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For: Rodríguez-Verdugo A, Vulin C, Ackermann M. The rate of environmental fluctuations shapes ecological dynamics in a two-species microbial system. Ecol Lett 2019;22:838-846. [PMID: 30790416 DOI: 10.1111/ele.13241] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2018] [Revised: 01/21/2019] [Accepted: 02/04/2019] [Indexed: 01/30/2023]
Number Cited by Other Article(s)
1
Meacock OJ, Mitri S. Environment-Organism Feedbacks Drive Changes in Ecological Interactions. Ecol Lett 2025;28:e70027. [PMID: 39737705 DOI: 10.1111/ele.70027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 11/06/2024] [Accepted: 11/09/2024] [Indexed: 01/01/2025]
2
Silva-Portela RDCB, Minnicelli CF, Freitas JF, Fonseca MMB, Lima Silva DFD, Silva-Barbalho KK, Falcão RM, Bruce T, Cavalcante JVF, Dalmolin RJS, Agnez-Lima LF. Unlocking the transcriptional profiles of an oily waste-degrading bacterial consortium. JOURNAL OF HAZARDOUS MATERIALS 2024;485:136866. [PMID: 39694004 DOI: 10.1016/j.jhazmat.2024.136866] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2024] [Revised: 11/27/2024] [Accepted: 12/11/2024] [Indexed: 12/20/2024]
3
O'Connor MR, Thoma CJ, Dodge AG, Wackett LP. Phenotypic Plasticity During Organofluorine Degradation Revealed by Adaptive Evolution. Microb Biotechnol 2024;17:e70066. [PMID: 39724398 DOI: 10.1111/1751-7915.70066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2024] [Revised: 11/02/2024] [Accepted: 11/20/2024] [Indexed: 12/28/2024]  Open
4
Al-Tameemi Z, Rodríguez-Verdugo A. Microbial diversification is maintained in an experimentally evolved synthetic community. mSystems 2024;9:e0105324. [PMID: 39404341 PMCID: PMC11575400 DOI: 10.1128/msystems.01053-24] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Accepted: 09/11/2024] [Indexed: 11/20/2024]  Open
5
Letten AD, Yamamichi M, Richardson JA, Ke PJ. Microbial Dormancy Supports Multi-Species Coexistence Under Resource Fluctuations. Ecol Lett 2024;27:e14507. [PMID: 39354904 DOI: 10.1111/ele.14507] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2024] [Revised: 08/16/2024] [Accepted: 08/20/2024] [Indexed: 10/03/2024]
6
Jiang X, Peng Z, Zhang J. Starting with screening strains to construct synthetic microbial communities (SynComs) for traditional food fermentation. Food Res Int 2024;190:114557. [PMID: 38945561 DOI: 10.1016/j.foodres.2024.114557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 05/16/2024] [Accepted: 05/26/2024] [Indexed: 07/02/2024]
7
Abdoli P, Vulin C, Lepiz M, Chase AB, Weihe C, Rodríguez-Verdugo A. Substrate complexity buffers negative interactions in a synthetic community of leaf litter degraders. FEMS Microbiol Ecol 2024;100:fiae102. [PMID: 39020097 PMCID: PMC11289631 DOI: 10.1093/femsec/fiae102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Revised: 07/02/2024] [Accepted: 07/16/2024] [Indexed: 07/19/2024]  Open
8
Gupta G, Labrie S, Filteau M. Systematic Evaluation of Biotic and Abiotic Factors in Antifungal Microorganism Screening. Microorganisms 2024;12:1396. [PMID: 39065164 PMCID: PMC11279232 DOI: 10.3390/microorganisms12071396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Revised: 07/05/2024] [Accepted: 07/07/2024] [Indexed: 07/28/2024]  Open
9
Ugolini GS, Wang M, Secchi E, Pioli R, Ackermann M, Stocker R. Microfluidic approaches in microbial ecology. LAB ON A CHIP 2024;24:1394-1418. [PMID: 38344937 PMCID: PMC10898419 DOI: 10.1039/d3lc00784g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/28/2024]
10
Zhu S, Hong J, Wang T. Horizontal gene transfer is predicted to overcome the diversity limit of competing microbial species. Nat Commun 2024;15:800. [PMID: 38280843 PMCID: PMC10821886 DOI: 10.1038/s41467-024-45154-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2023] [Accepted: 01/17/2024] [Indexed: 01/29/2024]  Open
11
McNichol SM, Sanchez-Quete F, Loeb SK, Teske AP, Shah Walter SR, Mahmoudi N. Dynamics of carbon substrate competition among heterotrophic microorganisms. THE ISME JOURNAL 2024;18:wrae018. [PMID: 38366177 PMCID: PMC10942773 DOI: 10.1093/ismejo/wrae018] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Revised: 01/06/2024] [Accepted: 01/26/2024] [Indexed: 02/18/2024]
12
Burkart T, Willeke J, Frey E. Periodic temporal environmental variations induce coexistence in resource competition models. Phys Rev E 2023;108:034404. [PMID: 37849086 DOI: 10.1103/physreve.108.034404] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Accepted: 06/13/2023] [Indexed: 10/19/2023]
13
Martinez JA, Delvenne M, Henrion L, Moreno F, Telek S, Dusny C, Delvigne F. Controlling microbial co-culture based on substrate pulsing can lead to stability through differential fitness advantages. PLoS Comput Biol 2022;18:e1010674. [PMID: 36315576 PMCID: PMC9648842 DOI: 10.1371/journal.pcbi.1010674] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2022] [Revised: 11/10/2022] [Accepted: 10/22/2022] [Indexed: 11/12/2022]  Open
14
Yang D, Kato H, Kawatsu K, Osada Y, Azuma T, Nagata Y, Kondoh M. Reconstruction of a Soil Microbial Network Induced by Stress Temperature. Microbiol Spectr 2022;10:e0274822. [PMID: 35972265 PMCID: PMC9602341 DOI: 10.1128/spectrum.02748-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 08/01/2022] [Indexed: 01/04/2023]  Open
15
Reyes-González D, De Luna-Valenciano H, Utrilla J, Sieber M, Peña-Miller R, Fuentes-Hernández A. Dynamic proteome allocation regulates the profile of interaction of auxotrophic bacterial consortia. ROYAL SOCIETY OPEN SCIENCE 2022;9:212008. [PMID: 35592760 PMCID: PMC9066302 DOI: 10.1098/rsos.212008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/11/2022] [Accepted: 03/25/2022] [Indexed: 05/03/2023]
16
Rare and localized events stabilize microbial community composition and patterns of spatial self-organization in a fluctuating environment. THE ISME JOURNAL 2022;16:1453-1463. [PMID: 35079136 PMCID: PMC9038690 DOI: 10.1038/s41396-022-01189-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 12/19/2021] [Accepted: 01/06/2022] [Indexed: 01/07/2023]
17
Malik AA, Bouskill NJ. Drought impacts on microbial trait distribution and feedback to soil carbon cycling. Funct Ecol 2022. [DOI: 10.1111/1365-2435.14010] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
18
Shibasaki S, Mobilia M, Mitri S. Exclusion of the fittest predicts microbial community diversity in fluctuating environments. J R Soc Interface 2021;18:20210613. [PMID: 34610260 PMCID: PMC8492180 DOI: 10.1098/rsif.2021.0613] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Accepted: 09/09/2021] [Indexed: 11/12/2022]  Open
19
Gupta G, Ndiaye A, Filteau M. Leveraging Experimental Strategies to Capture Different Dimensions of Microbial Interactions. Front Microbiol 2021;12:700752. [PMID: 34646243 PMCID: PMC8503676 DOI: 10.3389/fmicb.2021.700752] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Accepted: 08/31/2021] [Indexed: 12/27/2022]  Open
20
Evolving Interactions and Emergent Functions in Microbial Consortia. mSystems 2021;6:e0077421. [PMID: 34427521 PMCID: PMC8409725 DOI: 10.1128/msystems.00774-21] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
21
A distinct growth physiology enhances bacterial growth under rapid nutrient fluctuations. Nat Commun 2021;12:3662. [PMID: 34135315 PMCID: PMC8209047 DOI: 10.1038/s41467-021-23439-8] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2020] [Accepted: 04/19/2021] [Indexed: 11/13/2022]  Open
22
Nev OA, Lindsay RJ, Jepson A, Butt L, Beardmore RE, Gudelj I. Predicting microbial growth dynamics in response to nutrient availability. PLoS Comput Biol 2021;17:e1008817. [PMID: 33735173 PMCID: PMC8009381 DOI: 10.1371/journal.pcbi.1008817] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Revised: 03/30/2021] [Accepted: 02/17/2021] [Indexed: 01/04/2023]  Open
23
Defrenne CE, Abs E, Longhi Cordeiro A, Dietterich L, Hough M, Jones JM, Kivlin SN, Chen W, Cusack D, Franco ALC, Khasanova A, Stover D, Romero‐Olivares AL. The Ecology Underground coalition: building a collaborative future of belowground ecology and ecologists. THE NEW PHYTOLOGIST 2021;229:3058-3064. [PMID: 33616944 PMCID: PMC7986216 DOI: 10.1111/nph.17163] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/14/2023]
24
Nguyen J, Lara-Gutiérrez J, Stocker R. Environmental fluctuations and their effects on microbial communities, populations and individuals. FEMS Microbiol Rev 2020;45:6041721. [PMID: 33338228 PMCID: PMC8371271 DOI: 10.1093/femsre/fuaa068] [Citation(s) in RCA: 73] [Impact Index Per Article: 14.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2020] [Accepted: 12/05/2020] [Indexed: 12/20/2022]  Open
25
Rapid evolution destabilizes species interactions in a fluctuating environment. ISME JOURNAL 2020;15:450-460. [PMID: 33024292 DOI: 10.1038/s41396-020-00787-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Revised: 09/09/2020] [Accepted: 09/18/2020] [Indexed: 12/16/2022]
26
Bär J, Boumasmoud M, Kouyos RD, Zinkernagel AS, Vulin C. Efficient microbial colony growth dynamics quantification with ColTapp, an automated image analysis application. Sci Rep 2020;10:16084. [PMID: 32999342 PMCID: PMC7528005 DOI: 10.1038/s41598-020-72979-4] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2020] [Accepted: 09/08/2020] [Indexed: 12/14/2022]  Open
27
Abreu CI, Andersen Woltz VL, Friedman J, Gore J. Microbial communities display alternative stable states in a fluctuating environment. PLoS Comput Biol 2020;16:e1007934. [PMID: 32453781 PMCID: PMC7274482 DOI: 10.1371/journal.pcbi.1007934] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2019] [Revised: 06/05/2020] [Accepted: 05/07/2020] [Indexed: 12/24/2022]  Open
28
Phenotypic variation in spatially structured microbial communities: ecological origins and consequences. Curr Opin Biotechnol 2020;62:220-227. [DOI: 10.1016/j.copbio.2019.12.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2019] [Revised: 12/12/2019] [Accepted: 12/13/2019] [Indexed: 02/06/2023]
29
Gorter FA, Manhart M, Ackermann M. Understanding the evolution of interspecies interactions in microbial communities. Philos Trans R Soc Lond B Biol Sci 2020;375:20190256. [PMID: 32200743 DOI: 10.1098/rstb.2019.0256] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
30
Turner CB, Buskirk SW, Harris KB, Cooper VS. Negative frequency-dependent selection maintains coexisting genotypes during fluctuating selection. Mol Ecol 2020;29:138-148. [PMID: 31725941 PMCID: PMC6952539 DOI: 10.1111/mec.15307] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2019] [Revised: 11/10/2019] [Accepted: 11/12/2019] [Indexed: 02/01/2023]
31
Guo S, He F, Tang T, Tan L, Cai Q. Intra-annual fluctuations dominating temporal dynamics of benthic diatom assemblages in a Chinese mountainous river. ANNALES DE LIMNOLOGIE - INTERNATIONAL JOURNAL OF LIMNOLOGY 2020;56:22. [DOI: 10.1051/limn/2020020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
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