1
|
Horta-Lacueva QJB, Jónsson ZO, Thorholludottir DAV, Hallgrímsson B, Kapralova KH. Rapid and biased evolution of canalization during adaptive divergence revealed by dominance in gene expression variability during Arctic charr early development. Commun Biol 2023; 6:897. [PMID: 37652977 PMCID: PMC10471602 DOI: 10.1038/s42003-023-05264-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2022] [Accepted: 08/21/2023] [Indexed: 09/02/2023] Open
Abstract
Adaptive evolution may be influenced by canalization, the buffering of developmental processes from environmental and genetic perturbations, but how this occurs is poorly understood. Here, we explore how gene expression variability evolves in diverging and hybridizing populations, by focusing on the Arctic charr (Salvelinus alpinus) of Thingvallavatn, a classic case of divergence between feeding habitats. We report distinct profiles of gene expression variance for both coding RNAs and microRNAs between the offspring of two contrasting morphs (benthic/limnetic) and their hybrids reared in common conditions and sampled at two key points of cranial development. Gene expression variance in the hybrids is substantially affected by maternal effects, and many genes show biased expression variance toward the limnetic morph. This suggests that canalization, as inferred by gene expression variance, can rapidly diverge in sympatry through multiple gene pathways, which are associated with dominance patterns possibly biasing evolutionary trajectories and mitigating the effects of hybridization on adaptive evolution.
Collapse
Affiliation(s)
- Quentin Jean-Baptiste Horta-Lacueva
- Institute of Life and Environmental Sciences, University of Iceland, Reykjavík, Iceland.
- Department of Biology, Lund University, Lund, Sweden.
| | | | - Dagny A V Thorholludottir
- Institute of Life and Environmental Sciences, University of Iceland, Reykjavík, Iceland
- University of Veterinary Medicine Vienna, Institute of Population Genetics, Vienna, Austria
| | - Benedikt Hallgrímsson
- Department of Cell Biology and Anatomy, Alberta Children's Hospital Research Institute, University of Calgary, Calgary, Alberta, Canada
| | - Kalina Hristova Kapralova
- Institute of Life and Environmental Sciences, University of Iceland, Reykjavík, Iceland.
- The Institute for Experimental Pathology at Keldur, University of Iceland, Reykjavík, Iceland.
| |
Collapse
|
2
|
Beck SV, Räsänen K, Kristjánsson BK, Skúlason S, Jónsson ZO, Tsinganis M, Leblanc CA. Variation in egg size and offspring phenotype among and within seven Arctic charr morphs. Ecol Evol 2022; 12:e9427. [PMID: 36267683 PMCID: PMC9577412 DOI: 10.1002/ece3.9427] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2022] [Revised: 08/07/2022] [Accepted: 09/27/2022] [Indexed: 11/07/2022] Open
Abstract
Maternal effects have the potential to alter early developmental processes of offspring and contribute to adaptive diversification. Egg size is a major contributor to offspring phenotype, which can influence developmental trajectories and potential resource use. However, to what extent intraspecific variation in egg size facilitates evolution of resource polymorphism is poorly understood. We studied multiple resource morphs of Icelandic Arctic charr, ranging from an anadromous morph-with a phenotype similar to the proposed ancestral phenotype-to sympatric morphs that vary in their degree of phenotypic divergence from the ancestral anadromous morph. We characterized variation in egg size and tested whether egg size influenced offspring phenotype at early life stages (i.e., timing of- and size at- hatching and first feeding [FF]). We predicted that egg size would differ among morphs and be less variable as morphs diverge away from the ancestral anadromous phenotype. We also predicted that egg size would correlate with offspring size and developmental timing. We found morphs had different egg size, developmental timing, and size at hatching and FF. Egg size increased as phenotypic proximity to the ancestral anadromous phenotype decreased, with larger eggs generally giving rise to larger offspring, especially at FF, but egg size had no effect on developmental rate. The interaction between egg size and the environment may have a profound impact on offspring fitness, where the resulting differences in early life-history traits may act to initiate and/or maintain resource morphs diversification.
Collapse
Affiliation(s)
- Samantha V. Beck
- Department of Aquaculture and Fish BiologyHólar UniversitySauðárkrókurIceland,Institute of Life and Environmental SciencesUniversity of IcelandReykjavíkIceland
| | - Katja Räsänen
- Department of Aquatic EcologyEawag, Swiss Federal Institute of Aquatic Science and TechnologyDübendorfSwitzerland,Department of Biology and Environmental ScienceUniversity of JyväskyläJyväskyläFinland
| | | | - Skúli Skúlason
- Department of Aquaculture and Fish BiologyHólar UniversitySauðárkrókurIceland,Icelandic Museum of Natural HistoryReykjavíkIceland
| | - Zophonías O. Jónsson
- Institute of Life and Environmental SciencesUniversity of IcelandReykjavíkIceland
| | - Markos Tsinganis
- Department of Aquatic EcologyEawag, Swiss Federal Institute of Aquatic Science and TechnologyDübendorfSwitzerland
| | - Camille A. Leblanc
- Department of Aquaculture and Fish BiologyHólar UniversitySauðárkrókurIceland
| |
Collapse
|
3
|
Matlosz S, Sigurgeirsson B, Franzdóttir SR, Pálsson A, Jónsson ZO. DNA methylation differences during development distinguish sympatric morphs of Arctic charr (Salvelinus alpinus). Mol Ecol 2022; 31:4739-4761. [PMID: 35848921 DOI: 10.1111/mec.16620] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Revised: 06/13/2022] [Accepted: 07/04/2022] [Indexed: 11/29/2022]
Abstract
Changes in DNA methylation in specific coding or non-coding regions can influence development and potentially divergence in traits within species and groups. While the impact of epigenetic variation on developmental pathways associated with evolutionary divergence is the focus of intense investigation, few studies have looked at recently diverged systems. Phenotypic diversity between closely related populations of Arctic charr (Salvelinus alpinus), which diverged within the last 10 000 years, offers an interesting ecological model to address such effects. Using bisulfite sequencing, we studied general DNA methylation patterns during development in the four sympatric morphs of Arctic charr from Lake Thingvallavatn. The data revealed strong differences between developmental timepoints and between morphs (mainly along the benthic - limnetic axis), both at single CpG sites and in 1,000bp-regions. Genes located close to differentially methylated CpG sites were involved in nucleosome assembly, regulation of osteoclast differentiation, and cell-matrix adhesion. Differentially methylated regions were enriched in tRNA and rRNA sequences, and half of them were located close to transcription start sites. The expression of 14 genes showing methylation differences over time or between morphs was further investigated by qPCR and nine of these were found to be differentially expressed between morphs. Four genes (ARHGEF37-like, H3-like, MPP3 and MEGF9) showed a correlation between methylation and expression. Lastly, histone gene clusters displayed interesting methylation differences between timepoints and morphs, as well as intragenic methylation variation. The results presented here provide a motivation for further studies on the contribution of epigenetic traits, such as DNA methylation, to phenotypic diversity and developmental mechanisms.
Collapse
Affiliation(s)
- Sebastien Matlosz
- Institute of Life and Environmental Sciences, University of Iceland, Reykjavík, Iceland
| | | | | | - Arnar Pálsson
- Institute of Life and Environmental Sciences, University of Iceland, Reykjavík, Iceland
| | - Zophonías O Jónsson
- Institute of Life and Environmental Sciences, University of Iceland, Reykjavík, Iceland
| |
Collapse
|
4
|
Karvonen A, Beck SV, Skúlason S, Kristjánsson BK, Leblanc CA. Variation in parasite resistance of Arctic charr, Salvelinus alpinus, between and within sympatric morphs. Ecol Evol 2021; 11:14024-14032. [PMID: 34707836 PMCID: PMC8525083 DOI: 10.1002/ece3.8109] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 08/26/2021] [Accepted: 08/27/2021] [Indexed: 11/08/2022] Open
Abstract
Genetic variation in resistance against parasite infections is a predominant feature in host-parasite systems. However, mechanisms maintaining genetic polymorphism in resistance in natural host populations are generally poorly known. We explored whether differences in natural infection pressure between resource-based morphs of Arctic charr (Salvelinus alpinus) have resulted in differentiation in resistance profiles. We experimentally exposed offspring of two morphs from Lake Þingvallavatn (Iceland), the pelagic planktivorous charr ("murta") and the large benthivorous charr ("kuðungableikja"), to their common parasite, eye fluke Diplostomum baeri, infecting the eye humor. We found that there were no differences in resistance between the morphs, but clear differences among families within each morph. Moreover, we found suggestive evidence of resistance of offspring within families being positively correlated with the parasite load of the father, but not with that of the mother. Our results suggest that the inherited basis of parasite resistance in this system is likely to be related to variation among host individuals within each morph rather than ecological factors driving divergent resistance profiles at morph level. Overall, this may have implications for evolution of resistance through processes such as sexual selection.
Collapse
Affiliation(s)
- Anssi Karvonen
- Department of Biological and Environmental ScienceUniversity of JyvaskylaJyvaskylaFinland
| | - Samantha V. Beck
- Department of Aquaculture and Fish BiologyHólar UniversitySauðárkrókurIceland
- Galloway Fisheries TrustNewton StewartScotland
| | - Skúli Skúlason
- Department of Aquaculture and Fish BiologyHólar UniversitySauðárkrókurIceland
| | | | - Camille A. Leblanc
- Department of Aquaculture and Fish BiologyHólar UniversitySauðárkrókurIceland
| |
Collapse
|
5
|
Horta-Lacueva QJB, Snorrason SS, Morrissey MB, Leblanc CAL, Kapralova KH. Multivariate analysis of morphology, behaviour, growth and developmental timing in hybrids brings new insights into the divergence of sympatric Arctic charr morphs. BMC Ecol Evol 2021; 21:170. [PMID: 34493202 PMCID: PMC8422654 DOI: 10.1186/s12862-021-01904-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2021] [Accepted: 08/18/2021] [Indexed: 11/16/2022] Open
Abstract
BACKGROUND Studying the development of fitness related traits in hybrids from populations diverging in sympatry is a fundamental approach to understand the processes of speciation. However, such traits are often affected by covariance structures that complicate the comprehension of these processes, especially because the interactive relationships between traits of different nature (e.g. morphology, behaviour, life-history) remain largely unknown in this context. In a common garden setup, we conducted an extensive examination of a large suit of traits putatively involved in the divergence of two morphs of Arctic charr (Salvelinus alpinus), and investigated the consequences of potential patterns of trait covariance on the phenotype of their hybrids. These traits were measured along ontogeny and involved growth, yolk sac resorption, developmental timing (hatching and the onset of exogeneous feeding), head morphology and feeding behaviour. RESULTS Growth trajectories provided the strongest signal of phenotypic divergence between the two charr. Strikingly, the first-generation hybrids did not show intermediate nor delayed growth but were similar to the smallest morph, suggesting parental biases in the inheritance of growth patterns. However, we did not observe extensive multivariate trait differences between the two morphs and their hybrids. Growth was linked to head morphology (suggesting that morphological variations in early juveniles relate to simple allometric effects) but this was the only strong signal of covariance observed between all the measured traits. Furthermore, we did not report evidence for differences in overall phenotypic variance between morphs, nor for enhanced phenotypic variability in their hybrids. CONCLUSION Our study shed light on the multivariate aspect of development in a context of adaptive divergence. The lack of evidence for the integration of most traits into a single covariance structure suggested that phenotypic constraints may not always favour nor impede divergence toward ecological niches differing in numerous physical and ecological variables, as observed in the respective habitats of the two charr. Likewise, the role of hybridization as a disruptive agent of trait covariance may not necessarily be significant in the evolution of populations undergoing resource polymorphism.
Collapse
Affiliation(s)
- Quentin J-B Horta-Lacueva
- Institute of Life and Environmental Sciences, University of Iceland, Askja - Náttúrufræðihús, Sturlugötu 7, 102, Reykjavík, Iceland.
| | - Sigurður S Snorrason
- Institute of Life and Environmental Sciences, University of Iceland, Askja - Náttúrufræðihús, Sturlugötu 7, 102, Reykjavík, Iceland
| | - Michael B Morrissey
- School of Biology, University of St Andrews, Sir Harold Mitchell Building, Greenside Place, St Andrews, UK
| | - Camille A-L Leblanc
- Department of Aquaculture and Fish Biology, Hólar University, Háeyri 1, 550, Sauðárkrókur, Iceland
| | - Kalina H Kapralova
- Institute of Life and Environmental Sciences, University of Iceland, Askja - Náttúrufræðihús, Sturlugötu 7, 102, Reykjavík, Iceland
| |
Collapse
|
6
|
Luo W, Zhou Y, Wang J, Yu X, Tong J. Identifying Candidate Genes Involved in the Regulation of Early Growth Using Full-Length Transcriptome and RNA-Seq Analyses of Frontal and Parietal Bones and Vertebral Bones in Bighead Carp ( Hypophthalmichthys nobilis). Front Genet 2021; 11:603454. [PMID: 33519908 PMCID: PMC7844397 DOI: 10.3389/fgene.2020.603454] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2020] [Accepted: 12/14/2020] [Indexed: 12/23/2022] Open
Abstract
Growth, one of the most important traits monitored in domestic animals, is essentially associated with bone development. To date, no large-scale transcriptome studies investigating bone development in bighead carp have been reported. In this study, we applied Isoform-sequencing technology to uncover the entire transcriptomic landscape of the bighead carp (Hypophthalmichthys nobilis) in early growth stage, and obtained 63,873 non-redundant transcripts, 20,907 long non-coding RNAs, and 1,579 transcription factors. A total of 381 alternative splicing events were seen in the frontal and parietal bones with another 784 events simultaneously observed in the vertebral bones. Coupling this to RNA sequencing (RNA-seq) data, we identified 27 differentially expressed unigenes (DEGs) in the frontal and parietal bones and 45 DEGs in the vertebral bones in the fast-growing group of fish, when compared to the slow-growing group of fish. Finally, 15 key pathways and 20 key DEGs were identified and found to be involved in regulation of early growth such as energy metabolism, immune function, and cytoskeleton function and important cellular pathways such as the arginine and proline metabolic pathway (p4ha1), FoxO signaling pathway (sgk1), cell adhesion molecules (b2m, ptprc, and mhcII), and peroxisome proliferator-activated receptor signaling pathway (scd). We established a novel full-length transcriptome resource and combined it with RNA-seq to elucidate the mechanism of genetic regulation of differential growth in bighead carp. The key DEGs identified in this study could fuel further studies investigating associations between growth and bone development and serve as a source of potential candidate genes for marker-assisted breeding programs.
Collapse
Affiliation(s)
- Weiwei Luo
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, The Innovation Academy of Seed Design, Chinese Academy of Sciences, Wuhan, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Ying Zhou
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, The Innovation Academy of Seed Design, Chinese Academy of Sciences, Wuhan, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Junru Wang
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, The Innovation Academy of Seed Design, Chinese Academy of Sciences, Wuhan, China
- College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing, China
| | - Xiaomu Yu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, The Innovation Academy of Seed Design, Chinese Academy of Sciences, Wuhan, China
| | - Jingou Tong
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, The Innovation Academy of Seed Design, Chinese Academy of Sciences, Wuhan, China
| |
Collapse
|
7
|
Beck SV, Räsänen K, Leblanc CA, Skúlason S, Jónsson ZO, Kristjánsson BK. Differences among families in craniofacial shape at early life-stages of Arctic charr (Salvelinus alpinus). BMC DEVELOPMENTAL BIOLOGY 2020; 20:21. [PMID: 33106153 PMCID: PMC7586659 DOI: 10.1186/s12861-020-00226-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/22/2020] [Accepted: 10/15/2020] [Indexed: 11/10/2022]
Abstract
BACKGROUND Organismal fitness can be determined at early life-stages, but phenotypic variation at early life-stages is rarely considered in studies on evolutionary diversification. The trophic apparatus has been shown to contribute to sympatric resource-mediated divergence in several taxa. However, processes underlying diversification in trophic traits are poorly understood. Using phenotypically variable Icelandic Arctic charr (Salvelinus alpinus), we reared offspring from multiple families under standardized laboratory conditions and tested to what extent family (i.e. direct genetic and maternal effects) contributes to offspring morphology at hatching (H) and first feeding (FF). To understand the underlying mechanisms behind early life-stage variation in morphology, we examined how craniofacial shape varied according to family, offspring size, egg size and candidate gene expression. RESULTS Craniofacial shape (i.e. the Meckel's cartilage and hyoid arch) was more variable between families than within families both across and within developmental stages. Differences in craniofacial morphology between developmental stages correlated with offspring size, whilst within developmental stages only shape at FF correlated with offspring size, as well as female mean egg size. Larger offspring and offspring from females with larger eggs consistently had a wider hyoid arch and contracted Meckel's cartilage in comparison to smaller offspring. CONCLUSIONS This study provides evidence for family-level variation in early life-stage trophic morphology, indicating the potential for parental effects to facilitate resource polymorphism.
Collapse
Affiliation(s)
- Samantha V Beck
- Department of Aquaculture and Fish Biology, Hólar University, 551, Sauðárkrókur, Iceland. .,Institute of Life- and Environmental Sciences, University of Iceland, Reykjavík, Iceland. .,The Rivers and Lochs Institute, University of the Highlands and Islands, Inverness, UK.
| | - Katja Räsänen
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland.,Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland
| | - Camille A Leblanc
- Department of Aquaculture and Fish Biology, Hólar University, 551, Sauðárkrókur, Iceland
| | - Skúli Skúlason
- Department of Aquaculture and Fish Biology, Hólar University, 551, Sauðárkrókur, Iceland
| | - Zophonías O Jónsson
- Institute of Life- and Environmental Sciences, University of Iceland, Reykjavík, Iceland
| | - Bjarni K Kristjánsson
- Department of Aquaculture and Fish Biology, Hólar University, 551, Sauðárkrókur, Iceland
| |
Collapse
|
8
|
Rahman MM, Biswas R, Gazi L, Arafat ST, Rahman MM, Asaduzzaman M, Rahman SM, Ahsan MN. Annually twice induced spawnings provide multiple benefits: Experimental evidence from an Indian major carp (
Catla catla
, Hamilton 1822). AQUACULTURE RESEARCH 2020; 51:2275-2290. [DOI: 10.1111/are.14572] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/09/2019] [Accepted: 02/07/2020] [Indexed: 09/27/2023]
Affiliation(s)
- Md. Moshiur Rahman
- Tokyo University of Marine Science and Technology Tokyo Japan
- Fisheries and Marine Resource Technology Discipline Khulna University Khulna Bangladesh
| | - Ripon Biswas
- Fisheries and Marine Resource Technology Discipline Khulna University Khulna Bangladesh
| | - Litan Gazi
- Fisheries and Marine Resource Technology Discipline Khulna University Khulna Bangladesh
| | - Shaikh Tareq Arafat
- Fisheries and Marine Resource Technology Discipline Khulna University Khulna Bangladesh
| | - Md. Mostafizur Rahman
- Department of Disaster and Human Security Management Bangladesh University of Professionals Dhaka Bangladesh
| | - Md. Asaduzzaman
- Department of Marine Bioresource Science Chattogram Veterinary and Animal Sciences University Chittagong Bangladesh
| | - Sheikh Mustafizur Rahman
- Fisheries and Marine Resource Technology Discipline Khulna University Khulna Bangladesh
- Fish Resources Research Center King Faisal University Hofuf Saudi Arabia
| | - Md. Nazmul Ahsan
- Fisheries and Marine Resource Technology Discipline Khulna University Khulna Bangladesh
| |
Collapse
|
9
|
Schneider K, Adams CE, Elmer KR. Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids. BMC Genomics 2019; 20:1010. [PMID: 31870285 PMCID: PMC6929470 DOI: 10.1186/s12864-019-6361-2] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2019] [Accepted: 12/01/2019] [Indexed: 12/11/2022] Open
Abstract
Background Salmonid fishes are characterised by a very high level of variation in trophic, ecological, physiological, and life history adaptations. Some salmonid taxa show exceptional potential for fast, within-lake diversification into morphologically and ecologically distinct variants, often in parallel; these are the lake-resident charr and whitefish (several species in the genera Salvelinus and Coregonus). To identify selection on genes and gene categories associated with such predictable diversifications, we analysed 2702 orthogroups (4.82 Mbp total; average 4.77 genes/orthogroup; average 1783 bp/orthogroup). We did so in two charr and two whitefish species and compared to five other salmonid lineages, which do not evolve in such ecologically predictable ways, and one non-salmonid outgroup. Results All selection analyses are based on Coregonus and Salvelinus compared to non-diversifying taxa. We found more orthogroups were affected by relaxed selection than intensified selection. Of those, 122 were under significant relaxed selection, with trends of an overrepresentation of serine family amino acid metabolism and transcriptional regulation, and significant enrichment of behaviour-associated gene functions. Seventy-eight orthogroups were under significant intensified selection and were enriched for signalling process and transcriptional regulation gene ontology terms and actin filament and lipid metabolism gene sets. Ninety-two orthogroups were under diversifying/positive selection. These were enriched for signal transduction, transmembrane transport, and pyruvate metabolism gene ontology terms and often contained genes involved in transcriptional regulation and development. Several orthogroups showed signs of multiple types of selection. For example, orthogroups under relaxed and diversifying selection contained genes such as ap1m2, involved in immunity and development, and slc6a8, playing an important role in muscle and brain creatine uptake. Orthogroups under intensified and diversifying selection were also found, such as genes syn3, with a role in neural processes, and ctsk, involved in bone remodelling. Conclusions Our approach pinpointed relevant genomic targets by distinguishing among different kinds of selection. We found that relaxed, intensified, and diversifying selection affect orthogroups and gene functions of ecological relevance in salmonids. Because they were found consistently and robustly across charr and whitefish and not other salmonid lineages, we propose these genes have a potential role in the replicated ecological diversifications.
Collapse
Affiliation(s)
- Kevin Schneider
- Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK
| | - Colin E Adams
- Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK.,Scottish Centre for Ecology and the Natural Environment, University of Glasgow, Rowardennan, G63 0AW, UK
| | - Kathryn R Elmer
- Institute of Biodiversity, Animal Health & Comparative Medicine, College of Medical, Veterinary & Life Sciences, University of Glasgow, Glasgow, G12 8QQ, UK.
| |
Collapse
|
10
|
Skúlason S, Parsons KJ, Svanbäck R, Räsänen K, Ferguson MM, Adams CE, Amundsen P, Bartels P, Bean CW, Boughman JW, Englund G, Guðbrandsson J, Hooker OE, Hudson AG, Kahilainen KK, Knudsen R, Kristjánsson BK, Leblanc CA, Jónsson Z, Öhlund G, Smith C, Snorrason SS. A way forward with eco evo devo: an extended theory of resource polymorphism with postglacial fishes as model systems. Biol Rev Camb Philos Soc 2019; 94:1786-1808. [PMID: 31215138 PMCID: PMC6852119 DOI: 10.1111/brv.12534] [Citation(s) in RCA: 47] [Impact Index Per Article: 9.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2018] [Revised: 05/12/2019] [Accepted: 05/20/2019] [Indexed: 12/16/2022]
Abstract
A major goal of evolutionary science is to understand how biological diversity is generated and altered. Despite considerable advances, we still have limited insight into how phenotypic variation arises and is sorted by natural selection. Here we argue that an integrated view, which merges ecology, evolution and developmental biology (eco evo devo) on an equal footing, is needed to understand the multifaceted role of the environment in simultaneously determining the development of the phenotype and the nature of the selective environment, and how organisms in turn affect the environment through eco evo and eco devo feedbacks. To illustrate the usefulness of an integrated eco evo devo perspective, we connect it with the theory of resource polymorphism (i.e. the phenotypic and genetic diversification that occurs in response to variation in available resources). In so doing, we highlight fishes from recently glaciated freshwater systems as exceptionally well-suited model systems for testing predictions of an eco evo devo framework in studies of diversification. Studies on these fishes show that intraspecific diversity can evolve rapidly, and that this process is jointly facilitated by (i) the availability of diverse environments promoting divergent natural selection; (ii) dynamic developmental processes sensitive to environmental and genetic signals; and (iii) eco evo and eco devo feedbacks influencing the selective and developmental environments of the phenotype. We highlight empirical examples and present a conceptual model for the generation of resource polymorphism - emphasizing eco evo devo, and identify current gaps in knowledge.
Collapse
Affiliation(s)
- Skúli Skúlason
- Department of Aquaculture and Fish BiologyHólar UniversitySauðárkrókur, 551Iceland
- Icelandic Museum of Natural History, Brynjólfsgata 5ReykjavíkIS‐107Iceland
| | - Kevin J. Parsons
- Institute of Biodiversity, Animal Health & Comparative MedicineUniversity of GlasgowGlasgow, G12 8QQU.K.
| | - Richard Svanbäck
- Animal Ecology, Department of Ecology and Genetics, Science for Life LaboratoryUppsala University, Norbyvägen 18DUppsala, SE‐752 36Sweden
| | - Katja Räsänen
- Department of Aquatic EcologyEAWAG, Swiss Federal Institute of Aquatic Science and Technology, and Institute of Integrative Biology, ETH‐Zurich, Ueberlandstrasse 133CH‐8600DübendorfSwitzerland
| | - Moira M. Ferguson
- Department of Integrative BiologyUniversity of GuelphGuelph, Ontario N1G 2W1Canada
| | - Colin E. Adams
- Scottish Centre for Ecology and the Natural Environment, IBAHCMUniversity of GlasgowGlasgow G12 8QQU.K.
| | - Per‐Arne Amundsen
- Freshwater Ecology Group, Department of Arctic and Marine Biology, Faculty of Biosciences, Fisheries and EconomicsUniversity of TromsöTromsö, N‐9037Norway
| | - Pia Bartels
- Department of Ecology and Environmental ScienceUmeå UniversityUmeå, SE‐90187Sweden
| | - Colin W. Bean
- Scottish Natural Heritage, Caspian House, Mariner Court, Clydebank Business ParkClydebank, G81 2NRU.K.
| | - Janette W. Boughman
- Department of Integrative BiologyMichigan State UniversityEast Lansing, MI 48824U.S.A.
| | - Göran Englund
- Department of Ecology and Environmental ScienceUmeå UniversityUmeå, SE‐90187Sweden
| | - Jóhannes Guðbrandsson
- Institute of Life and Environmental SciencesUniversity of IcelandReykjavik, 101Iceland
| | | | - Alan G. Hudson
- Department of Ecology and Environmental ScienceUmeå UniversityUmeå, SE‐90187Sweden
| | - Kimmo K. Kahilainen
- Inland Norway University of Applied Sciences, Department of Forestry and Wildlife Management, Campus Evenstad, Anne Evenstadvei 80Koppang, NO‐2480Norway
| | - Rune Knudsen
- Freshwater Ecology Group, Department of Arctic and Marine Biology, Faculty of Biosciences, Fisheries and EconomicsUniversity of TromsöTromsö, N‐9037Norway
| | | | - Camille A‐L. Leblanc
- Department of Aquaculture and Fish BiologyHólar UniversitySauðárkrókur, 551Iceland
| | - Zophonías Jónsson
- Institute of Life and Environmental SciencesUniversity of IcelandReykjavik, 101Iceland
| | - Gunnar Öhlund
- Department of Ecology and Environmental ScienceUmeå UniversityUmeå, SE‐90187Sweden
| | - Carl Smith
- School of BiologyUniversity of St Andrews, St. AndrewsFife, KY16 9AJU.K.
| | - Sigurður S. Snorrason
- Institute of Life and Environmental SciencesUniversity of IcelandReykjavik, 101Iceland
| |
Collapse
|
11
|
Ahi EP, Singh P, Lecaudey LA, Gessl W, Sturmbauer C. Maternal mRNA input of growth and stress-response-related genes in cichlids in relation to egg size and trophic specialization. EvoDevo 2018; 9:23. [PMID: 30519389 PMCID: PMC6271631 DOI: 10.1186/s13227-018-0112-3] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2018] [Accepted: 11/22/2018] [Indexed: 01/21/2023] Open
Abstract
BACKGROUND Egg size represents an important form of maternal effect determined by a complex interplay of long-term adaptation and short-term plasticity balancing egg size with brood size. Haplochromine cichlids are maternal mouthbrooders showing differential parental investment in different species, manifested in great variation in egg size, brood size and duration of maternal care. Little is known about maternally determined molecular characters of eggs in fishes and their relation to egg size and trophic specialization. Here we investigate maternal mRNA inputs of selected growth- and stress-related genes in eggs of mouthbrooding cichlid fishes adapted to different trophic niches from Lake Tanganyika, Lake Malawi, Lake Victoria and compare them to their riverine allies. RESULTS We first identified two reference genes, atf7ip and mid1ip1, to be suitable for cross-species quantification of mRNA abundance via qRT-PCR in the cichlid eggs. Using these reference genes, we found substantial variation in maternal mRNA input for a set of candidate genes related to growth and stress response across species and lakes. We observed negative correlation of mRNA abundance between two of growth hormone receptor paralogs (ghr1 and ghr2) across all haplochromine cichlid species which also differentiate the species in the two younger lakes, Malawi and Lake Victoria, from those in Lake Tanganyika and ancestral riverine species. Furthermore, we found correlations between egg size and maternal mRNA abundance of two growth-related genes igf2 and ghr2 across the haplochromine cichlids as well as distinct clustering of the species based on their trophic specialization using maternal mRNA abundance of five genes (ghr1, ghr2, igf2, gr and sgk1). CONCLUSIONS These findings indicate that variations in egg size in closely related cichlid species can be linked to differences in maternal RNA deposition of key growth-related genes. In addition, the cichlid species with contrasting trophic specialization deposit different levels of maternal mRNAs in their eggs for particular growth-related genes; however, it is unclear whether such differences contribute to differential morphogenesis at later stages of development. Our results provide first insights into this aspect of gene activation, as a basis for future studies targeting their role during ecomorphological specialization and adaptive radiation.
Collapse
Affiliation(s)
- Ehsan Pashay Ahi
- Institute of Biology, University of Graz, Universitätsplatz 2, 8010 Graz, Austria
- Evolutionary Biology Centre, Uppsala University, Norbyvägen 18A, 75236 Uppsala, Sweden
| | - Pooja Singh
- Institute of Biology, University of Graz, Universitätsplatz 2, 8010 Graz, Austria
| | | | - Wolfgang Gessl
- Institute of Biology, University of Graz, Universitätsplatz 2, 8010 Graz, Austria
| | - Christian Sturmbauer
- Institute of Biology, University of Graz, Universitätsplatz 2, 8010 Graz, Austria
| |
Collapse
|