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Hauffe T, Cantalapiedra JL, Silvestro D. Trait-mediated speciation and human-driven extinctions in proboscideans revealed by unsupervised Bayesian neural networks. SCIENCE ADVANCES 2024; 10:eadl2643. [PMID: 39047110 PMCID: PMC11268411 DOI: 10.1126/sciadv.adl2643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/08/2023] [Accepted: 06/21/2024] [Indexed: 07/27/2024]
Abstract
Species life-history traits, paleoenvironment, and biotic interactions likely influence speciation and extinction rates, affecting species richness over time. Birth-death models inferring the impact of these factors typically assume monotonic relationships between single predictors and rates, limiting our ability to assess more complex effects and their relative importance and interaction. We introduce a Bayesian birth-death model using unsupervised neural networks to explore multifactorial and nonlinear effects on speciation and extinction rates using fossil data. It infers lineage- and time-specific rates and disentangles predictor effects and importance through explainable artificial intelligence techniques. Analysis of the proboscidean fossil record revealed speciation rates shaped by dietary flexibility and biogeographic events. The emergence of modern humans escalated extinction rates, causing recent diversity decline, while regional climate had a lesser impact. Our model paves the way for an improved understanding of the intricate dynamics shaping clade diversification.
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Affiliation(s)
- Torsten Hauffe
- Department of Biology, University of Fribourg and Swiss Institute of Bioinformatics, 1700 Fribourg, Switzerland
| | - Juan L. Cantalapiedra
- Departamento de Paleobiología, Museo Nacional de Ciencias Naturales, Consejo Superior de Investigaciones Científicas, 28006 Madrid, Spain
- GloCEE Global Change Ecology and Evolution Research Group, Departamento de Ciencias de la Vida, Universidad de Alcalá, 28801 Alcalá de Henares, Spain
- Museum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Invalidenstraße 43, 10115 Berlin, Germany
| | - Daniele Silvestro
- Department of Biology, University of Fribourg and Swiss Institute of Bioinformatics, 1700 Fribourg, Switzerland
- Department of Biological and Environmental Sciences, Gothenburg Global Biodiversity Centre, University of Gothenburg, 40530 Gothenburg, Sweden
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2
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Pereira AG, Antonelli A, Silvestro D, Faurby S. Two Major Extinction Events in the Evolutionary History of Turtles: One Caused by an Asteroid, the Other by Hominins. Am Nat 2024; 203:644-654. [PMID: 38781523 DOI: 10.1086/729604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/25/2024]
Abstract
AbstractWe live in a time of accelerated biological extinctions that has the potential to mirror past mass extinction events. However, the rarity of mass extinctions and the restructuring of diversity they cause complicate direct comparisons between the current extinction crisis and earlier events. Among animals, turtles (Testudinata) are one of few groups that have both a rich fossil record and sufficiently stable ecological and functional roles to enable meaningful comparisons between the end-Cretaceous mass extinction (∼66 Ma) and the ongoing wave of extinctions. Here we analyze the fossil record of the entire turtle clade and identify two peaks in extinction rates over their evolutionary history. The first coincides with the Cretaceous-Paleogene transition, reflecting patterns previously reported for other taxa. The second major extinction event started in the Pliocene and continues until now. This peak is detectable only for terrestrial turtles and started much earlier in Africa and Eurasia than elsewhere. On the basis of the timing, geography, and functional group of this extinction event, we postulate a link to co-occurring hominins rather than climate change as the cause. These results lend further support to the view that negative biodiversity impacts were already incurred by our ancestors and related lineages and demonstrate the severity of this continued impact through human activities.
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3
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Allen BL, Bobier C, Dawson S, Fleming PJS, Hampton J, Jachowski D, Kerley GIH, Linnell JDC, Marnewick K, Minnie L, Muthersbaugh M, O'Riain MJ, Parker D, Proulx G, Somers MJ, Titus K. Why humans kill animals and why we cannot avoid it. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 896:165283. [PMID: 37406694 DOI: 10.1016/j.scitotenv.2023.165283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 06/22/2023] [Accepted: 07/01/2023] [Indexed: 07/07/2023]
Abstract
Killing animals has been a ubiquitous human behaviour throughout history, yet it is becoming increasingly controversial and criticised in some parts of contemporary human society. Here we review 10 primary reasons why humans kill animals, discuss the necessity (or not) of these forms of killing, and describe the global ecological context for human killing of animals. Humans historically and currently kill animals either directly or indirectly for the following reasons: (1) wild harvest or food acquisition, (2) human health and safety, (3) agriculture and aquaculture, (4) urbanisation and industrialisation, (5) invasive, overabundant or nuisance wildlife control, (6) threatened species conservation, (7) recreation, sport or entertainment, (8) mercy or compassion, (9) cultural and religious practice, and (10) research, education and testing. While the necessity of some forms of animal killing is debatable and further depends on individual values, we emphasise that several of these forms of animal killing are a necessary component of our inescapable involvement in a single, functioning, finite, global food web. We conclude that humans (and all other animals) cannot live in a way that does not require animal killing either directly or indirectly, but humans can modify some of these killing behaviours in ways that improve the welfare of animals while they are alive, or to reduce animal suffering whenever they must be killed. We encourage a constructive dialogue that (1) accepts and permits human participation in one enormous global food web dependent on animal killing and (2) focuses on animal welfare and environmental sustainability. Doing so will improve the lives of both wild and domestic animals to a greater extent than efforts to avoid, prohibit or vilify human animal-killing behaviour.
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Affiliation(s)
- Benjamin L Allen
- University of Southern Queensland, Institute for Life Sciences and the Environment, Toowoomba, Queensland 4350, Australia; Centre for African Conservation Ecology, Nelson Mandela University, Gqeberha 6034, South Africa.
| | - Christopher Bobier
- Department of Theology and Philosophy, Saint Mary's University of Minnesota, Winona, MN, USA
| | - Stuart Dawson
- Terrestrial Ecosystem Science and Sustainability, Harry Butler Institute, Murdoch University, Perth, Western Australia 6150, Australia; Department of Primary Industries and Regional Development, South Perth, Western Australia 6151, Australia
| | - Peter J S Fleming
- University of Southern Queensland, Institute for Life Sciences and the Environment, Toowoomba, Queensland 4350, Australia; Ecosystem Management, School of Environmental and Rural Science, University of New England, Armidale, New South Wales 2351, Australia; Vertebrate Pest Research Unit, New South Wales Department of Primary Industries, Orange Agricultural Institute, Orange, New South Wales 2800, Australia
| | - Jordan Hampton
- Terrestrial Ecosystem Science and Sustainability, Harry Butler Institute, Murdoch University, Perth, Western Australia 6150, Australia; Faculty of Veterinary and Agricultural Sciences, University of Melbourne, Parkville 3052, Victoria, Australia
| | - David Jachowski
- Department of Forestry and Environmental Conservation, Clemson University, Clemson, SC, USA
| | - Graham I H Kerley
- Centre for African Conservation Ecology, Nelson Mandela University, Gqeberha 6034, South Africa
| | - John D C Linnell
- Norwegian Institute of Nature Research, Vormstuguveien 40, 2624 Lillehammer, Norway; Inland Norway University of Applied Sciences, Department of Forestry and Wildlife Management, Anne Evenstads vei 80, NO-2480 Koppang, Norway
| | - Kelly Marnewick
- Department of Nature Conservation, Tshwane University of Technology, Pretoria 0001, South Africa
| | - Liaan Minnie
- Centre for African Conservation Ecology, Nelson Mandela University, Gqeberha 6034, South Africa; School of Biology and Environmental Sciences, University of Mpumalanga, Mbombela 1200, South Africa
| | - Mike Muthersbaugh
- Department of Forestry and Environmental Conservation, Clemson University, Clemson, SC, USA
| | - M Justin O'Riain
- Institute for Communities and Wildlife in Africa, Department of Biological Sciences, University of Cape Town, Upper Campus, Rondebosch 7700, South Africa
| | - Dan Parker
- School of Biology and Environmental Sciences, University of Mpumalanga, Mbombela 1200, South Africa
| | - Gilbert Proulx
- Alpha Wildlife Research & Management Ltd, Sherwood Park, Alberta T8H 1W3, Canada
| | - Michael J Somers
- Mammal Research Institute, Centre for Invasion Biology, Department of Zoology and Entomology, University of Pretoria, Pretoria, South Africa
| | - Keifer Titus
- Department of Forestry and Environmental Conservation, Clemson University, Clemson, SC, USA
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4
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Lauer DA, Lawing AM, Short RA, Manthi FK, Müller J, Head JJ, McGuire JL. Disruption of trait-environment relationships in African megafauna occurred in the middle Pleistocene. Nat Commun 2023; 14:4016. [PMID: 37463920 DOI: 10.1038/s41467-023-39480-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Accepted: 06/15/2023] [Indexed: 07/20/2023] Open
Abstract
Mammalian megafauna have been critical to the functioning of Earth's biosphere for millions of years. However, since the Plio-Pleistocene, their biodiversity has declined concurrently with dramatic environmental change and hominin evolution. While these biodiversity declines are well-documented, their implications for the ecological function of megafaunal communities remain uncertain. Here, we adapt ecometric methods to evaluate whether the functional link between communities of herbivorous, eastern African megafauna and their environments (i.e., functional trait-environment relationships) was disrupted as biodiversity losses occurred over the past 7.4 Ma. Herbivore taxonomic and functional diversity began to decline during the Pliocene as open grassland habitats emerged, persisted, and expanded. In the mid-Pleistocene, grassland expansion intensified, and climates became more variable and arid. It was then that phylogenetic diversity declined, and the trait-environment relationships of herbivore communities shifted significantly. Our results divulge the varying implications of different losses in megafaunal biodiversity. Only the losses that occurred since the mid-Pleistocene were coincident with a disturbance to community ecological function. Prior diversity losses, conversely, occurred as the megafaunal species and trait pool narrowed towards those adapted to grassland environments.
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Affiliation(s)
- Daniel A Lauer
- Interdisciplinary Graduate Program in Quantitative Biosciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA.
| | - A Michelle Lawing
- Department of Ecology and Conservation Biology, Texas A&M University, College Station, TX, 77843, USA
| | - Rachel A Short
- Department of Natural Resource Management, South Dakota State University, Rapid City, SD, 57703, USA
| | - Fredrick K Manthi
- Department of Earth Sciences, National Museums of Kenya, Nairobi, Kenya
| | - Johannes Müller
- Leibniz Institute for Evolution and Biodiversity Science, Museum für Naturkunde Berlin, 10115, Berlin, Germany
| | - Jason J Head
- Department of Zoology and University Museum of Zoology, University of Cambridge, Cambridge, CB2 3EJ, UK
| | - Jenny L McGuire
- Interdisciplinary Graduate Program in Quantitative Biosciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
- School of Earth and Atmospheric Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
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5
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Cobo-Sánchez L, Pizarro-Monzo M, Cifuentes-Alcobendas G, Jiménez García B, Abellán Beltrán N, Courtenay LA, Mabulla A, Baquedano E, Domínguez-Rodrigo M. Computer vision supports primary access to meat by early Homo 1.84 million years ago. PeerJ 2022; 10:e14148. [PMID: 36275476 PMCID: PMC9586113 DOI: 10.7717/peerj.14148] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2022] [Accepted: 09/07/2022] [Indexed: 01/21/2023] Open
Abstract
Human carnivory is atypical among primates. Unlike chimpanzees and bonobos, who are known to hunt smaller monkeys and eat them immediately, human foragers often cooperate to kill large animals and transport them to a safe location to be shared. While it is known that meat became an important part of the hominin diet around 2.6-2 Mya, whether intense cooperation and food sharing developed in conjunction with the regular intake of meat remains unresolved. A widespread assumption is that early hominins acquired animal protein through klepto-parasitism at felid kills. This should be testable by detecting felid-specific bone modifications and tooth marks on carcasses consumed by hominins. Here, deep learning (DL) computer vision was used to identify agency through the analysis of tooth pits and scores on bones recovered from the Early Pleistocene site of DS (Bed I, Olduvai Gorge). We present the first objective evidence of primary access to meat by hominins 1.8 Mya by showing that the most common securely detectable bone-modifying fissipeds at the site were hyenas. The absence of felid modifications in most of the carcasses analyzed indicates that hominins were the primary consumers of most animals accumulated at the site, with hyenas intervening at the post-depositional stage. This underscores the role of hominins as a prominent part of the early Pleistocene African carnivore guild. It also stresses the major (and potentially regular) role that meat played in the diet that configured the emergence of early Homo.
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Affiliation(s)
- Lucía Cobo-Sánchez
- Institute of Evolution in Africa, University of Alcala, Madrid, Madrid, Spain,Institute of Archaeology, University of Cologne, Cologne, Germany
| | | | - Gabriel Cifuentes-Alcobendas
- Institute of Evolution in Africa, University of Alcala, Madrid, Madrid, Spain,Area of Prehistory (Department History and Philosophy, University of Alcala, Alcala de Henares, Madrid, Spain
| | - Blanca Jiménez García
- Institute of Evolution in Africa, University of Alcala, Madrid, Madrid, Spain,Area of Prehistory (Department History and Philosophy, University of Alcala, Alcala de Henares, Madrid, Spain
| | - Natalia Abellán Beltrán
- Institute of Evolution in Africa, University of Alcala, Madrid, Madrid, Spain,Department of Artificial Intelligence of UNED (National University for Distance Education), UNED, Madrid, Spain
| | - Lloyd A. Courtenay
- Department of Cartographic and Terrain Engineering, Superior Polytechnic School of Ávila,, University of Salamanca, Avila, Spain
| | - Audax Mabulla
- Department of Archaeology and Heritage Studies, University of Dar es Salaam, Dar es Salaam, Tanzania
| | - Enrique Baquedano
- Institute of Evolution in Africa, University of Alcala, Madrid, Madrid, Spain,Regional Paleontological and Archaeological Museum of Madrid, Alcala de Henares, Madrid, Spain
| | - Manuel Domínguez-Rodrigo
- Institute of Evolution in Africa, University of Alcala, Madrid, Madrid, Spain,Area of Prehistory (Department History and Philosophy, University of Alcala, Alcala de Henares, Madrid, Spain,Department of Anthropology, Rice University, Houston, TX, United States of America
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6
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Oommen MA, Shanker K. Signals from the Hunt: Widening the Spectrum on Male Pursuits of Dangerous Animals. JOURNAL OF ANTHROPOLOGICAL RESEARCH 2021. [DOI: 10.1086/715404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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7
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Domínguez-Rodrigo M, Baquedano E, Organista E, Cobo-Sánchez L, Mabulla A, Maskara V, Gidna A, Pizarro-Monzo M, Aramendi J, Galán AB, Cifuentes-Alcobendas G, Vegara-Riquelme M, Jiménez-García B, Abellán N, Barba R, Uribelarrea D, Martín-Perea D, Diez-Martin F, Maíllo-Fernández JM, Rodríguez-Hidalgo A, Courtenay L, Mora R, Maté-González MA, González-Aguilera D. Early Pleistocene faunivorous hominins were not kleptoparasitic, and this impacted the evolution of human anatomy and socio-ecology. Sci Rep 2021; 11:16135. [PMID: 34373471 PMCID: PMC8352906 DOI: 10.1038/s41598-021-94783-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 07/05/2021] [Indexed: 02/07/2023] Open
Abstract
Humans are unique in their diet, physiology and socio-reproductive behavior compared to other primates. They are also unique in the ubiquitous adaptation to all biomes and habitats. From an evolutionary perspective, these trends seem to have started about two million years ago, coinciding with the emergence of encephalization, the reduction of the dental apparatus, the adoption of a fully terrestrial lifestyle, resulting in the emergence of the modern anatomical bauplan, the focalization of certain activities in the landscape, the use of stone tools, and the exit from Africa. It is in this period that clear taphonomic evidence of a switch in diet with respect to Pliocene hominins occurred, with the adoption of carnivory. Until now, the degree of carnivorism in early humans remained controversial. A persistent hypothesis is that hominins acquired meat irregularly (potentially as fallback food) and opportunistically through klepto-foraging. Here, we test this hypothesis and show, in contrast, that the butchery practices of early Pleistocene hominins (unveiled through systematic study of the patterning and intensity of cut marks on their prey) could not have resulted from having frequent secondary access to carcasses. We provide evidence of hominin primary access to animal resources and emphasize the role that meat played in their diets, their ecology and their anatomical evolution, ultimately resulting in the ecologically unrestricted terrestrial adaptation of our species. This has major implications to the evolution of human physiology and potentially for the evolution of the human brain.
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Affiliation(s)
- Manuel Domínguez-Rodrigo
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain.
- Area of Prehistory (Department History and Philosophy), University of Alcalá, 28801, Alcalá de Henares, Spain.
- Department of Anthropology, Rice University, 6100 Main St., Houston, TX, 77005-1827, USA.
| | - Enrique Baquedano
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
- Regional Archaeological Museum of Madrid, Plaza de las Bernardas s/n, Alcalá de Henares, Spain
| | - Elia Organista
- Osteoarchaeological Research Laboratory, Department of Archaeology and Classical Studies, Stockholm University, 106 91, WallenberglaboratorietStockholm, Sweden
| | - Lucía Cobo-Sánchez
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
- Computational Archaeology (CoDArchLab) Institute of Archaeology, University of Cologne, Albertus-Magnus-Platz D-50923, Cologne, Germany
| | - Audax Mabulla
- Department of Archaeology and Heritage Studies, University of Dar Es Salaam, P.O. Box 35050, Dar es Salaam, Tanzania
| | - Vivek Maskara
- The Luminosity Lab, Arizona State University, Tempe, AZ, USA
| | - Agness Gidna
- Paleontology Unit, National Museum of Tanzania in Dar Es Salaam, Robert Shaban St, P.O. Box 511, Dar es Salaam, Tanzania
| | - Marcos Pizarro-Monzo
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
| | - Julia Aramendi
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
| | - Ana Belén Galán
- UMR5608, CNRS TRACES, Université Toulouse Jean-Jaurès, Maison de La Recherche, 5 allées Antonio Machado, 31058, Toulouse Cedex 9, France
| | - Gabriel Cifuentes-Alcobendas
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
- Area of Prehistory (Department History and Philosophy), University of Alcalá, 28801, Alcalá de Henares, Spain
| | - Marina Vegara-Riquelme
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
- Area of Prehistory (Department History and Philosophy), University of Alcalá, 28801, Alcalá de Henares, Spain
| | - Blanca Jiménez-García
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
- Artificial Intelligence Department, Universidad Nacional de Educación a Distancia, UNED, Juan del Rosal 16, Madrid, Spain
| | - Natalia Abellán
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
- Artificial Intelligence Department, Universidad Nacional de Educación a Distancia, UNED, Juan del Rosal 16, Madrid, Spain
| | - Rebeca Barba
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
| | - David Uribelarrea
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
- Geodynamics, Stratigraphy and Palaeontology Department, Complutense University of Madrid, José Antonio Novais 12, 28040, Madrid, Spain
| | - David Martín-Perea
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
- Paleobiology Department, National Natural Sciences Museum-CSIC, José Gutiérrez Abascal 2, 28006, Madrid, Spain
| | - Fernando Diez-Martin
- Department of Archaeology and Prehistory, University of Valladolid, Valladolid, Spain
| | - José Manuel Maíllo-Fernández
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
- Department of Prehistory and Archaeology, Universidad Nacional de Educación a Distancia, UNED, Paseo Senda del Rey, Madrid, Spain
| | - Antonio Rodríguez-Hidalgo
- Institute of Evolution in Africa (IDEA), Alcalá University, Covarrubias 36, 28010, Madrid, Spain
- IPHES, University Rovira I Virgili, Tarragona, Spain
| | - Lloyd Courtenay
- Department of Cartographic and Terrain Engineering, Superior Polytechnic School of Ávila, University of Salamanca, Salamanca, Spain
| | - Rocío Mora
- Department of Cartographic and Terrain Engineering, Superior Polytechnic School of Ávila, University of Salamanca, Salamanca, Spain
| | - Miguel Angel Maté-González
- Department of Cartographic and Terrain Engineering, Superior Polytechnic School of Ávila, University of Salamanca, Salamanca, Spain
- Department of Topographic and Cartography Engineering, Higher Technical School of Engineers in Topography, Geodesy and Cartography, Universidad Politécnica de Madrid, Mercator 2, 28031, Madrid, Spain
| | - Diego González-Aguilera
- Department of Cartographic and Terrain Engineering, Superior Polytechnic School of Ávila, University of Salamanca, Salamanca, Spain
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Amiot C, Ji W, Ellis EC, Anderson MG. Temporal and sociocultural effects of human colonisation on native biodiversity: filtering and rates of adaptation. OIKOS 2021. [DOI: 10.1111/oik.07615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Christophe Amiot
- Human Wildlife Interaction Research Group, Inst. of Natural and Mathematical Sciences, Massey Univ. Albany New Zealand
- UMR 6554 CNRS, LETG–Angers, Univ. d'Angers Angers France
| | - Weihong Ji
- Human Wildlife Interaction Research Group, Inst. of Natural and Mathematical Sciences, Massey Univ. Albany New Zealand
| | - Erle C. Ellis
- Dept of Geography and Environmental Systems, Univ. of Maryland Baltimore County Baltimore USA
| | - Michael G. Anderson
- Ecology, Behaviour and Conservation Group, Inst. of Natural and Mathematical Sciences, Massey Univ. Albany New Zealand
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9
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Quinn RL, Lepre CJ. Contracting eastern African C 4 grasslands during the extinction of Paranthropus boisei. Sci Rep 2021; 11:7164. [PMID: 33785831 PMCID: PMC8009881 DOI: 10.1038/s41598-021-86642-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2020] [Accepted: 03/18/2021] [Indexed: 02/01/2023] Open
Abstract
The extinction of the Paranthropus boisei estimated to just before 1 Ma occurred when C4 grasslands dominated landscapes of the Eastern African Rift System (EARS). P. boisei has been characterized as an herbivorous C4 specialist, and paradoxically, its demise coincided with habitats favorable to its dietary ecology. Here we report new pedogenic carbonate stable carbon (δ13CPC) and oxygen (δ18OPC) values (nodules = 53, analyses = 95) from an under-sampled interval (1.4-0.7 Ma) in the Turkana Basin (Kenya), one of the most fossiliferous locales of P. boisei. We combined our new results with published δ13CPC values from the EARS dated to 3-0 Ma, conducted time-series analysis of woody cover (ƒWC), and compared the EARS ƒWC trends to regional and global paleo-environmental and -climatic datasets. Our results demonstrate that the long-term rise of C4 grasslands was punctuated by a transient but significant increase in C3 vegetation and warmer temperatures, coincident with the Mid-Pleistocene Transition (1.3-0.7 Ma) and implicating a short-term rise in pCO2. The contraction of C4 grasslands escalated dietary competition amongst the abundant C4-feeders, likely influencing P. boisei's demise.
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Affiliation(s)
- Rhonda L Quinn
- Department of Sociology, Anthropology, Social Work and Criminal Justice, Seton Hall University, 400 South Orange Ave, South Orange, NJ, 07079, USA.
- Department of Earth and Planetary Sciences, Rutgers University, 610 Taylor Road, Piscataway, NJ, 08854, USA.
| | - Christopher J Lepre
- Department of Earth and Planetary Sciences, Rutgers University, 610 Taylor Road, Piscataway, NJ, 08854, USA
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10
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Ben-Dor M, Sirtoli R, Barkai R. The evolution of the human trophic level during the Pleistocene. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2021; 175 Suppl 72:27-56. [PMID: 33675083 DOI: 10.1002/ajpa.24247] [Citation(s) in RCA: 23] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Revised: 12/07/2020] [Accepted: 01/19/2021] [Indexed: 02/06/2023]
Abstract
The human trophic level (HTL) during the Pleistocene and its degree of variability serve, explicitly or tacitly, as the basis of many explanations for human evolution, behavior, and culture. Previous attempts to reconstruct the HTL have relied heavily on an analogy with recent hunter-gatherer groups' diets. In addition to technological differences, recent findings of substantial ecological differences between the Pleistocene and the Anthropocene cast doubt regarding that analogy's validity. Surprisingly little systematic evolution-guided evidence served to reconstruct HTL. Here, we reconstruct the HTL during the Pleistocene by reviewing evidence for the impact of the HTL on the biological, ecological, and behavioral systems derived from various existing studies. We adapt a paleobiological and paleoecological approach, including evidence from human physiology and genetics, archaeology, paleontology, and zoology, and identified 25 sources of evidence in total. The evidence shows that the trophic level of the Homo lineage that most probably led to modern humans evolved from a low base to a high, carnivorous position during the Pleistocene, beginning with Homo habilis and peaking in Homo erectus. A reversal of that trend appears in the Upper Paleolithic, strengthening in the Mesolithic/Epipaleolithic and Neolithic, and culminating with the advent of agriculture. We conclude that it is possible to reach a credible reconstruction of the HTL without relying on a simple analogy with recent hunter-gatherers' diets. The memory of an adaptation to a trophic level that is embedded in modern humans' biology in the form of genetics, metabolism, and morphology is a fruitful line of investigation of past HTLs, whose potential we have only started to explore.
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Affiliation(s)
- Miki Ben-Dor
- Department of Archaeology, Tel Aviv University, Tel Aviv, Israel
| | | | - Ran Barkai
- Department of Archaeology, Tel Aviv University, Tel Aviv, Israel
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11
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Lazagabaster IA, Ullman M, Porat R, Halevi R, Porat N, Davidovich U, Marom N. Changes in the large carnivore community structure of the Judean Desert in connection to Holocene human settlement dynamics. Sci Rep 2021; 11:3548. [PMID: 33574447 PMCID: PMC7878878 DOI: 10.1038/s41598-021-82996-6] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 01/26/2021] [Indexed: 01/30/2023] Open
Abstract
Investigating historical anthropogenic impacts on faunal communities is key to understanding present patterns of biodiversity and holds important implications for conservation biology. While several studies have demonstrated the human role in the extinction of large herbivores, effective methods to study human interference on large carnivores in the past are limited by the small number of carnivoran remains in the paleozoological record. Here, we integrate a systematic paleozoological survey of biogenic cave assemblages with the archaeological and paleoenvironmental records of the Judean Desert, to reveal historical changes in the large carnivore community. Our results show a late Holocene (~ 3400 years ago) faunal reassembly characterized by the diminishment of the dominant large carnivoran, the Arabian leopard (Panthera pardus sbsp. nimr), and the spread of the Syrian striped hyena (Hyaena hyaena sbsp. syriaca). We suggest that increased hunting pressure in combination with regional aridification were responsible for the decrease in the number of leopards, while the introduction of domestic animals and settlement refuse brought new scavenging opportunities for hyenas. The recent extirpation of leopards from the region has been a final note to the Holocene human impact on the ecosystem.
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Affiliation(s)
- Ignacio A. Lazagabaster
- grid.7468.d0000 0001 2248 7639Museum für Naturkunde, Leibniz Institute for Research on Evolution and Biodiversity at the Humboldt University Berlin, Invalidenstrasse 43, 10115 Berlin, Germany ,grid.18098.380000 0004 1937 0562Department of Maritime Civilizations, Charney School of Marine Science & Recanati Institute for Maritime Studies, University of Haifa, Haifa, Israel
| | - Micka Ullman
- grid.9619.70000 0004 1937 0538Institute of Archaeology, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Roi Porat
- grid.9619.70000 0004 1937 0538Institute of Archaeology, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Romi Halevi
- grid.9619.70000 0004 1937 0538Institute of Archaeology, The Hebrew University of Jerusalem, Jerusalem, Israel
| | | | - Uri Davidovich
- grid.9619.70000 0004 1937 0538Institute of Archaeology, The Hebrew University of Jerusalem, Jerusalem, Israel
| | - Nimrod Marom
- grid.18098.380000 0004 1937 0562Department of Maritime Civilizations, Charney School of Marine Science & Recanati Institute for Maritime Studies, University of Haifa, Haifa, Israel
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12
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Kazandjian TD, Petras D, Robinson SD, van Thiel J, Greene HW, Arbuckle K, Barlow A, Carter DA, Wouters RM, Whiteley G, Wagstaff SC, Arias AS, Albulescu LO, Plettenberg Laing A, Hall C, Heap A, Penrhyn-Lowe S, McCabe CV, Ainsworth S, da Silva RR, Dorrestein PC, Richardson MK, Gutiérrez JM, Calvete JJ, Harrison RA, Vetter I, Undheim EAB, Wüster W, Casewell NR. Convergent evolution of pain-inducing defensive venom components in spitting cobras. Science 2021; 371:386-390. [PMID: 33479150 PMCID: PMC7610493 DOI: 10.1126/science.abb9303] [Citation(s) in RCA: 81] [Impact Index Per Article: 27.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2020] [Accepted: 12/07/2020] [Indexed: 01/06/2023]
Abstract
Convergent evolution provides insights into the selective drivers underlying evolutionary change. Snake venoms, with a direct genetic basis and clearly defined functional phenotype, provide a model system for exploring the repeated evolution of adaptations. While snakes use venom primarily for predation, and venom composition often reflects diet specificity, three lineages of cobras have independently evolved the ability to spit venom at adversaries. Using gene, protein, and functional analyses, we show that the three spitting lineages possess venoms characterized by an up-regulation of phospholipase A2 (PLA2) toxins, which potentiate the action of preexisting venom cytotoxins to activate mammalian sensory neurons and cause enhanced pain. These repeated independent changes provide a fascinating example of convergent evolution across multiple phenotypic levels driven by selection for defense.
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Affiliation(s)
- T D Kazandjian
- Centre for Snakebite Research and Interventions, Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK
| | - D Petras
- Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093, USA
- Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093, USA
| | - S D Robinson
- Centre for Advanced Imaging, University of Queensland, St Lucia, QLD 4072, Australia
- Institute for Molecular Bioscience, University of Queensland, St Lucia, QLD 4072, Australia
| | - J van Thiel
- Institute of Biology, University of Leiden, Leiden 2333BE, Netherlands
| | - H W Greene
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY 14853, USA
| | - K Arbuckle
- Department of Biosciences, College of Science, Swansea University, Swansea SA2 8PP, UK
| | - A Barlow
- School of Science and Technology, Nottingham Trent University, Nottingham NG11 8NS, UK
- Molecular Ecology and Fisheries Genetics Laboratory, School of Natural Sciences, Bangor University, Bangor LL57 2UW, UK
| | - D A Carter
- Institute for Molecular Bioscience, University of Queensland, St Lucia, QLD 4072, Australia
| | - R M Wouters
- Institute of Biology, University of Leiden, Leiden 2333BE, Netherlands
| | - G Whiteley
- Centre for Snakebite Research and Interventions, Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK
| | - S C Wagstaff
- Centre for Snakebite Research and Interventions, Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK
- Research Computing Unit, Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK
| | - A S Arias
- Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica, San José 11501, Costa Rica
| | - L-O Albulescu
- Centre for Snakebite Research and Interventions, Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK
| | - A Plettenberg Laing
- Molecular Ecology and Fisheries Genetics Laboratory, School of Natural Sciences, Bangor University, Bangor LL57 2UW, UK
| | - C Hall
- Molecular Ecology and Fisheries Genetics Laboratory, School of Natural Sciences, Bangor University, Bangor LL57 2UW, UK
| | - A Heap
- Molecular Ecology and Fisheries Genetics Laboratory, School of Natural Sciences, Bangor University, Bangor LL57 2UW, UK
| | - S Penrhyn-Lowe
- Molecular Ecology and Fisheries Genetics Laboratory, School of Natural Sciences, Bangor University, Bangor LL57 2UW, UK
| | - C V McCabe
- School of Earth Sciences, University of Bristol, Bristol BS8 1RL, UK
| | - S Ainsworth
- Centre for Snakebite Research and Interventions, Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK
| | - R R da Silva
- Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093, USA
- Núcleo de Pesquisa em Produtos Naturais e Sintéticos (NPPNS), Molecular Sciences Department, School of Pharmaceutical Sciences of Ribeirão Preto, University of São Paulo, Ribeirão Preto, Brazil
| | - P C Dorrestein
- Collaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, CA 92093, USA
| | - M K Richardson
- Institute of Biology, University of Leiden, Leiden 2333BE, Netherlands
| | - J M Gutiérrez
- Instituto Clodomiro Picado, Facultad de Microbiología, Universidad de Costa Rica, San José 11501, Costa Rica
| | - J J Calvete
- Evolutionary and Translational Venomics Laboratory, Consejo Superior de Investigaciones Científicas, 46010 Valencia, Spain
| | - R A Harrison
- Centre for Snakebite Research and Interventions, Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK
| | - I Vetter
- Institute for Molecular Bioscience, University of Queensland, St Lucia, QLD 4072, Australia
- School of Pharmacy, University of Queensland, Woolloongabba, QLD 4102, Australia
| | - E A B Undheim
- Centre for Advanced Imaging, University of Queensland, St Lucia, QLD 4072, Australia
- Institute for Molecular Bioscience, University of Queensland, St Lucia, QLD 4072, Australia
- Centre for Biodiversity Dynamics, Department of Biology, Norwegian University of Science and Technology, 7491 Trondheim, Norway
- Centre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Blindern, 0316 Oslo, Norway
| | - W Wüster
- Molecular Ecology and Fisheries Genetics Laboratory, School of Natural Sciences, Bangor University, Bangor LL57 2UW, UK
| | - N R Casewell
- Centre for Snakebite Research and Interventions, Liverpool School of Tropical Medicine, Liverpool L3 5QA, UK.
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13
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Spikins P, French JC, John-Wood S, Dytham C. Theoretical and Methodological Approaches to Ecological Changes, Social Behaviour and Human Intergroup Tolerance 300,000 to 30,000 BP. JOURNAL OF ARCHAEOLOGICAL METHOD AND THEORY 2021; 28:53-75. [PMID: 33679119 PMCID: PMC7891228 DOI: 10.1007/s10816-020-09503-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 12/15/2020] [Indexed: 05/13/2023]
Abstract
UNLABELLED Archaeological evidence suggests that important shifts were taking place in the character of human social behaviours 300,000 to 30,000 years ago. New artefact types appear and are disseminated with greater frequency. Transfers of both raw materials and finished artefacts take place over increasing distances, implying larger scales of regional mobility and more frequent and friendlier interactions between different communities. Whilst these changes occur during a period of increasing environmental variability, the relationship between ecological changes and transformations in social behaviours is elusive. Here, we explore a possible theoretical approach and methodology for understanding how ecological contexts can influence selection pressures acting on intergroup social behaviours. We focus on the relative advantages and disadvantages of intergroup tolerance in different ecological contexts using agent-based modelling (ABM). We assess the relative costs and benefits of different 'tolerance' levels in between-group interactions on survival and resource exploitation in different environments. The results enable us to infer a potential relationship between ecological changes and proposed changes in between-group behavioural dynamics. We conclude that increasingly harsh environments may have driven changes in hormonal and emotional responses in humans leading to increasing intergroup tolerance, i.e. transformations in social behaviour associated with 'self-domestication'. We argue that changes in intergroup tolerance is a more parsimonious explanation for the emergence of what has been seen as 'modern human behaviour' than changes in hard aspects of cognition or other factors such as cognitive adaptability or population size. SUPPLEMENTARY INFORMATION The online version contains supplementary material available at 10.1007/s10816-020-09503-5.
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Affiliation(s)
- Penny Spikins
- Department of Archaeology, Archaeology PalaeoHub, University of York, York, YO10 5DD UK
| | - Jennifer C. French
- Department of Archaeology, Classics, and Egyptology, University of Liverpool, Liverpool, L69 7WZ UK
| | - Seren John-Wood
- York Cross-disciplinary Centre for Systems Analysis (YCCSA) Internship Programme, University of York, York, UK
- University College London, London, UK
| | - Calvin Dytham
- Department of Biology, University of York, York, YO10 5DD UK
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14
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Thompson JC, Wright DK, Ivory SJ. The emergence and intensification of early hunter-gatherer niche construction. Evol Anthropol 2020; 30:17-27. [PMID: 33341104 DOI: 10.1002/evan.21877] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Revised: 03/31/2020] [Accepted: 08/30/2020] [Indexed: 01/13/2023]
Abstract
Hunter-gatherers, especially Pleistocene examples, are not well-represented in archeological studies of niche construction. However, as the role of humans in shaping environments over long time scales becomes increasingly apparent, it is critical to develop archeological proxies and testable hypotheses about early hunter-gatherer impacts. Modern foragers engage in niche constructive behaviors aimed at maintaining or increasing the productivity of their environments, and these may have had significant ecological consequences over later human evolution. In some cases, they may also represent behaviors unique to modern Homo sapiens. Archeological and paleoenvironmental data show that African hunter-gatherers were niche constructors in diverse environments, which have legacies in how ecosystems function today. These can be conceptualized as behaviorally mediated trophic cascades, and tested using archeological and paleoenvironmental proxies. Thus, large-scale niche construction behavior is possible to identify at deeper time scales, and may be key to understanding the emergence of modern humans.
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Affiliation(s)
- Jessica C Thompson
- Department of Anthropology, Yale University, New Haven, Connecticut, USA
| | - David K Wright
- Department of Archaeology, Conservation and History, University of Oslo, Oslo, Norway.,State Key Laboratory of Loess and Quaternary Geology, Institute of Earth Environment, Chinese Academy of Sciences, Xi'an, China
| | - Sarah J Ivory
- Department of Geosciences and Earth and Environmental Sciences Institute, Pennsylvania State University, University Park, Pennsylvania, USA
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15
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Andermann T, Faurby S, Turvey ST, Antonelli A, Silvestro D. The past and future human impact on mammalian diversity. SCIENCE ADVANCES 2020; 6:6/36/eabb2313. [PMID: 32917612 PMCID: PMC7473673 DOI: 10.1126/sciadv.abb2313] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/09/2020] [Accepted: 07/16/2020] [Indexed: 05/18/2023]
Abstract
To understand the current biodiversity crisis, it is crucial to determine how humans have affected biodiversity in the past. However, the extent of human involvement in species extinctions from the Late Pleistocene onward remains contentious. Here, we apply Bayesian models to the fossil record to estimate how mammalian extinction rates have changed over the past 126,000 years, inferring specific times of rate increases. We specifically test the hypothesis of human-caused extinctions by using posterior predictive methods. We find that human population size is able to predict past extinctions with 96% accuracy. Predictors based on past climate, in contrast, perform no better than expected by chance, suggesting that climate had a negligible impact on global mammal extinctions. Based on current trends, we predict for the near future a rate escalation of unprecedented magnitude. Our results provide a comprehensive assessment of the human impact on past and predicted future extinctions of mammals.
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Affiliation(s)
- Tobias Andermann
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden.
- Gothenburg Global Biodiversity Centre, Göteborg, Sweden
| | - Søren Faurby
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden
- Gothenburg Global Biodiversity Centre, Göteborg, Sweden
| | - Samuel T Turvey
- Institute of Zoology, Zoological Society of London, London, UK
| | - Alexandre Antonelli
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden
- Gothenburg Global Biodiversity Centre, Göteborg, Sweden
- Royal Botanic Gardens, Kew, Richmond, UK
| | - Daniele Silvestro
- Department of Biological and Environmental Sciences, University of Gothenburg, Göteborg, Sweden
- Gothenburg Global Biodiversity Centre, Göteborg, Sweden
- Department of Biology, University of Fribourg, Fribourg, Switzerland
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16
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Balisi MA, Van Valkenburgh B. Iterative evolution of large-bodied hypercarnivory in canids benefits species but not clades. Commun Biol 2020; 3:461. [PMID: 32826954 PMCID: PMC7442796 DOI: 10.1038/s42003-020-01193-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Accepted: 07/30/2020] [Indexed: 11/08/2022] Open
Abstract
Ecological specialization has costs and benefits at various scales: traits benefitting an individual may disadvantage its population, species or clade. In particular, large body size and hypercarnivory (diet over 70% meat) have evolved repeatedly in mammals; yet large hypercarnivores are thought to be trapped in a macroevolutionary "ratchet", marching unilaterally toward decline. Here, we weigh the impact of this specialization on extinction risk using the rich fossil record of North American canids (dogs). In two of three canid subfamilies over the past 40 million years, diversification of large-bodied hypercarnivores appears constrained at the clade level, biasing specialized lineages to extinction. However, despite shorter species durations, extinction rates of large hypercarnivores have been mostly similar to those of all other canids. Extinction was size- and carnivory-selective only at the end of the Pleistocene epoch 11,000 years ago, suggesting that large hypercarnivores were not disadvantaged at the species level before anthropogenic influence.
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Affiliation(s)
- Mairin A Balisi
- La Brea Tar Pits and Museum, Los Angeles, CA, 90036, USA.
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA.
- Department of Vertebrate Paleontology, Natural History Museum of Los Angeles County, Los Angeles, CA, 90007, USA.
- Department of Life and Environmental Sciences, University of California, Merced, CA, 95343, USA.
| | - Blaire Van Valkenburgh
- Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, 90095, USA
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