1
|
Murray M, Wright J, Araya-Ajoy YG. Evolutionary rescue from climate change: male indirect genetic effects on lay-dates and their consequences for population persistence. Evol Lett 2024; 8:137-148. [PMID: 38487362 PMCID: PMC10939382 DOI: 10.1093/evlett/qrad022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2022] [Revised: 04/15/2023] [Accepted: 05/03/2023] [Indexed: 03/17/2024] Open
Abstract
Changes in avian breeding phenology are among the most apparent responses to climate change in free-ranging populations. A key question is whether populations will be able to keep up with the expected rates of environmental change. There is a large body of research on the mechanisms by which avian lay-dates track temperature change and the consequences of (mal)adaptation on population persistence. Often overlooked is the role of males, which can influence the lay-date of their mate through their effect on the prelaying environment. We explore how social plasticity causing male indirect genetic effects can help or hinder population persistence when female genes underpinning lay-date and male genes influencing female's timing of reproduction both respond to climate-mediated selection. We extend quantitative genetic moving optimum models to predict the consequences of social plasticity on the maximum sustainable rate of temperature change, and evaluate our model using a combination of simulated data and empirical estimates from the literature. Our results suggest that predictions for population persistence may be biased if indirect genetic effects and cross-sex genetic correlations are not considered and that the extent of this bias depends on sex differences in how environmental change affects the optimal timing of reproduction. Our model highlights that more empirical work is needed to understand sex-specific effects of environmental change on phenology and the fitness consequences for population dynamics. While we discuss our results exclusively in the context of avian breeding phenology, the approach we take here can be generalized to many different contexts and types of social interaction.
Collapse
Affiliation(s)
- Myranda Murray
- Centre for Biodiversity Dynamics (CBD), Department of Biology, Norwegian University of Science and Technology (NTNU), N-7491 Trondheim, Norway
| | - Jonathan Wright
- Centre for Biodiversity Dynamics (CBD), Department of Biology, Norwegian University of Science and Technology (NTNU), N-7491 Trondheim, Norway
| | - Yimen G Araya-Ajoy
- Centre for Biodiversity Dynamics (CBD), Department of Biology, Norwegian University of Science and Technology (NTNU), N-7491 Trondheim, Norway
| |
Collapse
|
2
|
Tuliozi B, Mantovani R, Schoepf I, Tsuruta S, Mancin E, Sartori C. Genetic correlations of direct and indirect genetic components of social dominance with fitness and morphology traits in cattle. Genet Sel Evol 2023; 55:84. [PMID: 38037008 PMCID: PMC10687847 DOI: 10.1186/s12711-023-00845-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Accepted: 10/02/2023] [Indexed: 12/02/2023] Open
Abstract
BACKGROUND Within the same species, individuals show marked variation in their social dominance. Studies on a handful of populations have indicated heritable genetic variation for this trait, which is determined by both the genetic background of the individual (direct genetic effect) and of its opponent (indirect genetic effect). However, the evolutionary consequences of selection for this trait are largely speculative, as it is not a usual target of selection in livestock populations. Moreover, studying social dominance presents the challenge of working with a phenotype with a mean value that cannot change in the population, as for every winner of an agonistic interaction there will necessarily be a loser. Thus, to investigate what could be the evolutionary response to selection for social dominance, it is necessary to focus on traits that might be correlated with it. This study investigated the genetic correlations of social dominance, both direct and indirect, with several morphology and fitness traits. We used a dataset of agonistic contests involving cattle (Bos taurus): during these contests, pairs of cows compete in ritualized interactions to assess social dominance. The outcomes of 37,996 dominance interactions performed by 8789 cows over 20 years were combined with individual data for fertility, mammary health, milk yield and morphology and analysed using bivariate animal models including indirect genetic effects. RESULTS We found that winning agonistic interactions has a positive genetic correlation with more developed frontal muscle mass, lower fertility, and poorer udder health. We also discovered that the trends of changes in the estimated breeding values of social dominance, udder health and more developed muscle mass were consistent with selection for social dominance in the population. CONCLUSIONS We present evidence that social dominance is genetically correlated with fitness traits, as well as empirical evidence of the possible evolutionary trade-offs between these traits. We show that it is feasible to estimate genetic correlations involving dyadic social traits.
Collapse
Affiliation(s)
- Beniamino Tuliozi
- Department of Biology, Duke University, Durham, NC, 27708, USA.
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova, Viale Dell'Università 16, 35020, Legnaro, Italy.
| | - Roberto Mantovani
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova, Viale Dell'Università 16, 35020, Legnaro, Italy
| | - Ivana Schoepf
- Department of Sciences, Augustana Campus, University of Alberta, 4901 46 Ave, Camrose, AB, T4V 2R3, Canada
| | - Shogo Tsuruta
- Department of Animal and Dairy Science, University of Georgia, Athens, GA, 30602, USA
| | - Enrico Mancin
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova, Viale Dell'Università 16, 35020, Legnaro, Italy
| | - Cristina Sartori
- Department of Agronomy, Food, Natural Resources, Animals and Environment, University of Padova, Viale Dell'Università 16, 35020, Legnaro, Italy
| |
Collapse
|
3
|
Renoirt M, Angelier F, Cheron M, Brischoux F. What are the contributions of maternal and paternal traits to fecundity and offspring development? A case study in an amphibian species, the spined toad Bufo spinosus. Curr Zool 2023; 69:527-534. [PMID: 37637310 PMCID: PMC10449425 DOI: 10.1093/cz/zoac072] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Accepted: 08/25/2022] [Indexed: 08/29/2023] Open
Abstract
Assessing the determinants of reproductive success is critical but often complicated because of complex interactions between parental traits and environmental conditions occurring during several stages of a reproductive event. Here, we used a simplified ecological situation-an amphibian species lacking post-oviposition parental care-and a laboratory approach to investigate the relationships between parental (both maternal and paternal) phenotypes (body size and condition) and reproductive success (fecundity, egg size, embryonic and larval duration, larval and metamorphic morphology). We found significant effects of maternal phenotype on fecundity, hatching success, and tadpole size, as well as on the duration of larval development. Interestingly, and more surprisingly, we also found a potential contribution of the paternal phenotype occurring during early (embryonic development duration) offspring development. Although our study focused on life-history traits such as body size and development duration, additional mechanisms involving physiological costs of development may well mediate the relationships between parental phenotypes and offspring development. Future studies are required to decipher the mechanisms underlying our findings in order to clarify the mechanistic basis of the links between parental phenotypes and offspring development.
Collapse
Affiliation(s)
- Matthias Renoirt
- Centre d’Etudes Biologiques de Chizé, CEBC UMR 7372 CNRS-La Rochelle Université, 79360 Villiers en Bois, France
| | - Frédéric Angelier
- Centre d’Etudes Biologiques de Chizé, CEBC UMR 7372 CNRS-La Rochelle Université, 79360 Villiers en Bois, France
| | - Marion Cheron
- Centre d’Etudes Biologiques de Chizé, CEBC UMR 7372 CNRS-La Rochelle Université, 79360 Villiers en Bois, France
| | - François Brischoux
- Centre d’Etudes Biologiques de Chizé, CEBC UMR 7372 CNRS-La Rochelle Université, 79360 Villiers en Bois, France
| |
Collapse
|
4
|
Tuliozi B, Tiezzi F, Schoepf I, Mancin E, Guzzo N, Mantovani R, Sartori C. Genetic correlations and causal effects of fighting ability on fitness traits in cattle reveal antagonistic trade-offs. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.972093] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Complex genetic and phenotypic relationships are theorized to link different fitness components but revealing the correlations occurring among disparate traits requires large datasets of pedigreed populations. In particular, the association between traits beneficial to social dominance with health and fitness could be antagonistic, because of trade-offs, or positive, because of greater resource acquisition by dominant individuals. Studies investigating these relationships found some empirical evidence in support of both theories, mainly using multiple trait models (MTM). However, if a trait giving a social advantage is suspected to affect the expression of other traits, MTM could provide some bias, that structural equation models (SEM) could highlight. We used Aosta Chestnut-Black Pied cattle to investigate whether the fighting ability of cows (the capability of winning social dominance interactions) is genetically correlated with health and fitness traits. We ran both MTM and SEM using a Gibbs sampling algorithm to disentangle the possible causal effects of fighting ability from the genetic correlations that this trait shares with other traits: individual milk yield, somatic cells (representing mammary health), fertility, and longevity. We found antagonistic genetic correlations, similar under both approaches, for fighting ability vs. milk, somatic cells, and fertility, Accordingly, we found only a slight causal effects of fighting ability on these traits (–0.012 to 0.059 in standardized value). However, we found genetic correlations opposite in sign between fighting ability and longevity under MTM (0.237) and SEM (–0.183), suggesting a strong causal effect (0.386 standardized) of fighting ability on longevity. In other words, MTM found a positive correlation between longevity and fighting ability, while SEM found a negative correlation. The explanation could be that for economic reasons dominant cows are kept in this population for longer, thus attaining greater longevity: using MTM, the economic importance of competitions probably covers the true genetic correlation among traits. This artificially simulates a natural situation where an antagonistic genetic correlation between longevity and fighting ability appears positive under MTM due to a non-genetic advantage obtained by the best fighters. The use of SEM to properly assess the relationships among traits is suggested in both evolutionary studies and animal breeding.
Collapse
|
5
|
Bonnet T, Morrissey MB, de Villemereuil P, Alberts SC, Arcese P, Bailey LD, Boutin S, Brekke P, Brent LJN, Camenisch G, Charmantier A, Clutton-Brock TH, Cockburn A, Coltman DW, Courtiol A, Davidian E, Evans SR, Ewen JG, Festa-Bianchet M, de Franceschi C, Gustafsson L, Höner OP, Houslay TM, Keller LF, Manser M, McAdam AG, McLean E, Nietlisbach P, Osmond HL, Pemberton JM, Postma E, Reid JM, Rutschmann A, Santure AW, Sheldon BC, Slate J, Teplitsky C, Visser ME, Wachter B, Kruuk LEB. Genetic variance in fitness indicates rapid contemporary adaptive evolution in wild animals. Science 2022; 376:1012-1016. [PMID: 35617403 DOI: 10.1126/science.abk0853] [Citation(s) in RCA: 51] [Impact Index Per Article: 25.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
The rate of adaptive evolution, the contribution of selection to genetic changes that increase mean fitness, is determined by the additive genetic variance in individual relative fitness. To date, there are few robust estimates of this parameter for natural populations, and it is therefore unclear whether adaptive evolution can play a meaningful role in short-term population dynamics. We developed and applied quantitative genetic methods to long-term datasets from 19 wild bird and mammal populations and found that, while estimates vary between populations, additive genetic variance in relative fitness is often substantial and, on average, twice that of previous estimates. We show that these rates of contemporary adaptive evolution can affect population dynamics and hence that natural selection has the potential to partly mitigate effects of current environmental change.
Collapse
Affiliation(s)
- Timothée Bonnet
- Research School of Biology, Australian National University, Canberra, ACT, Australia
| | | | - Pierre de Villemereuil
- Institut de Systématique, Évolution, Biodiversité (ISYEB), École Pratique des Hautes Études, PSL, MNHN, CNRS, SU, UA, Paris, France.,School of Biological Sciences, University of Auckland, Auckland, New Zealand
| | - Susan C Alberts
- Departments of Biology and Evolutionary Anthropology, Duke University, Durham, NC, USA
| | - Peter Arcese
- Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia, Canada
| | - Liam D Bailey
- Departments of Evolutionary Ecology and Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany
| | - Stan Boutin
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada
| | - Patricia Brekke
- Institute of Zoology, Zoological Society of London, Regents Park, London, UK
| | - Lauren J N Brent
- Centre for Research in Animal Behaviour, University of Exeter, Penryn, UK
| | - Glauco Camenisch
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland
| | - Anne Charmantier
- Centre d'Écologie Fonctionnelle et Évolutive, Université de Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Tim H Clutton-Brock
- Department of Zoology, University of Cambridge, Cambridge, UK.,Mammal Research Institute, University of Pretoria, Pretoria, South Africa
| | - Andrew Cockburn
- Research School of Biology, Australian National University, Canberra, ACT, Australia
| | - David W Coltman
- Department of Biological Sciences, University of Alberta, Edmonton, Alberta, Canada
| | - Alexandre Courtiol
- Departments of Evolutionary Ecology and Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany
| | - Eve Davidian
- Departments of Evolutionary Ecology and Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany
| | - Simon R Evans
- Edward Grey Institute, Department of Zoology, University of Oxford, Oxford, UK.,Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden.,Centre for Ecology and Conservation, University of Exeter, Penryn, UK
| | - John G Ewen
- Institute of Zoology, Zoological Society of London, Regents Park, London, UK
| | | | - Christophe de Franceschi
- Centre d'Écologie Fonctionnelle et Évolutive, Université de Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Lars Gustafsson
- Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden
| | - Oliver P Höner
- Departments of Evolutionary Ecology and Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany
| | - Thomas M Houslay
- Department of Zoology, University of Cambridge, Cambridge, UK.,Centre for Ecology and Conservation, University of Exeter, Penryn, UK
| | - Lukas F Keller
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland.,Zoological Museum, University of Zurich,, Zurich, Switzerland
| | - Marta Manser
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Zurich, Switzerland.,Mammal Research Institute, University of Pretoria, Pretoria, South Africa
| | - Andrew G McAdam
- Department of Ecology and Evolutionary Biology, University of Colorado, Boulder, CO, USA
| | - Emily McLean
- Biology Department, Oxford College, Emory University, Oxford, GA, USA
| | - Pirmin Nietlisbach
- School of Biological Sciences, Illinois State University, Normal, IL, USA
| | - Helen L Osmond
- Research School of Biology, Australian National University, Canberra, ACT, Australia
| | | | - Erik Postma
- Centre for Ecology and Conservation, University of Exeter, Penryn, UK
| | - Jane M Reid
- Centre for Biodiversity Dynamics, Norwegian University of Science and Technology (NTNU), Trondheim, Norway.,School of Biological Sciences, University of Aberdeen, Aberdeen, UK
| | - Alexis Rutschmann
- School of Biological Sciences, University of Auckland, Auckland, New Zealand
| | - Anna W Santure
- School of Biological Sciences, University of Auckland, Auckland, New Zealand
| | - Ben C Sheldon
- Edward Grey Institute, Department of Zoology, University of Oxford, Oxford, UK
| | - Jon Slate
- Ecology and Evolutionary Biology, School of Biosciences, University of Sheffield, Sheffield, UK
| | - Céline Teplitsky
- Centre d'Écologie Fonctionnelle et Évolutive, Université de Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Marcel E Visser
- Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, Netherlands
| | - Bettina Wachter
- Departments of Evolutionary Ecology and Evolutionary Genetics, Leibniz Institute for Zoo and Wildlife Research, Berlin, Germany
| | - Loeske E B Kruuk
- Research School of Biology, Australian National University, Canberra, ACT, Australia.,Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK
| |
Collapse
|
6
|
Reid JM, Acker P. Conceptualizing the evolutionary quantitative genetics of phenological life‐history events: Breeding time as a plastic threshold trait. Evol Lett 2022; 6:220-233. [PMID: 35784452 PMCID: PMC9233176 DOI: 10.1002/evl3.278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 01/22/2022] [Accepted: 01/30/2022] [Indexed: 11/06/2022] Open
Affiliation(s)
- Jane M. Reid
- Centre for Biodiversity Dynamics NTNU Trondheim 7491 Norway
- School of Biological Sciences University of Aberdeen Aberdeen AB24 2TZ United Kingdom
| | - Paul Acker
- Centre for Biodiversity Dynamics NTNU Trondheim 7491 Norway
| |
Collapse
|
7
|
Biquet J, Bonamour S, de Villemereuil P, de Franceschi C, Teplitsky C. Phenotypic plasticity drives phenological changes in a Mediterranean blue tit population. J Evol Biol 2021; 35:347-359. [PMID: 34669221 DOI: 10.1111/jeb.13950] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2021] [Revised: 10/05/2021] [Accepted: 10/08/2021] [Indexed: 01/14/2023]
Abstract
Earlier phenology induced by climate change, such as the passerines' breeding time, is observed in many natural populations. Understanding the nature of such changes is key to predict the responses of wild populations to climate change. Genetic changes have been rarely investigated for laying date, though it has been shown to be heritable and under directional selection, suggesting that the trait could evolve. In a Corsican blue tit population, the birds' laying date has significantly advanced over 40 years, and we here determine whether this response is of plastic or evolutionary origin, by comparing the predictions of the breeder's and the Robertson-Price (STS) equations, to the observed genetic changes. We compare the results obtained for two fitness proxies (fledgling and recruitment success), using models accounting for their zero inflation. Because the trait appears heritable and under directional selection, the breeder's equation predicts that genetic changes could drive a significant part of the phenological change observed. We, however, found that fitness proxies and laying date are not genetically correlated. The STS, therefore, predicts no evolution of the breeding time, predicting correctly the absence of trend in breeding values. Our results also emphasize that when investigating selection on a plastic trait under fluctuating selection, part of the fitness-trait phenotypic covariance can be due to within individual covariance. In the case of repeated measurements, splitting within and between individual covariance can shift our perspective on the actual intensity of selection over multiple selection episodes, shedding light on the potential for the trait to evolve.
Collapse
Affiliation(s)
- Juliette Biquet
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France
| | - Suzanne Bonamour
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France.,Centre d'Ecologie et des Sciences de la Conservation (CESCO, UMR 7204), Muséum national d'histoire naturelle, CNRS, Sorbonne Université, Paris, France
| | - Pierre de Villemereuil
- CEFE, Univ Montpellier, CNRS, EPHE, IRD, Montpellier, France.,Institut de Systématique, Évolution, Biodiversité (ISYEB), École Pratique des Hautes Études, PSL, MNHN, CNRS, SU, UA, Paris, France
| | | | | |
Collapse
|
8
|
Reproduction is affected by individual breeding experience but not pair longevity in a socially monogamous bird. Behav Ecol Sociobiol 2021. [DOI: 10.1007/s00265-021-03042-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
9
|
Santostefano F, Allegue H, Garant D, Bergeron P, Réale D. Indirect genetic and environmental effects on behaviors, morphology, and life-history traits in a wild Eastern chipmunk population. Evolution 2021; 75:1492-1512. [PMID: 33855713 DOI: 10.1111/evo.14232] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2020] [Revised: 03/18/2021] [Accepted: 03/22/2021] [Indexed: 12/24/2022]
Abstract
Additive genetic variance in a trait reflects its potential to respond to selection, which is key for adaptive evolution in the wild. Social interactions contribute to this genetic variation through indirect genetic effects-the effect of an individual's genotype on the expression of a trait in a conspecific. However, our understanding of the evolutionary importance of indirect genetic effects in the wild and of their strength relative to direct genetic effects is limited. In this study, we assessed how indirect genetic effects contribute to genetic variation of behavioral, morphological, and life-history traits in a wild Eastern chipmunk population. We also compared the contribution of direct and indirect genetic effects to traits evolvabilities and related these effects to selection strength across traits. We implemented a novel approach integrating the spatial structure of social interactions in quantitative genetic analyses, and supported the reliability of our results with power analyses. We found indirect genetic effects for trappability and relative fecundity, little direct genetic effects in all traits and a large role for direct and indirect permanent environmental effects. Our study highlights the potential evolutionary role of social permanent environmental effects in shaping phenotypes of conspecifics through adaptive phenotypic plasticity.
Collapse
Affiliation(s)
- Francesca Santostefano
- Département des Sciences Biologiques, Université du Québec à Montréal, Montréal, Québec, Canada
| | - Hassen Allegue
- Département des Sciences Biologiques, Université du Québec à Montréal, Montréal, Québec, Canada
| | - Dany Garant
- Département de Biologie, Faculté des Sciences, Université de Sherbrooke, Sherbrooke, Québec, Canada
| | - Patrick Bergeron
- Department of Biological Sciences, Bishop's University, Sherbrooke, Québec, Canada
| | - Denis Réale
- Département des Sciences Biologiques, Université du Québec à Montréal, Montréal, Québec, Canada
| |
Collapse
|
10
|
Reid JM, Arcese P, Nietlisbach P, Wolak ME, Muff S, Dickel L, Keller LF. Immigration counter-acts local micro-evolution of a major fitness component: Migration-selection balance in free-living song sparrows. Evol Lett 2021; 5:48-60. [PMID: 33552535 PMCID: PMC7857281 DOI: 10.1002/evl3.214] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2020] [Revised: 11/28/2020] [Accepted: 12/18/2020] [Indexed: 01/11/2023] Open
Abstract
Ongoing adaptive evolution, and resulting “evolutionary rescue” of declining populations, requires additive genetic variation in fitness. Such variation can be increased by gene flow resulting from immigration, potentially facilitating evolution. But, gene flow could in fact constrain rather than facilitate local adaptive evolution if immigrants have low additive genetic values for local fitness. Local migration‐selection balance and micro‐evolutionary stasis could then result. However, key quantitative genetic effects of natural immigration, comprising the degrees to which gene flow increases the total local additive genetic variance yet counteracts local adaptive evolutionary change, have not been explicitly quantified in wild populations. Key implications of gene flow for population and evolutionary dynamics consequently remain unclear. Our quantitative genetic analyses of long‐term data from free‐living song sparrows (Melospiza melodia) show that mean breeding value for local juvenile survival to adulthood, a major component of fitness, increased across cohorts more than expected solely due to drift. Such micro‐evolutionary change should be expected given nonzero additive genetic variance and consistent directional selection. However, this evolutionary increase was counteracted by negative additive genetic effects of recent immigrants, which increased total additive genetic variance but prevented a net directional evolutionary increase in total additive genetic value. These analyses imply an approximate quantitative genetic migration‐selection balance in a major fitness component, and hence demonstrate a key mechanism by which substantial additive genetic variation can be maintained yet decoupled from local adaptive evolutionary change.
Collapse
Affiliation(s)
- Jane M Reid
- Centre for Biodiversity Dynamics NTNU Trondheim Norway.,School of Biological Sciences University of Aberdeen Aberdeen UK
| | - Peter Arcese
- Forest & Conservation Sciences University of British Columbia Vancouver British Columbia Canada
| | - Pirmin Nietlisbach
- School of Biological Sciences Illinois State University Normal Illinois USA
| | - Matthew E Wolak
- Department of Biological Sciences Auburn University Auburn Alaska USA
| | - Stefanie Muff
- Centre for Biodiversity Dynamics NTNU Trondheim Norway.,Department of Mathematical Sciences NTNU Trondheim Norway
| | - Lisa Dickel
- Centre for Biodiversity Dynamics NTNU Trondheim Norway
| | - Lukas F Keller
- Department of Evolutionary Biology & Environmental Studies University of Zurich Zurich Switzerland.,Zoological Museum University of Zurich Zurich Switzerland
| |
Collapse
|
11
|
Moiron M, Araya-Ajoy YG, Teplitsky C, Bouwhuis S, Charmantier A. Understanding the Social Dynamics of Breeding Phenology: Indirect Genetic Effects and Assortative Mating in a Long-Distance Migrant. Am Nat 2020; 196:566-576. [PMID: 33064582 DOI: 10.1086/711045] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
AbstractPhenological traits, such as the timing of reproduction, are often influenced by social interactions between paired individuals. Such partner effects may occur when pair members affect each other's prebreeding environment. Partner effects can be environmentally and/or genetically determined, and quantifying direct and indirect genetic effects is important for understanding the evolutionary dynamics of phenological traits. Here, using 26 years of data from a pedigreed population of a migratory seabird, the common tern (Sterna hirundo), we investigate male and female effects on female laying date. We find that female laying date harbors both genetic and environmental variation and is additionally influenced by the environmental and, to a lesser extent, genetic component of its mate. We demonstrate this partner effect to be largely explained by male arrival date. Interestingly, analyses of mating patterns with respect to arrival date show mating to be strongly assortative, and using simulations we show that assortative mating leads to overestimation of partner effects. Our study provides evidence for partner effects on breeding phenology in a long-distance migrant while uncovering the potential causal pathways underlying the observed effects and raising awareness for confounding effects resulting from assortative mating or other common environmental effects.
Collapse
|
12
|
Cooper EB. Digest: Indirect genetic effects of males on female reproductive traits in the wild. Evolution 2020; 74:2421-2422. [PMID: 32749668 DOI: 10.1111/evo.14074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 07/31/2020] [Indexed: 11/27/2022]
Abstract
The indirect genetic effects of fathers on the expression and evolution of female reproductive traits in the wild is not well understood. In a wild population of great tits (Parus major), Evans et al. estimated the genetic and nongenetic effects of male mates on two female reproductive traits, lay date and clutch size. The estimated heritability of lay date (but not of clutch size) was increased by 1.5 times after accounting for male indirect genetic effects. This finding illustrates the importance of considering the effects of social partners in classic quantitative genetic models.
Collapse
Affiliation(s)
- Eve B Cooper
- Division of Ecology and Evolution, Research School of Biology, Australian National University, Canberra, Australia
| |
Collapse
|
13
|
|
14
|
Evans SR, Postma E, Sheldon BC. It takes two: Heritable male effects on reproductive timing but not clutch size in a wild bird population*. Evolution 2020; 74:2320-2331. [DOI: 10.1111/evo.13980] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Revised: 03/19/2020] [Accepted: 04/02/2020] [Indexed: 12/29/2022]
Affiliation(s)
- Simon R. Evans
- Edward Grey Institute, Department of Zoology University of Oxford Oxford OX1 3SZ UK
- Centre for Ecology and Conservation University of Exeter Penryn TR10 9FE UK
| | - Erik Postma
- Centre for Ecology and Conservation University of Exeter Penryn TR10 9FE UK
| | - Ben C. Sheldon
- Edward Grey Institute, Department of Zoology University of Oxford Oxford OX1 3SZ UK
| |
Collapse
|
15
|
Gervais L, Hewison AJM, Morellet N, Bernard M, Merlet J, Cargnelutti B, Chaval Y, Pujol B, Quéméré E. Pedigree-free quantitative genetic approach provides evidence for heritability of movement tactics in wild roe deer. J Evol Biol 2020; 33:595-607. [PMID: 31985133 DOI: 10.1111/jeb.13594] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2019] [Revised: 01/07/2020] [Accepted: 01/13/2020] [Indexed: 11/30/2022]
Abstract
Assessing the evolutionary potential of animal populations in the wild is crucial to understanding how they may respond to selection mediated by rapid environmental change (e.g. habitat loss and fragmentation). A growing number of studies have investigated the adaptive role of behaviour, but assessments of its genetic basis in a natural setting remain scarce. We combined intensive biologging technology with genome-wide data and a pedigree-free quantitative genetic approach to quantify repeatability, heritability and evolvability for a suite of behaviours related to the risk avoidance-resource acquisition trade-off in a wild roe deer (Capreolus capreolus) population inhabiting a heterogeneous, human-dominated landscape. These traits, linked to the stress response, movement and space-use behaviour, were all moderately to highly repeatable. Furthermore, the repeatable among-individual component of variation in these traits was partly due to additive genetic variance, with heritability estimates ranging from 0.21 ± 0.08 to 0.70 ± 0.11 and evolvability ranging from 1.1% to 4.3%. Changes in the trait mean can therefore occur under hypothetical directional selection over just a few generations. To the best of our knowledge, this is the first empirical demonstration of additive genetic variation in space-use behaviour in a free-ranging population based on genomic relatedness data. We conclude that wild animal populations may have the potential to adjust their spatial behaviour to human-driven environmental modifications through microevolutionary change.
Collapse
Affiliation(s)
- Laura Gervais
- CEFS, INRAE, Université de Toulouse, Castanet-Tolosan, France.,LTSER ZA PYRénées GARonne, Auzeville-Tolosane, France.,Laboratoire Évolution & Diversité Biologique (EDB UMR 5174), CNRS, IRD, UPS, Université Fédérale de Toulouse Midi-Pyrénées, Toulouse, France
| | - Aidan J M Hewison
- CEFS, INRAE, Université de Toulouse, Castanet-Tolosan, France.,LTSER ZA PYRénées GARonne, Auzeville-Tolosane, France
| | - Nicolas Morellet
- CEFS, INRAE, Université de Toulouse, Castanet-Tolosan, France.,LTSER ZA PYRénées GARonne, Auzeville-Tolosane, France
| | - Maria Bernard
- INRAE, GABI, AgroParisTech, Université Paris-Saclay, Jouy-en-Josas, France.,INRAE, SIGENAE, Jouy-en-Josas, France
| | - Joël Merlet
- CEFS, INRAE, Université de Toulouse, Castanet-Tolosan, France.,LTSER ZA PYRénées GARonne, Auzeville-Tolosane, France
| | - Bruno Cargnelutti
- CEFS, INRAE, Université de Toulouse, Castanet-Tolosan, France.,LTSER ZA PYRénées GARonne, Auzeville-Tolosane, France
| | - Yannick Chaval
- CEFS, INRAE, Université de Toulouse, Castanet-Tolosan, France.,LTSER ZA PYRénées GARonne, Auzeville-Tolosane, France
| | - Benoit Pujol
- Laboratoire Évolution & Diversité Biologique (EDB UMR 5174), CNRS, IRD, UPS, Université Fédérale de Toulouse Midi-Pyrénées, Toulouse, France.,USR 3278 CRIOBE, PSL Université Paris: EPHE-UPVD-CNRS, Université de Perpignan, Perpignan Cedex, France
| | - Erwan Quéméré
- CEFS, INRAE, Université de Toulouse, Castanet-Tolosan, France.,LTSER ZA PYRénées GARonne, Auzeville-Tolosane, France.,ESE, Ecology and Ecosystems Health, Ouest, INRAE, Rennes, France
| |
Collapse
|
16
|
Simmonds EG, Cole EF, Sheldon BC, Coulson T. Testing the effect of quantitative genetic inheritance in structured models on projections of population dynamics. OIKOS 2020. [DOI: 10.1111/oik.06985] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Emily G. Simmonds
- Dept of Zoology, Univ. of Oxford, OX1 3PS UK
- Dept of Mathematical Sciences and Centre for Biodiversity Dynamics, Norwegian Univ. of Science and Technology (NTNU) Norway
| | | | | | - Tim Coulson
- Dept of Zoology, Univ. of Oxford, OX1 3PS UK
| |
Collapse
|
17
|
Nelson-Flower MJ, Germain RR, MacDougall-Shackleton EA, Taylor SS, Arcese P. Purifying Selection in the Toll-Like Receptors of Song Sparrows Melospiza melodia. J Hered 2019; 109:501-509. [PMID: 29893971 DOI: 10.1093/jhered/esy027] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2017] [Accepted: 06/08/2018] [Indexed: 01/22/2023] Open
Abstract
Variation in immune gene sequences is known to influence resistance to infectious diseases and parasites, and hence survival and mate choice, across animal taxa. Toll-like receptors (TLRs) comprise one essential gene family in the vertebrate innate immune system and recognize evolutionarily conserved structures from all major microorganism classes. However, the causes and consequences of TLR variation in passerine birds remain largely unexplored. We examined 7 TLR genes in song sparrows (Melospiza melodia), a species that is studied across North America. We then examined sequences from 4 unduplicated TLRs (TLR1LB, TLR3, TLR4, and TLR15) from birds in 2 parts of the species' range (N = 27, N = 6), tested for evidence of selection, and conducted pilot analyses of the role of TLR heterozygosity in survival. We identified 45 SNPs: 19 caused changes in amino acid sequences and 2 of these were likely deleterious. We found no evidence of codon-level episodic positive selection but detected purifying selection at codons in all TLRs. Contrary to expectations we found no strong correlation between heterozygosity at TLRs and inbreeding coefficient f (estimate ± standard error [SE] = -0.68 ± 0.37, Radj2 = 0.08, F1,25 = 3.38, P = 0.08). In addition, pilot analyses revealed no relationship between TLR heterozygosity and survival (β ± SE: 0.09 ± 2.00, P = 0.96), possibly due to small sample size. Further analyses of genetic diversity in TLRs are likely to advance understanding of the effects of innate immune gene diversity on the fitness and persistence of wild populations.
Collapse
Affiliation(s)
- Martha J Nelson-Flower
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC, Canada
| | | | | | - Sabrina S Taylor
- The School of Renewable Natural Resources, Louisiana State University and AgCenter, Baton Rouge, LA
| | - Peter Arcese
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, BC, Canada
| |
Collapse
|
18
|
Ponzi E, Keller LF, Muff S. The simulation extrapolation technique meets ecology and evolution: A general and intuitive method to account for measurement error. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13255] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Erica Ponzi
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
- Department of Biostatistics, Epidemiology, Biostatistics and Prevention Institute University of Zurich Zurich Switzerland
| | - Lukas F. Keller
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
- Zoological Museum University of Zurich Zurich Switzerland
| | - Stefanie Muff
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
- Department of Biostatistics, Epidemiology, Biostatistics and Prevention Institute University of Zurich Zurich Switzerland
| |
Collapse
|
19
|
Evans SR, Waldvogel D, Vasiljevic N, Postma E. Heritable spouse effects increase evolutionary potential of human reproductive timing. Proc Biol Sci 2019; 285:rspb.2017.2763. [PMID: 29643210 DOI: 10.1098/rspb.2017.2763] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2017] [Accepted: 03/19/2018] [Indexed: 12/31/2022] Open
Abstract
Sexual reproduction is inherently interactive, especially in animal species such as humans that exhibit extended pair bonding. Yet we have little knowledge of the role of male characteristics and their evolutionary impact on reproductive behavioural phenotypes, to the extent that biologists typically consider component traits (e.g. reproductive timing) as female-specific. Based on extensive genealogical data detailing the life histories of 6435 human mothers born across four centuries of modern history, we use an animal modelling approach to estimate the indirect genetic effect of men on the reproductive phenotype of their partners. These analyses show that a woman's reproductive timing (age at first birth) is influenced by her partner's genotype. This indirect genetic effect is positively correlated with the direct genetic effect expressed in women, such that total heritable variance in this trait is doubled when heritable partner effects are considered. Our study thus suggests that much of the heritable variation in women's reproductive timing is mediated via partner effects, and that the evolutionary potential of this trait is far greater than previously appreciated.
Collapse
Affiliation(s)
- Simon R Evans
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland .,Edward Grey Institute, Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - Dominique Waldvogel
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland
| | - Nina Vasiljevic
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland
| | - Erik Postma
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Winterthurerstrasse 190, 8057 Zurich, Switzerland.,Centre for Ecology and Conservation, University of Exeter, Cornwall Campus, Penryn TR10 9FE, UK
| |
Collapse
|
20
|
Gold S, Regan CE, McLoughlin PD, Gilleard JS, Wilson AJ, Poissant J. Quantitative genetics of gastrointestinal strongyle burden and associated body condition in feral horses. INTERNATIONAL JOURNAL FOR PARASITOLOGY-PARASITES AND WILDLIFE 2019; 9:104-111. [PMID: 31011533 PMCID: PMC6462499 DOI: 10.1016/j.ijppaw.2019.03.010] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/06/2018] [Revised: 02/16/2019] [Accepted: 03/10/2019] [Indexed: 12/12/2022]
Abstract
Variability in host resistance or tolerance to parasites is nearly ubiquitous, and is of key significance in understanding the evolutionary processes shaping host-parasite interactions. While ample research has been conducted on the genetics of parasite burden in livestock, relatively little has been done in free-living populations. Here, we investigate the sources of (co)variation in strongyle nematode faecal egg count (FEC) and body condition in Sable Island horses, a feral population in which parasite burden has previously been shown to negatively correlate with body condition. We used the quantitative genetic "animal model" to understand the sources of (co)variation in these traits, and tested for impacts of an important spatial gradient in habitat quality on the parameter estimates. Although FEC is significantly heritable (h 2 = 0.43 ± 0.11), there was no evidence for significant additive genetic variation in body condition (h 2 = 0.04 ± 0.07), and therefore there was also no significant genetic covariance between the two traits. The negative phenotypic covariance between these traits therefore does not derive principally from additive genetic effects. We also found that both FEC and body condition increase from east to west across the island, which indicates that the longitudinal environmental gradient is not responsible for the negative phenotypic association observed between these traits. There was also little evidence to suggest that quantitative genetic parameters were biased when an individual's location along the island's environmental gradient was not incorporated into the analysis. This research provides new and important insights into the genetic basis and adaptive potential of parasite resistance in free-living animals, and highlights the importance of environmental heterogeneity in modulating host-parasite interactions in wild vertebrate systems.
Collapse
Affiliation(s)
- Susannah Gold
- College of Life and Environmental Sciences, University of Exeter, Cornwall Campus, Penryn, TR10 9FE, UK
| | - Charlotte E Regan
- Department of Biology, University of Saskatchewan, 112 Science Place, Saskatoon, SK, S7N 5E2, Canada
| | - Philip D McLoughlin
- Department of Biology, University of Saskatchewan, 112 Science Place, Saskatoon, SK, S7N 5E2, Canada
| | - John S Gilleard
- Department of Comparative Biology and Experimental Medicine, University of Calgary, 3280 Hospital Drive, Calgary, AB, T2N 4Z6, Canada
| | - Alastair J Wilson
- College of Life and Environmental Sciences, University of Exeter, Cornwall Campus, Penryn, TR10 9FE, UK
| | - Jocelyn Poissant
- Department of Ecosystem and Public Health, University of Calgary, 3280 Hospital Drive, Calgary, AB, T2N 4Z6, Canada
| |
Collapse
|
21
|
Fisher DN, Wilson AJ, Boutin S, Dantzer B, Lane JE, Coltman DW, Gorrell JC, McAdam AG. Social effects of territorial neighbours on the timing of spring breeding in North American red squirrels. J Evol Biol 2019; 32:559-571. [DOI: 10.1111/jeb.13437] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2018] [Revised: 02/25/2019] [Accepted: 03/01/2019] [Indexed: 02/06/2023]
Affiliation(s)
- David N. Fisher
- Department for Integrative Biology University of Guelph Guelph Ontario Canada
- Department of Psychology, Neuroscience & Behaviour McMaster University Hamilton Ontario Canada
| | - Alastair J. Wilson
- Centre for Ecology and Conservation University of Exeter Penryn Cornwall UK
| | - Stan Boutin
- Department of Biological Sciences University of Alberta Edmonton Alberta Canada
| | - Ben Dantzer
- Department of Psychology University of Michigan Ann Arbour Michigan
- Department of Ecology and Evolutionary Biology University of Michigan Ann Arbour Michigan
| | - Jeffrey E. Lane
- Department of Biology University of Saskatchewan Saskatoon Saskatchewan Canada
| | - David W. Coltman
- Department of Biological Sciences University of Alberta Edmonton Alberta Canada
| | - Jamie C. Gorrell
- Biology Department University of Vancouver Island Nanaimo British Columbia Canada
| | - Andrew G. McAdam
- Department for Integrative Biology University of Guelph Guelph Ontario Canada
| |
Collapse
|
22
|
Dewan I, Garland T, Hiramatsu L, Careau V. I Smell a Mouse: Indirect Genetic Effects on Voluntary Wheel-Running Distance, Duration and Speed. Behav Genet 2018; 49:49-59. [PMID: 30324246 DOI: 10.1007/s10519-018-9930-2] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2017] [Accepted: 09/26/2018] [Indexed: 01/13/2023]
Abstract
Indirect genetic effects (IGEs; the heritable influence of one organism on a conspecific) can affect the evolutionary dynamics of complex traits, including behavior. Voluntary wheel running is an important model system in quantitative genetic studies of behavior, but the possibility of IGEs on wheel running and its components (time spent running and average running speed) has not been examined. Here, we analyze a dataset from a replicated selection experiment on wheel running (11,420 control and 26,575 selected mice measured over 78 generations) in which the standard measurement protocol allowed for the possibility of IGEs occurring through odors because mice were provided with clean cages attached to a clean wheel or a wheel previously occupied by another mouse for 6 days. Overall, mice ran less on previously occupied wheels than on clean wheels, and they ran significantly less when following a male than a female. Significant interactions indicated that the reduction in running was more pronounced for females than males and for mice from selected lines than control mice. Pedigree-based "animal model" analyses revealed significant IGEs for running distance (the trait under selection), with effect sizes considerably higher for the initial/exploratory phase (i.e., first two of six test days). Our results demonstrate that IGEs can occur in mice interacting through scent only, possibly because they attempt to avoid conspecifics.
Collapse
Affiliation(s)
- Ian Dewan
- Department of Biology, University of Ottawa, Ottawa, ON, Canada. .,Department of Biology, Carleton University, Ottawa, ON, Canada.
| | - Theodore Garland
- Department of Evolution, Ecology, and Organismal Biology, University of California, Riverside, CA, USA
| | - Layla Hiramatsu
- Department of Evolution, Ecology, and Organismal Biology, University of California, Riverside, CA, USA.,Friedrich Miescher Laboratory of the Max Planck Society, Tübingen, Germany
| | - Vincent Careau
- Department of Biology, University of Ottawa, Ottawa, ON, Canada
| |
Collapse
|
23
|
Thomson CE, Winney IS, Salles OC, Pujol B. A guide to using a multiple-matrix animal model to disentangle genetic and nongenetic causes of phenotypic variance. PLoS One 2018; 13:e0197720. [PMID: 30312317 PMCID: PMC6193571 DOI: 10.1371/journal.pone.0197720] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2018] [Accepted: 09/19/2018] [Indexed: 11/19/2022] Open
Abstract
Non-genetic influences on phenotypic traits can affect our interpretation of genetic variance and the evolutionary potential of populations to respond to selection, with consequences for our ability to predict the outcomes of selection. Long-term population surveys and experiments have shown that quantitative genetic estimates are influenced by nongenetic effects, including shared environmental effects, epigenetic effects, and social interactions. Recent developments to the "animal model" of quantitative genetics can now allow us to calculate precise individual-based measures of non-genetic phenotypic variance. These models can be applied to a much broader range of contexts and data types than used previously, with the potential to greatly expand our understanding of nongenetic effects on evolutionary potential. Here, we provide the first practical guide for researchers interested in distinguishing between genetic and nongenetic causes of phenotypic variation in the animal model. The methods use matrices describing individual similarity in nongenetic effects, analogous to the additive genetic relatedness matrix. In a simulation of various phenotypic traits, accounting for environmental, epigenetic, or cultural resemblance between individuals reduced estimates of additive genetic variance, changing the interpretation of evolutionary potential. These variances were estimable for both direct and parental nongenetic variances. Our tutorial outlines an easy way to account for these effects in both wild and experimental populations. These models have the potential to add to our understanding of the effects of genetic and nongenetic effects on evolutionary potential. This should be of interest both to those studying heritability, and those who wish to understand nongenetic variance.
Collapse
Affiliation(s)
- Caroline E. Thomson
- Laboratoire Evolution & Diversité Biologique (EDB UMR 5174), Université Fédérale Toulouse, Midi-Pyrénées, CNRS, ENSFEA, IRD, UPS, France
| | - Isabel S. Winney
- Laboratoire Evolution & Diversité Biologique (EDB UMR 5174), Université Fédérale Toulouse, Midi-Pyrénées, CNRS, ENSFEA, IRD, UPS, France
| | - Océane C. Salles
- Laboratoire Evolution & Diversité Biologique (EDB UMR 5174), Université Fédérale Toulouse, Midi-Pyrénées, CNRS, ENSFEA, IRD, UPS, France
| | - Benoit Pujol
- Laboratoire Evolution & Diversité Biologique (EDB UMR 5174), Université Fédérale Toulouse, Midi-Pyrénées, CNRS, ENSFEA, IRD, UPS, France
- Laboratoire d’Excellence “CORAIL”, Perpignan, France
| |
Collapse
|
24
|
Han CS, Tuni C, Ulcik J, Dingemanse NJ. Increased developmental density decreases the magnitude of indirect genetic effects expressed during agonistic interactions in an insect. Evolution 2018; 72:2435-2448. [PMID: 30221347 DOI: 10.1111/evo.13600] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2018] [Revised: 08/07/2018] [Accepted: 08/28/2018] [Indexed: 12/19/2022]
Abstract
The expression of aggression depends not only on the direct genetic effects (DGEs) of an individual's genes on its own behavior, but also on indirect genetic effects (IGEs) caused by heritable phenotypes expressed by social partners. IGEs can affect the amount of heritable variance on which selection can act. Despite the important roles of IGEs in the evolutionary process, it remains largely unknown whether the strength of IGEs varies across life stages or competitive regimes. Based on manipulations of nymphal densities and > 3000 pair-wise aggression tests across multiple life stages, we experimentally demonstrate that IGEs on aggression are stronger in field crickets (Gryllus bimaculatus) that develop at lower densities than in those that develop at higher densities, and that these effects persist with age. The existence of density-dependent IGEs implies that social interactions strongly determine the plastic expression of aggression when competition for resources is relaxed. A more competitive (higher density) rearing environment may fail to provide crickets with sufficient resources to develop social cognition required for strong IGEs. The contribution of IGEs to evolutionary responses was greater at lower densities. Our study thereby demonstrates the importance of considering IGEs in density-dependent ecological and evolutionary processes.
Collapse
Affiliation(s)
- Chang S Han
- Behavioural Ecology, Department of Biology, Ludwig-Maximilians University of Munich, Planegg-Martinsried, Germany.,Current Address: School of Biological Sciences, Seoul National University, Seoul, Korea
| | - Cristina Tuni
- Behavioural Ecology, Department of Biology, Ludwig-Maximilians University of Munich, Planegg-Martinsried, Germany
| | - Jakob Ulcik
- Behavioural Ecology, Department of Biology, Ludwig-Maximilians University of Munich, Planegg-Martinsried, Germany
| | - Niels J Dingemanse
- Behavioural Ecology, Department of Biology, Ludwig-Maximilians University of Munich, Planegg-Martinsried, Germany
| |
Collapse
|
25
|
Germain RR, Wolak ME, Reid JM. Individual repeatability and heritability of divorce in a wild population. Biol Lett 2018; 14:rsbl.2018.0061. [PMID: 29899127 DOI: 10.1098/rsbl.2018.0061] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2018] [Accepted: 05/16/2018] [Indexed: 11/12/2022] Open
Abstract
Understanding micro-evolutionary responses of mating systems to contemporary selection requires estimating sex-specific additive genetic variances and cross-sex genetic covariances in key reproductive strategy traits. One key trait comprises the occurrence of divorce versus mate fidelity across sequential reproductive attempts. If divorce represents an evolving behavioural strategy that responds to selection it must have non-zero individual repeatability and heritability, but quantitative estimates from wild populations are scarce. We used 39 years of individual breeding records and pedigree data from free-living song sparrows (Melospiza melodia) to quantify sex-specific permanent individual and additive genetic variances, and hence estimate repeatability and heritability, in liability for divorce. We estimated moderate repeatability among females, but little repeatability among males. Estimates of additive genetic variance were small in both sexes, and the cross-sex genetic covariance was close to zero. Consequently, the total heritability was small but likely non-zero, indicating low potential for micro-evolutionary response to selection. Rapid micro-evolutionary change of divorce rate, therefore, appears unlikely, even if there were substantial fitness benefits of divorce and resulting selection.
Collapse
Affiliation(s)
- Ryan R Germain
- School of Biological Sciences, University of Aberdeen, Aberdeen, UK
| | - Matthew E Wolak
- School of Biological Sciences, University of Aberdeen, Aberdeen, UK
| | - Jane M Reid
- School of Biological Sciences, University of Aberdeen, Aberdeen, UK
| |
Collapse
|
26
|
Visty H, Wilson S, Germain R, Krippel J, Arcese P. Demography of Sooty Fox Sparrows (Passerella unalaschcensis) following a shift from a migratory to resident life history. CAN J ZOOL 2018. [DOI: 10.1139/cjz-2017-0102] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Identifying causes and consequences of variation in species life history has the potential to improve predictions about how climate and land-use change may affect the demography and distribution of species in future. Sooty Fox Sparrows (Passerella unalaschcensis (J.F. Gmelin, 1789); or commonly grouped within the Fox Sparrow, Passerella iliaca (Merrem, 1786)) were migrants that rarely bred in the Georgia Basin of British Columbia prior to ∼1950 but have since established resident populations. Data on 270 color-banded birds and 54 nests on Mandarte Island, British Columbia, allowed us to estimate demographic vital rates and population growth in one recently established population. Annual fecundity (F), estimated as the product of the number of broods initiated (1.5 ± 0.01; mean ± SD), clutch size (2.82 ± 0.44), and probability of survival to fledging (0.68 ± 0.02), exceeded values reported for migrants, supporting the hypothesis that residents invest more in reproduction, on average, than migrants within species. Estimating juvenile and adult overwinter survival (Sj = 0.32 ± 0.06 and Sa = 0.69 ± 0.05) next allowed us to simulate an expected distribution of population growth rates as λexp = Sa + (Sj × F), given parameter error. Our estimate of λexp (1.61 ± 0.57) implies expeditious population growth, consistent with the species’ recent colonization of the region.
Collapse
Affiliation(s)
- Hannah Visty
- Department of Forest and Conservation Sciences, The University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
| | - Scott Wilson
- Environment and Climate Change Canada, National Wildlife Research Centre, 1125 Colonel by Drive, Ottawa, ON K1A 0H3, Canada
| | - Ryan Germain
- Department of Forest and Conservation Sciences, The University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Institute of Biological and Environmental Sciences, Zoology Building, University of Aberdeen, Tillydrone Avenue, Aberdeen, AB24 2TZ, United Kingdom
| | - Jessica Krippel
- Department of Forest and Conservation Sciences, The University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
| | - Peter Arcese
- Department of Forest and Conservation Sciences, The University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
| |
Collapse
|
27
|
Tarwater CE, Arcese P. Individual fitness and the effects of a changing climate on the cessation and length of the breeding period using a 34-year study of a temperate songbird. GLOBAL CHANGE BIOLOGY 2018; 24:1212-1223. [PMID: 28869682 DOI: 10.1111/gcb.13889] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2017] [Accepted: 08/17/2017] [Indexed: 06/07/2023]
Abstract
Studies of the phenological responses of animals to climate change typically emphasize the initiation of breeding although climatic effects on the cessation and length of the breeding period may be as or more influential of fitness. We quantified links between climate, the cessation and length of the breeding period, and individual survival and reproduction using a 34-year study of a resident song sparrow (Melospiza melodia) population subject to dramatic variation in climate. We show that the cessation and length of the breeding period varied strongly across years, and predicted female annual fecundity but not survival. Breeding period length was more influential of fecundity than initiation or cessation of breeding alone. Warmer annual temperature and drier winters and summers predicted an earlier cessation of breeding. Population density, the date breeding was initiated, a female's history of breeding success, and the number of breeding attempts initiated previously also predicted the cessation of breeding annually, indicating that climatic, population, and individual factors may interact to affect breeding phenology. Linking climate projections to our model results suggests that females will both initiate and cease breeding earlier in the future; this will have opposite effects on individual reproductive rate because breeding earlier is expected to increase fecundity, whereas ceasing breeding earlier should reduce it. Identifying factors affecting the cessation and length of the breeding period in multiparous species may be essential to predicting individual fitness and population demography. Given a rich history of studies on the initiation of breeding in free-living species, re-visiting those data to estimate climatic effects on the cessation and length of breeding should improve our ability to predict the impacts of climate change on multiparous species.
Collapse
Affiliation(s)
- Corey E Tarwater
- Department of Forest and Conservation Sciences, University of British Columbia Vancouver, Vancouver, British Columbia, Canada
| | - Peter Arcese
- Department of Forest and Conservation Sciences, University of British Columbia Vancouver, Vancouver, British Columbia, Canada
| |
Collapse
|
28
|
Morinay J, Forsman JT, Kivelä SM, Gustafsson L, Doligez B. Heterospecific Nest Site Copying Behavior in a Wild Bird: Assessing the Influence of Genetics and Past Experience on a Joint Breeding Phenotype. Front Ecol Evol 2018. [DOI: 10.3389/fevo.2017.00167] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
|
29
|
Bailey NW, Marie-Orleach L, Moore AJ. Indirect genetic effects in behavioral ecology: does behavior play a special role in evolution? Behav Ecol 2017. [DOI: 10.1093/beheco/arx127] [Citation(s) in RCA: 64] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Affiliation(s)
- Nathan W Bailey
- School of Biology, University of St Andrews, St Andrews, Fife, UK
| | | | - Allen J Moore
- Department of Genetics, University of Georgia, Athens, GA USA
- Department of Entomology, University of Georgia, Athens, GA USA
| |
Collapse
|
30
|
Gienapp P, Fior S, Guillaume F, Lasky JR, Sork VL, Csilléry K. Genomic Quantitative Genetics to Study Evolution in the Wild. Trends Ecol Evol 2017; 32:897-908. [PMID: 29050794 DOI: 10.1016/j.tree.2017.09.004] [Citation(s) in RCA: 82] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2017] [Revised: 09/05/2017] [Accepted: 09/08/2017] [Indexed: 11/19/2022]
Abstract
Quantitative genetic theory provides a means of estimating the evolutionary potential of natural populations. However, this approach was previously only feasible in systems where the genetic relatedness between individuals could be inferred from pedigrees or experimental crosses. The genomic revolution opened up the possibility of obtaining the realized proportion of genome shared among individuals in natural populations of virtually any species, which could promise (more) accurate estimates of quantitative genetic parameters in virtually any species. Such a 'genomic' quantitative genetics approach relies on fewer assumptions, offers a greater methodological flexibility, and is thus expected to greatly enhance our understanding of evolution in natural populations, for example, in the context of adaptation to environmental change, eco-evolutionary dynamics, and biodiversity conservation.
Collapse
Affiliation(s)
- Phillip Gienapp
- Department of Animal Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
| | - Simone Fior
- Plant Ecological Genetics, ETH Zurich, Switzerland
| | - Frédéric Guillaume
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Switzerland
| | - Jesse R Lasky
- Department of Biology, Pennsylvania State University, University Park, PA, USA
| | - Victoria L Sork
- Department of Ecology and Evolutionary Biology, University of California Los Angeles, Los Angeles, CA, USA
| | - Katalin Csilléry
- Department of Evolutionary Biology and Environmental Studies, University of Zurich, Switzerland; Biodiversity and Conservation Biology, WSL Swiss Federal Research Institute, Birmensdorf, Switzerland
| |
Collapse
|
31
|
Crombie M, Germain R, Arcese P. Nest-site preference and reproductive performance of Song Sparrows (Melospiza melodia) in historically extant and colonist shrub species. CAN J ZOOL 2017. [DOI: 10.1139/cjz-2016-0189] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Many studies report mixed results on the influence of invasive plants on native animals, partly due to uncertainties about habitat preference and reproductive performance in native animals before and after plant invasion. We used vegetation surveys 20 years apart and 18 years of breeding data from Song Sparrows (Melospiza melodia (A. Wilson, 1810)) to compare nest-site preference and reproductive performance during the colonization of Mandarte Island, British Columbia, by one shrub species native to the region but historically absent from the island (red elderberry, Sambucus racemosa L.) and another species that is exotic to North America (Himalayan blackberry, Rubus armeniacus Focke = Rubus bifrons Vest). Nest-site preference declined where red elderberry increased but was unrelated to change in the cover of Himalayan blackberry. Song Sparrows nested in trailing blackberry (Rubus ursinus Cham. and Schltdl.) and its exotic congener Himalayan blackberry in preference to two common shrubs native to Mandarte Island (Nootka rose, Rosa nutkana C. Presl; snowberry, Symphoricarpos albus (L.) S.F. Blake) and built just 1 of 1051 nests in red elderberry. In contrast, reproductive performance was similar in all shrub species used regularly as nest substrates. Our results show that Song Sparrow nest-site preference and reproductive performance were independent of plant species origin.
Collapse
Affiliation(s)
- M.D. Crombie
- Department of Forest and Conservation Sciences, The University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Department of Forest and Conservation Sciences, The University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
| | - R.R. Germain
- Department of Forest and Conservation Sciences, The University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Department of Forest and Conservation Sciences, The University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
| | - P. Arcese
- Department of Forest and Conservation Sciences, The University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
- Department of Forest and Conservation Sciences, The University of British Columbia, 2424 Main Mall, Vancouver, BC V6T 1Z4, Canada
| |
Collapse
|