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For: Vasar M, Davison J, Neuenkamp L, Sepp SK, Young JPW, Moora M, Öpik M. User-friendly bioinformatics pipeline gDAT (graphical downstream analysis tool) for analysing rDNA sequences. Mol Ecol Resour 2021;21:1380-1392. [PMID: 33527735 DOI: 10.1111/1755-0998.13340] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2020] [Revised: 01/19/2021] [Accepted: 01/21/2021] [Indexed: 01/04/2023]
Number Cited by Other Article(s)
1
Frew A, Öpik M, Oja J, Vahter T, Hiiesalu I, Aguilar-Trigueros CA. Herbivory-driven shifts in arbuscular mycorrhizal fungal community assembly: increased fungal competition and plant phosphorus benefits. THE NEW PHYTOLOGIST 2024;241:1891-1899. [PMID: 38084055 DOI: 10.1111/nph.19474] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/05/2023] [Accepted: 11/26/2023] [Indexed: 01/05/2024]
2
Wipulasena AYAP, Davison J, Helm A, Kasari L, Moora M, Prangel E, Reitalu T, Vahter T, Vasar M, Zobel M. Soil community composition in dynamic stages of semi-natural calcareous grassland. PLoS One 2023;18:e0292425. [PMID: 37847721 PMCID: PMC10581465 DOI: 10.1371/journal.pone.0292425] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2023] [Accepted: 09/20/2023] [Indexed: 10/19/2023]  Open
3
Touré GPT, Koné AW, Nandjui J, Ebou AET, Otinga AN, Maïga AA, Kouadjo CGZ, Tiho S, Zézé A. Changes in arbuscular mycorrhizal fungal communities, mycorrhizal soil infectivity, and phosphorus availability under Chromolaena odorata (Asteraceae) invasions in a West-African forest-savanna ecotone. MYCORRHIZA 2023;33:257-275. [PMID: 37289330 DOI: 10.1007/s00572-023-01113-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2023] [Accepted: 05/17/2023] [Indexed: 06/09/2023]
4
Vahter T, Lillipuu EM, Oja J, Öpik M, Vasar M, Hiiesalu I. Do commercial arbuscular mycorrhizal inoculants contain the species that they claim? MYCORRHIZA 2023;33:211-220. [PMID: 36786883 DOI: 10.1007/s00572-023-01105-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Accepted: 02/08/2023] [Indexed: 06/08/2023]
5
Liu S, Vasar M, Öpik M, Koorem K. Disturbance induces similar shifts in arbuscular mycorrhizal fungal communities from grassland and arable field soils. MYCORRHIZA 2023;33:153-164. [PMID: 36930376 DOI: 10.1007/s00572-023-01108-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 02/23/2023] [Indexed: 06/08/2023]
6
Venbrux M, Crauwels S, Rediers H. Current and emerging trends in techniques for plant pathogen detection. FRONTIERS IN PLANT SCIENCE 2023;14:1120968. [PMID: 37223788 PMCID: PMC10200959 DOI: 10.3389/fpls.2023.1120968] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/10/2022] [Accepted: 03/21/2023] [Indexed: 05/25/2023]
7
Zuev AG, Krivosheina MG, Leonov VD, Öpik M, Vasar M, Saraeva AK, Tiunov AV, Goncharov AA. Mycorrhiza-feeding soil invertebrates in two coniferous forests traced with 13C labelling. MYCORRHIZA 2023;33:59-68. [PMID: 36662299 DOI: 10.1007/s00572-023-01102-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Accepted: 01/10/2023] [Indexed: 06/17/2023]
8
Tosi M, Ogilvie CM, Spagnoletti FN, Fournier S, Martin RC, Dunfield KE. Cover Crops Modulate the Response of Arbuscular Mycorrhizal Fungi to Water Supply: A Field Study in Corn. PLANTS (BASEL, SWITZERLAND) 2023;12:plants12051015. [PMID: 36903877 PMCID: PMC10005079 DOI: 10.3390/plants12051015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2023] [Revised: 02/14/2023] [Accepted: 02/15/2023] [Indexed: 05/14/2023]
9
Sepp SK, Vasar M, Davison J, Oja J, Anslan S, Al-Quraishy S, Bahram M, Bueno CG, Cantero JJ, Fabiano EC, Decocq G, Drenkhan R, Fraser L, Garibay Oriel R, Hiiesalu I, Koorem K, Kõljalg U, Moora M, Mucina L, Öpik M, Põlme S, Pärtel M, Phosri C, Semchenko M, Vahter T, Vasco Palacios AM, Tedersoo L, Zobel M. Global diversity and distribution of nitrogen-fixing bacteria in the soil. FRONTIERS IN PLANT SCIENCE 2023;14:1100235. [PMID: 36743494 PMCID: PMC9895822 DOI: 10.3389/fpls.2023.1100235] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Accepted: 01/09/2023] [Indexed: 06/18/2023]
10
Vasar M, Davison J, Moora M, Sepp SK, Anslan S, Al-Quraishy S, Bahram M, Bueno CG, Cantero JJ, Fabiano EC, Decocq G, Drenkhan R, Fraser L, Oja J, Garibay-Orijel R, Hiiesalu I, Koorem K, Mucina L, Öpik M, Põlme S, Pärtel M, Phosri C, Semchenko M, Vahter T, Doležal J, Palacios AMV, Tedersoo L, Zobel M. Metabarcoding of soil environmental DNA to estimate plant diversity globally. FRONTIERS IN PLANT SCIENCE 2023;14:1106617. [PMID: 37143888 PMCID: PMC10151745 DOI: 10.3389/fpls.2023.1106617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/24/2022] [Accepted: 04/03/2023] [Indexed: 05/06/2023]
11
González Fradejas G, García de León D, Vasar M, Koorem K, Zobel M, Öpik M, Moora M, Rey Benayas JM. Hedgerows increase the diversity and modify the composition of arbuscular mycorrhizal fungi in Mediterranean agricultural landscapes. MYCORRHIZA 2022;32:397-407. [PMID: 36087125 PMCID: PMC9561024 DOI: 10.1007/s00572-022-01090-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2022] [Accepted: 09/02/2022] [Indexed: 06/15/2023]
12
Tedersoo L, Bahram M, Zinger L, Nilsson RH, Kennedy PG, Yang T, Anslan S, Mikryukov V. Best practices in metabarcoding of fungi: From experimental design to results. Mol Ecol 2022;31:2769-2795. [PMID: 35395127 DOI: 10.1111/mec.16460] [Citation(s) in RCA: 57] [Impact Index Per Article: 28.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 02/07/2022] [Accepted: 03/30/2022] [Indexed: 02/06/2023]
13
Vasar M, Davison J, Sepp SK, Oja J, Al-Quraishy S, Bueno CG, Cantero JJ, Fabiano EC, Decocq G, Fraser L, Hiiesalu I, Hozzein WN, Koorem K, Moora M, Mucina L, Onipchenko V, Öpik M, Pärtel M, Phosri C, Vahter T, Tedersoo L, Zobel M. Global taxonomic and phylogenetic assembly of AM fungi. MYCORRHIZA 2022;32:135-144. [PMID: 35138435 DOI: 10.1007/s00572-022-01072-7] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Accepted: 02/01/2022] [Indexed: 06/14/2023]
14
Apangu GP, Frisk CA, Petch GM, Muggia L, Pallavicini A, Hanson M, Skjøth CA. Environmental DNA reveals diversity and abundance of Alternaria species in neighbouring heterogeneous landscapes in Worcester, UK. AEROBIOLOGIA 2022;38:457-481. [PMID: 36471880 PMCID: PMC9715499 DOI: 10.1007/s10453-022-09760-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Accepted: 09/28/2022] [Indexed: 05/05/2023]
15
Liu S, Moora M, Vasar M, Zobel M, Öpik M, Koorem K. Arbuscular mycorrhizal fungi promote small-scale vegetation recovery in the forest understorey. Oecologia 2021;197:685-697. [PMID: 34716490 DOI: 10.1007/s00442-021-05065-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/27/2021] [Accepted: 10/17/2021] [Indexed: 11/26/2022]
16
Hoeffner K, Beylich A, Chabbi A, Cluzeau D, Dascalu D, Graefe U, Guzmán G, Hallaire V, Hanisch J, Landa BB, Linsler D, Menasseri S, Öpik M, Potthoff M, Sandor M, Scheu S, Schmelz RM, Engell I, Schrader S, Vahter T, Banse M, Nicolaï A, Plaas E, Runge T, Roslin T, Decau ML, Sepp SK, Arias-Giraldo LF, Busnot S, Roucaute M, Pérès G. Legacy effects of temporary grassland in annual crop rotation on soil ecosystem services. THE SCIENCE OF THE TOTAL ENVIRONMENT 2021;780:146140. [PMID: 34030316 DOI: 10.1016/j.scitotenv.2021.146140] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Revised: 02/21/2021] [Accepted: 02/22/2021] [Indexed: 06/12/2023]
17
Frew A, Price JN, Oja J, Vasar M, Öpik M. Impacts of elevated atmospheric CO2 on arbuscular mycorrhizal fungi and their role in moderating plant allometric partitioning. MYCORRHIZA 2021;31:423-430. [PMID: 33674909 DOI: 10.1007/s00572-021-01025-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/26/2020] [Accepted: 02/18/2021] [Indexed: 06/12/2023]
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