When more is more: taking advantage of species diversity to move towards sustainable aquaculture

Diversity, evolution, and emergence of fish viruses

The production of aquatic animals has more than doubled over the last 50 years and is anticipated to continually increase. While fish are recognized as a valuable and sustainable source of nutrition, particularly in the context of human population growth and climate change, the rapid expansion of aquaculture coincides with the emergence of highly pathogenic viruses that often spread globally through aquacultural practices. Here, we provide an overview of the fish virome and its relevance for disease emergence, with a focus on the insights gained through metagenomic sequencing, noting potential areas for future study. In particular, we describe the diversity and evolution of fish viruses, for which the majority have no known disease associations, and demonstrate how viruses emerge in fish populations, most notably at an expanding domestic-wild interface. We also show how wild fish are a powerful and tractable model system to study virus ecology and evolution more broadly and can be used to identify the major factors that shape vertebrate viromes. Central to this is a process of virus-host co-divergence that proceeds over many millions of years, combined with ongoing cross-species virus transmission.

Impact of duck stocking density on growth performance, digestive enzymes, blood biochemistry, and antioxidant capacity of the Labeo rohita reared in an integrated ponds system

This study investigated the effects of duck stocking density (SD) on growth performance, meat quality, hematology, serum metabolites, and antioxidant status of L. rohita reared in an integrated pond system. A total of 9000 fingerlings of L. rohita average weighing 150.5±1 grams were reared in nine ponds (n = 1000/pond) and randomly allotted one of three SDs under a completely randomized design. The stocking densities were 100 (SD-100), 150 (SD-150), and 200 (SD-200) ducks/pond and each group had three replicates. The final body weight, weight gain, and specific growth rates were greater (p<0.05) in SD-200 than in the rest of the treatments. The activities of proteases and amylase were also greater (p<0.05) for SD-200 than for the rest of the SD. However, hematological parameters like red blood cells, white blood cells, hematocrit, met hematocrit, and hemoglobin contents were not influenced (p>0.05) by SD in ponds. The serum total protein, albumin, globulin, creatinine, and glucose contents were also similar (p>0.05) across the ponds. However, blood urea nitrogen was higher (p<0.05) in SD-200 than in the rest of the SD. Moreover, alanine transaminase, aspartate transaminase, and alkaline phosphatase activities were linearly decreased (p<0.05) with increasing SD across the ponds. The changes in catalases and superoxide dismutase were non-significant (p>0.05) among the groups. However, glutathione peroxidase was greater for SD-200 than for the rest of the SD. The carcass compositional characteristics such as dry matter, protein, fat, and ash contents were not changed (p>0.05) by varying SD. In conclusion, SD over 200 birds/pond improved growth performance, digestive enzyme functions, and oxidative capacity without any negative impact on the hematology and carcass composition of L. rohita.

Consumer-driven nutrient recycling of freshwater decapods: Linking ecological theories and application in integrated multitrophic aquaculture

The Metabolic Theory of Ecology (MTE) and the Ecological Stoichiometry Theory (EST) are central and complementary in the consumer-driven recycling conceptual basis. The understanding of physiological processes of organisms is essential to explore and predict nutrient recycling behavior, and to design integrated productive systems that efficiently use the nutrient inputs through an adjusted mass balance. We fed with fish-feed three species of decapods (prawn, anomuran, crab) from different families and with aquacultural potential to explore the animal-mediated nutrient dynamic and its applicability in productive systems. We tested whether body mass, body elemental content, and feeds predict N and P excretion rates and ratios within taxa. We also verified if body content scales allometrically with body mass within taxa. Finally, we compared the nutrient excretion rates and body elemental content among taxa. N excretion rates of prawns and anomurans were negatively related to body mass, emphasizing the importance of MTE. Feed interacted with body mass to explain P excretion of anomurans and N excretion of crabs. Body C:N content positively scaled with body mass in prawns and crabs. Among taxa, prawns mineralised more N and N:P, and less P, and exhibited higher N and C body content (and lower C:N) than the other decapods. Body P and N:P content were different among all species. Body content and body mass were the main factors that explained the differences among taxa and influence the role of crustaceans as nutrient recyclers. These features should be considered to select complementary species that efficiently use feed resources. Prawns need more protein in feed and might be integrated with fish of higher N-requirements, in contrast to crabs and anomurans. Our study contributed to the background of MTE and EST through empirical data obtained from decapods and it provided insightful information to achieve more efficient aquaculture integration systems.

Dietary Inclusion of Halobacterium salinarum Modulates Growth Performances and Immune Responses in Farmed Gilthead Seabream (Sparus aurata L.)

The use of natural immunostimulants is considered the most promising alternative to promote fish health, productive performance and quality, increasing the aquaculture profitability, sustainability and social acceptance. The purpose of this study was to evaluate the effect of the integration of a potential probiotic strain, Halobacterium salinarum, belonging to the Archaea domain, in the formulated diets of farmed gilthead seabream (Sparus aurata L.) in terms of growth performances and immunity responses. The experiment was set up to test two different levels of inclusion of the bacteria in the diet: 0.05% (D1) and 0.1% (D2). The effects on fish growth performances; humoral (peroxidase, protease, antiprotease and IgM levels) and cellular immunity parameters (phagocytosis, respiratory burst and myeloperoxidase), along with bactericidal activity, were evaluated after 15 and 30 days of experimental feeding. The obtained results showed that the inclusion of H. salinarum at the highest concentration (D2 0.1%) improved growth performances, bactericidal activity against Vibrio anguillarum and some parameters related both to the humoral and cellular immune response, suggesting exploring other aspects of welfare in view of future supplementations of this probiotic strain in the diet of S. aurata.

Host Hybridization Dominates over Cohabitation in Affecting Gut Microbiota of Intrageneric Hybrid Takifugu Pufferfish

Microbial symbionts are of great importance for macroscopic life, including fish, and both collectively comprise an integrated biological entity known as the holobiont. Yet little is known as to how the normal balance within the fish holobiont is maintained and how it responds to biotic and/or abiotic influences. Here, through amplicon profiling, the genealogical relationship between artificial F1 hybrid pufferfish with growth heterosis, produced from crossing female Takifugu obscurus with male Takifugu rubripes and its maternal halfsibling purebred, was well recapitulated by their gut microbial community similarities, indicating an evident parallelism between host phylogeny (hybridity) and microbiota relationships therein. Interestingly, modest yet significant fish growth promotion and gut microbiota alteration mediated by hybrid-purebred cohabitation were observed, in comparison with their respective monoculture cohorts that share common genetic makeups, implying a certain degree of environmental influences. Moreover, the underlying assemblage patterns of gut microbial communities were found associated with a trade-off between variable selection and dispersal limitation, which are plausibly driven by the augmented social interactions between hybrid and purebred cohabitants differing in behaviors. Results from this study not only can enrich, from a microbial perspective, the sophisticated understanding of complex and dynamic assemblage of the fish holobiont, but will also provide deeper insights into the ecophysiological factors imposed on the diversity-function relationships thereof. Our findings emphasize the intimate associations of gut microbiota in host genetics-environmental interactions and would have deeper practical implications for microbial contributions to optimize performance prediction and to improve the production of farmed fishes. IMPORTANCE Microbial symbionts are of great importance for macroscopic life, including fish, and yet little is known as to how the normal balance within the fish holobiont is maintained and how it responds to the biotic and/or abiotic influences. Through gut microbiota profiling, we show that host intrageneric hybridization and cohabitation can impose a strong disturbance upon pufferfish gut microbiota. Moreover, marked alterations in the composition and function of gut microbiota in both hybrid and purebred pufferfish cohabitants were observed, which are potentially correlated with different metabolic priorities and behaviors between host genealogy. These results can enrich, from a microbial perspective, the sophisticated understanding of the complex and dynamic assemblage of the fish holobiont and would have deeper practical implications for microbial contributions to optimize performance prediction and to improve farmed fish production.

Heavy Metal Pollution in Aquaculture: Sources, Impacts and Mitigation Techniques

Aquaculture is one of the fastest growing agro-industries as it presently accounts for nearly 50% of all fish for direct human consumption and 43% of total seafood supply. Fish provide about 20% average daily intake of animal protein for about 3.2 billion people globally. The treatment of aquaculture in recent years for the mitigation of heavy metals and other contaminants has been gaining traction due to the benefits of aquaculture to both man and the environment. This paper provides a review of the sources, impacts, and the various methods that have been deployed in recent years by various researchers for the treatment of heavy metal contaminated aquaculture. Related works of literature were obtained and compiled from academic search databases and were carefully analysed in this study. The dangers these metals pose to the sustainability of aquaculture were studied in this review. Studies indicate that some heavy metals, such as mercury, lead, and cadmium, due to their long-term persistence in the environment, allow them to accumulate in the food chain. Mitigation techniques such as adsorption, bio-sorption, and phytoremediation have been deployed for the treatment of heavy metal contaminated aquaculture. Some research gaps were also highlighted which could form the basis for future research, such as research centred on the effects of these metals on the embryonic development of aquaculture organisms and the alterations the metals caused in their stages of development.

Integrated multitrophic aquaculture (IMTA) as an environmentally friendly system for sustainable aquaculture: functionality, species, and application of biofloc technology (BFT)

Aquaculture is one of the fastest-growing industries in the world, and its prominent role has been proven in supplying food for the growing world population. The expected growth of aquaculture requires the development of responsible and sustainable approaches, technologies, culture systems, and practices. The integrated multitrophic aquaculture (IMTA) system has been developed over the past decades. This system is based on the use of all food levels for simultaneous production of some aquaculturally species in a way that contributes to environmental sustainability (biocontrol), economic stability (product diversity and risk reduction), and social acceptance (better management operations). In IMTA, selecting suitable culture species and considering their appropriate population size is absolutely necessary to achieve an optimal biological and chemical process, improving the ecosystem health and sustainability of the industry. Biofloc technology (BFT) is closely related to the IMTA system, where the IMTA potential can be used to control suspended solids in aquaculture systems with limited water exchange. This study reviews the significance of IMTA systems, potential target species for cultivation, the relationship between BFT and IMTA, total suspended solids control, the economics of IMTA farming, and the recent findings in these fields.

Finding the Best Match: A Ranking Procedure of Fish Species Combinations for Polyculture Development

Polyculture is a potentially interesting rearing practice for future aquaculture developments. Nevertheless, it may result in beneficial as well as detrimental consequences for fish production. One way to maximize the benefits of polyculture is to combine species with high levels of compatibility and complementarity. This requires the development of a ranking procedure, based on a multi-trait assessment, that highlights the most suitable species combinations for polyculture. Moreover, in order to ensure the relevance of such a procedure, it is important to integrate the socio-economic expectations by assigning relative weights to each trait according to the stakeholder priorities. Here, we proposed a ranking procedure of candidate fish polycultures (i.e., species combinations that could be potentially interesting for aquaculture) based on a multi-trait assessment approach and the stakeholder priorities. This procedure aims at successively (i) weighting evaluation results obtained for each candidate polyculture according to stakeholder priorities; (ii) assessing differentiation between candidate species combinations based on these weighted results; and (iii) ranking differentiated candidate polycultures. We applied our procedure on three test cases of fish polycultures in recirculated aquaculture systems. These test cases each focused on a target species (two on Sander lucioperca and one on Carassius auratus), which were reared in two or three different alternative candidate fish polycultures. For each test case, our procedure aimed at ranking alternative combinations according to their benefits for production and/or welfare of the target species. These benefits were evaluated based on survival rate as well as morphology, behavioral, and physiological traits. Three scenarios of stakeholder priorities were considered for weighting evaluation results: placing a premium on production, welfare, or both for the target species. A comparison of our procedure results between these scenarios showed that the ranking changed for candidate polycultures in two test cases. This highlights the need to carefully consider stakeholder priorities when choosing fish polycultures.

AquaDesign: A tool to assist aquaculture production design based on abiotic requirements of animal species

Farming new species and promoting polyculture can enhance aquaculture sustainability. This implies to define the rearing conditions that meet the ecological requirements of a target species and/or to assess if different species can live in the same farming environment. However, there is a large number of rearing conditions and/or taxon combinations that can be considered. In order to minimise cumbersome and expensive empirical trials to explore all possibilities, we introduce a tool, AquaDesign. It is based on a R-script and package which help to determine farming conditions that are most likely suitable for species through in silico assessment. We estimate farming conditions potentially suitable for an aquatic organism by considering the species niche. We define the species n-dimensional niche hypervolume using a correlative approach in which the species niche is estimated by relating distribution data to environmental conditions. Required input datasets are mined from several public databases. The assistant tool allows users to highlight (i) abiotic conditions that are most likely suitable for species and (ii) combinations of species potentially able to live in the same abiotic environment. Moreover, it offers the possibility to assess if a particular set of abiotic conditions or a given farming location is potentially suitable for the monoculture or the polyculture of species of interest. Our tool provides useful pieces of information to develop freshwater aquacultures. Using the large amount of biogeographic and abiotic information available in public databases allows us to propose a pragmatic and operational tool even for species for which abiotic requirements are poorly or not available in literature such as currently non-produced species. Overall, we argue that the assistant tool can act as a stepping stone to promote new aquatic productions which are required to enhance aquaculture sustainability.

An Integrated Monitoring Approach to the Evaluation of the Environmental Impact of an Inshore Mariculture Plant (Mar Grande of Taranto, Ionian Sea)

The results of an ex-ante survey aiming to assess the impact of a fish farm in the Mar Grande of Taranto (southern Italy, Mediterranean Sea) on the surrounding environment are reported. There, the implementation of an innovative IMTA plant was planned, with the goals of environment bioremediation and commercially exploitable biomass production. Analyses were conducted in February and July 2018. Both seawater and sediments were sampled at the four corners of the fish farm to detect the existing biological and physico-chemical features. The investigation was performed to identify the best area of the farming plant for positioning the bioremediating system, but also to obtain a data baseline, to compare to the environmental status after the bioremediating action. Data were also analyzed by canonical analysis of principal coordinates (CAP). All the measurements, in particular, microbiology and macrobenthic community characterization using AZTI's Marine Biotic Index (AMBI) and the Multivariate-AMBI (M-AMBI) indices, suggest that the effect of fish farm waste was concentrated and limited to a small portion of the investigated area in relation to the direction of the main current. A site named A3, which was found to be the most impacted by the aquaculture activities, especially during the summer season, was chosen to place the bioremediation system.

Advantage of Species Diversification to Facilitate Sustainable Development of Aquaculture Sector

Simple Summary

The aquaculture sector must be well-founded to undergo robust growth and sustainable development in the years ahead. Species diversity must reflect species compatibility and complementarity to manage the complexity in polyculture systems. There is a need for the implementation of innovative strategies that facilitate sustainable aquaculture development, enhance profitability, improve resilience, and support conservation and environmental protection. An aquaculture development scenario must look beyond the economic profitability and strategize aquatic food production systems to attain food and nutrition security and benefits for all stakeholders.

Abstract

Intensified agrochemical-based monoculture systems worldwide are under adoption to meet the challenge of human population growth and the ever-growing global demand for food. However, this path has been opposed and criticized because it involves overexploitation of land, monoculture of few species, excessive input of agrochemicals, and adverse impacts on human health and the environment. The wide diversity among polyculture systems practiced across the globe has created confusion over the priority of a single strategy towards sustainable aquaculture development and safer products. Herein, we highlight the significance of polyculture and integrated aquaculture practices in conveying the successful transition of the aquaculture industry towards sustainable development. So far, the established thought is that the precise selection of aquatic species and a focus on compatible and complementary species combinations are supposed to facilitate rapid progress in food production with more profitability and sustainability. Therefore, the advantages of species diversification are discussed from an ecological perspective to enforce aquaculture expansion. This account asserts that a diverse range of aquaculture practices can promote synergies among farmed species, enhance system resilience, enable conservation, decrease ecological footprints, and provide social benefits such as diversified income and local food security.

Reuse and recycle: Integrating aquaculture and agricultural systems to increase production and reduce nutrient pollution

Integrated agriculture and aquaculture systems (IAAS) allow nutrients, energy, and water to flow throughout the components of the system, increasing the efficiency with which inputs are converted to food. Yet effectively designing an IAAS requires understanding how nutrients accumulate and alter the system's productivity. Here we developed a mechanistic model for nitrogen transport and utilization and parameterized it using the IAAS in He'eia, Hawai'i. Of note, we modeled tidal influence, which extends existing IAAS models that often assume aquaculture in tank enclosures. We simulated the impact of nitrogen loading from three possible land use scenarios across agriculture and development priorities on the productivity of the fishpond downstream. We projected that organic nitrogen and nitrate concentrations parallel the successive increases in nitrogen loading across management strategies. Autotroph and fish densities were predicted to follow similar trends in response to increased nitrogen availability, causing fish harvests to increase from the current land use (25 kg/ha) to the restored agriculture (35 kg/ha) and urban (50 kg/ha) alternatives. While fish harvests were predicted to be highest in the urban scenario, modeled caloric production in the restored scenario from agriculture and aquaculture would sustain 235 people (4.3 people/ha) in the He'eia IAAS, 16 and 125 times more than the current or urban land uses, respectively. Restoring diversified agriculture was also predicted to retain a larger proportion of nitrogen inputs (0.43) than urbanizing the region (0.30), which would reduce nitrogen export to the adjacent Kāne'ohe Bay. Several state variables were notably sensitive to tidal flux rates, highlighting the importance of incorporating tidal dynamics into a coastal IAAS model. This model provides valuable insights for the management of existing coastal IAAS and design of new IAAS in coastal regions to improve the sustainability of future food systems.