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Jebali A, Sanchez MR, Hanschen ER, Starkenburg SR, Corcoran AA. Trait drift in microalgae and applications for strain improvement. Biotechnol Adv 2022; 60:108034. [PMID: 36089253 DOI: 10.1016/j.biotechadv.2022.108034] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2022] [Revised: 08/06/2022] [Accepted: 09/05/2022] [Indexed: 11/29/2022]
Abstract
Microalgae are increasingly used to generate a wide range of commercial products, and there is growing evidence that microalgae-based products can be produced sustainably. However, industrial production of microalgal biomass is not as developed as other biomanufacturing platform technologies. In addition, results of bench-scale research often fail to translate to large-scale or mass production systems. This disconnect may result from trait drift and evolution occurring, through time, in response to unique drivers in each environment, such as cultivation regimes, weather, and pests. Moreover, outdoor and indoor cultivation of microalgae has the potential to impose negative selection pressures, which makes the maintenance of desired traits a challenge. In this context, this review sheds the light on our current understanding of trait drift and evolution in microalgae. We delineate the basics of phenotype plasticity and evolution, with a focus on how microalgae respond under various conditions. In addition, we review techniques that exploit phenotypic plasticity and evolution for strain improvement in view of industrial commercial applications, highlighting associated advantages and shortcomings. Finally, we suggest future research directions and recommendations to overcome unwanted trait drift and evolution in microalgae cultivation.
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Affiliation(s)
- Ahlem Jebali
- New Mexico Consortium, 4200 W. Jemez Road, Los Alamos, NM 87544, USA.
| | - Monica R Sanchez
- Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, NM 87545, USA
| | - Erik R Hanschen
- Los Alamos National Laboratory, P.O. Box 1663, Los Alamos, NM 87545, USA
| | | | - Alina A Corcoran
- New Mexico Consortium, 4200 W. Jemez Road, Los Alamos, NM 87544, USA
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2
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Shidemantle G, Buss N, Hua J. Are glucocorticoids good indicators of disturbance across populations that exhibit cryptic variation in contaminant tolerance? Anim Conserv 2021. [DOI: 10.1111/acv.12737] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- G. Shidemantle
- Biological Sciences Department Binghamton University (SUNY) Binghamton NY USA
| | - N. Buss
- Biological Sciences Department Binghamton University (SUNY) Binghamton NY USA
| | - J. Hua
- Biological Sciences Department Binghamton University (SUNY) Binghamton NY USA
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Shuman-Goodier ME, Singleton GR, Forsman AM, Hines S, Christodoulides N, Daniels KD, Propper CR. Developmental assays using invasive cane toads, Rhinella marina, reveal safety concerns of a common formulation of the rice herbicide, butachlor. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2021; 272:115955. [PMID: 33221087 PMCID: PMC7878340 DOI: 10.1016/j.envpol.2020.115955] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2020] [Revised: 10/26/2020] [Accepted: 10/27/2020] [Indexed: 06/11/2023]
Abstract
Identifying the adverse impacts of pesticide exposure is essential to guide regulations that are protective of wildlife and human health. Within rice ecosystems, amphibians are valuable indicators because pesticide applications coincide with sensitive reproductive and developmental life stages. We conducted two experiments using wild cane toads (Rhinella marina) to test 1) whether environmentally relevant exposure to a commercial formulation of butachlor, an acetanilide herbicide used extensively in rice, affects amphibian development and 2) whether cane toad tadpoles are capable of acclimatizing to sub-lethal exposure. First, we exposed wild cane toads to 0.002, 0.02, or 0.2 mg/L of butachlor (Machete EC), during distinct development stages (as eggs and hatchlings, as tadpoles, or continuously) for 12 days. Next, we exposed a subset of animals from the first experiment to a second, lethal concentration and examined survivorship. We found that cane toads exposed to butachlor developed slower and weighed less than controls, and that development of the thyroid gland was affected: exposed individuals had smaller thyroid glands and thyrocyte cells, and more individual follicles. Analyses of the transcriptome revealed that butachlor exposure resulted in downregulation of transcripts related to metabolic processes, anatomic structure development, immune system function, and response to stress. Last, we observed evidence of acclimatization, where animals exposed to butachlor early in life performed better than naïve animals during a second exposure. Our findings indicate that the commercial formulation of butachlor, Machete EC, causes thyroid endocrine disruption in vertebrates, and suggest that exposure in lowland irrigated rice fields presents a concern for wildlife and human health. Furthermore, we establish that developmental assays with cane toads can be used to screen for adverse effects of pesticides in rice fields.
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Affiliation(s)
- Molly E Shuman-Goodier
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, 86001, USA; International Rice Research Institute, Los Baños, Philippines.
| | - Grant R Singleton
- International Rice Research Institute, Los Baños, Philippines; Natural Resource Institute, University of Greenwich, Chatham Maritime, Kent, UK
| | - Anna M Forsman
- Department of Biology, University of Central Florida, Orlando, FL, 32816-2368, USA; Genomics and Bioinformatics Cluster, University of Central Florida, Orlando, FL, 32816-2368, USA
| | - Shyann Hines
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, 86001, USA
| | | | - Kevin D Daniels
- Department of Chemical and Environmental Engineering, University of Arizona, Tucson, AZ, 85721, USA
| | - Catherine R Propper
- Department of Biological Sciences, Northern Arizona University, Flagstaff, AZ, 86001, USA
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Levis NA, Fuller CG, Pfennig DW. An experimental investigation of how intraspecific competition and phenotypic plasticity can promote the evolution of novel, complex phenotypes. Biol J Linn Soc Lond 2020. [DOI: 10.1093/biolinnean/blaa095] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Abstract
Abstract
Intraspecific competition has long been considered a key driver of evolutionary diversification, but whether it can also promote evolutionary innovation is less clear. Here we examined the interplay between competition and phenotypic plasticity in fuelling the origins of a novel, complex phenotype – a distinctive carnivore morph found in spadefoot toad tadpoles (genus Spea) that specializes on fairy shrimp. We specifically sought to explore the possible origins of this phenotype by providing shrimp to Scaphiopus holbrookii tadpoles (the sister genus to Spea that does not produce carnivores) while subjecting them to competition for their standard diet of detritus. Previous research had shown that this species will eat shrimp when detritus is limited, and that these shrimp-fed individuals produce features that are redolent of a rudimentary Spea carnivore. In this study, we found that: (1) behavioural and morphological plasticity enabled some individuals to expand their diet to include shrimp; (2) there was heritable variation in this plasticity; and (3) individuals received a growth and development benefit by eating shrimp. Thus, novel resource use can arise via plasticity as an adaptive response to intraspecific competition. More generally, our results show how competition and plasticity may interact to pave the way for the evolution of complex, novel phenotypes, such as the distinctive carnivore morph in present-day Spea.
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Affiliation(s)
- Nicholas A Levis
- Department of Biology, CB#3280, University of North Carolina, Chapel Hill, NC, USA
| | - Carly G Fuller
- Department of Biology, CB#3280, University of North Carolina, Chapel Hill, NC, USA
| | - David W Pfennig
- Department of Biology, CB#3280, University of North Carolina, Chapel Hill, NC, USA
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Collyer ML, Davis MA, Adams DC. Making Heads or Tails of Combined Landmark Configurations in Geometric Morphometric Data. Evol Biol 2020. [DOI: 10.1007/s11692-020-09503-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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6
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Oke KB, Motivans E, Quinn TP, Hendry AP. Sexual dimorphism modifies habitat‐associated divergence: Evidence from beach and creek breeding sockeye salmon. J Evol Biol 2018; 32:227-242. [DOI: 10.1111/jeb.13407] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2018] [Revised: 11/17/2018] [Accepted: 11/20/2018] [Indexed: 12/13/2022]
Affiliation(s)
- Krista B. Oke
- Department of Biology and Redpath Museum McGill University Montreal Quebec Canada
- College of Fisheries and Ocean Sciences University of Alaska Fairbanks Juneau Alaska
| | - Elena Motivans
- Department of Biology and Redpath Museum McGill University Montreal Quebec Canada
- Helmholtz Centre for Environmental Research Leipzig Germany
| | - Thomas P. Quinn
- School of Aquatic and Fishery Sciences University of Washington Seattle Washington
| | - Andrew P. Hendry
- Department of Biology and Redpath Museum McGill University Montreal Quebec Canada
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Levis NA, Pfennig DW. Phenotypic plasticity, canalization, and the origins of novelty: Evidence and mechanisms from amphibians. Semin Cell Dev Biol 2018; 88:80-90. [PMID: 29408711 DOI: 10.1016/j.semcdb.2018.01.012] [Citation(s) in RCA: 42] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2017] [Revised: 01/25/2018] [Accepted: 01/29/2018] [Indexed: 12/20/2022]
Abstract
A growing number of biologists have begun asking whether environmentally induced phenotypic change--'phenotypic plasticity'--precedes and facilitates the origin and canalization of novel, complex phenotypes. However, such 'plasticity-first evolution' (PFE) remains controversial. Here, we summarize the PFE hypothesis and describe how it can be evaluated in natural systems. We then review the evidence for PFE from amphibians (a group in which phenotypic plasticity is especially widespread) and describe how phenotypic plasticity might have facilitated macroevolutionary change. Finally, we discuss what is known about the proximate mechanisms of PFE in amphibians. We close with suggestions for future research. As we describe, amphibians offer some of the best support for plasticity's role in the origin of evolutionary novelties.
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Affiliation(s)
- Nicholas A Levis
- Department of Biology, CB#3280, University of North Carolina, Chapel Hill, NC, 27599, USA
| | - David W Pfennig
- Department of Biology, CB#3280, University of North Carolina, Chapel Hill, NC, 27599, USA.
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Janssens L, Stoks R. Stronger effects of Roundup than its active ingredient glyphosate in damselfly larvae. AQUATIC TOXICOLOGY (AMSTERDAM, NETHERLANDS) 2017; 193:210-216. [PMID: 29100103 DOI: 10.1016/j.aquatox.2017.10.028] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2017] [Revised: 10/25/2017] [Accepted: 10/29/2017] [Indexed: 06/07/2023]
Abstract
Pesticides are causing strong decreases in aquatic biodiversity at concentrations assumed safe by legislation. One reason for the failing risk assessment may be strong differences in the toxicity of the active ingredient of pesticides and their commercial formulations. Sublethal effects, especially those on behaviour, have been largely ignored in this context, yet can be equally important as lethal effects at the population and ecosystem levels. Here, we compared the toxicity of the herbicide Roundup and its active ingredient glyphosate on survival, but also on ecologically relevant sublethal traits (life history, behaviour and physiology) in damselfly larvae. Roundup was more toxic than glyphosate with negative effects on survival, behaviour and most of the physiological traits being present at lower concentrations (food intake, escape swimming speed) or even only present (survival, sugar and total energy content and muscle mass) following Roundup exposure. This confirms the toxicity of the surfactant POEA. Notably, also glyphosate was not harmless: a realistic concentration of 2mg/l resulted in reduced growth rate, escape swimming speed and fat content. Our results therefore indicate that the toxicity of Roundup cannot be fully attributed to its surfactant, thereby suggesting that also the new generation of glyphosate-based herbicides with other mixtures of surfactants likely will have adverse effects on non-target aquatic organisms. Ecotoxicological studies comparing the toxicity of active ingredients and their commercial formulations typically ignore behaviour while the here observed differential effects on behaviour likely will negatively impact damselfly populations. Our data highlight that risk assessment of pesticides ignoring sublethal effects may contribute to the negative effects of pesticides on aquatic biodiversity.
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Affiliation(s)
- Lizanne Janssens
- Evolutionary Stress Ecology and Ecotoxicology, University of Leuven, Deberiotstraat 32, B-3000 Leuven, Belgium.
| | - Robby Stoks
- Evolutionary Stress Ecology and Ecotoxicology, University of Leuven, Deberiotstraat 32, B-3000 Leuven, Belgium
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