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Ben Abdallah M, Chamkha M, Karray F, Sayadi S. Microbial diversity in polyextreme salt flats and their potential applications. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:11371-11405. [PMID: 38180652 DOI: 10.1007/s11356-023-31644-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 12/17/2023] [Indexed: 01/06/2024]
Abstract
Recent geological, hydrochemical, and mineralogical studies performed on hypersaline salt flats have given insights into similar geo-morphologic features on Mars. These salt-encrusted depressions are widely spread across the Earth, where they are characterized by high salt concentrations, intense UV radiation, high evaporation, and low precipitation. Their surfaces are completely dry in summer; intermittent flooding occurs in winter turning them into transitory hypersaline lakes. Thanks to new approaches such as culture-dependent, culture-independent, and metagenomic-based methods, it is important to study microbial life under polyextreme conditions and understand what lives in these dynamic ecosystems and how they function. Regarding these particular features, new halophilic microorganisms have been isolated from some salt flats and identified as excellent producers of primary and secondary metabolites and granules such as halocins, enzymes, carotenoids, polyhydroxyalkanoates, and exopolysaccharides. Additionally, halophilic microorganisms are implemented in heavy metal bioremediation and hypersaline wastewater treatment. As a result, there is a growing interest in the distribution of halophilic microorganisms around the world that can be looked upon as good models to develop sustainable biotechnological processes for all fields. This review provides insights into diversity, ecology, metabolism, and genomics of halophiles in hypersaline salt flats worldwide as well as their potential uses in biotechnology.
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Affiliation(s)
- Manel Ben Abdallah
- Laboratory of Environmental Bioprocesses, Centre of Biotechnology of Sfax, BP 1177, 3018, Sfax, Tunisia.
| | - Mohamed Chamkha
- Laboratory of Environmental Bioprocesses, Centre of Biotechnology of Sfax, BP 1177, 3018, Sfax, Tunisia
| | - Fatma Karray
- Laboratory of Environmental Bioprocesses, Centre of Biotechnology of Sfax, BP 1177, 3018, Sfax, Tunisia
| | - Sami Sayadi
- Biotechnology Program, Center for Sustainable Development, College of Arts and Sciences, Qatar University, 2713, Doha, Qatar
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Xie L, Yu S, Lu X, Liu S, Tang Y, Lu H. Different Responses of Bacteria and Archaea to Environmental Variables in Brines of the Mahai Potash Mine, Qinghai-Tibet Plateau. Microorganisms 2023; 11:2002. [PMID: 37630563 PMCID: PMC10458105 DOI: 10.3390/microorganisms11082002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 07/29/2023] [Accepted: 07/31/2023] [Indexed: 08/27/2023] Open
Abstract
Salt mines feature both autochthonous and allochthonous microbial communities introduced by industrialization. It is important to generate the information on the diversity of the microbial communities present in the salt mines and how they are shaped by the environment representing ecological diversification. Brine from Mahai potash mine (Qianghai, China), an extreme hypersaline environment, is used to produce potash salts for hundreds of millions of people. However, halophiles preserved in this niche during deposition are still unknown. In this study, using high-throughput 16S rRNA gene amplicon sequencing and estimation of physicochemical variables, we examined brine samples collected from locations with the gradient of industrial activity intensity and discrete hydrochemical compositions in the Mahai potash mine. Our findings revealed a highly diverse bacterial community, mainly composed of Pseudomonadota in the hypersaline brines from the industrial area, whereas in the natural brine collected from the upstream Mahai salt lake, most of the 16S rRNA gene reads were assigned to Bacteroidota. Halobacteria and halophilic methanogens dominated archaeal populations. Furthermore, we discovered that in the Mahai potash mining area, bacterial communities tended to respond to anthropogenic influences. In contrast, archaeal diversity and compositions were primarily shaped by the chemical properties of the hypersaline brines. Conspicuously, distinct methanogenic communities were discovered in sets of samples with varying ionic compositions, indicating their strong sensitivity to the brine hydrochemical alterations. Our findings provide the first taxonomic snapshot of microbial communities from the Mahai potash mine and reveal the different responses of bacteria and archaea to environmental variations in this high-altitude aquatic ecosystem.
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Affiliation(s)
- Linglu Xie
- School of Earth and Space Sciences, Peking University, Beijing 100871, China; (L.X.)
| | - Shan Yu
- Beijing International Center for Gas Hydrate, School of Earth and Space Sciences, Peking University, Beijing 100871, China
- National Engineering Research Center for Gas Hydrate Exploration and Development, Guangzhou 511466, China
| | - Xindi Lu
- School of Earth and Space Sciences, Peking University, Beijing 100871, China; (L.X.)
| | - Siwei Liu
- School of Earth and Space Sciences, Peking University, Beijing 100871, China; (L.X.)
| | - Yukai Tang
- School of Earth and Space Sciences, Peking University, Beijing 100871, China; (L.X.)
| | - Hailong Lu
- School of Earth and Space Sciences, Peking University, Beijing 100871, China; (L.X.)
- Beijing International Center for Gas Hydrate, School of Earth and Space Sciences, Peking University, Beijing 100871, China
- National Engineering Research Center for Gas Hydrate Exploration and Development, Guangzhou 511466, China
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Hallsworth JE, Udaondo Z, Pedrós‐Alió C, Höfer J, Benison KC, Lloyd KG, Cordero RJB, de Campos CBL, Yakimov MM, Amils R. Scientific novelty beyond the experiment. Microb Biotechnol 2023; 16:1131-1173. [PMID: 36786388 PMCID: PMC10221578 DOI: 10.1111/1751-7915.14222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 01/09/2023] [Accepted: 01/11/2023] [Indexed: 02/15/2023] Open
Abstract
Practical experiments drive important scientific discoveries in biology, but theory-based research studies also contribute novel-sometimes paradigm-changing-findings. Here, we appraise the roles of theory-based approaches focusing on the experiment-dominated wet-biology research areas of microbial growth and survival, cell physiology, host-pathogen interactions, and competitive or symbiotic interactions. Additional examples relate to analyses of genome-sequence data, climate change and planetary health, habitability, and astrobiology. We assess the importance of thought at each step of the research process; the roles of natural philosophy, and inconsistencies in logic and language, as drivers of scientific progress; the value of thought experiments; the use and limitations of artificial intelligence technologies, including their potential for interdisciplinary and transdisciplinary research; and other instances when theory is the most-direct and most-scientifically robust route to scientific novelty including the development of techniques for practical experimentation or fieldwork. We highlight the intrinsic need for human engagement in scientific innovation, an issue pertinent to the ongoing controversy over papers authored using/authored by artificial intelligence (such as the large language model/chatbot ChatGPT). Other issues discussed are the way in which aspects of language can bias thinking towards the spatial rather than the temporal (and how this biased thinking can lead to skewed scientific terminology); receptivity to research that is non-mainstream; and the importance of theory-based science in education and epistemology. Whereas we briefly highlight classic works (those by Oakes Ames, Francis H.C. Crick and James D. Watson, Charles R. Darwin, Albert Einstein, James E. Lovelock, Lynn Margulis, Gilbert Ryle, Erwin R.J.A. Schrödinger, Alan M. Turing, and others), the focus is on microbiology studies that are more-recent, discussing these in the context of the scientific process and the types of scientific novelty that they represent. These include several studies carried out during the 2020 to 2022 lockdowns of the COVID-19 pandemic when access to research laboratories was disallowed (or limited). We interviewed the authors of some of the featured microbiology-related papers and-although we ourselves are involved in laboratory experiments and practical fieldwork-also drew from our own research experiences showing that such studies can not only produce new scientific findings but can also transcend barriers between disciplines, act counter to scientific reductionism, integrate biological data across different timescales and levels of complexity, and circumvent constraints imposed by practical techniques. In relation to urgent research needs, we believe that climate change and other global challenges may require approaches beyond the experiment.
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Affiliation(s)
- John E. Hallsworth
- Institute for Global Food Security, School of Biological SciencesQueen's University BelfastBelfastUK
| | - Zulema Udaondo
- Department of Biomedical InformaticsUniversity of Arkansas for Medical SciencesLittle RockArkansasUSA
| | - Carlos Pedrós‐Alió
- Department of Systems BiologyCentro Nacional de Biotecnología (CSIC)MadridSpain
| | - Juan Höfer
- Escuela de Ciencias del MarPontificia Universidad Católica de ValparaísoValparaísoChile
| | - Kathleen C. Benison
- Department of Geology and GeographyWest Virginia UniversityMorgantownWest VirginiaUSA
| | - Karen G. Lloyd
- Microbiology DepartmentUniversity of TennesseeKnoxvilleTennesseeUSA
| | - Radamés J. B. Cordero
- Department of Molecular Microbiology and ImmunologyJohns Hopkins Bloomberg School of Public HealthBaltimoreMarylandUSA
| | - Claudia B. L. de Campos
- Institute of Science and TechnologyUniversidade Federal de Sao Paulo (UNIFESP)São José dos CamposSPBrazil
| | | | - Ricardo Amils
- Department of Molecular Biology, Centro de Biología Molecular Severo Ochoa (CSIC‐UAM)Nicolás Cabrera n° 1, Universidad Autónoma de MadridMadridSpain
- Department of Planetology and HabitabilityCentro de Astrobiología (INTA‐CSIC)Torrejón de ArdozSpain
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Kenya E, Kinyanjui G, Kipnyargis A, Kinyua F, Mwangi M, Khamis F, Mwirichia R. Amplicon-based assessment of bacterial diversity and community structure in three tropical forest soils in Kenya. Heliyon 2022; 8:e11577. [PMID: 36411924 PMCID: PMC9674510 DOI: 10.1016/j.heliyon.2022.e11577] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2022] [Revised: 07/14/2022] [Accepted: 11/07/2022] [Indexed: 11/16/2022] Open
Abstract
Forest soils provide a multitude of habitats for diverse communities of bacteria. In this study, we selected three tropical forests in Kenya to determine the diversity and community structure of soil bacteria inhabiting these regions. Kakamega and Irangi are rainforests, whereas Gazi Bay harbors mangrove forests. The three natural forests occupy different altitudinal zones and differ in their environmental characteristics. Soil samples were collected from a total of 12 sites and soil physicochemical parameters for each sampling site were analyzed. We used an amplicon-based Illumina high-throughput sequencing approach. Total community DNA was extracted from individual samples using the phenol-chloroform method. The 16S ribosomal RNA gene segment spanning the V4 region was amplified using the Illumina MiSeq platform. Diversity indices, rarefaction curves, hierarchical clustering, principal component analysis (PCA), and non-metric multidimensional scaling (NMDS) analyses were performed in R software. A total of 13,410 OTUs were observed at 97% sequence similarity. Bacterial communities were dominated by Proteobacteria, Bacteroidetes, Firmicutes, Actinobacteria, and Acidobacteria in both rainforest and mangrove sampling sites. Alpha diversity indices and species richness were higher in Kakamega and Irangi rainforests compared to mangroves in Gazi Bay. The composition of bacterial communities within and between the three forests was also significantly differentiated (R = 0.559, p = 0.007). Clustering in both PCA and NMDS plots showed that each sampling site had a distinct bacterial community profile. The NMDS analysis also indicated that soil EC, sodium, sulfur, magnesium, boron, and manganese contributed significantly to the observed variation in the bacterial community structure. Overall, this study demonstrated the presence of diverse taxa and heterogeneous community structures of soil bacteria inhabiting three tropical forests of Kenya. Our results also indicated that variation in soil chemical parameters was the major driver of the observed bacterial diversity and community structure in these forests.
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Affiliation(s)
- Eucharia Kenya
- Department of Biological Sciences, University of Embu, P. O. Box 6-60100, Embu, Kenya
| | - Grace Kinyanjui
- Department of Biological Sciences, University of Embu, P. O. Box 6-60100, Embu, Kenya
| | - Alex Kipnyargis
- Department of Biological Sciences, University of Embu, P. O. Box 6-60100, Embu, Kenya
| | - Franklin Kinyua
- Department of Biological Sciences, University of Embu, P. O. Box 6-60100, Embu, Kenya
| | - Mary Mwangi
- Department of Biochemistry and Biotechnology, Kenyatta University, P. O. Box 43844-00100, Nairobi, Kenya
| | - Fathiya Khamis
- International Centre of Insect Physiology and Ecology (ICIPE), P. O. Box 30772-00100, Nairobi, Kenya
| | - Romano Mwirichia
- Department of Biological Sciences, University of Embu, P. O. Box 6-60100, Embu, Kenya
- Corresponding author.
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Wu JH, McGenity TJ, Rettberg P, Simões MF, Li WJ, Antunes A. The archaeal class Halobacteria and astrobiology: Knowledge gaps and research opportunities. Front Microbiol 2022; 13:1023625. [PMID: 36312929 PMCID: PMC9608585 DOI: 10.3389/fmicb.2022.1023625] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2022] [Accepted: 09/07/2022] [Indexed: 09/19/2023] Open
Abstract
Water bodies on Mars and the icy moons of the outer solar system are now recognized as likely being associated with high levels of salt. Therefore, the study of high salinity environments and their inhabitants has become increasingly relevant for Astrobiology. Members of the archaeal class Halobacteria are the most successful microbial group living in hypersaline conditions and are recognized as key model organisms for exposure experiments. Despite this, data for the class is uneven across taxa and widely dispersed across the literature, which has made it difficult to properly assess the potential for species of Halobacteria to survive under the polyextreme conditions found beyond Earth. Here we provide an overview of published data on astrobiology-linked exposure experiments performed with members of the Halobacteria, identifying clear knowledge gaps and research opportunities.
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Affiliation(s)
- Jia-Hui Wu
- State Key Laboratory of Lunar and Planetary Sciences, Macau University of Science and Technology (MUST), Taipa, Macau SAR, China
- China National Space Administration (CNSA), Macau Center for Space Exploration and Science, Taipa, Macau SAR, China
| | - Terry J. McGenity
- School of Life Sciences, University of Essex, Colchester, United Kingdom
| | - Petra Rettberg
- German Aerospace Center (DLR), Institute of Aerospace Medicine, Köln, Germany
| | - Marta F. Simões
- State Key Laboratory of Lunar and Planetary Sciences, Macau University of Science and Technology (MUST), Taipa, Macau SAR, China
- China National Space Administration (CNSA), Macau Center for Space Exploration and Science, Taipa, Macau SAR, China
| | - Wen-Jun Li
- State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), School of Life Sciences, Sun Yat-sen University, Guangzhou, China
| | - André Antunes
- State Key Laboratory of Lunar and Planetary Sciences, Macau University of Science and Technology (MUST), Taipa, Macau SAR, China
- China National Space Administration (CNSA), Macau Center for Space Exploration and Science, Taipa, Macau SAR, China
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Li Y, Yuan H, Cao L, Liu L, Yu H, Gao J, Zhang Y. Performance enhancement and population structure of denitrifying phosphorus removal system over redox mediator at low temperature. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2022; 319:115748. [PMID: 35842988 DOI: 10.1016/j.jenvman.2022.115748] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 06/21/2022] [Accepted: 07/10/2022] [Indexed: 06/15/2023]
Abstract
The development of denitrifying polyphosphate accumulating organisms (DPAOs) presents a strategy to carbon competition between denitrifying bacteria and phosphorus removing bacteria. However, low temperature inhibits the rate of enzyme-catalyzed and substrate diffusion during denitrifying phosphorus removal (DPR). Therefore, the present study assessed the addition of NQS (100 μmol/L) for enhancing the removal of TP and TN in DPR reactors operated at alternating anaerobic and anoxic phases and different influent phosphate concentrations. The results showed that the removal efficiency of TP and TN in NQS-DPR system at 10 °C were 99.9% and 42.0%, respectively, which were 2.1 and 2.0 times higher than that of DPR system. Adding NQS significantly alleviated the increase of pH under anoxic condition and decreased the ORP value of the reactor, which in turn enhanced the PHAs accumulation process. The determination of functional genes (nirK, narG and phoD) showed that Dechloromonas, Lentimicrobium, and Terrimonas were the dominant functional bacteria in NQS-DPR system at 10 °C with the relative abundance of 3.09%, 2.99% and 2.28%, respectively. This study can provide valuable information for the effects of the addition of the redox mediator on denitrifying phosphorus removal technology.
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Affiliation(s)
- Yuanling Li
- Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin, 300384, China; College of Environmental Science and Engineering, Nankai University, Tianjin, 300071, China
| | - Hongying Yuan
- Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin, 300384, China.
| | - Lei Cao
- Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin, 300384, China; State Key Laboratory of Separation Membranes and Membrane Processes, Tiangong University, Tianjin, 300387, China.
| | - Lina Liu
- College of Environmental Science and Engineering, Nankai University, Tianjin, 300071, China
| | - Hongbing Yu
- College of Environmental Science and Engineering, Nankai University, Tianjin, 300071, China
| | - Jie Gao
- Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin, 300384, China
| | - Yufeng Zhang
- Tianjin Key Laboratory of Aquatic Science and Technology, Tianjin Chengjian University, Tianjin, 300384, China
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Santos AMD, Costa JM, Braga JK, Flynn TM, Brucha G, Sancinetti GP, Rodriguez RP. Lactate as an effective electron donor in the sulfate reduction: impacts on the microbial diversity. ENVIRONMENTAL TECHNOLOGY 2022; 43:3149-3160. [PMID: 33840369 DOI: 10.1080/09593330.2021.1916092] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2021] [Accepted: 04/05/2021] [Indexed: 06/12/2023]
Abstract
The competition between sulfate-reducing bacteria and methane-producing archaea has a major influence on organic matter removal, as well as the success of sulfidogenic systems. This study investigated the performance of six batch sulfidogenic reactors in response to different COD/sulfate ratios (1.0 and 2.0) and electron donors (cheese whey, ethanol, and sodium lactate) by evaluating the biochemical mechanisms of sulfate reduction, organic matter oxidation, and microbial structure modification. A COD/sulfate ratio of 1.0 resulted in high sulfidogenic activity for all electron donors, thereby achieving a nearly 80% sulfate removal. Lactate provided high sulfate removal rates at COD/sulfate ratios of 1.0 (80%) and 2.0 (90%). A COD/sulfate ratio of 2.0 decreased the sulfate removal rates by 25 and 28% when ethanol and cheese whey were used as substrates. The sulfate-reducing bacteria populations increased using ethanol and lactate at a COD/sulfate ratio of 1.0. Particularly, Desulfovibrio, Clostridium, and Syntrophobacter were predominant. Influent composition and COD/sulfate ratio influenced the relative abundance of the microbial communities. Therefore, controlling these parameters may facilitate the wastewater treatment with high sulfate levels through bacterial activity.
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Affiliation(s)
- Angélica Marcia Dos Santos
- Fundação Getúlio Vargas (FGV-Energia), Rio de Janeiro, Brazil
- Federal University of Catalão (UFCAT), Catalão, Brazil
- Laboratory of Anaerobic Biotechnology - Science and Technology Institute, Federal University of Alfenas (UNIFAL-MG), Poços de Caldas, Brazil
| | | | - Juliana Kawanishi Braga
- Laboratory of Anaerobic Biotechnology - Science and Technology Institute, Federal University of Alfenas (UNIFAL-MG), Poços de Caldas, Brazil
| | - Theodore M Flynn
- California Department of Water Resources, West Sacramento, CA, USA
| | - Gunther Brucha
- Laboratory of Anaerobic Biotechnology - Science and Technology Institute, Federal University of Alfenas (UNIFAL-MG), Poços de Caldas, Brazil
| | - Giselle Patricia Sancinetti
- Laboratory of Anaerobic Biotechnology - Science and Technology Institute, Federal University of Alfenas (UNIFAL-MG), Poços de Caldas, Brazil
| | - Renata Piacentini Rodriguez
- Laboratory of Anaerobic Biotechnology - Science and Technology Institute, Federal University of Alfenas (UNIFAL-MG), Poços de Caldas, Brazil
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Solchaga JI, Busalmen JP, Nercessian D. Unraveling Anaerobic Metabolisms in a Hypersaline Sediment. Front Microbiol 2022; 13:811432. [PMID: 35369499 PMCID: PMC8966722 DOI: 10.3389/fmicb.2022.811432] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2021] [Accepted: 01/31/2022] [Indexed: 11/13/2022] Open
Abstract
The knowledge on the microbial diversity inhabiting hypersaline sediments is still limited. In particular, existing data about anaerobic hypersaline archaea and bacteria are scarce and refer to a limited number of genera. The approach to obtain existing information has been almost exclusively attempting to grow every organism in axenic culture on the selected electron acceptor with a variety of electron donors. Here, a different approach has been used to interrogate the microbial community of submerged hypersaline sediment of Salitral Negro, Argentina, aiming at enriching consortia performing anaerobic respiration of different electron acceptor compounds, in which ecological associations can maximize the possibilities of successful growth. Growth of consortia was demonstrated on all offered electron acceptors, including fumarate, nitrate, sulfate, thiosulfate, dimethyl sulfoxide, and a polarized electrode. Halorubrum and Haloarcula representatives are here shown for the first time growing on lactate, using fumarate or a polarized electrode as the electron acceptor; in addition, they are shown also growing in sulfate-reducing consortia. Halorubrum representatives are for the first time shown to be growing in nitrate-reducing consortia, probably thanks to reduction of N2O produced by other consortium members. Fumarate respiration is indeed shown for the first time supporting growth of Halanaeroarchaeum and Halorhabdus belonging to the archaea, as well as growth of Halanaerobium, Halanaerobaculum, Sporohalobacter, and Acetohalobium belonging to the bacteria. Finally, evidence is presented suggesting growth of nanohaloarchaea in anaerobic conditions.
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Affiliation(s)
- Juan Ignacio Solchaga
- Instituto de Investigaciones Biológicas, Universidad Nacional de Mar del Plata - CONICET, Mar del Plata, Argentina
| | - Juan Pablo Busalmen
- Laboratorio de Bioelectroquímica, INTEMA - CONICET, Universidad Nacional de Mar del Plata, Mar del Plata, Argentina
| | - Débora Nercessian
- Instituto de Investigaciones Biológicas, Universidad Nacional de Mar del Plata - CONICET, Mar del Plata, Argentina
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Wang Q, He J. Partnering of anammox and denitrifying bacteria benefits anammox's recovery from starvation and complete nitrogen removal. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 815:152696. [PMID: 34974008 DOI: 10.1016/j.scitotenv.2021.152696] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Revised: 12/19/2021] [Accepted: 12/22/2021] [Indexed: 06/14/2023]
Abstract
The cooperative metabolic activity of anammox and denitrifying bacteria could speed up anammox's recovery and reduce nitrate generated from the anammox reaction. In this study, a laboratory-scale model system containing a defined anammox culture AMX and a simultaneous nitrification and denitrification (SND) bacterium - Thauera sp. strain SND5 was established and investigated. Several lines of evidence revealed that strain SND5 consumed soluble microbial products (SMPs) generated by culture AMX (as high as 1.5 mg/L), stimulating anammox activity after long-term starvation. At low C/N ratios with an optimal C/N of 1, SND5 completely consumed organic carbon first at anoxic condition, storing carbon intracellularly as poly-β-hydroxybutyrate (PHB) (as high as 0.6 mg/L biomass), thereby creating a favorable environment for the growth of anammox bacteria. The anammox reaction and nitrate reduction supported by PHB catabolism could then proceed simultaneously, resulting in enhanced nitrogen removal. Cooperative interactions between anammox and denitrifying bacteria involving SMPs consumption and PHB synthesis may play a significant role in nitrogen cycling at nitrite- and carbon-limited environments.
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Affiliation(s)
- Qingkun Wang
- Department of Civil and Environmental Engineering, National University of Singapore, Singapore 117576, Singapore
| | - Jianzhong He
- Department of Civil and Environmental Engineering, National University of Singapore, Singapore 117576, Singapore.
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Bruna N, Galliani E, Oyarzún P, Bravo D, Fuentes F, Pérez-Donoso JM. Biomineralization of lithium nanoparticles by Li-resistant Pseudomonas rodhesiae isolated from the Atacama salt flat. Biol Res 2022; 55:12. [PMID: 35296351 PMCID: PMC8925236 DOI: 10.1186/s40659-022-00382-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Accepted: 03/01/2022] [Indexed: 11/23/2022] Open
Abstract
Background The Atacama salt flat is located in northern Chile, at 2300 m above sea level, and has a high concentration of lithium, being one of the main extraction sites in the world. The effect of lithium on microorganism communities inhabiting environments with high concentrations of this metal has been scarcely studied. A few works have studied the microorganisms present in lithium-rich salt flats (Uyuni and Hombre Muerto in Bolivia and Argentina, respectively). Nanocrystals formation through biological mineralization has been described as an alternative for microorganisms living in metal-rich environments to cope with metal ions. However, bacterial lithium biomineralization of lithium nanostructures has not been published to date. In the present work, we studied lithium-rich soils of the Atacama salt flat and reported for the first time the biological synthesis of Li nanoparticles. Results Bacterial communities were evaluated and a high abundance of Cellulomonas, Arcticibacter, Mucilaginibacter, and Pseudomonas were determined. Three lithium resistant strains corresponding to Pseudomonas rodhesiae, Planomicrobium koreense, and Pseudomonas sp. were isolated (MIC > 700 mM). High levels of S2− were detected in the headspace of P. rodhesiae and Pseudomonas sp. cultures exposed to cysteine. Accordingly, biomineralization of lithium sulfide-containing nanomaterials was determined in P. rodhesiae exposed to lithium salts and cysteine. Transmission electron microscopy (TEM) analysis of ultrathin sections of P. rodhesiae cells biomineralizing lithium revealed the presence of nanometric materials. Lithium sulfide-containing nanomaterials were purified, and their size and shape determined by dynamic light scattering and TEM. Spherical nanoparticles with an average size < 40 nm and a hydrodynamic size ~ 44.62 nm were determined. Conclusions We characterized the bacterial communities inhabiting Li-rich extreme environments and reported for the first time the biomineralization of Li-containing nanomaterials by Li-resistant bacteria. The biosynthesis method described in this report could be used to recover lithium from waste batteries and thus provide a solution to the accumulation of batteries. Supplementary Information The online version contains supplementary material available at 10.1186/s40659-022-00382-6.
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Affiliation(s)
- N Bruna
- BioNanotechnology and Microbiology Laboratory, Center for Bioinformatics and Integrative Biology (CBIB), Facultad de Ciencias de la Vida, Av. República # 330, Santiago, Chile
| | - E Galliani
- BioNanotechnology and Microbiology Laboratory, Center for Bioinformatics and Integrative Biology (CBIB), Facultad de Ciencias de la Vida, Av. República # 330, Santiago, Chile
| | - P Oyarzún
- Laboratorio de Análisis de Sólidos, Departamento de Ciencias Químicas, Facultad de Ciencias Exactas, Universidad Andrés Bello, Santiago, Chile
| | - D Bravo
- Laboratorio de Microbiología Oral, Facultad de Odontología, Universidad de Chile, Santiago, Chile
| | - F Fuentes
- Escuela de Geología, Facultad de Ciencias, Universidad Mayor, Av. Manuel Montt 367, Santiago, Chile
| | - J M Pérez-Donoso
- BioNanotechnology and Microbiology Laboratory, Center for Bioinformatics and Integrative Biology (CBIB), Facultad de Ciencias de la Vida, Av. República # 330, Santiago, Chile.
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11
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Huang L, Xie T, Wang Y, Tan S, Lu Z, Wang L, Mo C. Symbiotic treatment of ammonia-nitrogen wastewater by algae and activated sludge: effects of algae and sludge inoculation rates. ENVIRONMENTAL TECHNOLOGY 2022:1-11. [PMID: 35184701 DOI: 10.1080/09593330.2022.2044919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Accepted: 02/11/2022] [Indexed: 06/14/2023]
Abstract
A symbiotic microalgal-bacterial system may be an optional technology for wastewater treatment. It was composed of microalgae and activated sludge and established in the SBR to explore the effect of different dosing ratios of algae and sludge on the removal of nitrogen and phosphorus from simulated wastewater containing ammonium. It can be seen from the result that varied algae-sludge dosing ratios had a higher removal effect on COD removal, but the difference was not significant. The algal-bacterial symbiosis system had a 100% removal rate for ammonium removal on the 8th day. Relatively speaking, the removal of nutrients and related mechanisms vary with environmental conditions (inoculation rate). In general, when the additive ratio was 5:1 (algae: AS), the removal rate of TN and TP was the highest, reaching 53.85% and 85.13% in the shortest time (14 days), among them, the removal rate of ammonium and COD was 100%, and the reduction rates of Nitrite nitrogen and Nitrate nitrogen were 362.99% and 73.42%, respectively. In addition, 16S rDNA gene analysis results demonstrated that the microbial community in the reactor with algal sludge inoculation ratio of 5:1 had differences in three stages of the initial reaction, the middle reaction and the end of the reaction. Comamonadaceae, Flavobacterium, Paenarthrobacter, Mesorhizobium, Nitrobacter were enriched during the reaction operation.
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Affiliation(s)
- Lizhen Huang
- School of Resources, Environment and Materials Guangxi University, Nanning, the People's Republic of China
| | - Ting Xie
- School of Materials and Environment, Guangxi Key Laboratory of Chemistry and Engineering of Forest Products, Guangxi University for Nationalities, Nanning, the People's Republic of China
| | - Yilin Wang
- School of Resources, Environment and Materials Guangxi University, Nanning, the People's Republic of China
| | - Shun Tan
- School of Resources, Environment and Materials Guangxi University, Nanning, the People's Republic of China
| | - Zuyi Lu
- School of Resources, Environment and Materials Guangxi University, Nanning, the People's Republic of China
| | - Lujie Wang
- School of Resources, Environment and Materials Guangxi University, Nanning, the People's Republic of China
| | - Chuangrong Mo
- School of Resources, Environment and Materials Guangxi University, Nanning, the People's Republic of China
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12
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Abstract
Water is the cellular milieu, drives all biochemistry within Earth's biosphere and facilitates microbe-mediated decay processes. Instead of reviewing these topics, the current article focuses on the activities of water as a preservative-its capacity to maintain the long-term integrity and viability of microbial cells-and identifies the mechanisms by which this occurs. Water provides for, and maintains, cellular structures; buffers against thermodynamic extremes, at various scales; can mitigate events that are traumatic to the cell membrane, such as desiccation-rehydration, freeze-thawing and thermal shock; prevents microbial dehydration that can otherwise exacerbate oxidative damage; mitigates against biocidal factors (in some circumstances reducing ultraviolet radiation and diluting solute stressors or toxic substances); and is effective at electrostatic screening so prevents damage to the cell by the intense electrostatic fields of some ions. In addition, the water retained in desiccated cells (historically referred to as 'bound' water) plays key roles in biomacromolecular structures and their interactions even for fully hydrated cells. Assuming that the components of the cell membrane are chemically stable or at least repairable, and the environment is fairly constant, water molecules can apparently maintain membrane geometries over very long periods provided these configurations represent thermodynamically stable states. The spores and vegetative cells of many microbes survive longer in the presence of vapour-phase water (at moderate-to-high relative humidities) than under more-arid conditions. There are several mechanisms by which large bodies of water, when cooled during subzero weather conditions remain in a liquid state thus preventing potentially dangerous (freeze-thaw) transitions for their microbiome. Microbial life can be preserved in pure water, freshwater systems, seawater, brines, ice/permafrost, sugar-rich aqueous milieux and vapour-phase water according to laboratory-based studies carried out over periods of years to decades and some natural environments that have yielded cells that are apparently thousands, or even (for hypersaline fluid inclusions of mineralized NaCl) hundreds of millions, of years old. The term preservative has often been restricted to those substances used to extend the shelf life of foods (e.g. sodium benzoate, nitrites and sulphites) or those used to conserve dead organisms, such as ethanol or formaldehyde. For living microorganisms however, the ultimate preservative may actually be water. Implications of this role are discussed with reference to the ecology of halophiles, human pathogens and other microbes; food science; biotechnology; biosignatures for life and other aspects of astrobiology; and the large-scale release/reactivation of preserved microbes caused by global climate change.
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Affiliation(s)
- John E. Hallsworth
- Institute for Global Food SecuritySchool of Biological SciencesQueen’s University Belfast19 Chlorine GardensBelfastBT9 5DLUK
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13
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Vignale FA, Lencina AI, Stepanenko TM, Soria MN, Saona LA, Kurth D, Guzmán D, Foster JS, Poiré DG, Villafañe PG, Albarracín VH, Contreras M, Farías ME. Lithifying and Non-Lithifying Microbial Ecosystems in the Wetlands and Salt Flats of the Central Andes. MICROBIAL ECOLOGY 2022; 83:1-17. [PMID: 33730193 DOI: 10.1007/s00248-021-01725-8] [Citation(s) in RCA: 11] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 02/22/2021] [Indexed: 06/12/2023]
Abstract
The wetlands and salt flats of the Central Andes region are unique extreme environments as they are located in high-altitude saline deserts, largely influenced by volcanic activity. Environmental factors, such as ultraviolet (UV) radiation, arsenic content, high salinity, low dissolved oxygen content, extreme daily temperature fluctuation, and oligotrophic conditions, resemble the early Earth and potentially extraterrestrial conditions. The discovery of modern microbialites and microbial mats in the Central Andes during the past decade has increased the interest in this area as an early Earth analog. In this work, we review the current state of knowledge of Central Andes region environments found within lakes, small ponds or puquios, and salt flats of Argentina, Chile, and Bolivia, many of them harboring a diverse range of microbial communities that we have termed Andean Microbial Ecosystems (AMEs). We have integrated the data recovered from all the known AMEs and compared their biogeochemistry and microbial diversity to achieve a better understanding of them and, consequently, facilitate their protection.
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Affiliation(s)
- Federico A Vignale
- Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CCT-CONICET, San Miguel de Tucumán, Tucumán, Argentina
- Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales (IQUIBICEN)-CONICET, Universidad de Buenos Aires (UBA), Buenos Aires, Argentina
| | - Agustina I Lencina
- Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CCT-CONICET, San Miguel de Tucumán, Tucumán, Argentina
| | - Tatiana M Stepanenko
- Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CCT-CONICET, San Miguel de Tucumán, Tucumán, Argentina
| | - Mariana N Soria
- Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CCT-CONICET, San Miguel de Tucumán, Tucumán, Argentina
| | - Luis A Saona
- Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CCT-CONICET, San Miguel de Tucumán, Tucumán, Argentina
| | - Daniel Kurth
- Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CCT-CONICET, San Miguel de Tucumán, Tucumán, Argentina
| | - Daniel Guzmán
- Centro de Biotecnología (CBT), Facultad de Ciencias y Tecnología, Universidad Mayor de San Simón (UMSS), Cochabamba, Bolivia
| | - Jamie S Foster
- Space Life Science Lab, Department of Microbiology and Cell Science, University of Florida, Merritt Island, FL, USA
| | - Daniel G Poiré
- Centro de Investigaciones Geológicas (CIG), Universidad Nacional de La Plata (UNLP)-CONICET, La Plata, Argentina
| | - Patricio G Villafañe
- Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CCT-CONICET, San Miguel de Tucumán, Tucumán, Argentina
| | - Virginia H Albarracín
- Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CCT-CONICET, San Miguel de Tucumán, Tucumán, Argentina
- Centro Integral de Microscopía Electrónica (CIME)-CCT-CONICET, Universidad Nacional de Tucumán (UNT), Tucumán, Argentina
| | | | - María E Farías
- Laboratorio de Investigaciones Microbiológicas de Lagunas Andinas (LIMLA), Planta Piloto de Procesos Industriales Microbiológicos (PROIMI)-CCT-CONICET, San Miguel de Tucumán, Tucumán, Argentina.
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14
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Benison KC, O'Neill WK, Blain D, Hallsworth JE. Water Activities of Acid Brine Lakes Approach the Limit for Life. ASTROBIOLOGY 2021; 21:729-740. [PMID: 33819431 PMCID: PMC8219186 DOI: 10.1089/ast.2020.2334] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2020] [Accepted: 02/09/2021] [Indexed: 05/19/2023]
Abstract
Water activity is an important characteristic for describing unusual waters and is a determinant of habitability for microorganisms. However, few empirical studies of water activity have been done for natural waters exhibiting an extreme chemistry. Here, we investigate water activity for acid brines from Western Australia and Chile with pH as low as 1.4, salinities as high as 32% total dissolved solids, and complex chemical compositions. These acid brines host diverse communities of extremophilic microorganisms, including archaea, bacteria, algae, and fungi, according to metagenomic analyses. For the most extreme brine, its water activity (0.714) was considerably lower than that of saturated (pure) NaCl brine. This study provides a thermodynamic insight into life within end-member natural waters that lie at, or possibly beyond, the very edge of habitable space on Earth.
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Affiliation(s)
- Kathleen C. Benison
- Department of Geology and Geography, West Virginia University, Morgantown, West Virginia, USA
| | - William K. O'Neill
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, Belfast, Northern Ireland
| | - David Blain
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, Belfast, Northern Ireland
| | - John E. Hallsworth
- Institute for Global Food Security, School of Biological Sciences, Queen's University Belfast, Belfast, Northern Ireland
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15
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Liu H, Kong T, Qiu L, Xu R, Li F, Kolton M, Lin H, Zhang L, Lin L, Chen J, Sun X, Gao P, Sun W. Solar-driven, self-sustainable electrolysis for treating eutrophic river water: Intensified nutrient removal and reshaped microbial communities. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021; 764:144293. [PMID: 33385655 DOI: 10.1016/j.scitotenv.2020.144293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/13/2020] [Revised: 11/15/2020] [Accepted: 11/30/2020] [Indexed: 06/12/2023]
Abstract
River ecosystems are the most important resource of surface freshwater, but they have frequently been contaminated by excessive nutrient input of nitrogen (N) and phosphorus (P) in particular. An efficient and economic river water treatment technology that possesses the capacity of simultaneous N and P removal is urgently required. In this study, a solar-driven, self-sustainable electrolytic treatment was conducted in situ to intensify N and P removal from eutrophic river water. Solar panel was applied to provide the electrolysis setups with energy (voltage 10 ± 0.5 V), and the current density was controlled to be 0.06 ± 0.02 mA cm-2. Results indicated that the average removal efficiencies of total N (TN) and total P (TP) under electrolysis conditions reached 72.4 ± 11.7 and 13.8 ± 5.3 mg m-2 d-1, which were 3.7- and 4.7-fold higher compared to untreated conditions. Enhanced TN removal mainly reflected the abatement of nitrate N (NO3--N) (80.6 ± 4.1%). The formation of ferric ions through the electro-dissolution of the sacrificial iron anode improved TP removal by coprecipitation with SPS. Combined high-throughput sequencing and statistical analyses revealed that electrolysis significantly reshaped the microbial communities in both the sediment-water interface and suspended sediment (SPS), and hydrogenotrophic denitrifiers (e.g., Hydrogenophaga) were highly enriched under electrolysis conditions. These findings indicated that in situ electrolysis is a feasible and effective technology for intensified nutrient removal from river water.
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Affiliation(s)
- Huaqing Liu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Tianle Kong
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Lang Qiu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Rui Xu
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Fangbai Li
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Max Kolton
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Hanzhi Lin
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Lei Zhang
- Research Institute of Petrochemical and Fine Chemical Engineering, Guangzhou 510665, PR China
| | - Lan Lin
- Research Institute of Petrochemical and Fine Chemical Engineering, Guangzhou 510665, PR China
| | - Jiazhi Chen
- Research Institute of Petrochemical and Fine Chemical Engineering, Guangzhou 510665, PR China
| | - Xiaoxu Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Pin Gao
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Weimin Sun
- National-Regional Joint Engineering Research Center for Soil Pollution Control and Remediation in South China, Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China.
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16
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Martínez JM, Escudero C, Rodríguez N, Rubin S, Amils R. Subsurface and surface halophile communities of the chaotropic Salar de Uyuni. Environ Microbiol 2021; 23:3987-4001. [PMID: 33511754 DOI: 10.1111/1462-2920.15411] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 01/24/2021] [Accepted: 01/25/2021] [Indexed: 01/04/2023]
Abstract
Salar de Uyuni (SdU) is the biggest athalosaline environment on Earth, holding a high percentage of the known world Li reserves. Due to its hypersalinity, temperature and humidity fluctuations, high exposure to UV radiation, and its elevated concentration of chaotropic agents like MgCl2 , LiCl and NaBr, SdU is considered a polyextreme environment. Here, we report the prokaryotic abundance and diversity of 46 samples obtained in different seasons and geographical areas. The identified bacterial community was found to be more heterogeneous than the archaeal community, with both communities varying geographically. A seasonal difference has been detected for archaea. Salinibacter, Halonotius and Halorubrum were the most abundant genera in Salar de Uyuni. Different unclassified archaea were also detected. In addition, the diversity of two subsurface samples obtained at 20 and 80 m depth was evaluated and compared with the surface data, generating an evolutionary record of a multilayer hypersaline ecosystem.
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Affiliation(s)
- José M Martínez
- Centro de Biología Molecular Severo Ochoa, Universidad Autónoma de Madrid (CBMSO, CSIC-UAM), Cantoblanco, Madrid, 28049, Spain
| | - Cristina Escudero
- Centro de Astrobiología (CAB, INTA-CSIC), Torrejón de Ardoz, 28055, Spain
| | - Nuria Rodríguez
- Centro de Astrobiología (CAB, INTA-CSIC), Torrejón de Ardoz, 28055, Spain
| | - Sergio Rubin
- Université Catholique de Louvain, Earth and Life Institute, Georges Lamaitre Center for Earth and Climate Research, Gante, Belgium.,Centro Nacional de Investigaciones Biotecnológicas, CNIB, Cochabamba, Bolivia
| | - Ricardo Amils
- Centro de Biología Molecular Severo Ochoa, Universidad Autónoma de Madrid (CBMSO, CSIC-UAM), Cantoblanco, Madrid, 28049, Spain.,Centro de Astrobiología (CAB, INTA-CSIC), Torrejón de Ardoz, 28055, Spain
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17
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Çınar S, Mutlu MB. Prokaryotic Community Compositions of the Hypersaline Sediments of Tuz Lake Demonstrated by Cloning and High-Throughput Sequencing. Microbiology (Reading) 2020. [DOI: 10.1134/s0026261720060028] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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18
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Zhu XL, Bai YH, Wu J, Xu LZJ, Cheng YF, Fan NS, Jin RC. Whether glycine betaine improves the thermotolerance of mesophilic anammox consortia. ENVIRONMENTAL TECHNOLOGY 2020; 41:3309-3317. [PMID: 30999824 DOI: 10.1080/09593330.2019.1606856] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2019] [Accepted: 04/06/2019] [Indexed: 06/09/2023]
Abstract
While the application of mesophilic anammox process is currently the state of the art, the feasibility of a thermophilic anammox bioprocess is still unclear. In this study, we investigate whether glycine betaine (GB) addition can enhance the thermotolerance of mesophilic anammox biomass in the upflow anaerobic sludge blanket (UASB) reactors fed with synthetic wastewater at a nitrogen loading of approximately 4 kg N m-3 d-1. The results showed that during a long-term operation at 45°C with GB (0, 0.1, 1, 2 mM) addition, anammox performance became worse with the final effluent concentrations of NO2 -N of 145 ± 11.6 mg L-1 and nitrogen removal efficiency decreased from 92.3-6.9%. Specific anammox activity decreased from 392.1 ± 12.1-6.0 ± 0.8 mg N g-1 VSS d-1, which were not significantly higher than those in the control reactor. The content of heme c showed a stronger downward trend in T1 (with GB addition) than in the control reactor T0. The qPCR results showed that the relative abundance of Candidatus Kuenenia decreased in both the experimental (from 53.5-28.8%) and control reactors (from 54.1-35.1%). Overall, continuous addition of exogenous GB did not improve the thermotolerance of mesophilic anammox consortia at 45°C.
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Affiliation(s)
- Xiao-Ling Zhu
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, People's Republic of China
- Key Laboratory of Hangzhou City for Ecosystem Protection and Restoration, Hangzhou Normal University, Hangzhou, People's Republic of China
| | - Yu-Hui Bai
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, People's Republic of China
- Key Laboratory of Hangzhou City for Ecosystem Protection and Restoration, Hangzhou Normal University, Hangzhou, People's Republic of China
| | - Jing Wu
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, People's Republic of China
- Key Laboratory of Hangzhou City for Ecosystem Protection and Restoration, Hangzhou Normal University, Hangzhou, People's Republic of China
| | - Lian-Zeng-Ji Xu
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, People's Republic of China
- Key Laboratory of Hangzhou City for Ecosystem Protection and Restoration, Hangzhou Normal University, Hangzhou, People's Republic of China
| | - Ya-Fei Cheng
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, People's Republic of China
- Key Laboratory of Hangzhou City for Ecosystem Protection and Restoration, Hangzhou Normal University, Hangzhou, People's Republic of China
| | - Nian-Si Fan
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, People's Republic of China
- Key Laboratory of Hangzhou City for Ecosystem Protection and Restoration, Hangzhou Normal University, Hangzhou, People's Republic of China
| | - Ren-Cun Jin
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou, People's Republic of China
- Key Laboratory of Hangzhou City for Ecosystem Protection and Restoration, Hangzhou Normal University, Hangzhou, People's Republic of China
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19
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Li J, Peng Z, Hu R, Gao K, Shen C, Liu S, Liu R. Micro-graphite particles accelerate denitrification in biological treatment systems. BIORESOURCE TECHNOLOGY 2020; 308:122935. [PMID: 32247947 DOI: 10.1016/j.biortech.2020.122935] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Revised: 01/27/2020] [Accepted: 01/29/2020] [Indexed: 06/11/2023]
Abstract
Accelerated denitrification is an essential problem in the biological treatment of nitrogenous wastewater. In this study, we report that denitrification is accelerated by micro-graphite particles (MGPs). The denitrification rate was increased by 83.4% or 11.1% in synthetic (with 0.16 g/L MGPs) or industrial nitrogenous wastewater (with 0.12 g/L MGP), respectively. The mechanism was revealed via a quantitative polymerase chain reaction (q-PCR), high-throughput sequencing, and scanning electron microscopy (SEM). The abundance of denitrifying bacteria Paracoccus in the sludge was increased by micro-graphite particles. The number of denitrifying bacteria with the nirS gene was increased significantly (75.6%). To the best of our knowledge, this is the first report that MGP could enhance denitrification via the sludge. MGP can denitrify in industrial applications.
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Affiliation(s)
- Junzhang Li
- College of Chemistry and Pharmaceutical Engineering, Hebei University of Science and Technology, Shijiazhuang 050018, PR China
| | - Zhaozhou Peng
- College of Chemistry and Pharmaceutical Engineering, Hebei University of Science and Technology, Shijiazhuang 050018, PR China
| | - Ruiyang Hu
- College of Chemistry and Pharmaceutical Engineering, Hebei University of Science and Technology, Shijiazhuang 050018, PR China
| | - Kaiyuan Gao
- College of Chemistry and Pharmaceutical Engineering, Hebei University of Science and Technology, Shijiazhuang 050018, PR China
| | - Chen Shen
- College of Chemistry and Pharmaceutical Engineering, Hebei University of Science and Technology, Shijiazhuang 050018, PR China
| | - Shouxin Liu
- College of Chemistry and Pharmaceutical Engineering, Hebei University of Science and Technology, Shijiazhuang 050018, PR China.
| | - Runjing Liu
- College of Chemistry and Pharmaceutical Engineering, Hebei University of Science and Technology, Shijiazhuang 050018, PR China
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20
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16S rRNA Gene Diversity in the Salt Crust of Salar de Uyuni, Bolivia, the World's Largest Salt Flat. Microbiol Resour Announc 2020; 9:9/21/e00374-20. [PMID: 32439670 PMCID: PMC7242672 DOI: 10.1128/mra.00374-20] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Salar de Uyuni is a vast, high-altitude salt flat in Bolivia with extreme physico-geochemical properties approaching multiple limits of life. Evidence for diverse halophilic bacteria and archaea was found in its surface and near-surface salt crust using 16S amplicon analysis, providing a snapshot of prokaryotic life. Salar de Uyuni is a vast, high-altitude salt flat in Bolivia with extreme physico-geochemical properties approaching multiple limits of life. Evidence for diverse halophilic bacteria and archaea was found in its surface and near-surface salt crust using 16S amplicon analysis, providing a snapshot of prokaryotic life.
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21
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Zhang X, Wang X, Feng W, Li X, Lu H. Investigating COD and Nitrate-Nitrogen Flow and Distribution Variations in the MUCT Process Using ORP as a Control Parameter. ACS OMEGA 2020; 5:4576-4587. [PMID: 32175504 PMCID: PMC7066563 DOI: 10.1021/acsomega.9b04016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Accepted: 02/20/2020] [Indexed: 06/10/2023]
Abstract
This study aimed to reveal the flow and distribution lows of chemical oxygen demand (COD) and nitrate-nitrogen under different main anoxic stage oxidation-reduction potential (ORPan) conditions based on the analysis of material balance in each reaction stage of the modified university of cape town (MUCT) process, combined with the biochemical reaction principles of activated sludge. The rule of the carbon source saving effect was also clarified. The study adopted the programmable logic controller automatic control system and the feedback control structure using the inner circulation flow of nitrate as the controlled variable. The ORPan setting values of control parameters were -140, -125, -110, -95, -70, and -60 mV, respectively. The results showed that when the ORPan setting value was -95 mV, COD distribution ratios of phosphorus-accumulating bacteria reached the highest in the anaerobic stage and preanoxic stage, with the values of 51.74 and 7.70%, respectively. The COD was distributed between heterotrophic bacteria and denitrifying bacteria in the main anoxic stage, and the distribution ratios were 4.40 and 7.19%, respectively, when the ORPan setting value was -95 mV. The study also showed the distribution of nitrate-nitrogen between denitrifying bacteria and denitrifying phosphorus-accumulating bacteria in the main anoxic stage, and when ORPan increased from -140 to -60 mV, the distribution ratios of denitrifying phosphate-accumulating bacteria increased from 76.46 to 86.32%. When there was no denitrification and phosphorus absorption, the acetic acid dosage increased from 20.33 g/d at -140 mV to 24.76 g/d at -95 mV, and the carbon source saving rate increased from 23.19 to 26.56% under similar conditions. Therefore, in the MUCT process, the regulation of ORPan changed the material flow direction and mass quality distribution of COD and nitrate nitrogen. When ORPan set value was -95 mV, COD and nitrate-nitrogen got the best distribution and the carbon source saving effect was the most significant.
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Affiliation(s)
- Xiaoyu Zhang
- Key Laboratory of
Songliao Aquatic Environment, Ministry of Education, Jilin Jianzhu University, Changchun City 130118, Jilin Province, The People’s Republic
of China
- School of Municipal and Environmental Engineering, Jilin Jianzhu University, Changchun City 113118, Jilin Province, The People’s Republic
of China
| | - Xiaoling Wang
- Key Laboratory of
Songliao Aquatic Environment, Ministry of Education, Jilin Jianzhu University, Changchun City 130118, Jilin Province, The People’s Republic
of China
- School of Municipal and Environmental Engineering, Jilin Jianzhu University, Changchun City 113118, Jilin Province, The People’s Republic
of China
| | - Weihao Feng
- Key Laboratory of
Songliao Aquatic Environment, Ministry of Education, Jilin Jianzhu University, Changchun City 130118, Jilin Province, The People’s Republic
of China
- School of Municipal and Environmental Engineering, Jilin Jianzhu University, Changchun City 113118, Jilin Province, The People’s Republic
of China
| | - Xueqi Li
- Key Laboratory of
Songliao Aquatic Environment, Ministry of Education, Jilin Jianzhu University, Changchun City 130118, Jilin Province, The People’s Republic
of China
- School of Municipal and Environmental Engineering, Jilin Jianzhu University, Changchun City 113118, Jilin Province, The People’s Republic
of China
| | - Hai Lu
- College of Civil Engineering and Architecture, Changchun Sci-Tech University, Changchun City 130600, Jilin Province, The People’s Republic
of China
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Cui H, Yang Y, Ding Y, Li D, Zhen G, Lu X, Huang M, Huang X. A novel pilot-scale tubular bioreactor-enhanced floating treatment wetland for efficient in situ nitrogen removal from urban landscape water: Long-term performance and microbial mechanisms. WATER ENVIRONMENT RESEARCH : A RESEARCH PUBLICATION OF THE WATER ENVIRONMENT FEDERATION 2019; 91:1498-1508. [PMID: 31102431 DOI: 10.1002/wer.1147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/01/2019] [Revised: 05/10/2019] [Accepted: 05/13/2019] [Indexed: 06/09/2023]
Abstract
In order to strengthen in situ nitrogen removal of urban landscape water, a novel pilot-scale tubular bioreactor-enhanced floating treatment wetland (TB-EFTW) was constructed, and the long-term performance and responsible microbial mechanisms were investigated in this study. The results showed that the system could remove 81.5% nitrogen from the landscape water after 240 days' operation. Moreover, the contribution rate of plant absorption to nitrogen was low (8.3%), which indicated that microbial biotransformation rather than plant absorption played a more key role in nitrogen removal in TB-EFTW system. The declining dissolved oxygen (DO) concentration along the axial direction of tubular bioreactor (TB) resulted in the sequential bacterial community of nitrifying, aerobic denitrifying, and anoxic denitrifying bacteria in the front, middle, and final part of TB. High-throughput sequencing results demonstrated that the internal environment of the system realized the coexistence of nitrifying, aerobic denitrifying and anoxic denitrifying process. The reason was mainly because that oxic-anoxic (O-A) areas were formed in sequence along the axial direction of tubular bioreactor. Overall, a unique advantage in nitrogen removal was achieved in TB-EFTW, which could provide important references for in situ treatment of urban landscape water. PRACTITIONER POINTS: TB-EFTW strengthened nitrogen removal for in situ urban landscape water treatment. Microbial conversion played a key role in nitrogen removal of the TB-EFTW system. The unique distribution of oxic-anoxic (O-A) areas was formed in sequence along the TB. Nitrification, aerobic, and anoxic denitrification were synergistically involved in the TB.
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Affiliation(s)
- He Cui
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Yinchuan Yang
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Yu Ding
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Dan Li
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Guangyin Zhen
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
- Shanghai Institute of Pollution Control and Ecological Security, Shanghai, China
| | - Xueqin Lu
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
- Institute of Eco-Chongming (IEC), Shanghai, China
| | - Minsheng Huang
- Shanghai Key Lab for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Xiao Huang
- School of Civil and Environmental Engineering, Harbin Institute of Technology (Shenzhen), Shenzhen, China
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23
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Yang M, Lu D, Yang J, Zhao Y, Zhao Q, Sun Y, Liu H, Ma J. Carbon and nitrogen metabolic pathways and interaction of cold-resistant heterotrophic nitrifying bacteria under aerobic and anaerobic conditions. CHEMOSPHERE 2019; 234:162-170. [PMID: 31207421 DOI: 10.1016/j.chemosphere.2019.06.052] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 06/06/2019] [Accepted: 06/07/2019] [Indexed: 06/09/2023]
Abstract
In this study, both the carbon and nitrogen metabolisms of two heterotrophic nitrification bacteria were investigated under aerobic and anaerobic conditions at 2 °C. Similar catabolism and anabolism trends were observed for the two bacteria in stable experimental systems under aerobic and anaerobic conditions. Based on the nitrogen and carbon balance analysis and adenosine triphosphate (ATP) calculation, we proposed the following metabolic pathways: i) aerobic: except for microbial assimilation, the carbon and nitrogen sources were removed through respiration and nitrification, which provided energy for cell synthesis; and ii) anaerobic: the nitrification process almost stopped and most of the carbon sources decomposed into inorganic carbon, which dissolved in the medium. Based on our proposed metabolic pathways, we speculated that the nitrifying process almost stopped under anaerobic conditions and the nitrification bacteria would degrade more carbon contaminants to produce energy and maintain the cell growth. Furthermore, these bacteria may decompose the non-readily biodegradable carbon through anaerobic degradation. To verify these hypotheses, experiments with two types of synthetic wastewater were conducted: i) synthetic wastewater rich in carbon and poor in nitrogen, and higher carbon removal efficiencies of strain J and strain P (∼25%) were obtained under anaerobic conditions compared with aerobic conditions (∼19%); and ii) synthetic wastewater with recalcitrant carbon sources, and carbon removal efficiencies under anaerobic conditions were higher than those under aerobic conditions. The results of the synthetic wastewater experiments were consistent with the hypotheses and thus validated the metabolic pathways proposed for carbon and nitrogen.
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Affiliation(s)
- Mo Yang
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Dongwei Lu
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China.
| | - Jiaxuan Yang
- Central & Southern China Municipal Engineering Design and Research Institute Co., Ltd, Wuhan, 430010, China
| | - Yumeng Zhao
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Qi Zhao
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Yan Sun
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Huiling Liu
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China
| | - Jun Ma
- State Key Laboratory of Urban Water Resource and Environment, Harbin Institute of Technology, Harbin, 150090, China.
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25
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Zhang S, Liu F, Luo P, Xiao R, Zhu H, Wu J. Nitrous oxide emissions from pilot scale three-stage constructed wetlands with variable nitrogen loading. BIORESOURCE TECHNOLOGY 2019; 289:121687. [PMID: 31247526 DOI: 10.1016/j.biortech.2019.121687] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2019] [Revised: 06/16/2019] [Accepted: 06/18/2019] [Indexed: 06/09/2023]
Abstract
Pilot scale three-stage surface flow constructed wetlands (SFCWs) were constructed to study nitrous oxide (N2O) emissions from swine wastewater with different nitrogen levels. The SFCWs had mean total nitrogen (TN) removal efficiencies and removal rates of 84.6-97.1% and 0.6-2.4 g N m-2 d-1 respectively. The N2O emissions and nitrate nitrogen (NO3--N) concentration both peaked at a TN value of approximately 100 mg N L-1. N2O emissions had a positive correlation with NO3--N concentration (p < 0.001). This correlation suggests that the effect of TN loading on N2O emissions may be related to NO3--N in aquatic environment. Significant correlation was observed between N2O emission and the gene abundance of N2O reductase (nosZ; p < 0.05). The general linear model revealed that TN loading affected nosZ gene abundance. These results suggest that pollution loading should be considered to balance nitrogen removal and N2O emissions when designing constructed wetlands.
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Affiliation(s)
- Shunan Zhang
- Key Laboratory of Agro-ecological Processes in Subtropical Regions, Changsha Research Station for Agricultural & Environmental Monitoring, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Hunan 410125, PR China
| | - Feng Liu
- Key Laboratory of Agro-ecological Processes in Subtropical Regions, Changsha Research Station for Agricultural & Environmental Monitoring, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Hunan 410125, PR China.
| | - Pei Luo
- Key Laboratory of Agro-ecological Processes in Subtropical Regions, Changsha Research Station for Agricultural & Environmental Monitoring, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Hunan 410125, PR China
| | - Runlin Xiao
- Key Laboratory of Agro-ecological Processes in Subtropical Regions, Changsha Research Station for Agricultural & Environmental Monitoring, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Hunan 410125, PR China
| | - Huixiang Zhu
- Key Laboratory of Agro-ecological Processes in Subtropical Regions, Changsha Research Station for Agricultural & Environmental Monitoring, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Hunan 410125, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Jinshui Wu
- Key Laboratory of Agro-ecological Processes in Subtropical Regions, Changsha Research Station for Agricultural & Environmental Monitoring, Institute of Subtropical Agriculture, Chinese Academy of Sciences, Hunan 410125, PR China
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26
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Cubillos CF, Paredes A, Yáñez C, Palma J, Severino E, Vejar D, Grágeda M, Dorador C. Insights Into the Microbiology of the Chaotropic Brines of Salar de Atacama, Chile. Front Microbiol 2019; 10:1611. [PMID: 31354691 PMCID: PMC6637823 DOI: 10.3389/fmicb.2019.01611] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2019] [Accepted: 06/27/2019] [Indexed: 02/02/2023] Open
Abstract
Microbial life inhabiting hypersaline environments belong to a limited group of extremophile or extremotolerant taxa. Natural or artificial hypersaline environments are not limited to high concentrations of NaCl, and under such conditions, specific adaptation mechanisms are necessary to permit microbial survival and growth. Argentina, Bolivia, and Chile include three large salars (salt flats) which globally, represent the largest lithium reserves, and are commonly referred to as the Lithium Triangle Zone. To date, a large amount of information has been generated regarding chemical, geological, meteorological and economical perspectives of these salars. However, there is a remarkable lack of information regarding the biology of these unique environments. Here, we report the presence of two bacterial strains (isolates LIBR002 and LIBR003) from one of the most hypersaline lithium-dominated man-made environments (total salinity 556 g/L; 11.7 M LiCl) reported to date. Both isolates were classified to the Bacillus genera, but displayed differences in 16S rRNA gene and fatty acid profiles. Our results also revealed that the isolates are lithium-tolerant and that they are phylogenetically differentiated from those Bacillus associated with high NaCl concentration environments, and form a new clade from the Lithium Triangle Zone. To determine osmoadaptation strategies in these microorganisms, both isolates were characterized using morphological, metabolic and physiological attributes. We suggest that our characterization of bacterial isolates from a highly lithium-enriched environment has revealed that even at such extreme salinities with high concentrations of chaotropic solutes, scope for microbial life exists. These conditions have previously been considered to limit the development of life, and our work extends the window of life beyond high concentrations of MgCl2, as previously reported, to LiCl. Our results can be used to further the understanding of salt tolerance, most especially for LiCl-dominated brines, and likely have value as models for the understanding of putative extra-terrestrial (e.g., Martian) life.
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Affiliation(s)
- Carolina F. Cubillos
- Laboratorio de Complejidad Microbiana y Ecología Funcional, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
- Department of Chemical Engineering and Mineral Process, Center for Advanced Study of Lithium and Industrial Minerals, Universidad de Antofagasta, Antofagasta, Chile
- Centre for Biotechnology and Bioengineering, Universidad de Chile, Santiago, Chile
| | - Adrián Paredes
- Laboratorio Química Biológica, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
- Departamento de Química, Facultad de Ciencias Básicas, Universidad de Antofagasta, Antofagasta, Chile
| | - Carolina Yáñez
- Laboratorio Microbiología, Instituto de Biología, Facultad de Ciencias, Pontificia Universidad Católica de Valparaíso, Valparaíso, Chile
| | - Jenifer Palma
- Departamento de Ciencias de los Alimentos, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Antofagasta, Chile
| | - Esteban Severino
- Laboratorio de Complejidad Microbiana y Ecología Funcional, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
| | - Drina Vejar
- Laboratorio de Complejidad Microbiana y Ecología Funcional, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
- Centre for Biotechnology and Bioengineering, Universidad de Chile, Santiago, Chile
| | - Mario Grágeda
- Department of Chemical Engineering and Mineral Process, Center for Advanced Study of Lithium and Industrial Minerals, Universidad de Antofagasta, Antofagasta, Chile
| | - Cristina Dorador
- Laboratorio de Complejidad Microbiana y Ecología Funcional, Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile
- Centre for Biotechnology and Bioengineering, Universidad de Chile, Santiago, Chile
- Departamento de Biotecnología, Facultad de Ciencias del Mar y Recursos Biológicos, Universidad de Antofagasta, Antofagasta, Chile
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27
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Martin‐Cuadrado A, Senel E, Martínez‐García M, Cifuentes A, Santos F, Almansa C, Moreno‐Paz M, Blanco Y, García‐Villadangos M, Cura MÁG, Sanz‐Montero ME, Rodríguez‐Aranda JP, Rosselló‐Móra R, Antón J, Parro V. Prokaryotic and viral community of the sulfate‐rich crust from Peñahueca ephemeral lake, an astrobiology analogue. Environ Microbiol 2019; 21:3577-3600. [DOI: 10.1111/1462-2920.14680] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2019] [Revised: 05/09/2019] [Accepted: 05/11/2019] [Indexed: 11/29/2022]
Affiliation(s)
| | - Ece Senel
- Department of Physiology, Genetics and MicrobiologyUniversity of Alicante Alicante Spain
- Department of BiologyGraduate School of Sciences, Eskisehir Technical University Yunusemre Campus, Eskisehir 26470 Turkey
| | - Manuel Martínez‐García
- Department of Physiology, Genetics and MicrobiologyUniversity of Alicante Alicante Spain
| | - Ana Cifuentes
- Department of Ecology and Marine Resources, Marine Microbiology GroupMediterranean Institute for Advanced Studies (IMEDEA, CSIC‐UIB) Esporles Spain
| | - Fernando Santos
- Department of Physiology, Genetics and MicrobiologyUniversity of Alicante Alicante Spain
| | - Cristina Almansa
- Research Technical Services (SSTTI), Microscopy UnitUniversity of Alicante Alicante Spain
| | - Mercedes Moreno‐Paz
- Department of Molecular EvolutionCentro de Astrobiología (INTA‐CSIC) Madrid Spain
| | - Yolanda Blanco
- Department of Molecular EvolutionCentro de Astrobiología (INTA‐CSIC) Madrid Spain
| | | | | | | | | | - Ramon Rosselló‐Móra
- Department of BiologyGraduate School of Sciences, Eskisehir Technical University Yunusemre Campus, Eskisehir 26470 Turkey
| | - Josefa Antón
- Department of Physiology, Genetics and MicrobiologyUniversity of Alicante Alicante Spain
| | - Víctor Parro
- Department of Molecular EvolutionCentro de Astrobiología (INTA‐CSIC) Madrid Spain
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28
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Chen X, Wang X, Chen X, Zhong Z, Chen Z, Chen J, Jiang Y. Salt inhibition on partial nitritation performance of ammonium-rich saline wastewater in the zeolite biological aerated filter. BIORESOURCE TECHNOLOGY 2019; 280:287-294. [PMID: 30776655 DOI: 10.1016/j.biortech.2019.02.048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Revised: 02/06/2019] [Accepted: 02/08/2019] [Indexed: 06/09/2023]
Abstract
Influences of various concentrations of salinity (NaCl 0-25.0 g/L) on partial nitritation performance in a zeolite biological aerated filter (ZBAF) were investigated. The highest nitrite production rate (NPR) of 1.357 kg/(m3·d) and nitrite accumulation rate (NAR) of 99.0% was achieved with salt free wastewater. While after adding extra salt, NPR and ammonium removal efficiency (ARE) presented an obvious decline trend. The lowest NPR (0.599 kg/(m3·d)) and ARE (34.2%) were obtained with salinity of 25.0 g/L NaCl. It has been confirmed that addition of salt resulted in the increase of free ammonia (FA), and then further inhibited ammonium oxidizing bacteria (AOB). High-throughput sequencing analysis results further revealed that the relative abundance of AOB decreased in ZBAF. All results demonstrated that AOB was inhibited not only by high osmotic pressure caused by salt, but also by high FA.
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Affiliation(s)
- Xiaozhen Chen
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China; The Key Lab of Pollution Control and Ecosystem Restoration in Industry Clusters, Ministry of Education, China
| | - Xiaojun Wang
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China; The Key Lab of Pollution Control and Ecosystem Restoration in Industry Clusters, Ministry of Education, China; Hua An Biotech Co., Ltd., Foshan 528300, China.
| | - Xiaokun Chen
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China; The Key Lab of Pollution Control and Ecosystem Restoration in Industry Clusters, Ministry of Education, China
| | - Zhong Zhong
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China; The Key Lab of Pollution Control and Ecosystem Restoration in Industry Clusters, Ministry of Education, China
| | - Zhenguo Chen
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China; The Key Lab of Pollution Control and Ecosystem Restoration in Industry Clusters, Ministry of Education, China; Hua An Biotech Co., Ltd., Foshan 528300, China
| | - Jing Chen
- School of Environment and Energy, South China University of Technology, Guangzhou 510006, China; The Key Lab of Pollution Control and Ecosystem Restoration in Industry Clusters, Ministry of Education, China
| | - Yuanzhen Jiang
- Hualu Environmental Technology Co., Ltd., Guangzhou, China
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29
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Ramos‐Barbero MD, Martínez JM, Almansa C, Rodríguez N, Villamor J, Gomariz M, Escudero C, Rubin SDC, Antón J, Martínez‐García M, Amils R. Prokaryotic and viral community structure in the singular chaotropic salt lake Salar de Uyuni. Environ Microbiol 2019; 21:2029-2042. [DOI: 10.1111/1462-2920.14549] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Revised: 01/19/2019] [Accepted: 01/29/2019] [Indexed: 02/01/2023]
Affiliation(s)
| | - José M. Martínez
- Department of Virology and Microbiology, Centro de Biología Molecular Severo OchoaUniversidad Autónoma de Madrid (CBMSO, CSIC‐UAM) Cantoblanco, 28049 Madrid Spain
| | - Cristina Almansa
- Department of Physiology, Genetics and MicrobiologyUniversidad de Alicante Alicante Spain
| | - Nuria Rodríguez
- Department of Planetology and HabitabilityCentro de Astrobiología (CAB, INTA‐CSIC) 28055 Torrejón de Ardoz Spain
| | - Judith Villamor
- Department of Physiology, Genetics and MicrobiologyUniversidad de Alicante Alicante Spain
| | - María Gomariz
- Department of Physiology, Genetics and MicrobiologyUniversidad de Alicante Alicante Spain
| | - Cristina Escudero
- Department of Virology and Microbiology, Centro de Biología Molecular Severo OchoaUniversidad Autónoma de Madrid (CBMSO, CSIC‐UAM) Cantoblanco, 28049 Madrid Spain
| | - Sergio dC Rubin
- Department of Virology and Microbiology, Centro de Biología Molecular Severo OchoaUniversidad Autónoma de Madrid (CBMSO, CSIC‐UAM) Cantoblanco, 28049 Madrid Spain
- Université catholique de LouvainEarth and Life Institute, Georges Lemaître Centre for Earth and Climate Research Belgium
| | - Josefa Antón
- Department of Physiology, Genetics and MicrobiologyUniversidad de Alicante Alicante Spain
| | - Manuel Martínez‐García
- Department of Physiology, Genetics and MicrobiologyUniversidad de Alicante Alicante Spain
| | - Ricardo Amils
- Department of Virology and Microbiology, Centro de Biología Molecular Severo OchoaUniversidad Autónoma de Madrid (CBMSO, CSIC‐UAM) Cantoblanco, 28049 Madrid Spain
- Department of Planetology and HabitabilityCentro de Astrobiología (CAB, INTA‐CSIC) 28055 Torrejón de Ardoz Spain
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30
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Microbiota dispersion in the Uyuni salt flat (Bolivia) as determined by community structure analyses. Int Microbiol 2019; 22:325-336. [DOI: 10.1007/s10123-018-00052-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2018] [Revised: 11/13/2018] [Accepted: 12/10/2018] [Indexed: 10/27/2022]
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31
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Vera-Gargallo B, Ventosa A. Metagenomic Insights into the Phylogenetic and Metabolic Diversity of the Prokaryotic Community Dwelling in Hypersaline Soils from the Odiel Saltmarshes (SW Spain). Genes (Basel) 2018. [PMID: 29518047 PMCID: PMC5867873 DOI: 10.3390/genes9030152] [Citation(s) in RCA: 38] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
Hypersaline environments encompass aquatic and terrestrial habitats. While only a limited number of studies on the microbial diversity of saline soils have been carried out, hypersaline lakes and marine salterns have been thoroughly investigated, resulting in an aquatic-biased knowledge about life in hypersaline environments. To improve our understanding of the assemblage of microbes thriving in saline soils, we assessed the phylogenetic diversity and metabolic potential of the prokaryotic community of two hypersaline soils (with electrical conductivities of ~24 and 55 dS/m) from the Odiel saltmarshes (Spain) by metagenomics. Comparative analysis of these soil databases with available datasets from salterns ponds allowed further identification of unique and shared traits of microbial communities dwelling in these habitats. Saline soils harbored a more diverse prokaryotic community and, in contrast to their aquatic counterparts, contained sequences related to both known halophiles and groups without known halophilic or halotolerant representatives, which reflects the physical heterogeneity of the soil matrix. Our results suggest that Haloquadratum and certain Balneolaeota members may preferentially thrive in aquatic or terrestrial habitats, respectively, while haloarchaea, nanohaloarchaea and Salinibacter may be similarly adapted to both environments. We reconstructed 4 draft genomes related to Bacteroidetes, Balneolaeota and Halobacteria and appraised their metabolism, osmoadaptation strategies and ecology. This study greatly improves the current understanding of saline soils microbiota.
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Affiliation(s)
- Blanca Vera-Gargallo
- Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, 41012 Sevilla, Spain.
| | - Antonio Ventosa
- Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Sevilla, 41012 Sevilla, Spain.
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