1
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Fagan WF, Krishnan A, Liao Q, Fleming CH, Liao D, Lamb C, Patterson B, Wheeldon T, Martinez-Garcia R, Menezes JFS, Noonan MJ, Gurarie E, Calabrese JM. Intraspecific encounters can lead to reduced range overlap. MOVEMENT ECOLOGY 2024; 12:58. [PMID: 39215311 PMCID: PMC11365178 DOI: 10.1186/s40462-024-00501-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/04/2024] [Accepted: 08/20/2024] [Indexed: 09/04/2024]
Abstract
Direct encounters, in which two or more individuals are physically close to one another, are a topic of increasing interest as more and better movement data become available. Recent progress, including the development of statistical tools for estimating robust measures of changes in animals' space use over time, facilitates opportunities to link direct encounters between individuals with the long-term consequences of those encounters. Working with movement data for coyotes (Canis latrans) and grizzly bears (Ursus arctos horribilis), we investigate whether close intraspecific encounters were associated with spatial shifts in the animals' range distributions, as might be expected if one or both of the individuals involved in an encounter were seeking to reduce or avoid conflict over space. We analyze the movement data of a pair of coyotes in detail, identifying how a change in home range overlap resulting from altered movement behavior was apparently a consequence of a close intraspecific encounter. With grizzly bear movement data, we approach the problem as population-level hypothesis tests of the spatial consequences of encounters. We find support for the hypotheses that (1) close intraspecific encounters between bears are, under certain circumstances, associated with subsequent changes in overlap between range distributions and (2) encounters defined at finer spatial scales are followed by greater changes in space use. Our results suggest that animals can undertake long-term, large-scale spatial changes in response to close intraspecific encounters that have the potential for conflict. Overall, we find that analyses of movement data in a pairwise context can (1) identify distances at which individuals' proximity to one another may alter behavior and (2) facilitate testing of population-level hypotheses concerning the potential for direct encounters to alter individuals' space use.
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Affiliation(s)
- William F Fagan
- Department of Biology, University of Maryland, College Park, MD, USA.
| | - Ananke Krishnan
- Department of Biology, University of Maryland, College Park, MD, USA
| | - Qianru Liao
- Department of Biology, University of Maryland, College Park, MD, USA
| | - Christen H Fleming
- Department of Biology, University of Maryland, College Park, MD, USA
- Center for Advanced Systems Understanding (CASUS), Helmholtz-Zentrum Dresden-Rosendorf (HZDR), Görlitz, Germany
- Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, VA, USA
- Department of Biology, University of Central Florida, Orlando, FL, USA
| | - Daisy Liao
- Department of Biology, University of Maryland, College Park, MD, USA
| | - Clayton Lamb
- Department of Biology, University of British Columbia, Kelowna, BC, Canada
| | - Brent Patterson
- Ontario Ministry of Natural Resources and Forestry, Trent University, Peterborough, ON, Canada
| | - Tyler Wheeldon
- Ontario Ministry of Natural Resources and Forestry, Trent University, Peterborough, ON, Canada
| | - Ricardo Martinez-Garcia
- Center for Advanced Systems Understanding (CASUS), Helmholtz-Zentrum Dresden-Rosendorf (HZDR), Görlitz, Germany
- ICTP - South American Institute for Fundamental Research and Instituto de Física Teórica, Universidade Estadual Paulista - UNESP, São Paulo, SP, Brazil
| | - Jorge F S Menezes
- Center for Advanced Systems Understanding (CASUS), Helmholtz-Zentrum Dresden-Rosendorf (HZDR), Görlitz, Germany
- Feline Research Group, Mamirauá Institute for Sustainable Development, Tefé, AM, Brazil
| | - Michael J Noonan
- Department of Biology, The University of British Columbia Okanagan, Kelowna, BC, Canada
| | - Eliezer Gurarie
- Department of Environmental Biology, SUNY Environmental Science and Forestry, Syracuse, NY, USA
| | - Justin M Calabrese
- Department of Biology, University of Maryland, College Park, MD, USA
- Center for Advanced Systems Understanding (CASUS), Helmholtz-Zentrum Dresden-Rosendorf (HZDR), Görlitz, Germany
- Department of Ecological Modelling, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany
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2
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Cavazza S, Brogi R, Apollonio M. Sex-specific seasonal variations of wild boar distance traveled and home range size. Curr Zool 2024; 70:284-290. [PMID: 39035759 PMCID: PMC11255988 DOI: 10.1093/cz/zoad021] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2023] [Accepted: 05/05/2023] [Indexed: 07/23/2024] Open
Abstract
Distance traveled and home range size describe how animals move in space. The seasonal variations of these parameters are important to comprehensively understand animal ecology and its connection with reproductive behavior and energy costs. Researchers usually estimate the distance traveled as the sum of the straight-line displacements between sampled positions, but this approach is sensitive to the sampling frequency and does not account for the tortuosity of the animal's movements. By means of the continuous-time movement modeling which takes into account autocorrelation and tortuosity of movement data, we estimated the distance traveled and monthly home range size of 28 wild boar Sus scrofa and modeled their inter-sexual seasonal variability. Males traveled longer distances and used larger home ranges than females, particularly during the rut in autumn-winter, consistently with the different biological cycles of males and females. Males enlarged their home ranges during the rut but traveled constant average distances along the year, whereas females traveled shorter distances in correspondence with the peak of food resources and birth periods but exhibited constant home range size across seasons. The differences between the seasonal variation patterns of distance traveled and home range size, observed in both sexes, revealed the complex relationship between these two aspects of spatial behavior and the great opportunity of including both distance traveled and home range size in behavioral ecology investigations. We provided a detailed analysis of wild boar spatial behavior and its relationships with the reproductive cycles of males and females, promoting a deeper comprehension of their behavioral ecology.
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Affiliation(s)
- Silvia Cavazza
- Department of Veterinary Medicine, University of Sassari, via Vienna 2, I-07100 Sassari, Italy
| | - Rudy Brogi
- Department of Veterinary Medicine, University of Sassari, via Vienna 2, I-07100 Sassari, Italy
| | - Marco Apollonio
- Department of Veterinary Medicine, University of Sassari, via Vienna 2, I-07100 Sassari, Italy
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3
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Kraft S, Gandra M, Lennox RJ, Mourier J, Winkler AC, Abecasis D. Residency and space use estimation methods based on passive acoustic telemetry data. MOVEMENT ECOLOGY 2023; 11:12. [PMID: 36859381 PMCID: PMC9976422 DOI: 10.1186/s40462-022-00364-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/29/2022] [Accepted: 12/26/2022] [Indexed: 06/18/2023]
Abstract
Acoustic telemetry has helped overcome many of the challenges faced when studying the movement ecology of aquatic species, allowing to obtain unprecedented amounts of data. This has made it into one of the most widely used methods nowadays. Many ways to analyse acoustic telemetry data have been made available and deciding on how to analyse the data requires considering the type of research objectives, relevant properties of the data (e.g., resolution, study design, equipment), habits of the study species, researcher experience, among others. To ease this decision process, here we showcase (1) some of the methods used to estimate pseudo-positions and positions from raw acoustic telemetry data, (2) methods to estimate residency and (3) methods to estimate two-dimensional home and occurrence range using geometric or hull-based methods and density-distribution methods, a network-based approach, and three-dimensional methods. We provide examples of some of these were tested using a sample of real data. With this we intend to provide the necessary background for the selection of the method(s) that better fit specific research objectives when using acoustic telemetry.
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Affiliation(s)
- S Kraft
- Center of Marine Sciences (CCMAR), Universidade do Algarve, Faro, Portugal.
| | - M Gandra
- Center of Marine Sciences (CCMAR), Universidade do Algarve, Faro, Portugal
| | - R J Lennox
- Laboratory for Freshwater Ecology and Inland Fisheries at NORCE Norwegian Research Center, Bergen, Norway
- Norwegian Institute for Nature Research (NINA), Trondheim, Norway
| | - J Mourier
- MARBEC, Univ Montpellier, CNRS, Ifremer, IRD, Sète, France
| | - A C Winkler
- Center of Marine Sciences (CCMAR), Universidade do Algarve, Faro, Portugal
- Department of Ichthyology and Fisheries Science, Rhodes University, Makhanda, South Africa
| | - D Abecasis
- Center of Marine Sciences (CCMAR), Universidade do Algarve, Faro, Portugal
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4
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Pero EM, Palm EC, Chitwood MC, Hildreth AM, Keller BJ, Sumners JA, Hansen LP, Isabelle JL, Millspaugh JJ. Spatial acclimation of elk during population restoration to the Missouri Ozarks, USA. Anim Conserv 2023. [DOI: 10.1111/acv.12866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2023]
Affiliation(s)
- E. M. Pero
- Wildlife Biology Program University of Montana Missoula MT USA
| | - E. C. Palm
- Wildlife Biology Program University of Montana Missoula MT USA
| | - M. C. Chitwood
- Natural Resource Ecology & Management Oklahoma State University Stillwater OK USA
| | | | - B. J. Keller
- Minnesota Department of Natural Resources St. Paul MN USA
| | - J. A. Sumners
- Missouri Department of Conservation Jefferson City MO USA
| | - L. P. Hansen
- Missouri Department of Conservation Columbia MO USA
- Minnesota Department of Natural Resources St. Paul MN USA
| | - J. L. Isabelle
- Missouri Department of Conservation Columbia MO USA
- Minnesota Department of Natural Resources St. Paul MN USA
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5
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Popp S, Dornhaus A. Ants combine systematic meandering and correlated random walks when searching for unknown resources. iScience 2023; 26:105916. [PMID: 36866038 PMCID: PMC9971824 DOI: 10.1016/j.isci.2022.105916] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2022] [Revised: 11/07/2022] [Accepted: 12/29/2022] [Indexed: 01/31/2023] Open
Abstract
Animal search movements are typically assumed to be mostly random walks, although non-random elements may be widespread. We tracked ants (Temnothorax rugatulus) in a large empty arena, resulting in almost 5 km of trajectories. We tested for meandering by comparing the turn autocorrelations for empirical ant tracks and simulated, realistic Correlated Random Walks. We found that 78% of ants show significant negative autocorrelation around 10 mm (3 body lengths). This means that turns in one direction are likely followed by turns in the opposite direction after this distance. This meandering likely makes the search more efficient, as it allows ants to avoid crossing their own paths while staying close to the nest, avoiding return-travel time. Combining systematic search with stochastic elements may make the strategy less vulnerable to directional inaccuracies. This study is the first to find evidence for efficient search by regular meandering in a freely searching animal.
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Affiliation(s)
- Stefan Popp
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA,Corresponding author
| | - Anna Dornhaus
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA
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6
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Mastrantonio G. Modeling animal movement with directional persistence and attractive points. Ann Appl Stat 2022. [DOI: 10.1214/21-aoas1584] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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7
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Daskin JH, Becker JA, Kartzinel TR, Potter AB, Walker RH, Eriksson FAA, Buoncore C, Getraer A, Long RA, Pringle RM. Allometry of behavior and niche differentiation among congeneric African antelopes. ECOL MONOGR 2022. [DOI: 10.1002/ecm.1549] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Joshua H. Daskin
- Department of Ecology & Evolutionary Biology Princeton University Princeton NJ USA
- Archbold Biological Station Venus FL USA
| | - Justine A. Becker
- Department of Ecology & Evolutionary Biology Princeton University Princeton NJ USA
- Department of Zoology & Physiology University of Wyoming Laramie WY USA
| | - Tyler R. Kartzinel
- Department of Ecology & Evolutionary Biology Brown University Providence RI USA
| | - Arjun B. Potter
- Department of Ecology & Evolutionary Biology Princeton University Princeton NJ USA
| | - Reena H. Walker
- Department of Fish and Wildlife Sciences University of Idaho Moscow ID USA
| | | | - Courtney Buoncore
- Department of Ecology & Evolutionary Biology Princeton University Princeton NJ USA
| | - Alexander Getraer
- Department of Ecology & Evolutionary Biology Princeton University Princeton NJ USA
| | - Ryan A. Long
- Department of Fish and Wildlife Sciences University of Idaho Moscow ID USA
| | - Robert M. Pringle
- Department of Ecology & Evolutionary Biology Princeton University Princeton NJ USA
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8
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Teichroeb JA, Adams FV, Khwaja A, Stapelfeldt K, Stead SM. Tight quarters: ranging and feeding competition in a Colobus angolensis ruwenzorii multilevel society occupying a fragmented habitat. Behav Ecol Sociobiol 2022. [DOI: 10.1007/s00265-022-03166-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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9
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Stabach JA, Hughey LF, Crego RD, Fleming CH, Hopcraft JGC, Leimgruber P, Morrison TA, Ogutu JO, Reid RS, Worden JS, Boone RB. Increasing Anthropogenic Disturbance Restricts Wildebeest Movement Across East African Grazing Systems. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.846171] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The ability to move is essential for animals to find mates, escape predation, and meet energy and water demands. This is especially important across grazing systems where vegetation productivity can vary drastically between seasons or years. With grasslands undergoing significant changes due to climate change and anthropogenic development, there is an urgent need to determine the relative impacts of these pressures on the movement capacity of native herbivores. To measure these impacts, we fitted 36 white-bearded wildebeest (Connochaetes taurinus) with GPS collars across three study areas in southern Kenya (Amboseli Basin, Athi-Kaputiei Plains, and Mara) to test the relationship between movement (e.g., directional persistence, speed, home range crossing time) and gradients of vegetation productivity (i.e., NDVI) and anthropogenic disturbance. As expected, wildebeest moved the most (21.0 km day–1; CI: 18.7–23.3) across areas where movement was facilitated by low human footprint and necessitated by low vegetation productivity (Amboseli Basin). However, in areas with moderate vegetation productivity (Athi-Kaputiei Plains), wildebeest moved the least (13.3 km day–1; CI: 11.0–15.5). This deviation from expectations was largely explained by impediments to movement associated with a large human footprint. Notably, the movements of wildebeest in this area were also less directed than the other study populations, suggesting that anthropogenic disturbance (i.e., roads, fences, and the expansion of settlements) impacts the ability of wildebeest to move and access available resources. In areas with high vegetation productivity and moderate human footprint (Mara), we observed intermediate levels of daily movement (14.2 km day–1; CI: 12.3–16.1). Wildebeest across each of the study systems used grassland habitats outside of protected areas extensively, highlighting the importance of unprotected landscapes for conserving mobile species. These results provide unique insights into the interactive effects of climate and anthropogenic development on the movements of a dominant herbivore in East Africa and present a cautionary tale for the development of grazing ecosystems elsewhere.
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10
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Tilberg M, Dixon PM. Statistical inference for the Utilization Distribution Overlap Index (
UDOI
). Methods Ecol Evol 2022. [DOI: 10.1111/2041-210x.13813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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11
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Matthiopoulos J, Wakefield E, Jeglinski JWE, Furness RW, Trinder M, Tyler G, Mccluskie A, Allen S, Braithwaite J, Evans T. Integrated modelling of seabird‐habitat associations from multi‐platform data: A review. J Appl Ecol 2022. [DOI: 10.1111/1365-2664.14114] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Jason Matthiopoulos
- Institute of Biodiversity, Animal Health & Comparative Medicine College of Medical, Veterinary & Life Sciences, Graham Kerr Building, University of Glasgow Glasgow Scotland
- MacArthur Green Glasgow Scotland
| | - Ewan Wakefield
- Institute of Biodiversity, Animal Health & Comparative Medicine College of Medical, Veterinary & Life Sciences, Graham Kerr Building, University of Glasgow Glasgow Scotland
| | - Jana W. E. Jeglinski
- Institute of Biodiversity, Animal Health & Comparative Medicine College of Medical, Veterinary & Life Sciences, Graham Kerr Building, University of Glasgow Glasgow Scotland
| | | | | | | | - Aly Mccluskie
- RSPB Centre for Conservation Science RSPB, Etive House, Beechwood Park Inverness Scotland
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12
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Roshier DA, Carter A. Space use and interactions of two introduced mesopredators, European red fox and feral cat, in an arid landscape. Ecosphere 2021. [DOI: 10.1002/ecs2.3628] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Affiliation(s)
- David A. Roshier
- Australian Wildlife Conservancy PO Box 8070 Subiaco East Western Australia 6008 Australia
| | - Andrew Carter
- Australian Wildlife Conservancy PO Box 8070 Subiaco East Western Australia 6008 Australia
- Institute for Land, Water and Society Charles Sturt University PO Box 789 Albury New South Wales 2640 Australia
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13
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Noonan MJ, Martinez‐Garcia R, Davis GH, Crofoot MC, Kays R, Hirsch BT, Caillaud D, Payne E, Sih A, Sinn DL, Spiegel O, Fagan WF, Fleming CH, Calabrese JM. Estimating encounter location distributions from animal tracking data. Methods Ecol Evol 2021. [DOI: 10.1111/2041-210x.13597] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Michael J. Noonan
- Department of Biology, The Irving K. Barber Faculty of Science The University of British Columbia Kelowna BC Canada
- Smithsonian Conservation Biology InstituteNational Zoological Park Front Royal VA USA
| | - Ricardo Martinez‐Garcia
- ICTP South American Institute for Fundamental Research & Instituto de Fisica Teorica – UNESP Sao Paulo Brazil
| | - Grace H. Davis
- Department of Anthropology University of California Davis CA USA
- Smithsonian Tropical Research Institute Panama City Panama
- Department for the Ecology of Animal Societies Max Planck Institute of Animal Behavior Konstanz Germany
- Department of Biology University of Konstanz Konstanz Germany
- Centre for the Advanced Study of Collective Behaviour University of Konstanz Konstanz Germany
| | - Margaret C. Crofoot
- Department of Anthropology University of California Davis CA USA
- Smithsonian Tropical Research Institute Panama City Panama
- Department for the Ecology of Animal Societies Max Planck Institute of Animal Behavior Konstanz Germany
- Department of Biology University of Konstanz Konstanz Germany
- Centre for the Advanced Study of Collective Behaviour University of Konstanz Konstanz Germany
| | - Roland Kays
- North Carolina Museum of Natural Sciences and North Carolina State University Raleigh NC USA
| | - Ben T. Hirsch
- Smithsonian Tropical Research Institute Panama City Panama
- College of Science and Engineering James Cook University Townsville Qld Australia
| | - Damien Caillaud
- Department of Anthropology University of California Davis CA USA
| | - Eric Payne
- Department of Environmental Science and Policy University of California Davis Davis CA USA
| | - Andrew Sih
- Department of Environmental Science and Policy University of California Davis Davis CA USA
| | - David L. Sinn
- Department of Environmental Science and Policy University of California Davis Davis CA USA
| | - Orr Spiegel
- School of Zoology Faculty of Life Sciences Tel Aviv University Tel Aviv Israel
| | - William F. Fagan
- Department of Biology University of Maryland College Park MD USA
| | - Christen H. Fleming
- Smithsonian Conservation Biology InstituteNational Zoological Park Front Royal VA USA
- Department of Biology University of Maryland College Park MD USA
| | - Justin M. Calabrese
- Smithsonian Conservation Biology InstituteNational Zoological Park Front Royal VA USA
- Department of Biology University of Maryland College Park MD USA
- Center for Advanced Systems Understanding (CASUS) Görlitz Germany
- Helmholtz‐Zentrum Dresden Rossendorf (HZDR) Dresden Germany
- Department of Ecological Modelling Helmholtz Centre for Environmental Research (UFZ) Leipzig Germany
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14
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Noonan MJ, Fleming CH, Tucker MA, Kays R, Harrison A, Crofoot MC, Abrahms B, Alberts SC, Ali AH, Altmann J, Antunes PC, Attias N, Belant JL, Beyer DE, Bidner LR, Blaum N, Boone RB, Caillaud D, de Paula RC, de la Torre JA, Dekker J, DePerno CS, Farhadinia M, Fennessy J, Fichtel C, Fischer C, Ford A, Goheen JR, Havmøller RW, Hirsch BT, Hurtado C, Isbell LA, Janssen R, Jeltsch F, Kaczensky P, Kaneko Y, Kappeler P, Katna A, Kauffman M, Koch F, Kulkarni A, LaPoint S, Leimgruber P, Macdonald DW, Markham AC, McMahon L, Mertes K, Moorman CE, Morato RG, Moßbrucker AM, Mourão G, O'Connor D, Oliveira‐Santos LGR, Pastorini J, Patterson BD, Rachlow J, Ranglack DH, Reid N, Scantlebury DM, Scott DM, Selva N, Sergiel A, Songer M, Songsasen N, Stabach JA, Stacy‐Dawes J, Swingen MB, Thompson JJ, Ullmann W, Vanak AT, Thaker M, Wilson JW, Yamazaki K, Yarnell RW, Zieba F, Zwijacz‐Kozica T, Fagan WF, Mueller T, Calabrese JM. Effects of body size on estimation of mammalian area requirements. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2020; 34:1017-1028. [PMID: 32362060 PMCID: PMC7496598 DOI: 10.1111/cobi.13495] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2019] [Revised: 11/27/2019] [Accepted: 12/24/2019] [Indexed: 06/08/2023]
Abstract
Accurately quantifying species' area requirements is a prerequisite for effective area-based conservation. This typically involves collecting tracking data on species of interest and then conducting home-range analyses. Problematically, autocorrelation in tracking data can result in space needs being severely underestimated. Based on the previous work, we hypothesized the magnitude of underestimation varies with body mass, a relationship that could have serious conservation implications. To evaluate this hypothesis for terrestrial mammals, we estimated home-range areas with global positioning system (GPS) locations from 757 individuals across 61 globally distributed mammalian species with body masses ranging from 0.4 to 4000 kg. We then applied block cross-validation to quantify bias in empirical home-range estimates. Area requirements of mammals <10 kg were underestimated by a mean approximately15%, and species weighing approximately100 kg were underestimated by approximately50% on average. Thus, we found area estimation was subject to autocorrelation-induced bias that was worse for large species. Combined with the fact that extinction risk increases as body mass increases, the allometric scaling of bias we observed suggests the most threatened species are also likely to be those with the least accurate home-range estimates. As a correction, we tested whether data thinning or autocorrelation-informed home-range estimation minimized the scaling effect of autocorrelation on area estimates. Data thinning required an approximately93% data loss to achieve statistical independence with 95% confidence and was, therefore, not a viable solution. In contrast, autocorrelation-informed home-range estimation resulted in consistently accurate estimates irrespective of mass. When relating body mass to home range size, we detected that correcting for autocorrelation resulted in a scaling exponent significantly >1, meaning the scaling of the relationship changed substantially at the upper end of the mass spectrum.
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Affiliation(s)
- Michael J. Noonan
- Smithsonian Conservation Biology InstituteNational Zoological Park1500 Remount RoadFront RoyalVA22630U.S.A.
- Department of BiologyUniversity of MarylandCollege ParkMD20742U.S.A.
| | - Christen H. Fleming
- Smithsonian Conservation Biology InstituteNational Zoological Park1500 Remount RoadFront RoyalVA22630U.S.A.
- Department of BiologyUniversity of MarylandCollege ParkMD20742U.S.A.
| | - Marlee A. Tucker
- Senckenberg Biodiversity and Climate Research CentreSenckenberg Gesellschaft für NaturforschungSenckenberganlage 25Frankfurt (Main)60325Germany
- Department of Biological SciencesGoethe UniversityMax‐von‐Laue‐Straße 9Frankfurt (Main)60438Germany
- Department of Environmental ScienceInstitute for Wetland and Water ResearchRadboud UniversityP.O. Box 9010NijmegenGLNL‐6500The Netherlands
| | - Roland Kays
- North Carolina Museum of Natural SciencesBiodiversity LabRaleighNC27601U.S.A.
- Fisheries, Wildlife, and Conservation Biology Program, College of Natural Resources Campus Box 8001North Carolina State UniversityRaleighNC27695U.S.A.
| | - Autumn‐Lynn Harrison
- Migratory Bird CenterSmithsonian Conservation Biology InstituteWashingtonD.C.20013U.S.A.
| | - Margaret C. Crofoot
- Department of AnthropologyUniversity of California, DavisDavisCA95616U.S.A.
- Smithsonian Tropical Research InstituteBalboa Ancon0843‐03092Republic of Panama
| | - Briana Abrahms
- Environmental Research DivisionNOAA Southwest Fisheries Science CenterMontereyCA93940U.S.A.
| | - Susan C. Alberts
- Departments of Biology and Evolutionary AnthropologyDuke UniversityDurhamNC27708U.S.A.
| | | | - Jeanne Altmann
- Department of Ecology and EvolutionPrinceton University106A Guyot HallPrincetonNJ08544U.S.A.
| | - Pamela Castro Antunes
- Department of EcologyFederal University of Mato Grosso do SulCampo GrandeMS79070–900Brazil
| | - Nina Attias
- Programa de Pós‐Graduaçao em Biologia Animal, Universidade Federal do Mato Grosso do SulCidade UniversitáriaAv. Costa e SilvaCampo GrandeMato Grosso do Sul79070‐900Brazil
| | - Jerrold L. Belant
- Camp Fire Program in Wildlife Conservation, State University of New YorkCollege of Environmental Science and ForestrySyracuseNY13210U.S.A.
| | - Dean E. Beyer
- Michigan Department of Natural Resources1990 U.S. 41 SouthMarquetteMI49855U.S.A.
| | - Laura R. Bidner
- Department of AnthropologyUniversity of California, DavisDavisCA95616U.S.A.
- Mpala Research CentreNanyuki555–104000Kenya
| | - Niels Blaum
- University of Potsdam, Plant Ecology and Nature ConservationAm Mühlenberg 3Potsdam14476Germany
| | - Randall B. Boone
- Natural Resource Ecology LaboratoryColorado State UniversityFort CollinsCO80523U.S.A.
- Department of Ecosystem Science and SustainabilityColorado State UniversityFort CollinsCO80523U.S.A.
| | - Damien Caillaud
- Department of AnthropologyUniversity of California, DavisDavisCA95616U.S.A.
| | - Rogerio Cunha de Paula
- National Research Center for Carnivores ConservationChico Mendes Institute for the Conservation of BiodiversityEstrada Municipal Hisaichi Takebayashi 8600AtibaiaSP12952‐011Brazil
| | - J. Antonio de la Torre
- Instituto de Ecología, Universidad Nacional Autónoma de Mexico and CONACyTCiudad UniversitariaMexicoD.F.04318Mexico
| | - Jasja Dekker
- Jasja Dekker DierecologieEnkhuizenstraat 26ArnhemWZ6843The Netherlands
| | - Christopher S. DePerno
- Fisheries, Wildlife, and Conservation Biology Program, College of Natural Resources Campus Box 8001North Carolina State UniversityRaleighNC27695U.S.A.
| | - Mohammad Farhadinia
- Wildlife Conservation Research Unit, Department of ZoologyUniversity of OxfordTubney House, OxfordshireOxfordOX13 5QLU.K.
- Future4Leopards FoundationTehranIran
| | | | - Claudia Fichtel
- German Primate CenterBehavioral Ecology & Sociobiology UnitKellnerweg 4Göttingen37077Germany
| | - Christina Fischer
- Restoration Ecology, Department of Ecology and Ecosystem ManagementTechnische Universität MünchenEmil‐Ramann‐Straße 6Freising85354Germany
| | - Adam Ford
- The Irving K. Barber School of Arts and Sciences, Unit 2: BiologyThe University of British ColumbiaOkanagan Campus, SCI 109, 1177 Research RoadKelownaBCV1V 1V7Canada
| | - Jacob R. Goheen
- Department of Zoology and PhysiologyUniversity of WyomingLaramieWY82071U.S.A.
| | | | - Ben T. Hirsch
- Zoology and Ecology, College of Science and EngineeringJames Cook UniversityTownsvilleQLD4811Australia
| | - Cindy Hurtado
- Museo de Historia NaturalUniversidad Nacional Mayor de San MarcosLima15072Peru
- Department of Forest Resources ManagementThe University of British ColumbiaVancouverBCV6T 1Z4Canada
| | - Lynne A. Isbell
- Department of AnthropologyUniversity of California, DavisDavisCA95616U.S.A.
- Mpala Research CentreNanyuki555–104000Kenya
| | - René Janssen
- Bionet NatuuronderzoekValderstraat 39Stein6171ELThe Netherlands
| | - Florian Jeltsch
- University of Potsdam, Plant Ecology and Nature ConservationAm Mühlenberg 3Potsdam14476Germany
| | - Petra Kaczensky
- Norwegian Institute for Nature Research — NINASluppenTrondheimNO‐7485Norway
- Research Institute of Wildlife Ecology, University of Veterinary MedicineSavoyenstraße 1ViennaA‐1160Austria
| | - Yayoi Kaneko
- Tokyo University of Agriculture and TechnologyTokyo183–8509Japan
| | - Peter Kappeler
- German Primate CenterBehavioral Ecology & Sociobiology UnitKellnerweg 4Göttingen37077Germany
| | - Anjan Katna
- Ashoka Trust for Research in Ecology and the Environment (ATREE)BangaloreKarnataka560064India
- Manipal Academy of Higher EducationManipalKarnataka576104India
| | - Matthew Kauffman
- U.S. Geological Survey, Wyoming Cooperative Fish and Wildlife Research Unit, Department of Zoology and PhysiologyUniversity of WyomingLaramieWY82071U.S.A.
| | - Flavia Koch
- German Primate CenterBehavioral Ecology & Sociobiology UnitKellnerweg 4Göttingen37077Germany
| | - Abhijeet Kulkarni
- Ashoka Trust for Research in Ecology and the Environment (ATREE)BangaloreKarnataka560064India
| | - Scott LaPoint
- Max Planck Institute for OrnithologyVogelwarte RadolfzellAm Obstberg 1RadolfzellD‐78315Germany
- Black Rock Forest65 Reservoir RoadCornwallNY12518U.S.A.
| | - Peter Leimgruber
- Smithsonian Conservation Biology InstituteNational Zoological Park1500 Remount RoadFront RoyalVA22630U.S.A.
| | - David W. Macdonald
- Wildlife Conservation Research Unit, Department of ZoologyUniversity of OxfordTubney House, OxfordshireOxfordOX13 5QLU.K.
| | | | - Laura McMahon
- Office of Applied ScienceDepartment of Natural ResourcesRhinelanderWI54501U.S.A.
| | - Katherine Mertes
- Smithsonian Conservation Biology InstituteNational Zoological Park1500 Remount RoadFront RoyalVA22630U.S.A.
| | - Christopher E. Moorman
- Fisheries, Wildlife, and Conservation Biology Program, College of Natural Resources Campus Box 8001North Carolina State UniversityRaleighNC27695U.S.A.
| | - Ronaldo G. Morato
- National Research Center for Carnivores ConservationChico Mendes Institute for the Conservation of BiodiversityEstrada Municipal Hisaichi Takebayashi 8600AtibaiaSP12952‐011Brazil
- Institute for the Conservation of Neotropical Carnivores – Pró‐CarnívorosAtibaiaSao Paulo12945‐010Brazil
| | | | - Guilherme Mourão
- Embrapa PantanalRua 21 de setembro 1880Corumb´aMS79320–900Brazil
| | - David O'Connor
- Department of Biological SciencesGoethe UniversityMax‐von‐Laue‐Straße 9Frankfurt (Main)60438Germany
- San Diego Zoo Institute of Conservation Research15600 San Pasqual Valley RoadEscondidoCA92027U.S.A.
- National Geographic Partners1145 17th Street NWWashingtonD.C.20036U.S.A.
| | | | - Jennifer Pastorini
- Centre for Conservation and Research26/7 C2 Road, KodigahawewaJulpallamaTissamaharama82600Sri Lanka
- Anthropologisches InstitutUniversität ZürichWinterthurerstrasse 190Zurich8057Switzerland
| | - Bruce D. Patterson
- Integrative Research CenterField Museum of Natural HistoryChicagoIL60605U.S.A.
| | - Janet Rachlow
- Department of Fish and Wildlife SciencesUniversity of Idaho875 Perimeter Drive MS 1136MoscowID83844‐1136U.S.A.
| | - Dustin H. Ranglack
- Department of BiologyUniversity of Nebraska at KearneyKearneyNE68849U.S.A.
| | - Neil Reid
- Institute for Global Food Security (IGFS), School of Biological SciencesQueen's University BelfastBelfastBT9 5DLU.K.
| | - David M. Scantlebury
- School of Biological SciencesQueen's University Belfast19 Chlorine GardensBelfastNorthern IrelandBT9 5DLU.K.
| | - Dawn M. Scott
- School of Life SciencesKeele UniversityKeeleStaffordshireST5 5BGU.K.
| | - Nuria Selva
- Institute of Nature ConservationPolish Academy of SciencesMickiewicza 33Krakow31–120Poland
| | - Agnieszka Sergiel
- Institute of Nature ConservationPolish Academy of SciencesMickiewicza 33Krakow31–120Poland
| | - Melissa Songer
- Smithsonian Conservation Biology InstituteNational Zoological Park1500 Remount RoadFront RoyalVA22630U.S.A.
| | - Nucharin Songsasen
- Smithsonian Conservation Biology InstituteNational Zoological Park1500 Remount RoadFront RoyalVA22630U.S.A.
| | - Jared A. Stabach
- Smithsonian Conservation Biology InstituteNational Zoological Park1500 Remount RoadFront RoyalVA22630U.S.A.
| | - Jenna Stacy‐Dawes
- San Diego Zoo Institute of Conservation Research15600 San Pasqual Valley RoadEscondidoCA92027U.S.A.
| | - Morgan B. Swingen
- Fisheries, Wildlife, and Conservation Biology Program, College of Natural Resources Campus Box 8001North Carolina State UniversityRaleighNC27695U.S.A.
- 1854 Treaty Authority4428 Haines RoadDuluthMN55811U.S.A.
| | - Jeffrey J. Thompson
- Asociación Guyra Paraguay – CONACYTParque Ecológico Asunción VerdeAsuncion1101Paraguay
- Instituto SaiteCoronel Felix Cabrera 166Asuncion1101Paraguay
| | - Wiebke Ullmann
- University of Potsdam, Plant Ecology and Nature ConservationAm Mühlenberg 3Potsdam14476Germany
| | - Abi Tamim Vanak
- Ashoka Trust for Research in Ecology and the Environment (ATREE)BangaloreKarnataka560064India
- Wellcome Trust/DBT India AllianceHyderabad500034India
- School of Life SciencesUniversity of KwaZulu‐NatalWestvilleDurban4041South Africa
| | - Maria Thaker
- Centre for Ecological SciencesIndian Institute of ScienceBangalore560012India
| | - John W. Wilson
- Department of Zoology & EntomologyUniversity of PretoriaPretoria0002South Africa
| | - Koji Yamazaki
- Ibaraki Nature MuseumZoological Laboratory700 OsakiBando‐cityIbaraki306–0622Japan
- Forest Ecology LaboratoryDepartment of Forest ScienceTokyo University of Agriculture1‐1‐1 SakuragaokaSetagaya‐KuTokyo156–8502Japan
| | - Richard W. Yarnell
- School of Animal, Rural and Environmental SciencesNottingham Trent UniversityBrackenhurst CampusSouthwellNG25 0QFU.K.
| | - Filip Zieba
- Tatra National ParkKúznice 1Zakopane34–500Poland
| | | | - William F. Fagan
- Department of BiologyUniversity of MarylandCollege ParkMD20742U.S.A.
| | - Thomas Mueller
- Senckenberg Biodiversity and Climate Research CentreSenckenberg Gesellschaft für NaturforschungSenckenberganlage 25Frankfurt (Main)60325Germany
- Department of Biological SciencesGoethe UniversityMax‐von‐Laue‐Straße 9Frankfurt (Main)60438Germany
| | - Justin M. Calabrese
- Smithsonian Conservation Biology InstituteNational Zoological Park1500 Remount RoadFront RoyalVA22630U.S.A.
- Department of BiologyUniversity of MarylandCollege ParkMD20742U.S.A.
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Barry T, Gurarie E, Cheraghi F, Kojola I, Fagan WF. Does dispersal make the heart grow bolder? Avoidance of anthropogenic habitat elements across wolf life history. Anim Behav 2020. [DOI: 10.1016/j.anbehav.2020.06.015] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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16
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How range residency and long-range perception change encounter rates. J Theor Biol 2020; 498:110267. [PMID: 32275984 DOI: 10.1016/j.jtbi.2020.110267] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Revised: 03/18/2020] [Accepted: 04/02/2020] [Indexed: 11/22/2022]
Abstract
Encounter rates link movement strategies to intra- and inter-specific interactions, and therefore translate individual movement behavior into higher-level ecological processes. Indeed, a large body of interacting population theory rests on the law of mass action, which can be derived from assumptions of Brownian motion in an enclosed container with exclusively local perception. These assumptions imply completely uniform space use, individual home ranges equivalent to the population range, and encounter dependent on movement paths actually crossing. Mounting empirical evidence, however, suggests that animals use space non-uniformly, occupy home ranges substantially smaller than the population range, and are often capable of nonlocal perception. Here, we explore how these empirically supported behaviors change pairwise encounter rates. Specifically, we derive novel analytical expressions for encounter rates under Ornstein-Uhlenbeck motion, which features non-uniform space use and allows individual home ranges to differ from the population range. We compare OU-based encounter predictions to those of Reflected Brownian Motion, from which the law of mass action can be derived. For both models, we further explore how the interplay between the scale of perception and home-range size affects encounter rates. We find that neglecting realistic movement and perceptual behaviors can lead to systematic, non-negligible biases in encounter-rate predictions.
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17
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Mertes K, Stabach JA, Songer M, Wacher T, Newby J, Chuven J, Al Dhaheri S, Leimgruber P, Monfort S. Management Background and Release Conditions Structure Post-release Movements in Reintroduced Ungulates. Front Ecol Evol 2019. [DOI: 10.3389/fevo.2019.00470] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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18
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Mastrantonio G, Grazian C, Mancinelli S, Bibbona E. New formulation of the logistic-Gaussian process to analyze trajectory tracking data. Ann Appl Stat 2019. [DOI: 10.1214/19-aoas1289] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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19
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Noonan MJ, Fleming CH, Akre TS, Drescher-Lehman J, Gurarie E, Harrison AL, Kays R, Calabrese JM. Scale-insensitive estimation of speed and distance traveled from animal tracking data. MOVEMENT ECOLOGY 2019; 7:35. [PMID: 31788314 PMCID: PMC6858693 DOI: 10.1186/s40462-019-0177-1] [Citation(s) in RCA: 36] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/23/2019] [Accepted: 10/01/2019] [Indexed: 06/10/2023]
Abstract
BACKGROUND Speed and distance traveled provide quantifiable links between behavior and energetics, and are among the metrics most routinely estimated from animal tracking data. Researchers typically sum over the straight-line displacements (SLDs) between sampled locations to quantify distance traveled, while speed is estimated by dividing these displacements by time. Problematically, this approach is highly sensitive to the measurement scale, with biases subject to the sampling frequency, the tortuosity of the animal's movement, and the amount of measurement error. Compounding the issue of scale-sensitivity, SLD estimates do not come equipped with confidence intervals to quantify their uncertainty. METHODS To overcome the limitations of SLD estimation, we outline a continuous-time speed and distance (CTSD) estimation method. An inherent property of working in continuous-time is the ability to separate the underlying continuous-time movement process from the discrete-time sampling process, making these models less sensitive to the sampling schedule when estimating parameters. The first step of CTSD is to estimate the device's error parameters to calibrate the measurement error. Once the errors have been calibrated, model selection techniques are employed to identify the best fit continuous-time movement model for the data. A simulation-based approach is then employed to sample from the distribution of trajectories conditional on the data, from which the mean speed estimate and its confidence intervals can be extracted. RESULTS Using simulated data, we demonstrate how CTSD provides accurate, scale-insensitive estimates with reliable confidence intervals. When applied to empirical GPS data, we found that SLD estimates varied substantially with sampling frequency, whereas CTSD provided relatively consistent estimates, with often dramatic improvements over SLD. CONCLUSIONS The methods described in this study allow for the computationally efficient, scale-insensitive estimation of speed and distance traveled, without biases due to the sampling frequency, the tortuosity of the animal's movement, or the amount of measurement error. In addition to being robust to the sampling schedule, the point estimates come equipped with confidence intervals, permitting formal statistical inference. All the methods developed in this study are now freely available in the ctmmR package or the ctmmweb point-and-click web based graphical user interface.
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Affiliation(s)
- Michael J. Noonan
- Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Rd, Front Royal, 22630 USA
- Department of Biology, University of Maryland, College Park, 20742 USA
| | - Christen H. Fleming
- Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Rd, Front Royal, 22630 USA
- Department of Biology, University of Maryland, College Park, 20742 USA
| | - Thomas S. Akre
- Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Rd, Front Royal, 22630 USA
| | - Jonathan Drescher-Lehman
- Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Rd, Front Royal, 22630 USA
- Department of Biology, George Mason University, 4400 University Drive, Fairfax, 22030 USA
| | - Eliezer Gurarie
- Department of Biology, University of Maryland, College Park, 20742 USA
| | - Autumn-Lynn Harrison
- Migratory Bird Center, Smithsonian Conservation Biology Institute, National Zoological Park, Washington, DC, 20008 USA
| | - Roland Kays
- North Carolina Museum of Natural Sciences, Biodiversity Lab, Raleigh, 27601 USA
- Department of Forestry & Environmental Resources, North Carolina State University, 4400 University Drive, Raleigh, 27695 USA
| | - Justin M. Calabrese
- Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Rd, Front Royal, 22630 USA
- Department of Biology, University of Maryland, College Park, 20742 USA
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20
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D'haen M, Fennessy J, Stabach JA, Brandlová K. Population structure and spatial ecology of Kordofan giraffe in Garamba National Park, Democratic Republic of Congo. Ecol Evol 2019; 9:11395-11405. [PMID: 31641481 PMCID: PMC6802069 DOI: 10.1002/ece3.5640] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 08/09/2019] [Accepted: 08/11/2019] [Indexed: 11/11/2022] Open
Abstract
Population numbers of Kordofan giraffe (Giraffa camelopardalis antiquorum) have declined throughout its range by more than 85% in the last three decades, including in the isolated easternmost population found in the Garamba National Park (NP) in the Democratic Republic of Congo.We provide new data on the conservation status and ecology of Kordofan giraffe in Garamba NP, specifically on the current population dynamics, distribution patterns, and spatial ecology for informed conservation management decisions.Data were gathered between September 26, 2016, and August 17, 2017, through direct observation and from eight GPS satellite collars deployed in early 2016. Movements, distribution patterns, and autocorrelated kernel density home ranges were estimated using the Continuous-Time Movement Modeling (CTMM) framework. We then compared results with home ranges calculated using the kernel density estimation (95% KDE) method.The Garamba NP population was estimated to be 45 giraffe with a female-dominated sex ratio (35% males; 65% females), and adult-dominated age class ratio (11.2% juveniles; 17.7% subadults; 71.1% adults). The giraffe's distribution was limited to the south-central sector of the Park, and giraffe were divided over different areas with some degree of connectivity. The average giraffe home range size was 934.3 km2 using AKDE and 268.8 km2 using KDE. Both methods have shown surprisingly large home ranges despite of the relatively high humidity of Garamba NP.Based on the outcomes of this research, urgent conservation action is needed to protect Garamba's remaining giraffe population.
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Affiliation(s)
- Mathias D'haen
- Garamba National ParkNageroDemocratic Republic of the Congo
- African Parks NetworkJohannesburgSouth Africa
- Department of Animal Science and Food ProcessingFaculty of Tropical AgriSciencesCzech University of Life Sciences PraguePragueCzechia
| | | | - Jared A. Stabach
- Conservation Ecology CenterSmithsonian National Zoo & Conservation Biology InstituteFront RoyalVAUSA
| | - Karolína Brandlová
- Department of Animal Science and Food ProcessingFaculty of Tropical AgriSciencesCzech University of Life Sciences PraguePragueCzechia
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21
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Fleming CH, Noonan MJ, Medici EP, Calabrese JM. Overcoming the challenge of small effective sample sizes in home‐range estimation. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13270] [Citation(s) in RCA: 34] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Christen H. Fleming
- Smithsonian Conservation Biology Institute Front Royal VA USA
- Department of Biology University of Maryland College Park MD USA
| | - Michael J. Noonan
- Smithsonian Conservation Biology Institute Front Royal VA USA
- Department of Biology University of Maryland College Park MD USA
| | - Emilia Patricia Medici
- Lowland Tapir Conservation Initiative, Instituto de Pesquisas Ecologicas Campo Grande Mato Grosso do Sul Brazil
| | - Justin M. Calabrese
- Smithsonian Conservation Biology Institute Front Royal VA USA
- Department of Biology University of Maryland College Park MD USA
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22
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Improved foraging by switching between diffusion and advection: benefits from movement that depends on spatial context. THEOR ECOL-NETH 2019. [DOI: 10.1007/s12080-019-00434-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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23
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Nandintsetseg D, Bracis C, Olson KA, Böhning‐Gaese K, Calabrese JM, Chimeddorj B, Fagan WF, Fleming CH, Heiner M, Kaczensky P, Leimgruber P, Munkhnast D, Stratmann T, Mueller T. Challenges in the conservation of wide‐ranging nomadic species. J Appl Ecol 2019. [DOI: 10.1111/1365-2664.13380] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Dejid Nandintsetseg
- Senckenberg Biodiversity and Climate Research CentreSenckenberg Gesellschaft für Naturforschung Frankfurt (Main) Germany
- Department of Biological SciencesGoethe University Frankfurt, Frankfurt (Main) Germany
| | - Chloe Bracis
- Senckenberg Biodiversity and Climate Research CentreSenckenberg Gesellschaft für Naturforschung Frankfurt (Main) Germany
- Department of Biological SciencesGoethe University Frankfurt, Frankfurt (Main) Germany
- Ifremer, Channel and North Sea Fisheries Research Unit Boulogne‐sur‐Mer France
| | - Kirk A. Olson
- Wildlife Conservation SocietyMongolia Country Program Ulaanbaatar Mongolia
- Smithsonian Conservation Biology InstituteNational Zoological Park Front Royal Virginia
| | - Katrin Böhning‐Gaese
- Senckenberg Biodiversity and Climate Research CentreSenckenberg Gesellschaft für Naturforschung Frankfurt (Main) Germany
- Department of Biological SciencesGoethe University Frankfurt, Frankfurt (Main) Germany
| | - Justin M. Calabrese
- Smithsonian Conservation Biology InstituteNational Zoological Park Front Royal Virginia
- Department of BiologyUniversity of Maryland College Park Maryland
| | | | - William F. Fagan
- Department of BiologyUniversity of Maryland College Park Maryland
- SESYNCUniversity of Maryland Annapolis Maryland
| | - Christen H. Fleming
- Smithsonian Conservation Biology InstituteNational Zoological Park Front Royal Virginia
- Department of BiologyUniversity of Maryland College Park Maryland
| | | | - Petra Kaczensky
- Norwegian Institute for Nature Research Trondheim Norway
- Research Institute of Wildlife EcologyUniversity of Veterinary Medicine Vienna Austria
| | - Peter Leimgruber
- Smithsonian Conservation Biology InstituteNational Zoological Park Front Royal Virginia
| | | | - Theresa Stratmann
- Senckenberg Biodiversity and Climate Research CentreSenckenberg Gesellschaft für Naturforschung Frankfurt (Main) Germany
- Department of Biological SciencesGoethe University Frankfurt, Frankfurt (Main) Germany
| | - Thomas Mueller
- Senckenberg Biodiversity and Climate Research CentreSenckenberg Gesellschaft für Naturforschung Frankfurt (Main) Germany
- Department of Biological SciencesGoethe University Frankfurt, Frankfurt (Main) Germany
- Smithsonian Conservation Biology InstituteNational Zoological Park Front Royal Virginia
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24
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Calabrese JM, Fleming CH, Fagan WF, Rimmler M, Kaczensky P, Bewick S, Leimgruber P, Mueller T. Disentangling social interactions and environmental drivers in multi-individual wildlife tracking data. Philos Trans R Soc Lond B Biol Sci 2019; 373:rstb.2017.0007. [PMID: 29581392 DOI: 10.1098/rstb.2017.0007] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2017] [Accepted: 10/31/2017] [Indexed: 11/12/2022] Open
Abstract
While many animal species exhibit strong conspecific interactions, movement analyses of wildlife tracking datasets still largely focus on single individuals. Multi-individual wildlife tracking studies provide new opportunities to explore how individuals move relative to one another, but such datasets are frequently too sparse for the detailed, acceleration-based analytical methods typically employed in collective motion studies. Here, we address the methodological gap between wildlife tracking data and collective motion by developing a general method for quantifying movement correlation from sparsely sampled data. Unlike most existing techniques for studying the non-independence of individual movements with wildlife tracking data, our approach is derived from an analytically tractable stochastic model of correlated movement. Our approach partitions correlation into a deterministic tendency to move in the same direction termed 'drift correlation' and a stochastic component called 'diffusive correlation'. These components suggest the mechanisms that coordinate movements, with drift correlation indicating external influences, and diffusive correlation pointing to social interactions. We use two case studies to highlight the ability of our approach both to quantify correlated movements in tracking data and to suggest the mechanisms that generate the correlation. First, we use an abrupt change in movement correlation to pinpoint the onset of spring migration in barren-ground caribou. Second, we show how spatial proximity mediates intermittently correlated movements among khulans in the Gobi desert. We conclude by discussing the linkages of our approach to the theory of collective motion.This article is part of the theme issue 'Collective movement ecology'.
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Affiliation(s)
- Justin M Calabrese
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, Front Royal, VA, USA
| | - Christen H Fleming
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, Front Royal, VA, USA.,Department of Biology, University of Maryland, College Park, MD, USA
| | - William F Fagan
- Department of Biology, University of Maryland, College Park, MD, USA
| | - Martin Rimmler
- Department of Biology, University of Stuttgart, Stuttgart, Germany
| | | | - Sharon Bewick
- Department of Biology, University of Maryland, College Park, MD, USA
| | - Peter Leimgruber
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, Front Royal, VA, USA
| | - Thomas Mueller
- Senckenberg Biodiversity and Climate Research Centre, Frankfurt, Germany.,Department of Biological Sciences, University Frankfurt, Frankfurt, Germany
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25
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Noonan MJ, Tucker MA, Fleming CH, Akre TS, Alberts SC, Ali AH, Altmann J, Antunes PC, Belant JL, Beyer D, Blaum N, Böhning‐Gaese K, Cullen L, Paula RC, Dekker J, Drescher‐Lehman J, Farwig N, Fichtel C, Fischer C, Ford AT, Goheen JR, Janssen R, Jeltsch F, Kauffman M, Kappeler PM, Koch F, LaPoint S, Markham AC, Medici EP, Morato RG, Nathan R, Oliveira‐Santos LGR, Olson KA, Patterson BD, Paviolo A, Ramalho EE, Rösner S, Schabo DG, Selva N, Sergiel A, Xavier da Silva M, Spiegel O, Thompson P, Ullmann W, Zięba F, Zwijacz‐Kozica T, Fagan WF, Mueller T, Calabrese JM. A comprehensive analysis of autocorrelation and bias in home range estimation. ECOL MONOGR 2019. [DOI: 10.1002/ecm.1344] [Citation(s) in RCA: 80] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Michael J. Noonan
- Smithsonian Conservation Biology Institute National Zoological Park 1500 Remount Road Front Royal Virginia 22630 USA
- Department of Biology University of Maryland College Park Maryland 20742 USA
| | - Marlee A. Tucker
- Senckenberg Biodiversity and Climate Research Centre Senckenberg Gesellschaft für Naturforschung Senckenberganlage 25 60325 Frankfurt (Main) Germany
- Department of Biological Sciences Goethe University Max‐von‐Laue‐Straße 9 60438 Frankfurt (Main) Germany
| | - Christen H. Fleming
- Smithsonian Conservation Biology Institute National Zoological Park 1500 Remount Road Front Royal Virginia 22630 USA
- Department of Biology University of Maryland College Park Maryland 20742 USA
| | - Thomas S. Akre
- Smithsonian Conservation Biology Institute National Zoological Park 1500 Remount Road Front Royal Virginia 22630 USA
| | - Susan C. Alberts
- Departments of Biology and Evolutionary Anthropology Duke University Durham North Carolina 27708 USA
| | | | - Jeanne Altmann
- Department of Ecology and Evolution Princeton University Princeton New Jersey 08544 USA
| | - Pamela Castro Antunes
- Department of Ecology Federal University of Mato Grosso do Sul Campo Grande MS 79070‐900 Brazil
| | - Jerrold L. Belant
- Camp Fire Program in Wildlife Conservation College of Environmental Science and Forestry State University of New York Syracuse New York 13210 USA
| | - Dean Beyer
- Conservation Ecology Faculty of Biology Philipps‐University Marburg Karl‐von‐Frisch Straße 8 Marburg D‐35043 Germany
| | - Niels Blaum
- Plant Ecology and Nature Conservation University of Potsdam Am Mühlenberg 3 14476 Potsdam Germany
| | - Katrin Böhning‐Gaese
- Senckenberg Biodiversity and Climate Research Centre Senckenberg Gesellschaft für Naturforschung Senckenberganlage 25 60325 Frankfurt (Main) Germany
- Department of Biological Sciences Goethe University Max‐von‐Laue‐Straße 9 60438 Frankfurt (Main) Germany
| | - Laury Cullen
- Instituto de Pesquisas Ecológicas Nazare Paulista Rod. Dom Pedro I, km 47 Caixa Postal 47 ‐ 12960‐000 Nazaré Paulista SP Brazil
| | - Rogerio Cunha Paula
- National Research Center for Carnivores Conservation Chico Mendes Institute for the Conservation of Biodiversity Estrada Municipal Hisaichi Takebayashi 8600 Atibaia SP 12952‐011 Brazil
| | - Jasja Dekker
- Jasja Dekker Dierecologie Enkhuizenstraat 26 6843 WZ Arnhem The Netherlands
| | - Jonathan Drescher‐Lehman
- Smithsonian Conservation Biology Institute National Zoological Park 1500 Remount Road Front Royal Virginia 22630 USA
- Department of Biology George Mason University 4400 University Drive Fairfax Virginia 22030 USA
| | - Nina Farwig
- Michigan Department of Natural Resources 1990 U.S. 41 South Marquette Michigan 49855 USA
| | - Claudia Fichtel
- Behavioral Ecology & Sociobiology Unit German Primate Center Kellnerweg 4 37077 Göttingen Germany
| | - Christina Fischer
- Restoration Ecology Department of Ecology and Ecosystem Management Technische Universität München Emil‐Ramann‐Straße 6 85354 Freising Germany
| | - Adam T. Ford
- Department of Biology University of British Columbia 1177 Research Road Kelowna British Columbia V1V 1V7 Canada
| | - Jacob R. Goheen
- Department of Zoology and Physiology University of Wyoming Laramie Wyoming 82071 USA
| | - René Janssen
- Bionet Natuuronderzoek Valderstraat 39 6171EL Stein The Netherlands
| | - Florian Jeltsch
- Plant Ecology and Nature Conservation University of Potsdam Am Mühlenberg 3 14476 Potsdam Germany
| | - Matthew Kauffman
- U.S. Geological Survey Wyoming Cooperative Fish and Wildlife Research Unit Department of Zoology and Physiology University of Wyoming Laramie Wyoming 82071 USA
| | - Peter M. Kappeler
- Behavioral Ecology & Sociobiology Unit German Primate Center Kellnerweg 4 37077 Göttingen Germany
| | - Flávia Koch
- Behavioral Ecology & Sociobiology Unit German Primate Center Kellnerweg 4 37077 Göttingen Germany
| | - Scott LaPoint
- Max Planck Institute for Ornithology, Vogelwarte Radolfzell Am Obstberg 1 D‐78315 Radolfzell Germany
- Lamont‐Doherty Earth Observatory Columbia University Palisades New York 10964 USA
| | - A. Catherine Markham
- Department of Anthropology Stony Brook University Stony Brook New York 11794 USA
| | - Emilia Patricia Medici
- Lowland Tapir Conservation Initiative (LTCI) Instituto de Pesquisas Ecologicas (IPE) & IUCN SSC Tapir Specialist Group (TSG) Rua Licuala 622, Damha 1, CEP: 79046‐150 Campo Grande Mato Grosso do Sul Brazil
| | - Ronaldo G. Morato
- National Research Center for Carnivores Conservation Chico Mendes Institute for the Conservation of Biodiversity Estrada Municipal Hisaichi Takebayashi 8600 Atibaia SP 12952‐011 Brazil
- Institute for the Conservation of Neotropical Carnivores – Pro‐Carnívoros Atibaia SP 12945‐010 Brazil
| | - Ran Nathan
- Movement Ecology Laboratory Department of Ecology, Evolution and Behavior Alexander Silberman Institute of Life Sciences The Hebrew University of Jerusalem Edmond J. Safra Campus Jerusalem 91904 Israel
| | | | - Kirk A. Olson
- Smithsonian Conservation Biology Institute National Zoological Park 1500 Remount Road Front Royal Virginia 22630 USA
- Wildlife Conservation Society Mongolia Program 201 San Business Center Amar Street 29, Small Ring Road, Sukhbaatar District Post 20A, Box‐21 Ulaanbaatar Mongolia
| | - Bruce D. Patterson
- Integrative Research Center Field Museum of Natural History Chicago Illinois 60605 USA
| | - Agustin Paviolo
- Instituto de Biología Subtropical Universidad Nacional de Misiones and CONICET Bertoni 85 3370 Puerto Iguazú Misiones Argentina
| | - Emiliano Esterci Ramalho
- Institute for the Conservation of Neotropical Carnivores – Pro‐Carnívoros Atibaia SP 12945‐010 Brazil
- Instituto de Desenvolvimento Sustentável Mamirauá Estrada do Bexiga, 2.584 Bairro Fonte Boa Caixa Postal 38 69.553‐225 Tefé Amazonas Brazil
| | - Sascha Rösner
- Michigan Department of Natural Resources 1990 U.S. 41 South Marquette Michigan 49855 USA
| | - Dana G. Schabo
- Michigan Department of Natural Resources 1990 U.S. 41 South Marquette Michigan 49855 USA
| | - Nuria Selva
- Institute of Nature Conservation Polish Academy of Sciences Mickiewicza 33 31‐120 Krakow Poland
| | - Agnieszka Sergiel
- Institute of Nature Conservation Polish Academy of Sciences Mickiewicza 33 31‐120 Krakow Poland
| | - Marina Xavier da Silva
- Projeto Carnívoros do Iguaçu Parque Nacional do Iguaçu BR‐469, Km 22.5, CEP 85851‐970 Foz do Iguaçu PR Brazil
| | - Orr Spiegel
- School of Zoology Faculty of Life Sciences Tel Aviv University Tel Aviv 69978 Israel
| | - Peter Thompson
- Department of Biology University of Maryland College Park Maryland 20742 USA
| | - Wiebke Ullmann
- Plant Ecology and Nature Conservation University of Potsdam Am Mühlenberg 3 14476 Potsdam Germany
| | - Filip Zięba
- Tatra National Park Kuźnice 1 34‐500 Zakopane Poland
| | | | - William F. Fagan
- Department of Biology University of Maryland College Park Maryland 20742 USA
| | - Thomas Mueller
- Senckenberg Biodiversity and Climate Research Centre Senckenberg Gesellschaft für Naturforschung Senckenberganlage 25 60325 Frankfurt (Main) Germany
- Department of Biological Sciences Goethe University Max‐von‐Laue‐Straße 9 60438 Frankfurt (Main) Germany
| | - Justin M. Calabrese
- Smithsonian Conservation Biology Institute National Zoological Park 1500 Remount Road Front Royal Virginia 22630 USA
- Department of Biology University of Maryland College Park Maryland 20742 USA
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Winner K, Noonan MJ, Fleming CH, Olson KA, Mueller T, Sheldon D, Calabrese JM. Statistical inference for home range overlap. Methods Ecol Evol 2018. [DOI: 10.1111/2041-210x.13027] [Citation(s) in RCA: 48] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Kevin Winner
- College of Information and Computer Sciences University of Massachusetts Amherst Amherst Massachusetts
| | - Michael J. Noonan
- Smithsonian Conservation Biology Institute National Zoological Park Front Royal Virginia
- Department of Biology University of Maryland College Park Maryland
| | - Christen H. Fleming
- Smithsonian Conservation Biology Institute National Zoological Park Front Royal Virginia
- Department of Biology University of Maryland College Park Maryland
| | - Kirk A. Olson
- Wildlife Conservation Society Mongolia Program Ulaanbaatar Mongolia
| | - Thomas Mueller
- Smithsonian Conservation Biology Institute National Zoological Park Front Royal Virginia
- Senckenberg Biodiversity and Climate Research Centre Senckenberg Gesellschaft für Naturforschung Frankfurt (Main) Germany
- Department of Biological Sciences Goethe University Frankfurt (Main) Germany
| | - Daniel Sheldon
- College of Information and Computer Sciences University of Massachusetts Amherst Amherst Massachusetts
- Department of Computer Science Mount Holyoke College South Hadley Massachusetts
| | - Justin M. Calabrese
- Smithsonian Conservation Biology Institute National Zoological Park Front Royal Virginia
- Department of Biology University of Maryland College Park Maryland
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Fleming CH, Sheldon D, Fagan WF, Leimgruber P, Mueller T, Nandintsetseg D, Noonan MJ, Olson KA, Setyawan E, Sianipar A, Calabrese JM. Correcting for missing and irregular data in home-range estimation. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2018; 28:1003-1010. [PMID: 29450936 DOI: 10.1002/eap.1704] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2017] [Revised: 11/13/2017] [Accepted: 01/02/2018] [Indexed: 06/08/2023]
Abstract
Home-range estimation is an important application of animal tracking data that is frequently complicated by autocorrelation, sampling irregularity, and small effective sample sizes. We introduce a novel, optimal weighting method that accounts for temporal sampling bias in autocorrelated tracking data. This method corrects for irregular and missing data, such that oversampled times are downweighted and undersampled times are upweighted to minimize error in the home-range estimate. We also introduce computationally efficient algorithms that make this method feasible with large data sets. Generally speaking, there are three situations where weight optimization improves the accuracy of home-range estimates: with marine data, where the sampling schedule is highly irregular, with duty cycled data, where the sampling schedule changes during the observation period, and when a small number of home-range crossings are observed, making the beginning and end times more independent and informative than the intermediate times. Using both simulated data and empirical examples including reef manta ray, Mongolian gazelle, and African buffalo, optimal weighting is shown to reduce the error and increase the spatial resolution of home-range estimates. With a conveniently packaged and computationally efficient software implementation, this method broadens the array of data sets with which accurate space-use assessments can be made.
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Affiliation(s)
- C H Fleming
- Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Road, Front Royal, Virginia, 22630, USA
- Department of Biology, University of Maryland College Park, College Park, Maryland, 20742, USA
- Conservation International Indonesia, Marine Program, Jalan Pejaten Barat 16A, Kemang, Jakarta, DKI Jakarta, 12550, Indonesia
| | - D Sheldon
- College of Information and Computer Sciences, University of Massachusetts Amherst, Amherst, Massachusetts, 01003-9264, USA
- Department of Computer Science, Mount Holyoke College, South Hadley, Massachusetts, 01075, USA
| | - W F Fagan
- Department of Biology, University of Maryland College Park, College Park, Maryland, 20742, USA
| | - P Leimgruber
- Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Road, Front Royal, Virginia, 22630, USA
| | - T Mueller
- Senckenberg Biodiversity and Climate Research Centre, Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, 60325, Frankfurt (Main), Germany
- Department of Biological Sciences, Goethe University, Max-von-Laue-Straße 9, 60438, Frankfurt (Main), Germany
| | - D Nandintsetseg
- Senckenberg Biodiversity and Climate Research Centre, Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, 60325, Frankfurt (Main), Germany
- Department of Biological Sciences, Goethe University, Max-von-Laue-Straße 9, 60438, Frankfurt (Main), Germany
| | - M J Noonan
- Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Road, Front Royal, Virginia, 22630, USA
| | - K A Olson
- Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Road, Front Royal, Virginia, 22630, USA
- Wildlife Conservation Society, Mongolia Program, 201 San Business Center, Amar Street 29, Small Ring Road, Sukhbaatar District, Post 20A, Box-21, Ulaanbaatar, Mongolia
| | - E Setyawan
- Manta Trust-Indonesian Manta Project, Badung, Bali, 80361, Indonesia
- Institute for Marine and Antarctic Studies, University of Tasmania, Launceston, Tasmania, 7250, Australia
| | - A Sianipar
- Conservation International Indonesia, Marine Program, Jalan Pejaten Barat 16A, Kemang, Jakarta, DKI Jakarta, 12550, Indonesia
| | - J M Calabrese
- Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Road, Front Royal, Virginia, 22630, USA
- Department of Biology, University of Maryland College Park, College Park, Maryland, 20742, USA
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Hooten MB, Scharf HR, Hefley TJ, Pearse AT, Weegman MD. Animal movement models for migratory individuals and groups. Methods Ecol Evol 2018. [DOI: 10.1111/2041-210x.13016] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Mevin B. Hooten
- U.S. Geological Survey, Colorado Cooperative Fish and Wildlife Research UnitDepartment of Fish, Wildlife, and ConservationDepartment of Fish, Wildlife, and ConservationColorado State University Fort Collins Colorado
- Department of StatisticsColorado State University Fort Collins Colorado
| | - Henry R. Scharf
- Department of StatisticsColorado State University Fort Collins Colorado
| | - Trevor J. Hefley
- Department of StatisticsKansas State University Manhattan Kansas
| | - Aaron T. Pearse
- U.S. Geological SurveyNorthern Prairie Wildlife Research Center Jamestown North Dakota
| | - Mitch D. Weegman
- School of Natural ResourcesUniversity of Missouri Columbia Missouri
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29
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Tarszisz E, Tomlinson S, Harrison ME, Morrogh-Bernard HC, Munn AJ. An ecophysiologically informed model of seed dispersal by orangutans: linking animal movement with gut passage across time and space. CONSERVATION PHYSIOLOGY 2018; 6:coy013. [PMID: 29942515 PMCID: PMC6007347 DOI: 10.1093/conphys/coy013] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Revised: 02/14/2018] [Accepted: 02/23/2018] [Indexed: 05/30/2023]
Abstract
Fauna-mediated ecosystem service provision (e.g. seed dispersal) can be difficult to quantify and predict because it is underpinned by the shifting niches of multiple interacting organisms. Such interactions are especially complex in tropical ecosystems, including endangered peat forests of Central Borneo, a biodiversity hot spot and home to the critically endangered orangutan (Pongo pygmaeus wurmbii). We combined studies of the digestive physiology of captive orangutans in Australia with detailed field studies of wild orangutans in the Natural Laboratory of Peat-Swamp Forest of Sabangau, Central Kalimantan, Indonesia. By measuring the gut transit time (TT) of indigestible seed mimics (beads) in captivity and applying this as a temporal constraint to movement data of wild orangutans, we developed a mechanistic, time-explicit spatial model to project the seed dispersal patterns by these large-bodied, arboreal frugivores. We followed seven orangutans and established home range kernels using Time Local Convex Hull (T-LoCoH) modelling. This allowed us to model individual orangutan movements and to adjust these models according to gut transit times to estimate seed dispersal kernels. Female movements were conservative (core ranges of 55 and 52 ha in the wet and dry seasons, respectively) and revisitation rates to the same location of n = 4 in each 24-h block. Male movements were more unpredictable, yielding fragmented core ranges and revisitation rates to the same location of only 1.2 times each 24 h; males also demonstrated large disjunctions where they moved rapidly over long distances and were frequently lost from view. Seed dispersal kernels were nested predictably within the core ranges of females, but not males. We used the T-LoCoH approach to analyse movement ecology, which offered a powerful tool to predict the primary deposition of seeds by orangutans, thereby providing a reliable method for making a priori predictions of seed dispersal dynamics by other frugivores in novel ecosystems.
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Affiliation(s)
- Esther Tarszisz
- School of Biological Sciences, University of Wollongong, Wollongong, NSW 2522, Australia
- Borneo Nature Foundation, Jl. Bukit Raya 82, Palangka Raya 73112, Central Kalimantan, Indonesia
| | - Sean Tomlinson
- School of Molecular & Life Sciences, Curtin University of Technology, Kent Street Bentley, WA 6102, Australia
- Kings Park Science, Department of Biodiversity Conservation and Attractions, Kattidj Close, Kings Park, WA 6005, Australia
| | - Mark E Harrison
- Borneo Nature Foundation, Jl. Bukit Raya 82, Palangka Raya 73112, Central Kalimantan, Indonesia
- School of Geography, Geology and the Environment, University of Leicester, University Road, Leicester LE1 7RH, UK
| | - Helen C Morrogh-Bernard
- Borneo Nature Foundation, Jl. Bukit Raya 82, Palangka Raya 73112, Central Kalimantan, Indonesia
- Centre for Ecology & Conservation, College of Life and Environmental Sciences, University of Exeter, Cornwall Campus, Penryn, Cornwall TR10 9EZ, UK
| | - Adam J Munn
- School of Biological Sciences, University of Wollongong, Wollongong, NSW 2522, Australia
- School of Biological, Earth and Environmental Sciences, The University of New South Wales, NSW 2052, Australia
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Liukkonen L, Ayllón D, Kunnasranta M, Niemi M, Nabe-Nielsen J, Grimm V, Nyman AM. Modelling movements of Saimaa ringed seals using an individual-based approach. Ecol Modell 2018. [DOI: 10.1016/j.ecolmodel.2017.12.002] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Affiliation(s)
- Mevin B. Hooten
- U.S. Geological Survey, Colorado Cooperative Fish and Wildlife Research Unit, Department of Fish, Wildlife, and Conservation Biology, Department of Statistics, Colorado State University, Fort Collins, CO
| | - Devin S. Johnson
- Alaska Fisheries Science Center, National Marine Fisheries Service, National Oceanic and Atmospheric Administration, Seattle, WA
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Sennhenn-Reulen H, Diedhiou L, Klapproth M, Zinner D. Estimation of baboon daily travel distances by means of point sampling - the magnitude of underestimation. Primate Biol 2017; 4:143-151. [PMID: 32110702 PMCID: PMC7041532 DOI: 10.5194/pb-4-143-2017] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Accepted: 06/02/2017] [Indexed: 01/18/2023] Open
Abstract
Daily travel distance (DTD), the distance an animal moves over the
course of the day, is an important metric in movement ecology. It provides
data with which to test hypotheses related to energetics and behaviour, e.g. impact of
group size or food distribution on DTDs. The automated tracking of movements
by applying GPS technology has become widely available and easy to implement. However, due to
battery duration constraints, it is necessary to select a tracking-time
resolution, which inevitably introduces an underestimation of the true
underlying path distance. Here we give a quantification of this inherent
systematic underestimation of DTDs for a terrestrial primate, the Guinea
baboon. We show that sampling protocols with interval lengths from 1 to
120 min underestimate DTDs on average by 7 to 35 %. For longer time
intervals (i.e. 60, 90, 120 min), the relative increase of deviation from
the “true” trajectory is less pronounced than for shorter intervals. Our
study provides first hints on the magnitude of error, which can be applied as
a corrective when estimating absolute DTDs in calculations on travelling
costs in terrestrial primates.
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Affiliation(s)
- Holger Sennhenn-Reulen
- Cognitive Ethology Laboratory, German Primate Center, Leibniz-Institute for Primate Research, Kellnerweg 4, 37077 Göttingen, Germany.,Leibniz ScienceCampus "Primate Cognition", German Primate Center/Leibniz Institute for Primate Research, Kellnerweg 4, 37077 Göttingen, Germany
| | | | - Matthias Klapproth
- Cognitive Ethology Laboratory, German Primate Center, Leibniz-Institute for Primate Research, Kellnerweg 4, 37077 Göttingen, Germany
| | - Dietmar Zinner
- Cognitive Ethology Laboratory, German Primate Center, Leibniz-Institute for Primate Research, Kellnerweg 4, 37077 Göttingen, Germany
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Fleming CH, Sheldon D, Gurarie E, Fagan WF, LaPoint S, Calabrese JM. Kálmán filters for continuous-time movement models. ECOL INFORM 2017. [DOI: 10.1016/j.ecoinf.2017.04.008] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Gurarie E, Cagnacci F, Peters W, Fleming CH, Calabrese JM, Mueller T, Fagan WF. A framework for modelling range shifts and migrations: asking when, whither, whether and will it return. J Anim Ecol 2017; 86:943-959. [DOI: 10.1111/1365-2656.12674] [Citation(s) in RCA: 38] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2016] [Accepted: 03/12/2017] [Indexed: 11/28/2022]
Affiliation(s)
- Eliezer Gurarie
- Department of Biology University of Maryland College Park MD 20742 USA
| | - Francesca Cagnacci
- Biodiversity and Molecular Ecology Department IASMA Research and Innovation Centre Fondazione Edmund Mach San Michele all’Adige Italy
- Department of Organismic and Evolutionary Biology Harvard University Cambridge MA USA
| | - Wibke Peters
- Biodiversity and Molecular Ecology Department IASMA Research and Innovation Centre Fondazione Edmund Mach San Michele all’Adige Italy
- Wildlife Biology Program College of Forestry and Conservation University of Montana Missoula MT USA
| | - Christen H. Fleming
- Department of Biology University of Maryland College Park MD 20742 USA
- Conservation Ecology Center Smithsonian Conservation Biology Institute National Zoological Park Front Royal VA USA
| | - Justin M. Calabrese
- Department of Biology University of Maryland College Park MD 20742 USA
- Conservation Ecology Center Smithsonian Conservation Biology Institute National Zoological Park Front Royal VA USA
| | - Thomas Mueller
- Biodiversity and Climate Research Centre Senckenberg Gesellschaft für Naturforschung Frankfurt Germany
- Department of Biological Sciences Goethe University Frankfurt Frankfurt Germany
| | - William F. Fagan
- Department of Biology University of Maryland College Park MD 20742 USA
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35
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Péron G, Fleming CH, Duriez O, Fluhr J, Itty C, Lambertucci S, Safi K, Shepard ELC, Calabrese JM. The energy landscape predicts flight height and wind turbine collision hazard in three species of large soaring raptor. J Appl Ecol 2017. [DOI: 10.1111/1365-2664.12909] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Guillaume Péron
- Smithsonian Conservation Biology Institute National Zoological Park Front Royal VA 22630 USA
- Univ Lyon Université Lyon 1 CNRS Laboratoire de Biométrie et Biologie Evolutive UMR5558 F‐69622 Villeurbanne France
| | - Christen H. Fleming
- Smithsonian Conservation Biology Institute National Zoological Park Front Royal VA 22630 USA
- Department of Biology University of Maryland College Park MD 4415 USA
| | - Olivier Duriez
- Centre d'Ecologie Fonctionnelle et Evolutive UMR 5175 CNRS‐Université de Montpellier – EPHE‐Université Paul Valery 1919 Route de Mende 34293 Montpellier Cedex 5 France
| | - Julie Fluhr
- Centre d'Ecologie Fonctionnelle et Evolutive UMR 5175 CNRS‐Université de Montpellier – EPHE‐Université Paul Valery 1919 Route de Mende 34293 Montpellier Cedex 5 France
| | - Christian Itty
- ONCFS SD34 Les Portes du Soleil 147 route de Lodève 34 990 Juvignac France
| | - Sergio Lambertucci
- Grupo de Biología de la Conservación Laboratorio Ecotono INIBIOMA (CONICET–Universidad Nacional del Comahue) Quintral 1250 8400 Bariloche Argentina
| | - Kamran Safi
- Max Planck Institut für Ornithologie Am Obstberg 1 78315 Radolfzell Germany
| | - Emily L. C. Shepard
- Swansea Laboratory for Animal Movement Biosciences College of Science Swansea University Singleton Park Swansea SA2 8PP UK
| | - Justin M. Calabrese
- Smithsonian Conservation Biology Institute National Zoological Park Front Royal VA 22630 USA
- Department of Biology University of Maryland College Park MD 4415 USA
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Gurarie E, Fleming CH, Fagan WF, Laidre KL, Hernández-Pliego J, Ovaskainen O. Correlated velocity models as a fundamental unit of animal movement: synthesis and applications. MOVEMENT ECOLOGY 2017; 5:13. [PMID: 28496983 PMCID: PMC5424322 DOI: 10.1186/s40462-017-0103-3] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/25/2016] [Accepted: 03/27/2017] [Indexed: 05/08/2023]
Abstract
BACKGROUND Continuous time movement models resolve many of the problems with scaling, sampling, and interpretation that affect discrete movement models. They can, however, be challenging to estimate, have been presented in inconsistent ways, and are not widely used. METHODS We review the literature on integrated Ornstein-Uhlenbeck velocity models and propose four fundamental correlated velocity movement models (CVM's): random, advective, rotational, and rotational-advective. The models are defined in terms of biologically meaningful speeds and time scales of autocorrelation. We summarize several approaches to estimating the models, and apply these tools for the higher order task of behavioral partitioning via change point analysis. RESULTS An array of simulation illustrate the precision and accuracy of the estimation tools. An analysis of a swimming track of a bowhead whale (Balaena mysticetus) illustrates their robustness to irregular and sparse sampling and identifies switches between slower and faster, and directed vs. random movements. An analysis of a short flight of a lesser kestrel (Falco naumanni) identifies exact moments when switches occur between loopy, thermal soaring and directed flapping or gliding flights. CONCLUSIONS We provide tools to estimate parameters and perform change point analyses in continuous time movement models as an R package (smoove). These resources, together with the synthesis, should facilitate the wider application and development of correlated velocity models among movement ecologists.
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Affiliation(s)
- Eliezer Gurarie
- Department of Biology, University of Maryland, College Park, MD, 20742 USA
| | - Christen H. Fleming
- Department of Biology, University of Maryland, College Park, MD, 20742 USA
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, Front Royal, VA, USA
| | - William F. Fagan
- Department of Biology, University of Maryland, College Park, MD, 20742 USA
| | - Kristin L. Laidre
- Polar Science Center, Applied Physics Laboratory, University of Washington, Seattle, 98195 WA USA
| | - Jesús Hernández-Pliego
- Department of Wetland Ecology, Estación Biológica de Doñana (EBD-CSIC), c/ Américo Vespucio s/n, Seville, 41092 Spain
| | - Otso Ovaskainen
- Department of Biosciences, University of Helsinki, Helsinki, 00014 Finland
- Centre for Biodiversity Dynamics, Department of Biology, University of Science and Technology, Trondheim, N-7491 Norway
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37
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Morato RG, Stabach JA, Fleming CH, Calabrese JM, De Paula RC, Ferraz KMPM, Kantek DLZ, Miyazaki SS, Pereira TDC, Araujo GR, Paviolo A, De Angelo C, Di Bitetti MS, Cruz P, Lima F, Cullen L, Sana DA, Ramalho EE, Carvalho MM, Soares FHS, Zimbres B, Silva MX, Moraes MDF, Vogliotti A, May JA, Haberfeld M, Rampim L, Sartorello L, Ribeiro MC, Leimgruber P. Space Use and Movement of a Neotropical Top Predator: The Endangered Jaguar. PLoS One 2016; 11:e0168176. [PMID: 28030568 PMCID: PMC5193337 DOI: 10.1371/journal.pone.0168176] [Citation(s) in RCA: 72] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Accepted: 11/25/2016] [Indexed: 11/19/2022] Open
Abstract
Accurately estimating home range and understanding movement behavior can provide important information on ecological processes. Advances in data collection and analysis have improved our ability to estimate home range and movement parameters, both of which have the potential to impact species conservation. Fitting continuous-time movement model to data and incorporating the autocorrelated kernel density estimator (AKDE), we investigated range residency of forty-four jaguars fit with GPS collars across five biomes in Brazil and Argentina. We assessed home range and movement parameters of range resident animals and compared AKDE estimates with kernel density estimates (KDE). We accounted for differential space use and movement among individuals, sex, region, and habitat quality. Thirty-three (80%) of collared jaguars were range resident. Home range estimates using AKDE were 1.02 to 4.80 times larger than KDE estimates that did not consider autocorrelation. Males exhibited larger home ranges, more directional movement paths, and a trend towards larger distances traveled per day. Jaguars with the largest home ranges occupied the Atlantic Forest, a biome with high levels of deforestation and high human population density. Our results fill a gap in the knowledge of the species' ecology with an aim towards better conservation of this endangered/critically endangered carnivore-the top predator in the Neotropics.
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Affiliation(s)
- Ronaldo G. Morato
- Centro Nacional de Pesquisa e Conservação de Mamíferos Carnívoros, Instituto Chico Mendes de Conservação da Biodiversidade, Atibaia, São Paulo, Brazil
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, Virginia, United States of America
- Instituto Pró-Carnívoros, Atibaia, São Paulo, Brazil
| | - Jared A. Stabach
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, Virginia, United States of America
| | - Chris H. Fleming
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, Virginia, United States of America
| | - Justin M. Calabrese
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, Virginia, United States of America
| | - Rogério C. De Paula
- Centro Nacional de Pesquisa e Conservação de Mamíferos Carnívoros, Instituto Chico Mendes de Conservação da Biodiversidade, Atibaia, São Paulo, Brazil
- Instituto Pró-Carnívoros, Atibaia, São Paulo, Brazil
| | - Kátia M. P. M. Ferraz
- Instituto Pró-Carnívoros, Atibaia, São Paulo, Brazil
- Escola Superior de Agricultura “Luiz de Queiroz”, Universidade de São Paulo, Piracicaba, Brazil
| | - Daniel L. Z. Kantek
- Estação Ecológica Taiamã, Instituto Chico Mendes de Conservação da Biodiversidade, Cáceres, Mato Grosso, Brazil
| | - Selma S. Miyazaki
- Estação Ecológica Taiamã, Instituto Chico Mendes de Conservação da Biodiversidade, Cáceres, Mato Grosso, Brazil
| | - Thadeu D. C. Pereira
- Estação Ecológica Taiamã, Instituto Chico Mendes de Conservação da Biodiversidade, Cáceres, Mato Grosso, Brazil
| | - Gediendson R. Araujo
- Departamento de Medicina Veterinária, Universidade Federal de Viçosa, Viçosa, Minas Gerais, Brazil
| | - Agustin Paviolo
- Instituto de Biología Subtropical, Universidad Nacional de Misiones and CONICET, Puerto Iguazú, Argentina
| | - Carlos De Angelo
- Instituto de Biología Subtropical, Universidad Nacional de Misiones and CONICET, Puerto Iguazú, Argentina
| | - Mario S. Di Bitetti
- Instituto de Biología Subtropical, Universidad Nacional de Misiones and CONICET, Puerto Iguazú, Argentina
| | - Paula Cruz
- Instituto de Biología Subtropical, Universidad Nacional de Misiones and CONICET, Puerto Iguazú, Argentina
| | - Fernando Lima
- IPÊ – Instituto de Pesquisas Ecológicas, Nazaré Paulista, São Paulo, Brazil
- Laboratório de Ecologia Espacial e Conservação, Instituto de Biociências, Univesidade Estadual de São Paulo, Rio Claro, São Paulo, Brazil
| | - Laury Cullen
- IPÊ – Instituto de Pesquisas Ecológicas, Nazaré Paulista, São Paulo, Brazil
| | - Denis A. Sana
- Instituto Pró-Carnívoros, Atibaia, São Paulo, Brazil
- Programa de Pós-graduação em Ecologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Brazil
| | - Emiliano E. Ramalho
- Instituto Pró-Carnívoros, Atibaia, São Paulo, Brazil
- Instituto de Desenvolvimento Sustentável Mamirauá, Tefé, Amazonas, Brazil
| | - Marina M. Carvalho
- Instituto de Defesa e Preservação dos Felídeos Brasileiros, Corumbá de Goiás, Goiás, Brazil
| | - Fábio H. S. Soares
- Instituto de Defesa e Preservação dos Felídeos Brasileiros, Corumbá de Goiás, Goiás, Brazil
| | - Barbara Zimbres
- Programa de Pós Graduação em Zoologia, Instituto de Ciências Biológicas, Universidade de Brasília, Federal District, Brazil
| | - Marina X. Silva
- Projeto Carnívoros do Iguaçu, Parque Nacional do Iguaçu, Instituto Chico Mendes de Conservação da Biodiversidade, Foz do Iguaçu, Paraná, Brazil
| | - Marcela D. F. Moraes
- Projeto Carnívoros do Iguaçu, Parque Nacional do Iguaçu, Instituto Chico Mendes de Conservação da Biodiversidade, Foz do Iguaçu, Paraná, Brazil
| | - Alexandre Vogliotti
- Instituto Pró-Carnívoros, Atibaia, São Paulo, Brazil
- Universidade Federal da Integração Latino-Americana, Foz do Iguaçu, Paraná, Brazil
| | - Joares A. May
- Projeto Onçafari Miranda, Mato Grosso do Sul, Brazil
| | | | - Lilian Rampim
- Projeto Onçafari Miranda, Mato Grosso do Sul, Brazil
| | | | - Milton C. Ribeiro
- Laboratório de Ecologia Espacial e Conservação, Instituto de Biociências, Univesidade Estadual de São Paulo, Rio Claro, São Paulo, Brazil
| | - Peter Leimgruber
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, Virginia, United States of America
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38
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Fleming CH, Calabrese JM. A new kernel density estimator for accurate home‐range and species‐range area estimation. Methods Ecol Evol 2016. [DOI: 10.1111/2041-210x.12673] [Citation(s) in RCA: 115] [Impact Index Per Article: 14.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Christen H. Fleming
- Smithsonian Conservation Biology Institute National Zoological Park 1500 Remount Road Front Royal VA 22630 USA
- Department of Biology University of Maryland College Park College Park MD 20742 USA
| | - Justin M. Calabrese
- Smithsonian Conservation Biology Institute National Zoological Park 1500 Remount Road Front Royal VA 22630 USA
- Department of Biology University of Maryland College Park College Park MD 20742 USA
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39
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Signer J, Ovaskainen O. Detecting the influence of environmental covariates on animal movement: a semivariance approach. Methods Ecol Evol 2016. [DOI: 10.1111/2041-210x.12692] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Johannes Signer
- Department of Wildlife Sciences University of Göttingen Büsgenweg 3 37077 Göttingen Germany
| | - Otso Ovaskainen
- Metapopulation Research Centre, Department of Biosciences University of Helsinki P.O. Box 65 FI‐00014 Finland
- Centre for Biodiversity Dynamics, Department of Biology Norwegian University of Science and Technology N‐7491 Trondheim Norway
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40
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Stein J, Lopes SRC, Medino AV. Continuous processes derived from the solution of generalized Langevin equation: theoretical properties and estimation. J STAT COMPUT SIM 2016. [DOI: 10.1080/00949655.2015.1132318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Affiliation(s)
- J. Stein
- Mathematics Institute, Federal University of Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - S. R. C. Lopes
- Mathematics Institute, Federal University of Rio Grande do Sul, Porto Alegre, RS, Brazil
| | - A. V. Medino
- Mathematics Department, University of Brasília, Brasília, DF, Brazil
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41
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Calabrese JM, Fleming CH, Gurarie E. ctmm: an
r
package for analyzing animal relocation data as a continuous‐time stochastic process. Methods Ecol Evol 2016. [DOI: 10.1111/2041-210x.12559] [Citation(s) in RCA: 238] [Impact Index Per Article: 29.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Justin M. Calabrese
- Smithsonian Conservation Biology Institute National Zoological Park 1500 Remount Rd. Front Royal VA 22630 USA
- Department of Biology University of Maryland College Park MD 20742 USA
| | - Chris H. Fleming
- Smithsonian Conservation Biology Institute National Zoological Park 1500 Remount Rd. Front Royal VA 22630 USA
- Department of Biology University of Maryland College Park MD 20742 USA
| | - Eliezer Gurarie
- Department of Biology University of Maryland College Park MD 20742 USA
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42
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Bastille-Rousseau G, Potts JR, Yackulic CB, Frair JL, Ellington EH, Blake S. Flexible characterization of animal movement pattern using net squared displacement and a latent state model. MOVEMENT ECOLOGY 2016; 4:15. [PMID: 27252856 PMCID: PMC4888472 DOI: 10.1186/s40462-016-0080-y] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2016] [Accepted: 04/13/2016] [Indexed: 05/21/2023]
Abstract
BACKGROUND Characterizing the movement patterns of animals is an important step in understanding their ecology. Various methods have been developed for classifying animal movement at both coarse (e.g., migratory vs. sedentary behavior) and fine (e.g., resting vs. foraging) scales. A popular approach for classifying movements at coarse resolutions involves fitting time series of net-squared displacement (NSD) to models representing different conceptualizations of coarse movement strategies (i.e., migration, nomadism, sedentarism, etc.). However, the performance of this method in classifying actual (as opposed to simulated) animal movements has been mixed. Here, we develop a more flexible method that uses the same NSD input, but relies on an underlying discrete latent state model. Using simulated data, we first assess how well patterns in the number of transitions between modes of movement and the duration of time spent in a mode classify movement strategies. We then apply our approach to elucidate variability in the movement strategies of eight giant tortoises (Chelonoidis sp.) using a multi-year (2009-2014) GPS dataset from three different Galapagos Islands. RESULTS With respect to patterns of time spent and the number of transitions between modes, our approach out-performed previous efforts to distinguish among migration, dispersal, and sedentary behavior. We documented marked inter-individual variation in giant tortoise movement strategies, with behaviors indicating migration, dispersal, nomadism and sedentarism, as well as hybrid behaviors such as "exploratory residence". CONCLUSIONS Distilling complex animal movement into discrete modes remains a fundamental challenge in movement ecology, a problem made more complex by the ever-longer duration, ever-finer resolution, and gap-ridden trajectories recorded by GPS devices. By clustering into modes, we derived information on the time spent within one mode and the number of transitions between modes which enabled finer differentiation of movement strategies over previous methods. Ultimately, the techniques developed here address limitations of previous approaches and provide greater insights with respect to characterization of movement strategies across scales by more fully utilizing long-term GPS telemetry datasets.
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Affiliation(s)
- Guillaume Bastille-Rousseau
- />Department of Environmental and Forest Biology, State University of New York, College of Environmental Science and Forestry, Syracuse, 13210 NY USA
- />Roosevelt Wild Life Station, State University of New York, College of Environmental Science and Forestry, Syracuse, 13210 NY USA
| | - Jonathan R. Potts
- />School of Mathematics and Statistics, University of Sheffield, Hicks Building, Hounsfield Road, Sheffield, S3 7RH UK
| | - Charles B. Yackulic
- />U.S. Geological Survey, Southwest Biological Science Center, Grand Canyon Monitoring and Research Center, Flagstaff, 86001 AZ USA
| | - Jacqueline L. Frair
- />Department of Environmental and Forest Biology, State University of New York, College of Environmental Science and Forestry, Syracuse, 13210 NY USA
- />Roosevelt Wild Life Station, State University of New York, College of Environmental Science and Forestry, Syracuse, 13210 NY USA
| | - E. Hance Ellington
- />School of Environment and Natural Resources, Ohio State University, Columbus, 43210 OH USA
| | - Stephen Blake
- />Department of Environmental and Forest Biology, State University of New York, College of Environmental Science and Forestry, Syracuse, 13210 NY USA
- />Saint Louis Zoo, WildCare Institute, 1 Government Drive, St. Louis, 63110 MO USA
- />Max Planck Institute for Ornithology, Radolfzell, Germany
- />Whitney Harris World Ecology Center, University of Missouri-St. Louis, St. Louis, 63121 MO USA
- />Department of Biology, Washington University in St. Louis, St. Louis, 63130 MO USA
- />Charles Darwin Foundation, Puerto Ayora, Galapagos Ecuador
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43
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Edelhoff H, Signer J, Balkenhol N. Path segmentation for beginners: an overview of current methods for detecting changes in animal movement patterns. MOVEMENT ECOLOGY 2016; 4:21. [PMID: 27595001 PMCID: PMC5010771 DOI: 10.1186/s40462-016-0086-5] [Citation(s) in RCA: 82] [Impact Index Per Article: 10.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2016] [Accepted: 08/09/2016] [Indexed: 05/07/2023]
Abstract
Increased availability of high-resolution movement data has led to the development of numerous methods for studying changes in animal movement behavior. Path segmentation methods provide basics for detecting movement changes and the behavioral mechanisms driving them. However, available path segmentation methods differ vastly with respect to underlying statistical assumptions and output produced. Consequently, it is currently difficult for researchers new to path segmentation to gain an overview of the different methods, and choose one that is appropriate for their data and research questions. Here, we provide an overview of different methods for segmenting movement paths according to potential changes in underlying behavior. To structure our overview, we outline three broad types of research questions that are commonly addressed through path segmentation: 1) the quantitative description of movement patterns, 2) the detection of significant change-points, and 3) the identification of underlying processes or 'hidden states'. We discuss advantages and limitations of different approaches for addressing these research questions using path-level movement data, and present general guidelines for choosing methods based on data characteristics and questions. Our overview illustrates the large diversity of available path segmentation approaches, highlights the need for studies that compare the utility of different methods, and identifies opportunities for future developments in path-level data analysis.
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Affiliation(s)
- Hendrik Edelhoff
- Department of Wildlife Sciences, University of Göttingen, Büsgenweg 3, 37077 Göttingen, Germany
| | - Johannes Signer
- Department of Wildlife Sciences, University of Göttingen, Büsgenweg 3, 37077 Göttingen, Germany
| | - Niko Balkenhol
- Department of Wildlife Sciences, University of Göttingen, Büsgenweg 3, 37077 Göttingen, Germany
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44
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Péron G, Fleming CH, de Paula RC, Calabrese JM. Uncovering periodic patterns of space use in animal tracking data with periodograms, including a new algorithm for the Lomb-Scargle periodogram and improved randomization tests. MOVEMENT ECOLOGY 2016; 4:19. [PMID: 27482382 PMCID: PMC4968009 DOI: 10.1186/s40462-016-0084-7] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2016] [Accepted: 06/18/2016] [Indexed: 05/21/2023]
Abstract
BACKGROUND Periodicity in activity level (rest/activity cycles) is ubiquitous in nature, but whether and how these periodicities translate into periodic patterns of space use by animals is much less documented. Here we introduce an analytical protocol based on the Lomb-Scargle periodogram (LSP) to facilitate exploration of animal tracking datasets for periodic patterns. The LSP accommodates missing observations and variation in the sampling intervals of the location time series. RESULTS We describe a new, fast algorithm to compute the LSP. The gain in speed compared to other R implementations of the LSP makes it tractable to analyze long datasets (>10(6) records). We also give a detailed primer on periodicity analysis, focusing on the specificities of movement data. In particular, we warn against the risk of flawed inference when the sampling schedule creates artefactual periodicities and we introduce a new statistical test of periodicity that accommodates temporally autocorrelated background noise. Applying our LSP-based analytical protocol to tracking data from three species revealed that an ungulate exhibited periodicity in its movement speed but not in its locations, that a central place-foraging seabird tracked moon phase, and that the movements of a range-resident canid included a daily patrolling component that was initially masked by the stochasticity of the movements. CONCLUSION The new, fast algorithm tailored for movement data analysis and now available in the R-package ctmm makes the LSP a convenient exploratory tool to detect periodic patterns in animal movement data.
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Affiliation(s)
- Guillaume Péron
- Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, VA 22630 USA
| | - Chris H. Fleming
- Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, VA 22630 USA
- Department of Biology, University of Maryland, College Park, MD 20742 USA
| | - Rogerio C. de Paula
- National Research Center for Carnivore Conservation (CENAP/ICMBio), Atibaia, Sao Paulo Brazil
| | - Justin M. Calabrese
- Smithsonian Conservation Biology Institute, National Zoological Park, Front Royal, VA 22630 USA
- Department of Biology, University of Maryland, College Park, MD 20742 USA
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45
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Blackwell PG, Niu M, Lambert MS, LaPoint SD. ExactBayesian inference for animal movement in continuous time. Methods Ecol Evol 2015. [DOI: 10.1111/2041-210x.12460] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Paul G. Blackwell
- School of Mathematics and Statistics University of Sheffield Hicks Building Hounsfield Road Sheffield S3 7RH UK
| | - Mu Niu
- School of Mathematics and Statistics University Gardens University of Glasgow Glasgow G12 8QW UK
| | - Mark S. Lambert
- National Wildlife Management Centre Animal and Plant Health Agency Sand Hutton York YO41 1LZ UK
| | - Scott D. LaPoint
- Department of Migration and Immuno‐ecology Max‐Planck‐Institute for Ornithology Am Obstberg 1 78315 Radolfzell Germany
- Department of Biology University of Konstanz Universitätsstraβe 10 78464 Konstanz Germany
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46
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Fleming CH, Fagan WF, Mueller T, Olson KA, Leimgruber P, Calabrese JM. Rigorous home range estimation with movement data: a new autocorrelated kernel density estimator. Ecology 2015; 96:1182-8. [PMID: 26236833 DOI: 10.1890/14-2010.1] [Citation(s) in RCA: 179] [Impact Index Per Article: 19.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Quantifying animals' home ranges is a key problem in ecology and has important conservation and wildlife management applications. Kernel density estimation (KDE) is a workhorse technique for range delineation problems that is both statistically efficient and nonparametric. KDE assumes that the data are independent and identically distributed (IID). However, animal tracking data, which are routinely used as inputs to KDEs, are inherently autocorrelated and violate this key assumption. As we demonstrate, using realistically autocorrelated data in conventional KDEs results in grossly underestimated home ranges. We further show that the performance of conventional KDEs actually degrades as data quality improves, because autocorrelation strength increases as movement paths become more finely resolved. To remedy these flaws with the traditional KDE method, we derive an autocorrelated KDE (AKDE) from first principles to use autocorrelated data, making it perfectly suited for movement data sets. We illustrate the vastly improved performance of AKDE using analytical arguments, relocation data from Mongolian gazelles, and simulations based upon the gazelle's observed movement process. By yielding better minimum area estimates for threatened wildlife populations, we believe that future widespread use of AKDE will have significant impact on ecology and conservation biology.
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47
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Gurarie E, Bracis C, Delgado M, Meckley TD, Kojola I, Wagner CM. What is the animal doing? Tools for exploring behavioural structure in animal movements. J Anim Ecol 2015; 85:69-84. [DOI: 10.1111/1365-2656.12379] [Citation(s) in RCA: 137] [Impact Index Per Article: 15.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2014] [Accepted: 04/07/2015] [Indexed: 11/29/2022]
Affiliation(s)
- Eliezer Gurarie
- Department of Biology University of Maryland College Park MD 20742 USA
- School of Environmental and Forest Sciences University of Washington Seattle WA 98195 USA
| | - Chloe Bracis
- Quantitative Ecology and Resource Management University of Washington Seattle WA 98195 USA
| | - Maria Delgado
- Department of Biosciences University of Helsinki 00014Helsinki Finland
- Research Unit of Biodiversity (UMIB, UO‐CSIC‐PA) Oviedo University – Campus Mieres 33600Mieres Spain
| | - Trevor D. Meckley
- Department of Fisheries and Wildlife Michigan State University East Lansing MI 48824 USA
| | - Ilpo Kojola
- Natural Resources Institute Box 16 FI‐96301Rovaniemi Finland
| | - C. Michael Wagner
- Department of Fisheries and Wildlife Michigan State University East Lansing MI 48824 USA
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48
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Fleming CH, Subaşı Y, Calabrese JM. Maximum-entropy description of animal movement. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2015; 91:032107. [PMID: 25871054 DOI: 10.1103/physreve.91.032107] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/07/2014] [Indexed: 05/08/2023]
Abstract
We introduce a class of maximum-entropy states that naturally includes within it all of the major continuous-time stochastic processes that have been applied to animal movement, including Brownian motion, Ornstein-Uhlenbeck motion, integrated Ornstein-Uhlenbeck motion, a recently discovered hybrid of the previous models, and a new model that describes central-place foraging. We are also able to predict a further hierarchy of new models that will emerge as data quality improves to better resolve the underlying continuity of animal movement. Finally, we also show that Langevin equations must obey a fluctuation-dissipation theorem to generate processes that fall from this class of maximum-entropy distributions when the constraints are purely kinematic.
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Affiliation(s)
- Chris H Fleming
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Rd., Front Royal, Virginia 22630, USA
- Department of Biology, University of Maryland, College Park, College Park, Maryland 20742, USA
| | - Yiğit Subaşı
- Department of Chemistry and Biochemistry, University of Maryland, College Park, College Park, Maryland 20742, USA
| | - Justin M Calabrese
- Conservation Ecology Center, Smithsonian Conservation Biology Institute, National Zoological Park, 1500 Remount Rd., Front Royal, Virginia 22630, USA
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