang
- School of Electronic Engineering and Computer Science, Queen Mary University of London, London, E3 4BL, UK.
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Luo G, Ma X, Guo J, Zou M, Wang W, Cao Y, Wang K, Li S. Trajectory-Aware Adaptive Imaging Clue Analysis for Guidewire Artifact Removal in Intravascular Optical Coherence Tomography. IEEE J Biomed Health Inform 2023; 27:4293-4304. [PMID: 37347634 DOI: 10.1109/jbhi.2023.3288757] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/24/2023]
Abstract
Guidewire Artifact Removal (GAR) involves restoring missing imaging signals in areas of IntraVascular Optical Coherence Tomography (IVOCT) videos affected by guidewire artifacts. GAR helps overcome imaging defects and minimizes the impact of missing signals on the diagnosis of CardioVascular Diseases (CVDs). To restore the actual vascular and lesion information within the artifact area, we propose a reliable Trajectory-aware Adaptive imaging Clue analysis Network (TAC-Net) that includes two innovative designs: (i) Adaptive clue aggregation, which considers both texture-focused original (ORI) videos and structure-focused relative total variation (RTV) videos, and suppresses texture-structure imbalance with an active weight-adaptation mechanism; (ii) Trajectory-aware Transformer, which uses a novel attention calculation to perceive the attention distribution of artifact trajectories and avoid the interference of irregular and non-uniform artifacts. We provide a detailed formulation for the procedure and evaluation of the GAR task and conduct comprehensive quantitative and qualitative experiments. The experimental results demonstrate that TAC-Net reliably restores the texture and structure of guidewire artifact areas as expected by experienced physicians (e.g., SSIM: 97.23%). We also discuss the value and potential of the GAR task for clinical applications and computer-aided diagnosis of CVDs.
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Zheng S, Shuyan W, Yingsa H, Meichen S. QOCT-Net: A Physics-Informed Neural Network for Intravascular Optical Coherence Tomography Attenuation Imaging. IEEE J Biomed Health Inform 2023; 27:3958-3969. [PMID: 37192030 DOI: 10.1109/jbhi.2023.3276422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Intravascular optical coherence tomography (IVOCT) provides high-resolution, depth-resolved images of coronary arterial microstructure by acquiring backscattered light. Quantitative attenuation imaging is important for accurate characterization of tissue components and identification of vulnerable plaques. In this work, we proposed a deep learning method for IVOCT attenuation imaging based on the multiple scattering model of light transport. A physics-informed deep network named Quantitative OCT Network (QOCT-Net) was designed to recover pixel-level optical attenuation coefficients directly from standard IVOCT B-scan images. The network was trained and tested on simulation and in vivo datasets. Results showed superior attenuation coefficient estimates both visually and based on quantitative image metrics. The structural similarity, energy error depth and peak signal-to-noise ratio are improved by at least 7%, 5% and 12.4%, respectively, compared with the state-of-the-art non-learning methods. This method potentially enables high-precision quantitative imaging for tissue characterization and vulnerable plaque identification.
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Wang Q, Chen K, Dou W, Ma Y. Cross-Attention Based Multi-Resolution Feature Fusion Model for Self-Supervised Cervical OCT Image Classification. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2023; 20:2541-2554. [PMID: 37027657 DOI: 10.1109/tcbb.2023.3246979] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
Cervical cancer seriously endangers the health of the female reproductive system and even risks women's life in severe cases. Optical coherence tomography (OCT) is a non-invasive, real-time, high-resolution imaging technology for cervical tissues. However, since the interpretation of cervical OCT images is a knowledge-intensive, time-consuming task, it is tough to acquire a large number of high-quality labeled images quickly, which is a big challenge for supervised learning. In this study, we introduce the vision Transformer (ViT) architecture, which has recently achieved impressive results in natural image analysis, into the classification task of cervical OCT images. Our work aims to develop a computer-aided diagnosis (CADx) approach based on a self-supervised ViT-based model to classify cervical OCT images effectively. We leverage masked autoencoders (MAE) to perform self-supervised pre-training on cervical OCT images, so the proposed classification model has a better transfer learning ability. In the fine-tuning process, the ViT-based classification model extracts multi-scale features from OCT images of different resolutions and fuses them with the cross-attention module. The ten-fold cross-validation results on an OCT image dataset from a multi-center clinical study of 733 patients in China indicate that our model achieved an AUC value of 0.9963 ± 0.0069 with a 95.89 ± 3.30% sensitivity and 98.23 ± 1.36 % specificity, outperforming some state-of-the-art classification models based on Transformers and convolutional neural networks (CNNs) in the binary classification task of detecting high-risk cervical diseases, including high-grade squamous intraepithelial lesion (HSIL) and cervical cancer. Furthermore, our model with the cross-shaped voting strategy achieved a sensitivity of 92.06% and specificity of 95.56% on an external validation dataset containing 288 three-dimensional (3D) OCT volumes from 118 Chinese patients in a different new hospital. This result met or exceeded the average of four medical experts who have used OCT for over one year. In addition to promising classification performance, our model has a remarkable ability to detect and visualize local lesions using the attention map of the standard ViT model, providing good interpretability for gynecologists to locate and diagnose possible cervical diseases.
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Gao Z, Guo Y, Zhang J, Zeng T, Yang G. Hierarchical Perception Adversarial Learning Framework for Compressed Sensing MRI. IEEE TRANSACTIONS ON MEDICAL IMAGING 2023; 42:1859-1874. [PMID: 37022266 DOI: 10.1109/tmi.2023.3240862] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
The long acquisition time has limited the accessibility of magnetic resonance imaging (MRI) because it leads to patient discomfort and motion artifacts. Although several MRI techniques have been proposed to reduce the acquisition time, compressed sensing in magnetic resonance imaging (CS-MRI) enables fast acquisition without compromising SNR and resolution. However, existing CS-MRI methods suffer from the challenge of aliasing artifacts. This challenge results in the noise-like textures and missing the fine details, thus leading to unsatisfactory reconstruction performance. To tackle this challenge, we propose a hierarchical perception adversarial learning framework (HP-ALF). HP-ALF can perceive the image information in the hierarchical mechanism: image-level perception and patch-level perception. The former can reduce the visual perception difference in the entire image, and thus achieve aliasing artifact removal. The latter can reduce this difference in the regions of the image, and thus recover fine details. Specifically, HP-ALF achieves the hierarchical mechanism by utilizing multilevel perspective discrimination. This discrimination can provide the information from two perspectives (overall and regional) for adversarial learning. It also utilizes a global and local coherent discriminator to provide structure information to the generator during training. In addition, HP-ALF contains a context-aware learning block to effectively exploit the slice information between individual images for better reconstruction performance. The experiments validated on three datasets demonstrate the effectiveness of HP-ALF and its superiority to the comparative methods.
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Guo S, Zhang H, Gao Y, Wang H, Xu L, Gao Z, Guzzo A, Fortino G. Survival prediction of heart failure patients using motion-based analysis method. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 236:107547. [PMID: 37126888 DOI: 10.1016/j.cmpb.2023.107547] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 04/06/2023] [Accepted: 04/09/2023] [Indexed: 05/03/2023]
Abstract
BACKGROUND AND OBJECTIVE Survival prediction of heart failure patients is critical to improve the prognostic management of the cardiovascular disease. The existing survival prediction methods focus on the clinical information while lacking the cardiac motion information. we propose a motion-based analysis method to predict the survival risk of heart failure patients for aiding clinical diagnosis and treatment. METHODS We propose a motion-based analysis method for survival prediction of heart failure patients. First, our method proposes the hierarchical spatial-temporal structure to capture the myocardial border. It promotes the model discrimination on border features. Second, our method explores the dense optical flow structure to capture motion fields. It improves the tracking capability on cardiac images. The cardiac motion information is obtained by fusing boundary information and motion fields of cardiac images. Finally, our method proposes the multi-modality deep-cox structure to predict the survival risk of heart failure patients. It improves the survival probability of heart failure patients. RESULTS The motion-based analysis method is confirmed to be able to improve the survival prediction of heart failure patients. The precision, recall, F1-score, and C-index are 0.8519, 0.8333, 0.8425, and 0.8478, respectively, which is superior to other state-of-the-art methods. CONCLUSIONS The experimental results show that the proposed model can effectively predict survival risk of heart failure patients. It facilitates the application of robust clinical treatment strategies.
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Affiliation(s)
- Saidi Guo
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, China
| | - Heye Zhang
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, China.
| | - Yifeng Gao
- Department of Radiology, Beijing Anzhen Hospital, Capital Medical University, Beijing, China
| | - Hui Wang
- Department of Radiology, Beijing Anzhen Hospital, Capital Medical University, Beijing, China
| | - Lei Xu
- Department of Radiology, Beijing Anzhen Hospital, Capital Medical University, Beijing, China
| | - Zhifan Gao
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, China
| | - Antonella Guzzo
- Department of Informatics, Modeling, Electronics and Systems Engineering (DIMES), University of Calabria, Rende, Italy
| | - Giancarlo Fortino
- Department of Informatics, Modeling, Electronics and Systems Engineering (DIMES), University of Calabria, Rende, Italy
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Yong D, Minjie C, Yujie Z, Jianli W, Ze L, Pengfei L, Xiangling L, Xiujian L, Javier DS. Diagnostic performance of IVUS-FFR analysis based on generative adversarial network and bifurcation fractal law for assessing myocardial ischemia. Front Cardiovasc Med 2023; 10:1155969. [PMID: 37020517 PMCID: PMC10067879 DOI: 10.3389/fcvm.2023.1155969] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 02/20/2023] [Indexed: 03/22/2023] Open
Abstract
BackgroundIVUS-based virtual FFR (IVUS-FFR) can provide additional functional assessment information to IVUS imaging for the diagnosis of coronary stenosis. IVUS image segmentation and side branch blood flow can affect the accuracy of virtual FFR. The purpose of this study was to evaluate the diagnostic performance of an IVUS-FFR analysis based on generative adversarial networks and bifurcation fractal law, using invasive FFR as a reference.MethodIn this study, a total of 108 vessels were retrospectively collected from 87 patients who underwent IVUS and invasive FFR. IVUS-FFR was performed by analysts who were blinded to invasive FFR. We evaluated the diagnostic performance and computation time of IVUS-FFR, and compared it with that of the FFR-branch (considering side branch blood flow by manually extending the side branch from the bifurcation ostia). We also compared the effects of three bifurcation fractal laws on the accuracy of IVUS-FFR.ResultThe diagnostic accuracy, sensitivity, and specificity for IVUS-FFR to identify invasive FFR≤0.80 were 90.7% (95% CI, 83.6–95.5), 89.7% (95% CI, 78.8–96.1), 92.0% (95% CI, 80.8–97.8), respectively. A good correlation and agreement between IVUS-FFR and invasive FFR were observed. And the average computation time of IVUS-FFR was shorter than that of FFR-branch. In addition to this, we also observe that the HK model is the most accurate among the three bifurcation fractal laws.ConclusionOur proposed IVUS-FFR analysis correlates and agrees well with invasive FFR and shows good diagnostic performance. Compared with FFR-branch, IVUS-FFR has the same level of diagnostic performance with significantly lower computation time.
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Affiliation(s)
- Dong Yong
- Department of Cardiology, the 7th People’s Hospital of Zhengzhou, Zhengzhou, China
| | - Chen Minjie
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, China
| | - Zhao Yujie
- Department of Cardiology, the 7th People’s Hospital of Zhengzhou, Zhengzhou, China
| | - Wang Jianli
- Department of Cardiology, the 7th People’s Hospital of Zhengzhou, Zhengzhou, China
| | - Liu Ze
- Department of Cardiology, the 7th People’s Hospital of Zhengzhou, Zhengzhou, China
| | - Li Pengfei
- Department of Cardiology, the 7th People’s Hospital of Zhengzhou, Zhengzhou, China
| | - Lai Xiangling
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, China
| | - Liu Xiujian
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen, China
- Correspondence: Xiujian Liu
| | - Del Ser Javier
- TECNALIA, Basque Research & Technology Alliance (BRTA), Derio, Spain
- University of the Basque Country (UPV/EHU), Bilbao, Spain
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Zhang H, Gao Z, Zhang D, Hau WK, Zhang H. Progressive Perception Learning for Main Coronary Segmentation in X-Ray Angiography. IEEE TRANSACTIONS ON MEDICAL IMAGING 2023; 42:864-879. [PMID: 36327189 DOI: 10.1109/tmi.2022.3219126] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Main coronary segmentation from the X-ray angiography images is important for the computer-aided diagnosis and treatment of coronary disease. However, it confronts the challenge at three different image granularities (the semantic, surrounding, and local levels). The challenge includes the semantic confusion between the main and collateral vessels, low contrast between the foreground vessel and background surroundings, and local ambiguity near the vessel boundaries. The traditional hand-crafted feature-based methods may be insufficient because they may lack the semantic relationship information and may not distinguish the main and collateral vessels. The existing deep learning-based methods seem to have issues due to the deficiency in the long-distance semantic relationship capture, the foreground and background interference adaptability, and the boundary detail information preservation. To solve the main coronary segmentation challenge, we propose the progressive perception learning (PPL) framework to inspect these three different image granularities. Specifically, the PPL contains the context, interference, and boundary perception modules. The context perception is designed to focus on the main coronary vessel based on the semantic dependence capture among different coronary segments. The interference perception is designed to purify the feature maps based on the foreground vessel enhancement and background artifact suppression. The boundary perception is designed to highlight the boundary details based on boundary feature extraction through the intersection between the foreground and background predictions. Extensive experiments on 1085 subjects show that the PPL is effective (e.g., the overall Dice is greater than 95%), and superior to thirteen state-of-the-art coronary segmentation methods.
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14
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Xia M, Yang H, Huang Y, Qu Y, Zhou G, Zhang F, Wang Y, Guo Y. 3D pyramidal densely connected network with cross-frame uncertainty guidance for intravascular ultrasound sequence segmentation. Phys Med Biol 2023; 68. [PMID: 36745930 DOI: 10.1088/1361-6560/acb988] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 02/06/2023] [Indexed: 02/08/2023]
Abstract
Objective. Automatic extraction of external elastic membrane border (EEM) and lumen-intima border (LIB) in intravascular ultrasound (IVUS) sequences aids atherosclerosis diagnosis. Existing IVUS segmentation networks ignored longitudinal relations among sequential images and neglected that IVUS images of different vascular conditions vary largely in intricacy and informativeness. As a result, they suffered from performance degradation in complicated parts in IVUS sequences.Approach. In this paper, we develop a 3D Pyramidal Densely-connected Network (PDN) with Adaptive learning and post-Correction guided by a novel cross-frame uncertainty (CFU). The proposed method is named PDN-AC. Specifically, the PDN enables the longitudinal information exploitation and the effective perception of size-varied vessel regions in IVUS samples, by pyramidally connecting multi-scale 3D dilated convolutions. Additionally, the CFU enhances the robustness of the method to complicated pathology from the frame-level (f-CFU) and pixel-level (p-CFU) via exploiting cross-frame knowledge in IVUS sequences. The f-CFU weighs the complexity of IVUS frames and steers an adaptive sampling during the PDN training. The p-CFU visualizes uncertain pixels probably misclassified by the PDN and guides an active contour-based post-correction.Main results. Human and animal experiments were conducted on IVUS datasets acquired from atherosclerosis patients and pigs. Results showed that the f-CFU weighted adaptive sampling reduced the Hausdorff distance (HD) by 10.53%/7.69% in EEM/LIB detection. Improvements achieved by the p-CFU guided post-correction were 2.94%/5.56%.Significance. The PDN-AC attained mean Jaccard values of 0.90/0.87 and HD values of 0.33/0.34 mm in EEM/LIB detection, preferable to state-of-the-art IVUS segmentation methods.
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Affiliation(s)
- Menghua Xia
- Department of Electronic Engineering, School of Information Science and Technology, Fudan University, Shanghai 200433, People's Republic of China
| | - Hongbo Yang
- Department of Cardiology, Zhongshan Hospital, Fudan University. Shanghai Institute of Cardiovascular Diseases, Shanghai 200032, People's Republic of China
| | - Yi Huang
- Department of Electronic Engineering, School of Information Science and Technology, Fudan University, Shanghai 200433, People's Republic of China
| | - Yanan Qu
- Department of Cardiology, Zhongshan Hospital, Fudan University. Shanghai Institute of Cardiovascular Diseases, Shanghai 200032, People's Republic of China
| | - Guohui Zhou
- Department of Electronic Engineering, School of Information Science and Technology, Fudan University, Shanghai 200433, People's Republic of China.,Key Laboratory of Medical Imaging Computing and Computer Assisted Intervention (MICCAI) of Shanghai, Fudan University, Shanghai 200032, People's Republic of China
| | - Feng Zhang
- Department of Cardiology, Zhongshan Hospital, Fudan University. Shanghai Institute of Cardiovascular Diseases, Shanghai 200032, People's Republic of China
| | - Yuanyuan Wang
- Department of Electronic Engineering, School of Information Science and Technology, Fudan University, Shanghai 200433, People's Republic of China.,Key Laboratory of Medical Imaging Computing and Computer Assisted Intervention (MICCAI) of Shanghai, Fudan University, Shanghai 200032, People's Republic of China
| | - Yi Guo
- Department of Electronic Engineering, School of Information Science and Technology, Fudan University, Shanghai 200433, People's Republic of China.,Key Laboratory of Medical Imaging Computing and Computer Assisted Intervention (MICCAI) of Shanghai, Fudan University, Shanghai 200032, People's Republic of China
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15
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Arora P, Singh P, Girdhar A, Vijayvergiya R. A State-Of-The-Art Review on Coronary Artery Border Segmentation Algorithms for Intravascular Ultrasound (IVUS) Images. Cardiovasc Eng Technol 2023; 14:264-295. [PMID: 36650320 DOI: 10.1007/s13239-023-00654-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 11/28/2022] [Accepted: 01/02/2023] [Indexed: 01/19/2023]
Abstract
Intravascular Ultrasound images (IVUS) is a useful guide for medical practitioners to identify the vascular status of coronary arteries in human beings. IVUS is a unique intracoronary imaging modality that is used as an adjunct to angioplasty to view vessel structures using a catheter with high resolutions. Segmentation of IVUS images has always remained a challenging task due to various impediments, for example, similar tissue components, vessel structures, and artifacts imposed during the acquisition process. Many researchers have applied various techniques to develop standard methods of image interpretation, however, the ultimate goal is still elusive to most researchers. This challenge was presented at the MICCAI- Computing and Visualization for (Intra)Vascular Imaging (CVII) workshop in 2011. This paper presents a major review of recently reported work in the field, with a detailed analysis of various segmentation techniques applied in IVUS, and highlights the directions for future research. The findings recommend a reference database with a larger number of samples acquired at varied transducer frequencies with special consideration towards complex lesions, suitable validation metrics, and ground-truth definition as a standard against which to compare new and current algorithms.
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Affiliation(s)
- Priyanka Arora
- Research Scholar, IKG Punjab Technical University, Punjab, India. .,Department of Computer Science and Engineering, Guru Nanak Dev Engineering College, Ludhiana, Punjab, India.
| | - Parminder Singh
- Department of Computer Science and Engineering, Guru Nanak Dev Engineering College, Ludhiana, Punjab, India
| | - Akshay Girdhar
- Department of Information Technology, Guru Nanak Dev Engineering College, Ludhiana, Punjab, India
| | - Rajesh Vijayvergiya
- Department of Cardiology, Advanced Cardiac Centre, Post Graduate Institute of Medical Education and Research (PGIMER), Chandigarh, India
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16
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Liu Y, Han G, Liu X. Lightweight Compound Scaling Network for Nasopharyngeal Carcinoma Segmentation from MR Images. SENSORS (BASEL, SWITZERLAND) 2022; 22:5875. [PMID: 35957432 PMCID: PMC9371217 DOI: 10.3390/s22155875] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 07/23/2022] [Accepted: 07/30/2022] [Indexed: 06/15/2023]
Abstract
Nasopharyngeal carcinoma (NPC) is a category of tumours with a high incidence in head-and-neck. To treat nasopharyngeal cancer, doctors invariably need to perform focal segmentation. However, manual segmentation is time consuming and laborious for doctors and the existing automatic segmentation methods require large computing resources, which makes some small and medium-sized hospitals unaffordable. To enable small and medium-sized hospitals with limited computational resources to run the model smoothly and improve the accuracy of structure, we propose a new LW-UNet network. The network utilises lightweight modules to form the Compound Scaling Encoder and combines the benefits of UNet to make the model both lightweight and accurate. Our model achieves a high accuracy with a Dice coefficient value of 0.813 with 3.55 M parameters and 7.51 G of FLOPs within 0.1 s (testing time in GPU), which is the best result compared with four other state-of-the-art models.
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Affiliation(s)
- Yi Liu
- School of Biomedical Engineering, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
- Sun Yat-sen University, Guangzhou 510275, China
| | - Guanghui Han
- School of Biomedical Engineering, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
- Sun Yat-sen University, Guangzhou 510275, China
- School of Information Engineering, North China University of Water Resources and Electric Power, Zhengzhou 450046, China
| | - Xiujian Liu
- School of Biomedical Engineering, Shenzhen Campus of Sun Yat-sen University, Shenzhen 518107, China
- Sun Yat-sen University, Guangzhou 510275, China
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17
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The Application of Knowledge Distillation toward Fine-Grained Segmentation for Three-Vessel View of Fetal Heart Ultrasound Images. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2022; 2022:1765550. [PMID: 35875733 PMCID: PMC9303103 DOI: 10.1155/2022/1765550] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/29/2022] [Revised: 05/29/2022] [Accepted: 06/30/2022] [Indexed: 11/17/2022]
Abstract
Objectives. Measuring anatomical parameters in fetal heart ultrasound images is crucial for the diagnosis of congenital heart disease (CHD), which is highly dependent on the clinical experience of the sonographer. To address this challenge, we propose an automated segmentation method using the channel-wise knowledge distillation technique. Methods. We design a teacher-student architecture to conduct channel-wise knowledge distillation. ROI-based cropped images and full-size images are used for the teacher and student models, respectively. It allows the student model to have both the fine-grained segmentation capability inherited from the teacher model and the ability to handle full-size test images. A total of 1,300 fetal heart ultrasound images of three-vessel view were collected and annotated by experienced doctors for training, validation, and testing. Results. We use three evaluation protocols to quantitatively evaluate the segmentation accuracy: Intersection over Union (IoU), Pixel Accuracy (PA), and Dice coefficient (Dice). We achieved better results than related methods on all evaluation metrics. In comparison with DeepLabv3+, the proposed method gets more accurate segmentation boundaries and has performance gains of 1.8% on mean IoU (66.8% to 68.6%), 2.2% on mean PA (79.2% to 81.4%), and 1.2% on mean Dice (80.1% to 81.3%). Conclusions. Our segmentation method could identify the anatomical structure in three-vessel view of fetal heart ultrasound images. Both quantitative and visual analyses show that the proposed method significantly outperforms the related methods in terms of segmentation results.
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18
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Chen Y, Han G, Lin T, Liu X. CAFS: An Attention-Based Co-Segmentation Semi-Supervised Method for Nasopharyngeal Carcinoma Segmentation. SENSORS (BASEL, SWITZERLAND) 2022; 22:5053. [PMID: 35808548 PMCID: PMC9269783 DOI: 10.3390/s22135053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/28/2022] [Revised: 06/25/2022] [Accepted: 06/30/2022] [Indexed: 02/06/2023]
Abstract
Accurate segmentation of nasopharyngeal carcinoma is essential to its treatment effect. However, there are several challenges in existing deep learning-based segmentation methods. First, the acquisition of labeled data are challenging. Second, the nasopharyngeal carcinoma is similar to the surrounding tissues. Third, the shape of nasopharyngeal carcinoma is complex. These challenges make the segmentation of nasopharyngeal carcinoma difficult. This paper proposes a novel semi-supervised method named CAFS for automatic segmentation of nasopharyngeal carcinoma. CAFS addresses the above challenges through three mechanisms: the teacher-student cooperative segmentation mechanism, the attention mechanism, and the feedback mechanism. CAFS can use only a small amount of labeled nasopharyngeal carcinoma data to segment the cancer region accurately. The average DSC value of CAFS is 0.8723 on the nasopharyngeal carcinoma segmentation task. Moreover, CAFS has outperformed the state-of-the-art nasopharyngeal carcinoma segmentation methods in the comparison experiment. Among the compared state-of-the-art methods, CAFS achieved the highest values of DSC, Jaccard, and precision. In particular, the DSC value of CAFS is 7.42% higher than the highest DSC value in the state-of-the-art methods.
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Affiliation(s)
- Yitong Chen
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen 518107, China; (Y.C.); (G.H.); (T.L.)
| | - Guanghui Han
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen 518107, China; (Y.C.); (G.H.); (T.L.)
- School of Information Engineering, North China University of Water Resources and Electric Power, Zhengzhou 450046, China
| | - Tianyu Lin
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen 518107, China; (Y.C.); (G.H.); (T.L.)
| | - Xiujian Liu
- School of Biomedical Engineering, Sun Yat-sen University, Shenzhen 518107, China; (Y.C.); (G.H.); (T.L.)
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19
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Automatic assessment of calcified plaque and nodule by optical coherence tomography adopting deep learning model. Int J Cardiovasc Imaging 2022; 38:2501-2510. [DOI: 10.1007/s10554-022-02637-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/14/2022] [Accepted: 04/27/2022] [Indexed: 11/05/2022]
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20
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Fahrni G, Rotzinger DC, Nakajo C, Dehmeshki J, Qanadli SD. Three-Dimensional Adaptive Image Compression Concept for Medical Imaging: Application to Computed Tomography Angiography for Peripheral Arteries. J Cardiovasc Dev Dis 2022; 9:jcdd9050137. [PMID: 35621848 PMCID: PMC9145618 DOI: 10.3390/jcdd9050137] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2022] [Revised: 04/20/2022] [Accepted: 04/25/2022] [Indexed: 12/02/2022] Open
Abstract
Advances in computed tomography (CT) have resulted in a substantial increase in the size of datasets. We built a new concept of medical image compression that provides the best compromise between compression rate and image quality. The method is based on multiple contexts and regions-of-interest (ROI) defined according to the degree of clinical interest. High priority areas (primary ROIs) are assigned a lossless compression. Other areas (secondary ROIs and background) are compressed with moderate or heavy losses. The method is applied to a whole dataset of CT angiography (CTA) of the lower extremity vasculature. It is compared to standard lossy compression techniques in terms of quantitative and qualitative image quality. It is also compared to standard lossless compression techniques in terms of image size reduction and compression ratio. The proposed compression method met quantitative criteria for high-quality encoding. It obtained the highest qualitative image quality rating score, with a statistically significant difference compared to other methods. The average compressed image size was up to 61% lower compared to standard compression techniques, with a 9:1 compression ratio compared with original non-compressed images. Our new adaptive 3D compression method for CT images can save data storage space while preserving clinically relevant information.
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Affiliation(s)
- Guillaume Fahrni
- Cardiothoracic and Vascular Division, Department of Diagnostic and Interventional Radiology, Lausanne University Hospital and University of Lausanne, 1011 Lausanne, Switzerland; (D.C.R.); (C.N.); (S.D.Q.)
- Correspondence:
| | - David C. Rotzinger
- Cardiothoracic and Vascular Division, Department of Diagnostic and Interventional Radiology, Lausanne University Hospital and University of Lausanne, 1011 Lausanne, Switzerland; (D.C.R.); (C.N.); (S.D.Q.)
- Imaging and Image-Guided Therapies Lab (IGT-L), University of Lausanne, 1015 Lausanne, Switzerland
| | - Chiaki Nakajo
- Cardiothoracic and Vascular Division, Department of Diagnostic and Interventional Radiology, Lausanne University Hospital and University of Lausanne, 1011 Lausanne, Switzerland; (D.C.R.); (C.N.); (S.D.Q.)
| | - Jamshid Dehmeshki
- Department of Computer Science, Kingston University, Kingston-upon-Thames KT1 2QT, UK;
| | - Salah Dine Qanadli
- Cardiothoracic and Vascular Division, Department of Diagnostic and Interventional Radiology, Lausanne University Hospital and University of Lausanne, 1011 Lausanne, Switzerland; (D.C.R.); (C.N.); (S.D.Q.)
- Imaging and Image-Guided Therapies Lab (IGT-L), University of Lausanne, 1015 Lausanne, Switzerland
- Department of Computer Science, Kingston University, Kingston-upon-Thames KT1 2QT, UK;
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21
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Zhao S, Chen B, Chang H, Chen B, Li S. Reasoning discriminative dictionary-embedded network for fully automatic vertebrae tumor diagnosis. Med Image Anal 2022; 79:102456. [DOI: 10.1016/j.media.2022.102456] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2021] [Revised: 04/01/2022] [Accepted: 04/08/2022] [Indexed: 11/24/2022]
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22
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Chen C, Dou Q, Jin Y, Liu Q, Heng PA. Learning With Privileged Multimodal Knowledge for Unimodal Segmentation. IEEE TRANSACTIONS ON MEDICAL IMAGING 2022; 41:621-632. [PMID: 34633927 DOI: 10.1109/tmi.2021.3119385] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Multimodal learning usually requires a complete set of modalities during inference to maintain performance. Although training data can be well-prepared with high-quality multiple modalities, in many cases of clinical practice, only one modality can be acquired and important clinical evaluations have to be made based on the limited single modality information. In this work, we propose a privileged knowledge learning framework with the 'Teacher-Student' architecture, in which the complete multimodal knowledge that is only available in the training data (called privileged information) is transferred from a multimodal teacher network to a unimodal student network, via both a pixel-level and an image-level distillation scheme. Specifically, for the pixel-level distillation, we introduce a regularized knowledge distillation loss which encourages the student to mimic the teacher's softened outputs in a pixel-wise manner and incorporates a regularization factor to reduce the effect of incorrect predictions from the teacher. For the image-level distillation, we propose a contrastive knowledge distillation loss which encodes image-level structured information to enrich the knowledge encoding in combination with the pixel-level distillation. We extensively evaluate our method on two different multi-class segmentation tasks, i.e., cardiac substructure segmentation and brain tumor segmentation. Experimental results on both tasks demonstrate that our privileged knowledge learning is effective in improving unimodal segmentation and outperforms previous methods.
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23
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Blanco PJ, Ziemer PGP, Bulant CA, Ueki Y, Bass R, Räber L, Lemos PA, García-García HM. Fully automated lumen and vessel contour segmentation in intravascular ultrasound datasets. Med Image Anal 2021; 75:102262. [PMID: 34670148 DOI: 10.1016/j.media.2021.102262] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Revised: 10/04/2021] [Accepted: 10/05/2021] [Indexed: 10/20/2022]
Abstract
Segmentation of lumen and vessel contours in intravascular ultrasound (IVUS) pullbacks is an arduous and time-consuming task, which demands adequately trained human resources. In the present study, we propose a machine learning approach to automatically extract lumen and vessel boundaries from IVUS datasets. The proposed approach relies on the concatenation of a deep neural network to deliver a preliminary segmentation, followed by a Gaussian process (GP) regressor to construct the final lumen and vessel contours. A multi-frame convolutional neural network (MFCNN) exploits adjacency information present in longitudinally neighboring IVUS frames, while the GP regression method filters high-dimensional noise, delivering a consistent representation of the contours. Overall, 160 IVUS pullbacks (63 patients) from the IBIS-4 study (Integrated Biomarkers and Imaging Study-4, Trial NCT00962416), were used in the present work. The MFCNN algorithm was trained with 100 IVUS pullbacks (8427 manually segmented frames), was validated with 30 IVUS pullbacks (2583 manually segmented frames) and was blindly tested with 30 IVUS pullbacks (2425 manually segmented frames). Image and contour metrics were used to characterize model performance by comparing ground truth (GT) and machine learning (ML) contours. Median values (interquartile range, IQR) of the Jaccard index for lumen and vessel were 0.913, [0.882,0.935] and 0.940, [0.917,0.957], respectively. Median values (IQR) of the Hausdorff distance for lumen and vessel were 0.196mm, [0.146,0.275]mm and 0.163mm, [0.122,0.234]mm, respectively. Also, the mean value of lumen area predictions, and limits of agreement were -0.19mm2, [1.1,-1.5]mm2, while the mean value and limits of agreement of plaque burden were 0.0022, [0.082,-0.078]. The results obtained with the model developed in this work allow us to conclude that the proposed machine learning approach delivers accurate segmentations in terms of image metrics, contour metrics and clinically relevant variables, enabling its use in clinical routine by mitigating the costs involved in the manual management of IVUS datasets.
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Affiliation(s)
- Pablo J Blanco
- National Laboratory for Scientific Computing, LNCC/MCTI, Petrópolis, Brazil; National Institute of Science and Technology in Medicine Assisted by Scientific Computing, INCT-MACC, Petrópolis, RJ, Brazil.
| | - Paulo G P Ziemer
- National Laboratory for Scientific Computing, LNCC/MCTI, Petrópolis, Brazil; National Institute of Science and Technology in Medicine Assisted by Scientific Computing, INCT-MACC, Petrópolis, RJ, Brazil
| | - Carlos A Bulant
- Consejo Nacional de Investigaciones Científicas, CONICET, Argentina; Universidad Nacional del Centro, UNICEN, Tandil, Argentina; National Institute of Science and Technology in Medicine Assisted by Scientific Computing, INCT-MACC, Petrópolis, RJ, Brazil
| | - Yasushi Ueki
- Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland
| | - Ronald Bass
- Interventional Cardiology Department, MedStar Washington Hospital Center, Washington, DC, USA; Georgetown University School of Medicine, Washington, DC, USA
| | - Lorenz Räber
- Inselspital, Bern University Hospital, University of Bern, Bern, Switzerland
| | - Pedro A Lemos
- Hospital Israelita Albert Einstein, São Paulo, Brazil; National Institute of Science and Technology in Medicine Assisted by Scientific Computing, INCT-MACC, Petrópolis, RJ, Brazil
| | - Héctor M García-García
- Interventional Cardiology Department, MedStar Washington Hospital Center, Washington, DC, USA; Georgetown University School of Medicine, Washington, DC, USA.
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24
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Rodrigues EO, Rodrigues LO, Lima JJ, Casanova D, Favarim F, Dosciatti ER, Pegorini V, Oliveira LSN, Morais FFC. X-Ray cardiac angiographic vessel segmentation based on pixel classification using machine learning and region growing. Biomed Phys Eng Express 2021; 7. [PMID: 34256366 DOI: 10.1088/2057-1976/ac13ba] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2021] [Accepted: 07/13/2021] [Indexed: 11/11/2022]
Abstract
This work proposes a pixel-classification approach for vessel segmentation in x-ray angiograms. The proposal uses textural features such as anisotropic diffusion, features based on the Hessian matrix, mathematical morphology and statistics. These features are extracted from the neighborhood of each pixel. The approach also uses the ELEMENT methodology, which consists of creating a pixel-classification controlled by region-growing where the result of the classification affects further classifications of pixels. The Random Forests classifier is used to predict whether the pixel belongs to the vessel structure. The approach achieved the best accuracy in the literature (95.48%) outperforming unsupervised state-of-the-art approaches.
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Affiliation(s)
- E O Rodrigues
- Department of Academic Informatics (DAINF), Universidade Tecnologica Federal do Parana (UTFPR), Pato Branco, Parana, Brazil
| | - L O Rodrigues
- Graduate Program of Applied Sciences to Health Products, Universidade Federal Fluminense (UFF), Niteroi, Rio de Janeiro, Brazil
| | - J J Lima
- Department of Academic Informatics (DAINF), Universidade Tecnologica Federal do Parana (UTFPR), Pato Branco, Parana, Brazil
| | - D Casanova
- Department of Academic Informatics (DAINF), Universidade Tecnologica Federal do Parana (UTFPR), Pato Branco, Parana, Brazil
| | - F Favarim
- Department of Academic Informatics (DAINF), Universidade Tecnologica Federal do Parana (UTFPR), Pato Branco, Parana, Brazil
| | - E R Dosciatti
- Department of Academic Informatics (DAINF), Universidade Tecnologica Federal do Parana (UTFPR), Pato Branco, Parana, Brazil
| | - V Pegorini
- Department of Academic Informatics (DAINF), Universidade Tecnologica Federal do Parana (UTFPR), Pato Branco, Parana, Brazil
| | - L S N Oliveira
- Primary Health Care, Pato Branco Prefecture, Parana, Brazil
| | - F F C Morais
- Innovation Office, Mass General Brigham Hospital, Cambridge, Massachusetts, United States of America
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25
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Bargsten L, Raschka S, Schlaefer A. Capsule networks for segmentation of small intravascular ultrasound image datasets. Int J Comput Assist Radiol Surg 2021; 16:1243-1254. [PMID: 34125391 PMCID: PMC8295165 DOI: 10.1007/s11548-021-02417-x] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Accepted: 05/21/2021] [Indexed: 11/28/2022]
Abstract
PURPOSE Intravascular ultrasound (IVUS) imaging is crucial for planning and performing percutaneous coronary interventions. Automatic segmentation of lumen and vessel wall in IVUS images can thus help streamlining the clinical workflow. State-of-the-art results in image segmentation are achieved with data-driven methods like convolutional neural networks (CNNs). These need large amounts of training data to perform sufficiently well but medical image datasets are often rather small. A possibility to overcome this problem is exploiting alternative network architectures like capsule networks. METHODS We systematically investigated different capsule network architecture variants and optimized the performance on IVUS image segmentation. We then compared our capsule network with corresponding CNNs under varying amounts of training images and network parameters. RESULTS Contrary to previous works, our capsule network performs best when doubling the number of capsule types after each downsampling stage, analogous to typical increase rates of feature maps in CNNs. Maximum improvements compared to the baseline CNNs are 20.6% in terms of the Dice coefficient and 87.2% in terms of the average Hausdorff distance. CONCLUSION Capsule networks are promising candidates when it comes to segmentation of small IVUS image datasets. We therefore assume that this also holds for ultrasound images in general. A reasonable next step would be the investigation of capsule networks for few- or even single-shot learning tasks.
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Affiliation(s)
- Lennart Bargsten
- Hamburg University of Technology, Institute of Medical Technology and Intelligent Systems, Hamburg, Germany.
| | - Silas Raschka
- Hamburg University of Technology, Institute of Medical Technology and Intelligent Systems, Hamburg, Germany
| | - Alexander Schlaefer
- Hamburg University of Technology, Institute of Medical Technology and Intelligent Systems, Hamburg, Germany
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26
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Guo S, Xu L, Feng C, Xiong H, Gao Z, Zhang H. Multi-level semantic adaptation for few-shot segmentation on cardiac image sequences. Med Image Anal 2021; 73:102170. [PMID: 34380105 DOI: 10.1016/j.media.2021.102170] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2021] [Revised: 06/04/2021] [Accepted: 07/12/2021] [Indexed: 01/01/2023]
Abstract
Obtaining manual labels is time-consuming and labor-intensive on cardiac image sequences. Few-shot segmentation can utilize limited labels to learn new tasks. However, it suffers from two challenges: spatial-temporal distribution bias and long-term information bias. These challenges derive from the impact of the time dimension on cardiac image sequences, resulting in serious over-adaptation. In this paper, we propose the multi-level semantic adaptation (MSA) for few-shot segmentation on cardiac image sequences. The MSA addresses the two biases by exploring the domain adaptation and the weight adaptation on the semantic features in multiple levels, including sequence-level, frame-level, and pixel-level. First, the MSA proposes the dual-level feature adjustment for domain adaptation in spatial and temporal directions. This adjustment explicitly aligns the frame-level feature and the sequence-level feature to improve the model adaptation on diverse modalities. Second, the MSA explores the hierarchical attention metric for weight adaptation in the frame-level feature and the pixel-level feature. This metric focuses on the similar frame and the target region to promote the model discrimination on the border features. The extensive experiments demonstrate that our MSA is effective in few-shot segmentation on cardiac image sequences with three modalities, i.e. MR, CT, and Echo (e.g. the average Dice is 0.9243), as well as superior to the ten state-of-the-art methods.
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Affiliation(s)
- Saidi Guo
- School of Biomedical Engineering, Sun Yat-sen University, China
| | - Lin Xu
- General Hospital of the Southern Theatre Command, PLA, Guangdong, China; The First School of Clinical Medicine, Southern Medical University, Guangdong, China
| | - Cheng Feng
- Department of Ultrasound, The Third People's Hospital of Shenzhen, Guangdong, China
| | - Huahua Xiong
- Department of Ultrasound, The First Affiliated Hospital of Shenzhen University, Shenzhen Second People's Hospital, Guangdong, China
| | - Zhifan Gao
- School of Biomedical Engineering, Sun Yat-sen University, China.
| | - Heye Zhang
- School of Biomedical Engineering, Sun Yat-sen University, China.
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Lin W, Que L, Lin G, Chen R, Lu Q, Zhicheng Du MD, Hui Liu MD, Yu Z, Huang M. Using Machine Learning to Predict Five-Year Reintervention Risk in Type B Aortic Dissection Patients After Thoracic Endovascular Aortic Repair. JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS 2021. [DOI: 10.1166/jmihi.2021.3813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Purpose: Type B aortic dissection (TBAD) is a high-risk disease, commonly treated with thoracic endovascular aortic repair (TEVAR). However, for the long-term follow-up, it is associated with a high 5-year reintervention rate for patients after TEVAR. There is no accurate definition
of prognostic risk factors for TBAD in medical guidelines, and there is no scientific judgment standard for patients’ quality of life or survival outcome in the next five years in clinical practice. A large amount of medical data features makes prognostic analysis difficult. However,
machine learning (ML) permits lots of objective data features to be considered for clinical risk stratification and patient management. We aimed to predict the 5-year prognosis in TBAD after TEVAR by Ml, based on baseline, stent characteristics and computed tomography angiography (CTA) imaging
data, and provided a certain degree of scientific basis for prognostic risk score and stratification in medical guidelines. Materials and Methods: Dataset we recorded was obtained from 172 TBAD patients undergoing TEVAR. Totally 40 features were recorded, including 14 baseline, 5 stent
characteristics and 21 CTA imaging data. Information gain (IG) was used to select features highly associated with adverse outcome. Then, the Gradient Boost classifier was trained using grid search and stratified 5-fold cross-validation, and Its predictive performance was evaluated by the area
under the curve (AUC) in the receiver operating characteristic (ROC). Results: Totally 60 patients underwent reintervention during follow-up. Combing 24 features selected by IG, ML model predicted prognosis well in TBAD after TEVAR, with an AUC of 0.816 and a 95% confidence interval
of 0.797 to 0.837. Reintervention rate of prediction was slightly higher than the actual (48.2% vs. 34.8%). Conclusion: Machine learning, which combined with baseline, stent characteristics and CTA imaging data for personalized risk computations, effectively predicted reintervention
risk in TBAD patients after TEVAR in 5-year follow-up. The model could be used to efficiently assist the clinical management of TBAD patients and prompt high-risk factors.
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Affiliation(s)
- Weiyuan Lin
- College of Automation Science and Technology, South China University of Technology, Guangzhou, 510640, China
| | - Lifeng Que
- Medical Imaging Center, Shenzhen Hospital, Southern Medical University, Shenzhen, Guangdong, 518110, China
| | - Guisen Lin
- Department of Radiology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510080, China
| | - Rui Chen
- Department of Radiology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510080, China
| | - Qiyang Lu
- College of Automation Science and Technology, South China University of Technology, Guangzhou, 510640, China
| | - M. D. Zhicheng Du
- Department of Medical Statistics and Epidemiology, Health Information Research Center, Guangdong Key Laboratory of Medicine, School of Public Health, Sun Yat-sen University, Guangzhou, 510080, China
| | - M. D. Hui Liu
- Department of Radiology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510080, China
| | - Zhuliang Yu
- College of Automation Science and Technology, South China University of Technology, Guangzhou, 510640, China
| | - Meiping Huang
- Department of Radiology, Guangdong Provincial People’s Hospital, Guangdong Academy of Medical Sciences, Guangzhou, 510080, China
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Dong J, Ai D, Fan J, Deng Q, Song H, Cheng Z, Liang P, Wang Y, Yang J. Local-global active contour model based on tensor-based representation for 3D ultrasound vessel segmentation. Phys Med Biol 2021; 66. [PMID: 33910173 DOI: 10.1088/1361-6560/abfc92] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Accepted: 04/28/2021] [Indexed: 11/11/2022]
Abstract
Three-dimensional (3D) vessel segmentation can provide full spatial information about an anatomic structure to help physicians gain increased understanding of vascular structures, which plays an utmost role in many medical image-processing and analysis applications. The purpose of this paper aims to develop a 3D vessel-segmentation method that can improve segmentation accuracy in 3D ultrasound (US) images. We propose a 3D tensor-based active contour model method for accurate 3D vessel segmentation. With our method, the contrast-independent multiscale bottom-hat tensor representation and local-global information are captured. This strategy ensures the effective extraction of the boundaries of vessels from inhomogeneous and homogeneous regions without being affected by the noise and low-contrast of the 3D US images. Experimental results in clinical 3D US and public 3D Multiphoton Microscopy datasets are used for quantitative and qualitative comparison with several state-of-the-art vessel segmentation methods. Clinical experiments demonstrate that our method can achieve a smoother and more accurate boundary of the vessel object than competing methods. The mean SE, SP and ACC of the proposed method are: 0.7768 ± 0.0597, 0.9978 ± 0.0013 and 0.9971 ± 0.0015 respectively. Experiments on the public dataset show that our method can segment complex vessels in different medical images with noise and low- contrast.
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Affiliation(s)
- Jiahui Dong
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing 100081, People's Republic of China
| | - Danni Ai
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing 100081, People's Republic of China
| | - Jingfan Fan
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing 100081, People's Republic of China
| | - Qiaoling Deng
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing 100081, People's Republic of China
| | - Hong Song
- School of Computer Science and Technology, Beijing Institute of Technology, Beijing 100081, People's Republic of China
| | - Zhigang Cheng
- Department of Interventional Ultrasound, Chinese PLA General Hospital, Beijing 100853, People's Republic of China
| | - Ping Liang
- Department of Interventional Ultrasound, Chinese PLA General Hospital, Beijing 100853, People's Republic of China
| | - Yongtian Wang
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing 100081, People's Republic of China
| | - Jian Yang
- Laboratory of Beijing Engineering Research Center of Mixed Reality and Advanced Display, School of Optics and Photonics, Beijing Institute of Technology, Beijing 100081, People's Republic of China
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Choi SY, Park S, Kim M, Park J, Choi YR, Jin KN. Evaluation of a deep learning-based computer-aided detection algorithm on chest radiographs: Case-control study. Medicine (Baltimore) 2021; 100:e25663. [PMID: 33879750 PMCID: PMC8078463 DOI: 10.1097/md.0000000000025663] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 08/26/2020] [Accepted: 04/05/2021] [Indexed: 01/04/2023] Open
Abstract
Along with recent developments in deep learning techniques, computer-aided diagnosis (CAD) has been growing rapidly in the medical imaging field. In this work, we evaluate the deep learning-based CAD algorithm (DCAD) for detecting and localizing 3 major thoracic abnormalities visible on chest radiographs (CR) and to compare the performance of physicians with and without the assistance of the algorithm. A subset of 244 subjects (60% abnormal CRs) was evaluated. Abnormal findings included mass/nodules (55%), consolidation (21%), and pneumothorax (24%). Observer performance tests were conducted to assess whether the performance of physicians could be enhanced with the algorithm. The area under the receiver operating characteristic (ROC) curve (AUC) and the area under the jackknife alternative free-response ROC (JAFROC) were measured to evaluate the performance of the algorithm and physicians in image classification and lesion detection, respectively. The AUCs for nodule/mass, consolidation, and pneumothorax were 0.9883, 1.000, and 0.9997, respectively. For the image classification, the overall AUC of the pooled physicians was 0.8679 without DCAD and 0.9112 with DCAD. Regarding lesion detection, the pooled observers exhibited a weighted JAFROC figure of merit (FOM) of 0.8426 without DCAD and 0.9112 with DCAD. DCAD for CRs could enhance physicians' performance in the detection of 3 major thoracic abnormalities.
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Affiliation(s)
| | | | | | | | - Ye Ra Choi
- Department of Radiology, Seoul Metropolitan Government, Seoul National University, Boramae Medical Center, Seoul, Korea
| | - Kwang Nam Jin
- College of Medicine, Seoul National University
- Department of Radiology, Seoul Metropolitan Government, Seoul National University, Boramae Medical Center, Seoul, Korea
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30
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KUMAR NNAGARAJA, PRASAD TJAYACHANDRA, PRASAD KSATYA. OPTIMIZED DUAL-TREE COMPLEX WAVELET TRANSFORM AND FUZZY ENTROPY FOR MULTI-MODAL MEDICAL IMAGE FUSION: A HYBRID META-HEURISTIC CONCEPT. J MECH MED BIOL 2021. [DOI: 10.1142/s021951942150024x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
In recent times, multi-modal medical image fusion has emerged as an important medical application tool. An important goal is to fuse the multi-modal medical images from diverse imaging modalities into a single fused image. The physicians broadly utilize this for precise identification and treatment of diseases. This medical image fusion approach will help the physician perform the combined diagnosis, interventional treatment, pre-operative planning, and intra-operative guidance in various medical applications by developing the corresponding information from clinical images through different modalities. In this paper, a novel multi-modal medical image fusion method is adopted using the intelligent method. Initially, the images from two different modalities are applied with optimized Dual-Tree Complex Wavelet Transform (DT-CWT) for splitting the images into high-frequency subbands and low-frequency subbands. As an improvement to the conventional DT-CWT, the filter coefficients are optimized by the hybrid meta-heuristic algorithm named as Hybrid Beetle and Salp Swarm Optimization (HBSSO) by merging the Salp Swarm Algorithm (SSA), and Beetle Swarm Optimization (BSO). Moreover, the fusion of the source images’ high-frequency subbands was done by the optimized type-2 Fuzzy Entropy. The upper and lower membership limits are optimized by the same hybrid HBSSO. The optimized type-2 fuzzy Entropy automatically selects high-frequency coefficients. Also, the fusion of the low-frequency sub-images is performed by the Averaging approach. Further, the inverse optimized DT-CWT on the fused image sets helps to obtain the final fused medical image. The main objective of the optimized DT-CWT and optimized type-2 fuzzy Entropy is to maximize the SSIM. The experimental results confirm that the developed approach outperforms the existing fusion algorithms in diverse performance measures.
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Affiliation(s)
| | | | - K. SATYA PRASAD
- Rector of Vignan’s Foundation for Science Technology and Research, Guntur, Andhra Pradesh, India
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31
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Ruby L, Sanabria SJ, Martini K, Frauenfelder T, Jukema GN, Goksel O, Rominger MB. Quantification of immobilization-induced changes in human calf muscle using speed-of-sound ultrasound: An observational pilot study. Medicine (Baltimore) 2021; 100:e23576. [PMID: 33725923 PMCID: PMC7982197 DOI: 10.1097/md.0000000000023576] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/19/2020] [Accepted: 11/05/2020] [Indexed: 11/25/2022] Open
Abstract
Short-term immobilization leads to fatty muscular degeneration, which is associated with various negative health effects. Based on literature showing very high correlations between MRI Dixon fat fraction and Speed-of-Sound (SoS), we hypothesized that we can detect short-term-immobilization-induced differences in SoS.Both calves of 10 patients with a calf cast on one side for a mean duration of 41 ± 26 days were examined in relaxed position using a standard ultrasound machine. Calf perimeters were measured for both sides. A flat Plexiglas-reflector, placed vertically on the opposite side of the probe with the calf in-between, was used as a timing reference for SoS. SoS was both manually annotated by two readers and assessed by an automatic annotation algorithm. The thickness values of the subcutaneous fat and muscle layers were manually read from the B-mode images. Differences between the cast and non-cast calves were calculated with a paired t test. Correlation analysis of SoS and calf perimeter was performed using Pearson's correlation coefficient.Paired t test showed significant differences between the cast and non-cast side for both SoS (P < .01) and leg perimeter (P < .001). SoS was reduced with the number of days after cast installment (r = -0.553, P = .097). No significant differences were found for muscle layer thickness, subcutaneous fat layer thickness, mean fat echo intensity, or mean muscle echo intensity.Short-term-immobilization led to a significant reduction in SoS in the cast calf compared to the healthy calf, indicating a potential role of SoS as a biomarker in detecting immobilization-induced fatty muscular degeneration not visible on B-mode ultrasound.
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Affiliation(s)
- Lisa Ruby
- Zurich Ultrasound Research and Translation (ZURT), Institute of Diagnostic and Interventional Radiology, University Hospital Zurich, Zürich, Switzerland
| | - Sergio J. Sanabria
- Zurich Ultrasound Research and Translation (ZURT), Institute of Diagnostic and Interventional Radiology, University Hospital Zurich, Zürich, Switzerland
- Deusto Institute of Technology, University of Deusto / IKERBASQUE, Basque Foundation for Science, Bilbao, Spain
| | - Katharina Martini
- Zurich Ultrasound Research and Translation (ZURT), Institute of Diagnostic and Interventional Radiology, University Hospital Zurich, Zürich, Switzerland
| | - Thomas Frauenfelder
- Zurich Ultrasound Research and Translation (ZURT), Institute of Diagnostic and Interventional Radiology, University Hospital Zurich, Zürich, Switzerland
| | - Gerrolt Nico Jukema
- Deusto Institute of Technology, University of Deusto / IKERBASQUE, Basque Foundation for Science, Bilbao, Spain
- Department of Trauma, University Hospital Zurich
| | - Orcun Goksel
- Computer-assisted Applications in Medicine (CAiM), ETH Zurich, Zürich, Switzerland
| | - Marga B. Rominger
- Zurich Ultrasound Research and Translation (ZURT), Institute of Diagnostic and Interventional Radiology, University Hospital Zurich, Zürich, Switzerland
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Inal T, Kaan Atac G, Telatar Z. Effect of Noise Adaptive Wavelet Filter on Diagnostic Performance in Stroke Perfusion. JOURNAL OF MEDICAL IMAGING AND HEALTH INFORMATICS 2021. [DOI: 10.1166/jmihi.2021.3341] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
Background: Computed tomography perfusion (CTP) images include more noise than routine clinic computed tomography (CT) images. Singular value decomposition based deconvolution algorithms are widely used for obtaining several functional perfusion maps. Recently block circulant
singular value decomposition algorithms become popular for its superior property of immunity to contrast bolus lag. It is well known from literature that these algorithms are very sensitive to noise. There are a lot of examples of noise reduction filters in the literature as well as commercial
ones. Functional maps which help physicians in the diagnostic process can be obtained with better image quality by de-noising CTP images with adaptive noise reduction filters. Objective: In this study, the effect of a noise adaptive wavelet filtering method on diagnostic performance
on CTP stroke patient images is investigated. Method: Images of acute stroke patients were de-noised by this method and their diagnostic value were evaluated by visual means, peak signal-to-noise ratio and time intensity profile metrics. An observer evaluation study was carried out
in order to validate quantitative image quality metrics. The results are compared with Gaussian and a bilateral filter based filtering method called TIPS (Time Intensity Profile Similarity) on same images sets to benchmark proposed method. Results: The diagnostic value of the images
obtained from noise adaptive wavelet filtering method were better than Gaussian filter method and were compatible with a wellknown time intensity profile similarity bilateral filter method. Diagnostic performance of the both observers were improved compared to both Gaussian and TIPS methods.
Conclusion: The noise adaptive wavelet filter method succeeded to reduce noise while preserving details contained in the contrast bolus. Its final effect on the timeintensity profiles and generated perfusion maps are compatible with the literature and showed improvements on diagnostic
performance on specificity and overall accuracy when compared to other methods.
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Affiliation(s)
- Tolga Inal
- Department of Electrical-Electronics Engineering, Ankara University, Ankara, 06830, Turkey
| | - Gokce Kaan Atac
- School of Medicine, Department of Radiology, Ufuk University, Ankara, 06520, Turkey
| | - Ziya Telatar
- Department of Electrical-Electronics Engineering, Ankara University, Ankara, 06830, Turkey
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Bajaj R, Huang X, Kilic Y, Jain A, Ramasamy A, Torii R, Moon J, Koh T, Crake T, Parker MK, Tufaro V, Serruys PW, Pugliese F, Mathur A, Baumbach A, Dijkstra J, Zhang Q, Bourantas CV. A deep learning methodology for the automated detection of end-diastolic frames in intravascular ultrasound images. Int J Cardiovasc Imaging 2021; 37:1825-1837. [PMID: 33590430 PMCID: PMC8255253 DOI: 10.1007/s10554-021-02162-x] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/06/2020] [Accepted: 01/07/2021] [Indexed: 12/13/2022]
Abstract
Coronary luminal dimensions change during the cardiac cycle. However, contemporary volumetric intravascular ultrasound (IVUS) analysis is performed in non-gated images as existing methods to acquire gated or to retrospectively gate IVUS images have failed to dominate in research. We developed a novel deep learning (DL)-methodology for end-diastolic frame detection in IVUS and compared its efficacy against expert analysts and a previously established methodology using electrocardiographic (ECG)-estimations as reference standard. Near-infrared spectroscopy-IVUS (NIRS-IVUS) data were prospectively acquired from 20 coronary arteries and co-registered with the concurrent ECG-signal to identify end-diastolic frames. A DL-methodology which takes advantage of changes in intensity of corresponding pixels in consecutive NIRS-IVUS frames and consists of a network model designed in a bidirectional gated-recurrent-unit (Bi-GRU) structure was trained to detect end-diastolic frames. The efficacy of the DL-methodology in identifying end-diastolic frames was compared with two expert analysts and a conventional image-based (CIB)-methodology that relies on detecting vessel movement to estimate phases of the cardiac cycle. A window of ± 100 ms from the ECG estimations was used to define accurate end-diastolic frames detection. The ECG-signal identified 3,167 end-diastolic frames. The mean difference between DL and ECG estimations was 3 ± 112 ms while the mean differences between the 1st-analyst and ECG, 2nd-analyst and ECG and CIB-methodology and ECG were 86 ± 192 ms, 78 ± 183 ms and 59 ± 207 ms, respectively. The DL-methodology was able to accurately detect 80.4%, while the two analysts and the CIB-methodology detected 39.0%, 43.4% and 42.8% of end-diastolic frames, respectively (P < 0.05). The DL-methodology can identify NIRS-IVUS end-diastolic frames accurately and should be preferred over expert analysts and CIB-methodologies, which have limited efficacy.
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Affiliation(s)
- Retesh Bajaj
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK.,Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Xingru Huang
- School of Electronic Engineering and Computer Science, Queen Mary University of London, London, UK
| | - Yakup Kilic
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK
| | - Ajay Jain
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK
| | - Anantharaman Ramasamy
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK.,Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Ryo Torii
- Department of Mechanical Engineering, University College London, London, UK
| | - James Moon
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK.,Institute of Cardiovascular Sciences, University College London, London, UK
| | - Tat Koh
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK
| | - Tom Crake
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK
| | - Maurizio K Parker
- Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Vincenzo Tufaro
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK.,Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Patrick W Serruys
- Faculty of Medicine, National Heart & Lung Institute, Imperial College London, London, UK
| | - Francesca Pugliese
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK.,Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Anthony Mathur
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK.,Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Andreas Baumbach
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK.,Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK
| | - Jouke Dijkstra
- Department of Radiology, Division of Image Processing, Leiden University Medical Center, Leiden, The Netherlands
| | - Qianni Zhang
- School of Electronic Engineering and Computer Science, Queen Mary University of London, London, UK
| | - Christos V Bourantas
- Department of Cardiology, Barts Heart Centre, Barts Health NHS Trust, West Smithfield, London, EC1A 7BE, UK. .,Centre for Cardiovascular Medicine and Devices, William Harvey Research Institute, Queen Mary University of London, London, UK. .,Institute of Cardiovascular Sciences, University College London, London, UK.
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Lv R, Maehara A, Matsumura M, Wang L, Wang Q, Zhang C, Guo X, Samady H, Giddens DP, Zheng J, Mintz GS, Tang D. Using optical coherence tomography and intravascular ultrasound imaging to quantify coronary plaque cap thickness and vulnerability: a pilot study. Biomed Eng Online 2020; 19:90. [PMID: 33256759 PMCID: PMC7706023 DOI: 10.1186/s12938-020-00832-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Accepted: 11/17/2020] [Indexed: 11/11/2022] Open
Abstract
Background Detecting coronary vulnerable plaques in vivo and assessing their vulnerability have been great challenges for clinicians and the research community. Intravascular ultrasound (IVUS) is commonly used in clinical practice for diagnosis and treatment decisions. However, due to IVUS limited resolution (about 150–200 µm), it is not sufficient to detect vulnerable plaques with a threshold cap thickness of 65 µm. Optical Coherence Tomography (OCT) has a resolution of 15–20 µm and can measure fibrous cap thickness more accurately. The aim of this study was to use OCT as the benchmark to obtain patient-specific coronary plaque cap thickness and evaluate the differences between OCT and IVUS fibrous cap quantifications. A cap index with integer values 0–4 was also introduced as a quantitative measure of plaque vulnerability to study plaque vulnerability. Methods Data from 10 patients (mean age: 70.4; m: 6; f: 4) with coronary heart disease who underwent IVUS, OCT, and angiography were collected at Cardiovascular Research Foundation (CRF) using approved protocol with informed consent obtained. 348 slices with lipid core and fibrous caps were selected for study. Convolutional Neural Network (CNN)-based and expert-based data segmentation were performed using established methods previously published. Cap thickness data were extracted to quantify differences between IVUS and OCT measurements. Results For the 348 slices analyzed, the mean value difference between OCT and IVUS cap thickness measurements was 1.83% (p = 0.031). However, mean value of point-to-point differences was 35.76%. Comparing minimum cap thickness for each plaque, the mean value of the 20 plaque IVUS-OCT differences was 44.46%, ranging from 2.36% to 91.15%. For cap index values assigned to the 348 slices, the disagreement between OCT and IVUS assignments was 25%. However, for the OCT cap index = 2 and 3 groups, the disagreement rates were 91% and 80%, respectively. Furthermore, the observation of cap index changes from baseline to follow-up indicated that IVUS results differed from OCT by 80%. Conclusions These preliminary results demonstrated that there were significant differences between IVUS and OCT plaque cap thickness measurements. Large-scale patient studies are needed to confirm our findings.
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Affiliation(s)
- Rui Lv
- School of Biological Science and Medical Engineering, Southeast University, #2 SiPailou, Nanjing, China
| | - Akiko Maehara
- The Cardiovascular Research Foundation, Columbia University, New York, USA
| | - Mitsuaki Matsumura
- The Cardiovascular Research Foundation, Columbia University, New York, USA
| | - Liang Wang
- School of Biological Science and Medical Engineering, Southeast University, #2 SiPailou, Nanjing, China
| | - Qingyu Wang
- School of Biological Science and Medical Engineering, Southeast University, #2 SiPailou, Nanjing, China
| | - Caining Zhang
- School of Biological Science and Medical Engineering, Southeast University, #2 SiPailou, Nanjing, China
| | - Xiaoya Guo
- School of Science, Nanjing University of Posts and Telecommunications, Nanjing, China
| | - Habib Samady
- Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA
| | - Don P Giddens
- Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA.,The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology, Atlanta, GA, USA
| | - Jie Zheng
- Mallinckrodt Institute of Radiology, Washington University, St. Louis, MO, USA
| | - Gary S Mintz
- The Cardiovascular Research Foundation, Columbia University, New York, USA
| | - Dalin Tang
- School of Biological Science and Medical Engineering, Southeast University, #2 SiPailou, Nanjing, China. .,Mathematical Sciences Department, Worcester Polytechnic Institute, 100 Institute Road, Worcester, MA, 01609, USA.
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Noroozi A, Rezghi M. A Tensor-Based Framework for rs-fMRI Classification and Functional Connectivity Construction. Front Neuroinform 2020; 14:581897. [PMID: 33328948 PMCID: PMC7734298 DOI: 10.3389/fninf.2020.581897] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Accepted: 08/14/2020] [Indexed: 11/13/2022] Open
Abstract
Recently, machine learning methods have gained lots of attention from researchers seeking to analyze brain images such as Resting-State Functional Magnetic Resonance Imaging (rs-fMRI) to obtain a deeper understanding of the brain and such related diseases, for example, Alzheimer's disease. Finding the common patterns caused by a brain disorder through analysis of the functional connectivity (FC) network along with discriminating brain diseases from normal controls have long been the two principal goals in studying rs-fMRI data. The majority of FC extraction methods calculate the FC matrix for each subject and then use simple techniques to combine them and obtain a general FC matrix. In addition, the state-of-the-art classification techniques for finding subjects with brain disorders also rely on calculating an FC for each subject, vectorizing, and feeding them to the classifier. Considering these problems and based on multi-dimensional nature of the data, we have come up with a novel tensor framework in which a general FC matrix is obtained without the need to construct an FC matrix for each sample. This framework also allows us to reduce the dimensionality and create a novel discriminant function that rather than using FCs works directly with each sample, avoids vectorization in any step, and uses the test data in the training process without forcing any prior knowledge of its label into the classifier. Extensive experiments using the ADNI dataset demonstrate that our proposed framework effectively boosts the fMRI classification performance and reveals novel connectivity patterns in Alzheimer's disease at its early stages.
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Affiliation(s)
| | - Mansoor Rezghi
- Department of Computer Science, Tarbiat Modares University, Tehran, Iran
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36
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Thurnhofer-Hemsi K, Domínguez E. A Convolutional Neural Network Framework for Accurate Skin Cancer Detection. Neural Process Lett 2020. [DOI: 10.1007/s11063-020-10364-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
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Sun H, Yang J, Fan R, Xie K, Wang C, Ni X. Stepwise local stitching ultrasound image algorithms based on adaptive iterative threshold Harris corner features. Medicine (Baltimore) 2020; 99:e22189. [PMID: 32925793 PMCID: PMC7489749 DOI: 10.1097/md.0000000000022189] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/26/2022] Open
Abstract
Herein, a Harris corner detection algorithm is proposed based on the concepts of iterated threshold segmentation and adaptive iterative threshold (AIT-Harris), and a stepwise local stitching algorithm is used to obtain wide-field ultrasound (US) images.Cone-beam computer tomography (CBCT) and US images from 9 cervical cancer patients and 1 prostate cancer patient were examined. In the experiment, corner features were extracted based on the AIT-Harris, Harris, and Morave algorithms. Accordingly, wide-field ultrasonic images were obtained based on the extracted features after local stitching, and the corner matching rates of all tested algorithms were compared. The accuracies of the drawn contours of organs at risk (OARs) were compared based on the stitched ultrasonic images and CBCT.The corner matching rate of the Morave algorithm was compared with those obtained by the Harris and AIT-Harris algorithms, and paired sample t tests were conducted (t = 6.142, t = 31.859, P < .05). The results showed that the differences were statistically significant. The average Dice similarity coefficient between the automatically delineated bladder region based on wide-field US images and the manually delineated bladder region based on ground truth CBCT images was 0.924, and the average Jaccard coefficient was 0.894.The proposed algorithm improved the accuracy of corner detection, and the stitched wide-field US image could modify the delineation range of OARs in the pelvic cavity.
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Affiliation(s)
- Hongfei Sun
- School of Automation, Northwestern Polytechnical University, Xi’an, Shanxi
| | - Jianhua Yang
- School of Automation, Northwestern Polytechnical University, Xi’an, Shanxi
| | - Rongbo Fan
- School of Automation, Northwestern Polytechnical University, Xi’an, Shanxi
| | - Kai Xie
- Second People's Hospital of Changzhou, Nanjing Medical University
- The center of medical physics with Nanjing Medical University
- The key laboratory of medical physics with Changzhou, Changzhou, China
| | - Conghui Wang
- School of Automation, Northwestern Polytechnical University, Xi’an, Shanxi
| | - Xinye Ni
- Second People's Hospital of Changzhou, Nanjing Medical University
- The center of medical physics with Nanjing Medical University
- The key laboratory of medical physics with Changzhou, Changzhou, China
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Niu Z, Lv X, Zhang J, Bao T. High versus Low Mechanical Index Imaging Diagnostic Ultrasound in Patients with Myocardial Infarction: A Therapeutic Application Study. MEDICAL SCIENCE MONITOR : INTERNATIONAL MEDICAL JOURNAL OF EXPERIMENTAL AND CLINICAL RESEARCH 2020; 26:e923583. [PMID: 32790651 PMCID: PMC7446285 DOI: 10.12659/msm.923583] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Background High mechanical index impulse of ultrasound is used for diagnosis of microvascular coronary obstruction and the necrotic area, but an experimental model study suggested that it can restore microvascular and epicardial coronary flow. The purposes of the study were to test the safety and therapeutic efficacy of high acoustic energy diagnostic ultrasound in patients with ST-segment elevation myocardial infarction. Material/Methods Patients with ST-segment elevation myocardial infarction subjected to a low (n=199) or high (n=251) mechanical index ultrasound before and after percutaneous coronary interventions and echocardiographic parameters were evaluated. Coronary angiographies were performed for the assessment of culprit vessels. Thrombolysis in myocardial infarction flow grade 1 or 2 were considered as culprit vessels. Results Patients diagnosed through low acoustic energy ultrasound reported 235 infarct vessels and patients diagnosed through high acoustic energy ultrasound reported 300 infarct vessels. With respect to low acoustic energy, high acoustic energy reduced the number of culprit vessels at post-percutaneous coronary interventions at 48 hours before hospital discharge (P=0.015) and post-percutaneous coronary interventions at 1-month from the baseline interventions (P=0.043). Also, the maximum% ST-segment resolution and an ejection fraction of the left ventricle was increased and microvascular coronary obstruction in infarct vessels was decreased for both evaluation points. High acoustic energy could not affect heart rate (P=0.133) and oxygen saturation (P=0.079). Conclusions High acoustic energy ultrasound is a safe method for diagnosis of ST-segment elevation myocardial infarction and may have therapeutic applications.
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Affiliation(s)
- Zongbao Niu
- Color Ultrasonic Room, Affiliated Hospital of Hebei University, Baoding, Hebei, China (mainland)
| | - Xiaolan Lv
- Color Ultrasonic Room, Affiliated Hospital of Hebei University, Baoding, Hebei, China (mainland)
| | - Jianhua Zhang
- Department of Cardiology, Handan Shengji Tumor Hospital, Handan, Hebei, China (mainland)
| | - Tianping Bao
- Color Ultrasonic Room, Baoding No. 1 Central Hospital, Baoding, Hebei, China (mainland)
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SONG LUJIE, ZOU HAIBO, JI ZHENYU, XIE XIAOMING, LI WEI. A NOVEL ITERATIVE MATCHING SCHEME BASED ON HOMOGRAPHY METHOD FOR X-RAY IMAGE. J MECH MED BIOL 2020. [DOI: 10.1142/s0219519420500384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Purpose anterior cervical decompression and fusion is a common surgical procedure. Traditionally, experienced doctors observe X-ray films regularly examined by patients to determine postoperative conditions by observing the tiny movements between the limited vertebral bodies. But it is not accurate. This may lead to error diagnostics and serious deterioration of the condition and secondary injury to the patient and will also put a greater financial burden on them. Doctors need a quantitative standard to determine small motion with limited vertebral landmarks after surgery. Computer vision technology is needed to match the over-extension and over-flexion cervical vertebral body to provide objective measurement data for further quantification of intervertebral activity. Based on conventional scheme, the point mean square error is used as the evaluation criterion of the matching effect, and the iterative matching scheme is proposed to improve the stability of the original scheme. The cervical X-ray films of patients from the China–Japan Friendship Hospital were collected as samples to verify the reliability of the scheme. Compared with the existing image matching schemes based on feature points, our scheme is superior in matching effect, matching speed and stability. This scheme can provide a solid foundation for further assisting doctors in the study of rehabilitation after anterior cervical fusion.
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Affiliation(s)
- LUJIE SONG
- Department of Orthopedics, China-Japan Friendship Hospital, Beijing 100029, P. R. China
- College of Information Science and Technology, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - HAIBO ZOU
- Department of Orthopedics, China-Japan Friendship Hospital, Beijing 100029, P. R. China
| | - ZHENYU JI
- College of Information Science and Technology, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - XIAOMING XIE
- College of Information Science and Technology, Beijing University of Chemical Technology, Beijing 100029, P. R. China
| | - WEI LI
- School of Information and Electronics, Beijing Institute of Technology, Haidian District 100811, P. R. China
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Abdeltawab H, Khalifa F, Taher F, Alghamdi NS, Ghazal M, Beache G, Mohamed T, Keynton R, El-Baz A. A deep learning-based approach for automatic segmentation and quantification of the left ventricle from cardiac cine MR images. Comput Med Imaging Graph 2020; 81:101717. [PMID: 32222684 PMCID: PMC7232687 DOI: 10.1016/j.compmedimag.2020.101717] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 02/14/2020] [Accepted: 03/10/2020] [Indexed: 12/15/2022]
Abstract
Cardiac MRI has been widely used for noninvasive assessment of cardiac anatomy and function as well as heart diagnosis. The estimation of physiological heart parameters for heart diagnosis essentially require accurate segmentation of the Left ventricle (LV) from cardiac MRI. Therefore, we propose a novel deep learning approach for the automated segmentation and quantification of the LV from cardiac cine MR images. We aim to achieve lower errors for the estimated heart parameters compared to the previous studies by proposing a novel deep learning segmentation method. Our framework starts by an accurate localization of the LV blood pool center-point using a fully convolutional neural network (FCN) architecture called FCN1. Then, a region of interest (ROI) that contains the LV is extracted from all heart sections. The extracted ROIs are used for the segmentation of LV cavity and myocardium via a novel FCN architecture called FCN2. The FCN2 network has several bottleneck layers and uses less memory footprint than conventional architectures such as U-net. Furthermore, a new loss function called radial loss that minimizes the distance between the predicted and true contours of the LV is introduced into our model. Following myocardial segmentation, functional and mass parameters of the LV are estimated. Automated Cardiac Diagnosis Challenge (ACDC-2017) dataset was used to validate our framework, which gave better segmentation, accurate estimation of cardiac parameters, and produced less error compared to other methods applied on the same dataset. Furthermore, we showed that our segmentation approach generalizes well across different datasets by testing its performance on a locally acquired dataset. To sum up, we propose a deep learning approach that can be translated into a clinical tool for heart diagnosis.
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Affiliation(s)
- Hisham Abdeltawab
- Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA
| | - Fahmi Khalifa
- Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA
| | - Fatma Taher
- College of Technological Innovation, Zayed University, Dubai, United Arab Emirates
| | - Norah Saleh Alghamdi
- College of Computer and Information Science, Princess Nourah bint Abdulrahman University, Saudi Arabia
| | - Mohammed Ghazal
- Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA
| | - Garth Beache
- Department of Radiology, University of Louisville, Louisville, KY 40202, USA
| | - Tamer Mohamed
- Institute of Molecular Cardiology, University of Louisville, Louisville, KY 40202, USA
| | - Robert Keynton
- Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA
| | - Ayman El-Baz
- Department of Bioengineering, University of Louisville, Louisville, KY 40292, USA.
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Cao Y, Xiao X, Liu Z, Yang M, Sun D, Guo W, Cui L, Zhang P. Detecting vulnerable plaque with vulnerability index based on convolutional neural networks. Comput Med Imaging Graph 2020; 81:101711. [PMID: 32155412 DOI: 10.1016/j.compmedimag.2020.101711] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2019] [Revised: 01/29/2020] [Accepted: 02/16/2020] [Indexed: 10/25/2022]
Abstract
Plaque rupture and subsequent thrombosis are major processes of acute cardiovascular events. The Vulnerability Index is a very important indicator of whether a plaque is ruptured, and these easily ruptured or fragile plaques can be detected early. The higher the general vulnerability index, the higher the instability of the plaque. Therefore, determining a clear vulnerability index classification point can effectively reduce unnecessary interventional therapy. However, the current critical value of the vulnerability index has not been well defined. In this study, we proposed a neural network-based method to determine the critical point of vulnerability index that distinguishes vulnerable plaques from stable ones. Firstly, based on MatConvNet, the intravascular ultrasound images under different vulnerability index labels are classified. Different vulnerability indexes can obtain different accuracy rates for the demarcation points. The corresponding data points are fitted to find the existing relationship to judge the highest classification. In this way, the vulnerability index corresponding to the highest classification accuracy rate is judged. Then the article is based on the same experiment of different components of the aortic artery in the artificial neural network, and finally the vulnerability index corresponding to the highest classification accuracy can be obtained. The results show that the best vulnerability index point is 1.716 when the experiment is based on the intravascular ultrasound image, and the best vulnerability index point is 1.607 when the experiment is based on the aortic artery component data. Moreover, the vulnerability index and classification accuracy rate has a periodic relationship within a certain range, and finally the highest AUC is 0.7143 based on the obtained vulnerability index point on the verification set. In this paper, the convolution neural network is used to find the best vulnerability index classification points. The experimental results show that this method has the guiding significance for the classification and diagnosis of vulnerable plaques, further reduce interventional treatment of cardiovascular disease.
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Affiliation(s)
- Yankun Cao
- The Rsearch Center of Intelligent Medical Information Processing, School of Information Science and Engineering, Shandong University, Qingdao 266237, China; Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University, Jinan 250101, China
| | - Xiaoyan Xiao
- Department of Nephrology, Qilu Hospital of Shandong University, No.107 Wenhuaxi Road, Jinan 250012, China
| | - Zhi Liu
- The Rsearch Center of Intelligent Medical Information Processing, School of Information Science and Engineering, Shandong University, Qingdao 266237, China; Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University, Jinan 250101, China.
| | - Meijun Yang
- The Rsearch Center of Intelligent Medical Information Processing, School of Information Science and Engineering, Shandong University, Qingdao 266237, China
| | - Dianmin Sun
- Department of Thoracic Surgery, Shandong Cancer Hospital and Institute, Shandong First Medical University and Shandong Academy of Medical Sciences, Jinan 250117, Shandong, China
| | - Wei Guo
- Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University, Jinan 250101, China
| | - Lizhen Cui
- Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University, Jinan 250101, China
| | - Pengfei Zhang
- Key Laboratory of Cardiovascular Remodeling and Function Research, Chinese Ministry of Education and Chinese National Health Commission, Department of Cardiology, Qilu Hospital of Shandong University. N0.107 Wenhuaxi Road, Jinan, Shanodng Province, China.
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Gao S, Zheng Y, Guo X. Gated recurrent unit-based heart sound analysis for heart failure screening. Biomed Eng Online 2020; 19:3. [PMID: 31931811 PMCID: PMC6958660 DOI: 10.1186/s12938-020-0747-x] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Accepted: 01/06/2020] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Heart failure (HF) is a type of cardiovascular disease caused by abnormal cardiac structure and function. Early screening of HF has important implication for treatment in a timely manner. Heart sound (HS) conveys relevant information related to HF; this study is therefore based on the analysis of HS signals. The objective is to develop an efficient tool to identify subjects of normal, HF with preserved ejection fraction and HF with reduced ejection fraction automatically. METHODS We proposed a novel HF screening framework based on gated recurrent unit (GRU) model in this study. The logistic regression-based hidden semi-Markov model was adopted to segment HS frames. Normalized frames were taken as the input of the proposed model which can automatically learn the deep features and complete the HF screening without de-nosing and hand-crafted feature extraction. RESULTS To evaluate the performance of proposed model, three methods are used for comparison. The results show that the GRU model gives a satisfactory performance with average accuracy of 98.82%, which is better than other comparison models. CONCLUSION The proposed GRU model can learn features from HS directly, which means it can be independent of expert knowledge. In addition, the good performance demonstrates the effectiveness of HS analysis for HF early screening.
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Affiliation(s)
- Shan Gao
- Key Laboratory of Biorheology Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400044, China
| | - Yineng Zheng
- Department of Radiology, The First Affiliated Hospital of Chongqing Medical University, Chongqing, 400016, China
| | - Xingming Guo
- Key Laboratory of Biorheology Science and Technology, Ministry of Education, College of Bioengineering, Chongqing University, Chongqing, 400044, China.
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