1
|
Su X, Huang X, Zhang Y, Yang L, Wen T, Yang X, Zhu G, Zhang J, Tang Y, Li Z, Ding J, Li R, Pan J, Chen X, Huang F, Rillig MC, Zhu YG. Nitrifying niche in estuaries is expanded by the plastisphere. Nat Commun 2024; 15:5866. [PMID: 38997249 PMCID: PMC11245476 DOI: 10.1038/s41467-024-50200-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2023] [Accepted: 07/02/2024] [Indexed: 07/14/2024] Open
Abstract
The estuarine plastisphere, a novel ecological habitat in the Anthropocene, has garnered global concerns. Recent geochemical evidence has pointed out its potential role in influencing nitrogen biogeochemistry. However, the biogeochemical significance of the plastisphere and its mechanisms regulating nitrogen cycling remain elusive. Using 15N- and 13C-labelling coupled with metagenomics and metatranscriptomics, here we unveil that the plastisphere likely acts as an underappreciated nitrifying niche in estuarine ecosystems, exhibiting a 0.9 ~ 12-fold higher activity of bacteria-mediated nitrification compared to surrounding seawater and other biofilms (stone, wood and glass biofilms). The shift of active nitrifiers from O2-sensitive nitrifiers in the seawater to nitrifiers with versatile metabolisms in the plastisphere, combined with the potential interspecific cooperation of nitrifying substrate exchange observed among the plastisphere nitrifiers, collectively results in the unique nitrifying niche. Our findings highlight the plastisphere as an emerging nitrifying niche in estuarine environment, and deepen the mechanistic understanding of its contribution to marine biogeochemistry.
Collapse
Affiliation(s)
- Xiaoxuan Su
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
- Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo, China
- Interdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, Southwest University, Chongqing, 400715, China
| | - Xinrong Huang
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
- Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo, China
- University of the Chinese Academy of Sciences, 19A Yuquan Road, 100049, Beijing, China
| | - Yiyue Zhang
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
- Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo, China
| | - Leyang Yang
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
- Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo, China
- University of the Chinese Academy of Sciences, 19A Yuquan Road, 100049, Beijing, China
| | - Teng Wen
- School of Geography, Nanjing Normal University, Nanjing, 210023, China
| | - Xiaoru Yang
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
- Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo, China
- University of the Chinese Academy of Sciences, 19A Yuquan Road, 100049, Beijing, China
| | - Guibing Zhu
- University of the Chinese Academy of Sciences, 19A Yuquan Road, 100049, Beijing, China
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085, Beijing, China
| | - Jinbo Zhang
- School of Geography, Nanjing Normal University, Nanjing, 210023, China
- Liebig Centre for Agroecology and Climate Impact Research, Justus Liebig University, Gießen, Germany
| | - Yijia Tang
- School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2015, Australia
| | - Zhaolei Li
- Interdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, Southwest University, Chongqing, 400715, China
| | - Jing Ding
- School of Environmental and Material Engineering, Yantai University, Yantai, 264005, China
| | - Ruilong Li
- School of Marine Science, Guangxi University, Nanning, 530004, China
| | - Junliang Pan
- School of Electrical Engineering, Chongqing University, Chongqing, 400044, China
| | - Xinping Chen
- Interdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, Southwest University, Chongqing, 400715, China
| | - Fuyi Huang
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China
- Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo, China
| | - Matthias C Rillig
- Freie Universität Berlin, Institute of Biology, Berlin, Germany
- Berlin-Brandenburg Institute of Advanced Biodiversity Research, Berlin, Germany
| | - Yong-Guan Zhu
- Key Laboratory of Urban Environment and Health, Ningbo Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, China.
- Zhejiang Key Laboratory of Urban Environmental Processes and Pollution Control, CAS Haixi Industrial Technology Innovation Center in Beilun, Ningbo, China.
- University of the Chinese Academy of Sciences, 19A Yuquan Road, 100049, Beijing, China.
- Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, 100085, Beijing, China.
| |
Collapse
|
2
|
Sadiq M, Rahim N, Tahir MM, Alasmari A, Alqahtani MM, Albogami A, Ghanem KZ, Abdein MA, Ali M, Mehmood N, Yuan J, Shaheen A, Shehzad M, El-Sayed MH, Chen G, Li G. Conservation tillage: a way to improve yield and soil properties and decrease global warming potential in spring wheat agroecosystems. Front Microbiol 2024; 15:1356426. [PMID: 38894971 PMCID: PMC11183815 DOI: 10.3389/fmicb.2024.1356426] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 04/15/2024] [Indexed: 06/21/2024] Open
Abstract
Climate change is one of the main challenges, and it poses a tough challenge to the agriculture industry globally. Additionally, greenhouse gas (GHG) emissions are the main contributor to climate change; however, croplands are a prominent source of GHG emissions. Yet this complex challenge can be mitigated through climate-smart agricultural practices. Conservation tillage is commonly known to preserve soil and mitigate environmental change by reducing GHG emissions. Nonetheless, there is still a paucity of information on the influences of conservation tillage on wheat yield, soil properties, and GHG flux, particularly in the semi-arid Dingxi belt. Hence, in order to fill this gap, different tillage systems, namely conventional tillage (CT) control, straw incorporation with conventional tillage (CTS), no-tillage (NT), and stubble return with no-tillage (NTS), were laid at Dingxi, Gansu province of China, under a randomized complete block design with three replications to examine their impacts on yield, soil properties, and GHG fluxes. Results depicted that different conservative tillage systems (CTS, NTS, and NT) significantly (p < 0.05) increased the plant height, number of spikes per plant, seed number per meter square, root yield, aboveground biomass yield, thousand-grain weight, grain yield, and dry matter yield compared with CT. Moreover, these conservation tillage systems notably improved the soil properties (soil gravimetric water content, water-filled pore space, water storage, porosity, aggregates, saturated hydraulic conductivity, organic carbon, light fraction organic carbon, carbon storage, microbial biomass carbon, total nitrogen, available nitrogen storage, microbial biomass nitrogen, total phosphorous, available phosphorous, total potassium, available potassium, microbial counts, urease, alkaline phosphatase, invertase, cellulase, and catalase) while decreasing the soil temperature and bulk density over CT. However, CTS, NTS, and NT had non-significant effects on ECe, pH, and stoichiometric properties (C:N ratio, C:P ratio, and N:P ratio). Additionally, conservation-based tillage regimes NTS, NT, and CTS significantly (p < 0.05) reduced the emission and net global warming potential of greenhouse gases (carbon dioxide, methane, and nitrous oxide) by 23.44, 19.57, and 16.54%, respectively, and decreased the greenhouse gas intensity by 23.20, 29.96, and 18.72%, respectively, over CT. We conclude that NTS is the best approach to increasing yield, soil and water conservation, resilience, and mitigation of agroecosystem capacity.
Collapse
Affiliation(s)
- Mahran Sadiq
- College of Forestry, Gansu Agricultural University, Lanzhou, China
- Department of Soil and Environmental Sciences, University of Poonch Rawalakot, Rawalakot, Pakistan
- College of Grassland Science, Gansu Agricultural University, Lanzhou, China
| | - Nasir Rahim
- Department of Soil and Environmental Sciences, University of Poonch Rawalakot, Rawalakot, Pakistan
| | - Majid Mahmood Tahir
- Department of Soil and Environmental Sciences, University of Poonch Rawalakot, Rawalakot, Pakistan
| | | | - Mesfer M. Alqahtani
- Department of Biological Sciences, Faculty of Science and Humanities, Shaqra University, Ad-Dawadimi, Saudi Arabia
| | - Abdulaziz Albogami
- Biology Department, Faculty of Science, Al-Baha University, Alaqiq, Saudi Arabia
| | - Kholoud Z. Ghanem
- Department of Biological Science, College of Science & Humanities, Shaqra University, Riyadh, Saudi Arabia
| | - Mohamed A. Abdein
- Seeds Development Department, El-Nada Misr Scientific Research and Development Projects, Turrell, Mansoura, Egypt
| | - Mohammed Ali
- Maryout Research Station, Genetic Resources Department, Desert Research Center, Cairo, Egypt
| | - Nasir Mehmood
- College of Horticulture and the Fujian provincial Key Laboratory of Plant Functional Biology, Fujian Agricultural and Forestry University, Fuzhou, China
| | - Jianyu Yuan
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| | - Aqila Shaheen
- Department of Soil and Environmental Sciences, University of Poonch Rawalakot, Rawalakot, Pakistan
| | - Muhammad Shehzad
- Department of Agronomy, University of Poonch Rawalakot, Rawalakot, Pakistan
| | - Mohamed H. El-Sayed
- Department of Biology, College of Sciences and Arts-Rafha, Northern Border University, Arar, Saudi Arabia
| | - Guoxiang Chen
- College of Grassland Science, Gansu Agricultural University, Lanzhou, China
| | - Guang Li
- College of Forestry, Gansu Agricultural University, Lanzhou, China
| |
Collapse
|
3
|
Li X, Qi M, Li Q, Wu B, Fu Y, Liang X, Yin G, Zheng Y, Dong H, Liu M, Hou L. Acidification Offset Warming-Induced Increase in N 2O Production in Estuarine and Coastal Sediments. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2024; 58:4989-5002. [PMID: 38442002 DOI: 10.1021/acs.est.3c10691] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/07/2024]
Abstract
Global warming and acidification, induced by a substantial increase in anthropogenic CO2 emissions, are expected to have profound impacts on biogeochemical cycles. However, underlying mechanisms of nitrous oxide (N2O) production in estuarine and coastal sediments remain rarely constrained under warming and acidification. Here, the responses of sediment N2O production pathways to warming and acidification were examined using a series of anoxic incubation experiments. Denitrification and N2O production were largely stimulated by the warming, while N2O production decreased under the acidification as well as the denitrification rate and electron transfer efficiency. Compared to warming alone, the combination of warming and acidification decreased N2O production by 26 ± 4%, which was mainly attributed to the decline of the N2O yield by fungal denitrification. Fungal denitrification was mainly responsible for N2O production under the warming condition, while bacterial denitrification predominated N2O production under the acidification condition. The reduced site preference of N2O under acidification reflects that the dominant pathways of N2O production were likely shifted from fungal to bacterial denitrification. In addition, acidification decreased the diversity and abundance of nirS-type denitrifiers, which were the keystone taxa mediating the low N2O production. Collectively, acidification can decrease sediment N2O yield through shifting the responsible production pathways, partly counteracting the warming-induced increase in N2O emissions, further reducing the positive climate warming feedback loop.
Collapse
Affiliation(s)
- Xiaofei Li
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Mengting Qi
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Qiuxuan Li
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Boshuang Wu
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Yuxuan Fu
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Xia Liang
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Guoyu Yin
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Yanling Zheng
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Hongpo Dong
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Min Liu
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai 200241, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| |
Collapse
|
4
|
Gan X, Hu H, Fu Q, Zhu J. Nitrate reduction coupling with As(III) oxidation in neutral As-contaminated paddy soil preserves nitrogen, reduces N 2O emissions and alleviates As toxicity. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169360. [PMID: 38104836 DOI: 10.1016/j.scitotenv.2023.169360] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2023] [Revised: 11/29/2023] [Accepted: 12/11/2023] [Indexed: 12/19/2023]
Abstract
In arsenic (As)-contaminated paddy soil, microbial-driven nitrate (NO3-) reduction coupled with arsenite (As(III)) oxidation can reduce As toxicity, but the whereabouts of NO3- remain unclear. In this study, the experiments were established using selective streptomycin (STP) and cyclohexylamine to inhibit bacterial and fungal functional responses, respectively, and metagenomic sequencing techniques were used to explain the biological mechanisms of NO3- reduction coupled with As(III) oxidation in neutral As-contaminated paddy soil. The results indicated that fungal denitrification resulted in stronger nitrous oxide (N2O) emissions (321.6 μg kg-1) than bacterial denitrification (175.9 μg kg-1) in neutral As-contaminated paddy soil, but NO3- reduction coupled with As(III) oxidation reduced the N2O emissions. Only adding STP led to ammonium (NH4+) generation (17.7 mg kg-1), and simultaneously more NH4+ appeared in NO3- reduction coupled with As(III) oxidation; this may be because it improved the electron transfer efficiency by 18.2 %. Achromobacter was involved in denitrification coupled with As(III) oxidation. Burkholderiales was responsible for NO3- reduction to NH4+ coupled with As(III) oxidation. This study provided a theoretical basis for NO3- reduction coupled with As(III) oxidation reducing N2O emissions, promoting the reduction of NO3- to NH4+, and reducing As toxicity in paddy soil.
Collapse
Affiliation(s)
- Xuelian Gan
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtse River), Ministry of Agriculture and Rural Affairs, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Hongqing Hu
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtse River), Ministry of Agriculture and Rural Affairs, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Qingling Fu
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtse River), Ministry of Agriculture and Rural Affairs, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China.
| | - Jun Zhu
- Key Laboratory of Arable Land Conservation (Middle and Lower Reaches of Yangtse River), Ministry of Agriculture and Rural Affairs, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| |
Collapse
|
5
|
Liu S, Gao Q, Wu J, Xie Y, Yang Q, Wang R, Cui Y. The concentration of CH 4, N 2O and CO 2 in the Pearl River estuary increased significantly due to the sediment particle resuspension and the interaction of hypoxia. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 911:168795. [PMID: 37996023 DOI: 10.1016/j.scitotenv.2023.168795] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 11/02/2023] [Accepted: 11/20/2023] [Indexed: 11/25/2023]
Abstract
Hypoxia and sediment particle resuspension (SPR) alter the biogeochemical cycle of estuarine and coastal seas, which in turn affects the production and emission of methane (CH4), nitrous oxide (N2O) and carbon dioxide (CO2) greenhouse gases (GHGs) in estuaries. Despite the importance of CH4, N2O and CO2 in estuarine ecosystems, little is known about their magnitude and spatiotemporal variation under the combined influence of hypoxia and SPR. This study utilized continuous mooring observations to investigate the temporal and spatial variations of GHGs before and after hypoxia in the Pearl River Estuary (PRE). The results showed that the concentration of GHGs in the water column increased significantly following hypoxia as compared to its absence. The synergistic effect of SPR and hypoxia significantly enhances GHGs production and accumulation in bottom water. Anaerobic mineralization of organic matter (OM) in an environment with severely low dissolved oxygen (DO) is the primary determinant for increased CH4 concentration, while OM and CH4 oxidation are the main drivers for maintaining high CO2 concentration in subsurface water. Hypoxic development enhanced denitrification N2O production in the water column. The presence of SPR enhanced oxygen-consuming coupled hypoxia significantly stimulated the increase of CH4, N2O and CO2 concentrations in the water column. Hypoxic development results in an increased water-air GHGs flux, but this effect may be masked by runoff plumes with high GHGs concentrations in the regions near the river outlets. This study highlights that hypoxia leads to significant increases in anaerobic GHGs production and subsequent emissions from estuarine water columns.
Collapse
Affiliation(s)
- Shuangyuan Liu
- School of Geography and Planning, Sun Yat-sen University, Guangzhou 510006, China
| | - Quanzhou Gao
- School of Geography and Planning, Sun Yat-sen University, Guangzhou 510006, China; Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519080, China.
| | - Jiaxue Wu
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Zhuhai 519080, China; School of Marine Sciences, Sun Yat-sen University, Guangzhou 510275, China
| | - Yuting Xie
- School of Geography and Planning, Sun Yat-sen University, Guangzhou 510006, China
| | - Qianqian Yang
- School of Geography and Planning, Sun Yat-sen University, Guangzhou 510006, China
| | - Ruowen Wang
- School of Geography and Planning, Sun Yat-sen University, Guangzhou 510006, China
| | - Yongsheng Cui
- Guangdong Center for Marine Development Research, Guangzhou 510220, China
| |
Collapse
|
6
|
Dairain A, Voet H, Vafeiadou AM, De Meester N, Rigaux A, Van Colen C, Vanaverbeke J, Moens T. Structurally stable but functionally disrupted marine microbial communities under a future climate change scenario: Potential importance for nitrous oxide emissions. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 907:167928. [PMID: 37863213 DOI: 10.1016/j.scitotenv.2023.167928] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/23/2023] [Revised: 10/05/2023] [Accepted: 10/16/2023] [Indexed: 10/22/2023]
Abstract
The blue mussel Mytilus edulis is a widespread and abundant bivalve species along the North Sea with high economic and ecological importance as an engineer species. The shell of mussels is intensively colonized by microbial organisms that can produce significant quantities of nitrous oxide (N2O), a potent greenhouse gas. To characterize the impacts of climate change on the composition, structure and functioning of microbial biofilms on the shell surface of M. edulis, we experimentally exposed them to orthogonal combinations of increased seawater temperature (20 vs. 23 °C) and decreased pH (8.0 vs. 7.7) for six weeks. We used amplicon sequencing of the 16S rRNA gene to characterize the alpha and beta diversity of microbial communities on the mussel shell. The functioning of microbial biofilms was assessed by measuring aerobic respiration and nitrogen emission rates. We did not report any significant impacts of climate change treatments on the diversity of mussel microbiomes nor on the structure of these communities. Lowered pH and increased temperature had antagonistic effects on the functioning of microbial communities with decreased aerobic respiration and N2O emission rates of microbial biofilms in acidified seawater compared to increased rates in warmer conditions. An overriding impact of acidification over warming was finally observed on N2O emissions when the two factors were combined. Although acidification and warming in combination significantly reduced N2O biofilm emissions, the promotion of aquaculture activities in coastal waters where shellfish do not normally occur at high biomass and density could nonetheless result in unwanted emissions of this greenhouse gas in a near future.
Collapse
Affiliation(s)
- Annabelle Dairain
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium; Sorbonne Université, CNRS, Station Biologique de Roscoff, UMR7144, Adaptation et Diversité en Milieu Marin, Place Georges Teissier, CS90074, 29688 Roscoff Cedex, France.
| | - Helena Voet
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium; Royal Belgian Institute of Natural Sciences, Operational Directorate Natural Environment, Marine Ecology and Management, Vautierstraat 29, Brussels 1000, Belgium
| | - Anna-Maria Vafeiadou
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium
| | - Nele De Meester
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium
| | - Annelien Rigaux
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium
| | - Carl Van Colen
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium
| | - Jan Vanaverbeke
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium; Royal Belgian Institute of Natural Sciences, Operational Directorate Natural Environment, Marine Ecology and Management, Vautierstraat 29, Brussels 1000, Belgium
| | - Tom Moens
- Marine Biology Research Group, Department of Biology, Ghent University, Krijgslaan 281/S8, Ghent 9000, Belgium
| |
Collapse
|
7
|
Ma X, Li Y, Wang L, Niu L, Shang J, Zheng J. Hypoxia and salinity constrain the sediment microbiota-mediated N removal potential in an estuary: A multi-trophic interrelationship perspective. WATER RESEARCH 2024; 248:120872. [PMID: 38006831 DOI: 10.1016/j.watres.2023.120872] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 10/27/2023] [Accepted: 11/13/2023] [Indexed: 11/27/2023]
Abstract
Reactive nitrogen (N) enrichment is a common environmental problem in estuarine ecosystems, while the microbial-mediated N removal process is complicated for other multi-environmental factors. Therefore, A systematic investigation is necessary to understand the multi-trophic microbiota-mediated N removal characteristics under various environmental factors in estuaries. Here, we studied how multiple factors affect the multi-trophic microbiota-mediated N removal potential (denitrification and anammox) and N2O emission along a river-estuary-bay continuum in southeastern China using the environmental DNA (eDNA) approach. Results suggested that hypoxia and salinity were the dominant environmental factors affecting multi-trophic microbiota-mediated N removal in the estuary. The synergistic effect of hypoxia and salinity contributed to the loss of taxonomic (MultiTaxa) and phylogenetic (MultiPhyl) diversity across multi-trophic microbiota and enhanced the interdependence among multi-trophic microbiota in the estuary. The N removal potential calculated as the activities of key N removal enzymes was also significantly constrained in the estuary (0.011), compared with the river (0.257) and bay (0.461). Structural equation modeling illustrated that metazoans were central to all sediment N removal potential regulatory pathways. The top-down forces (predation by metazoans) restrained the growth of heterotrophic bacteria, which may affect microbial N removal processes in the sediment. Furthermore, we found that the hypoxia and salinity exacerbated the N2O emission in the estuary. This study clarifies that hypoxia and salinity constrain estuarine multi-trophic microbiota-mediated N removal potential and highlights the important role of multi-trophic interactions in estuarine N removal, providing a new perspective on mitigating estuarine N accumulation.
Collapse
Affiliation(s)
- Xin Ma
- College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Yi Li
- College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China; Research Institute of Mulan Ecological River, Putian 351100, China.
| | - Linqiong Wang
- College of Oceanography, Hohai University, Nanjing 210098, China
| | - Lihua Niu
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China; Research Institute of Mulan Ecological River, Putian 351100, China.
| | - Jiahui Shang
- Key Laboratory of Integrated Regulation and Resource Development on Shallow Lakes, Ministry of Education, College of Environment, Hohai University, Nanjing 210098, China
| | - Jinhai Zheng
- College of Harbour, Coastal and Offshore Engineering, Hohai University, Nanjing 210098, China; Research Institute of Mulan Ecological River, Putian 351100, China
| |
Collapse
|
8
|
Qiu L, Gou X, Kong Y, Tu F, Peng X, Xu L, Zhou S, Huang C, Chen Y, Liu L, Tu L. Nitrogen addition stimulates N 2O emissions via changes in denitrification community composition in a subtropical nitrogen-rich forest. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 348:119274. [PMID: 37890399 DOI: 10.1016/j.jenvman.2023.119274] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 10/04/2023] [Indexed: 10/29/2023]
Abstract
Microbially driven nitrification and denitrification play important roles in regulating soil N availability and N2O emissions. However, how the composition of nitrifying and denitrifying prokaryotic communities respond to long-term N additions and regulate soil N2O emissions in subtropical forests remains unclear. Seven years of field experiment which included three N treatments (+0, +50, +150 kg N ha-1 yr-1; CK, LN, HN) was conducted in a subtropical forest. Soil available nutrients, N2O emissions, net N mineralization, denitrification potential and enzyme activities, and the composition and diversity of nitrifying and denitrifying communities were measured. Soil N2O emissions from the LN and HN treatments increased by 42.37% and 243.32%, respectively, as compared to the CK. Nitrogen addition significantly inhibited nitrification (N mineralization) and significantly increased denitrification potentials and enzymes. Nitrification and denitrification abundances (except nirK) were significantly lower in the HN, than CK treatment and were not significantly correlated with N2O emissions. Nitrogen addition significantly increased nirK abundance while maintaining the positive effects of denitrification and N2O emissions to N deposition, challenging the conventional wisdom that long-term N addition reduces N2O emissions by inhibiting microbial growth. Structural equation modeling showed that the composition, diversity, and abundance of nirS- and nirK-type denitrifying prokaryotic communities had direct effects on N2O emissions. Mechanistic investigations have revealed that denitrifier keystone taxa transitioned from N2O-reducing (complete denitrification) to N2O-producing (incomplete denitrification) with increasing N addition, increasing structural complexity and diversity of the denitrifier co-occurrence network. These results significantly advance current understanding of the relationship between denitrifying community composition and N2O emissions, and highlight the importance of incorporating denitrifying community dynamics and soil environmental factors together in models to accurately predict key ecosystem processes under global change.
Collapse
Affiliation(s)
- Lingjun Qiu
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Xin Gou
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Yuemei Kong
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Fangyang Tu
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Xia Peng
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Lin Xu
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Shixing Zhou
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Congde Huang
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Yuqin Chen
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Li Liu
- Maize Research Institute, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China
| | - Lihua Tu
- National Forestry and Grassland Administration Key Laboratory of Forest Resources Conservation and Ecological Safety on the Upper Reaches of the Yangtze River, Forestry Ecological Engineering in the Upper Reaches of the Yangtze River Key Laboratory of Sichuan Province, College of Forestry, Sichuan Agricultural University, Chengdu, Sichuan, 611130, China.
| |
Collapse
|
9
|
Sun X, Tan E, Wang B, Gan Z, Yang J, Han J, Zhang X, Kao SJ, King G, Dong H, Jiang H. Salinity change induces distinct climate feedbacks of nitrogen removal in saline lakes. WATER RESEARCH 2023; 245:120668. [PMID: 37776589 DOI: 10.1016/j.watres.2023.120668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 08/19/2023] [Accepted: 09/24/2023] [Indexed: 10/02/2023]
Abstract
Current estimations of nitrogen biogeochemical cycling and N2O emissions in global lakes as well as predictions of their future changes are overrepresented by freshwater datasets, while less consideration is given to widespread saline lakes with different salinity (representing salinization or desalinization). Here, we show that N2O production by denitrification is the main process of reactive nitrogen (Nr, the general abbreviations of NH4+-N, NO2--N and NO3--N) removal in hypersaline lake sediments (e.g. Lake Chaka). The integration of our field measurements and literature data shows that in response to natural salinity decrease, potential Nr removal increases while N2O production decreases. Furthermore, denitrification-induced N2 production exhibits higher salinity sensitivity than denitrification-induced N2O production, suggesting that the contribution of N2O to Nr removal decreases with decreasing salinity. This field-investigation-based salinity response model of Nr removal indicates that under global climate change, saline lakes in the process of salinization or desalination may have distinct Nr removal and climate feedback effects: salinized lakes tend to generate a positive climate feedback, while desalinated lakes show a negative feedback. Therefore, salinity change should be considered as an important factor in assessing future trend of N2O emissions from lakes under climate change.
Collapse
Affiliation(s)
- Xiaoxi Sun
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, 430074, China; Key Laboratory of Salt Lake Geology and Environment of Qinghai Province, Qinghai Institute of Salt Lakes, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Xining 810008, China
| | - Ehui Tan
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, 570228, China
| | - Beichen Wang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, 430074, China
| | - Zixuan Gan
- College of Agricultural and Environmental Sciences, University of California, Davis, Davis, CA 95616-5270, United States of America
| | - Jian Yang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, 430074, China
| | - Jibin Han
- Key Laboratory of Salt Lake Geology and Environment of Qinghai Province, Qinghai Institute of Salt Lakes, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Xining 810008, China
| | - Xiying Zhang
- Key Laboratory of Salt Lake Geology and Environment of Qinghai Province, Qinghai Institute of Salt Lakes, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Xining 810008, China
| | - Shuh-Ji Kao
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, 570228, China; State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361102, China
| | - Gary King
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, United States of America
| | - Hailiang Dong
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Beijing, 100083, China; Frontiers Science Center for Deep-time Digital Earth, China University of Geosciences (Beijing), Beijing 100083, China
| | - Hongchen Jiang
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan, 430074, China; Key Laboratory of Salt Lake Geology and Environment of Qinghai Province, Qinghai Institute of Salt Lakes, Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Xining 810008, China; Frontiers Science Center for Deep-time Digital Earth, China University of Geosciences (Beijing), Beijing 100083, China.
| |
Collapse
|
10
|
Chen C, Yin G, Li Q, Gu Y, Sun D, An S, Liang X, Li X, Zheng Y, Hou L, Liu M. Effects of microplastics on denitrification and associated N 2O emission in estuarine and coastal sediments: insights from interactions between sulfate reducers and denitrifiers. WATER RESEARCH 2023; 245:120590. [PMID: 37703755 DOI: 10.1016/j.watres.2023.120590] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/26/2023] [Revised: 09/04/2023] [Accepted: 09/05/2023] [Indexed: 09/15/2023]
Abstract
Global estuarine and coastal zones are facing severe microplastics (MPs) pollution. Sulfate reducers (SRB) and denitrifiers (DNB) are two key functional microorganisms in these zones, exhibiting intricate interactions. However, whether and how MPs modulate the interactions between SRB and DNB, with implications for denitrification and associated N2O emissions, remains poorly understood. Here, we simultaneously investigated the spatial response patterns of SRB-DNB interactions and denitrification and associated N2O emissions to different MPs exposure along an estuarine gradient in the Yangtze Estuary. Spatial responses of denitrification to polyvinyl chloride (PVC) and polyadipate/butylene terephthalate (PBAT) MPs exposure were heterogeneous, while those of N2O emissions were not. Gradient-boosted regression tree and multiple regression model analyses showed that sulfide, followed by nitrate (NO3-), controlled the response patterns of denitrification to MPs exposure. Further mechanistic investigation revealed that exposure to MPs resulted in a competitive and toxic (sulfide accumulation) inhibition of SRB on DNB, ultimately inhibiting denitrification at upstream zones with high sulfide but low NO3- levels. Conversely, MPs exposure induced a competitive inhibition of DNB on SRB, generally promoting denitrification at downstream zones with low sulfide but high NO3- levels. These findings advance the current understanding of the impacts of MPs on nitrogen cycle in estuarine and coastal zones, and provide a novel insight for future studies exploring the response of biogeochemical cycles to MPs in various ecosystems.
Collapse
Affiliation(s)
- Cheng Chen
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China
| | - Guoyu Yin
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China.
| | - Qiuxuan Li
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China
| | - Youran Gu
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China
| | - Dongyao Sun
- School of Geography Science and Geomatics Engineering, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Soonmo An
- Department of Oceanography, College of Natural Sciences, Pusan National University, Busan 46241, Republic of Korea
| | - Xia Liang
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200241, China
| | - Xiaofei Li
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200241, China
| | - Yanling Zheng
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai, 200241, China
| | - Min Liu
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China; School of Geographic Sciences, East China Normal University, Shanghai, 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China.
| |
Collapse
|
11
|
Chen C, Yin G, Hou L, Jiang Y, Sun D, Liang X, Han P, Zheng Y, Liu M. Reclamation of tidal flats to paddy soils reshuffles the soil microbiomes along a 53-year reclamation chronosequence: Evidence from assembly processes, co-occurrence patterns and multifunctionality. ENVIRONMENT INTERNATIONAL 2023; 179:108151. [PMID: 37603994 DOI: 10.1016/j.envint.2023.108151] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Revised: 07/17/2023] [Accepted: 08/13/2023] [Indexed: 08/23/2023]
Abstract
Coastal soil microbiomes play a key role in coastal ecosystem functioning and are intensely threatened by land reclamation. However, the impacts of coastal reclamation on soil microbial communities, particularly on their assembly processes, co-occurrence patterns, and the multiple soil functions they support, remain poorly understood. This impedes our capability to comprehensively evaluate the impacts of coastal reclamation on soil microbiomes and to restore coastal ecosystem functions degraded by reclamation. Here, we investigated the temporal dynamics of bacterial and fungal communities, community assembly processes, co-occurrence patterns, and ecosystem multifunctionality along a 53-year chronosequence of paddy soil following reclamation from tidal flats. Reclamation of tidal flats to paddy soils resulted in decreased β-diversity, increased homogeneous selection, and decreased network complexity and robustness of both bacterial and fungal communities, but caused contrasting α-diversity response patterns of them. Reclamation of tidal flats to paddy soils also decreased the multifunctionality of coastal ecosystems, which was largely associated with the fungal network complexity and α-diversity. Collectively, this work demonstrates that coastal reclamation strongly reshaped the soil microbiomes at the level of assembly mechanisms, interaction patterns, and functionality level, and highlights that soil fungal community complexity should be considered as a key factor in restoring coastal ecosystem functions deteriorated by land reclamation.
Collapse
Affiliation(s)
- Cheng Chen
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China; School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai 200241, China
| | - Guoyu Yin
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China; School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai 200241, China.
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Yinghui Jiang
- School of Geography and Environment, Jiangxi Normal University, Nanchang, 330022 Jiangxi, China
| | - Dongyao Sun
- School of Geography Science and Geomatics Engineering, Suzhou University of Science and Technology, Suzhou 215009, China
| | - Xia Liang
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Ping Han
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China; School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai 200241, China
| | - Yanling Zheng
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China; School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai 200241, China
| | - Min Liu
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China; School of Geographic Sciences, East China Normal University, Shanghai 200241, China; Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai 200241, China.
| |
Collapse
|
12
|
Yang P, Tang KW, Zhang L, Lin X, Yang H, Tong C, Hong Y, Tan L, Lai DYF, Tian Y, Zhu W, Ruan M, Lin Y. Effects of landscape modification on coastal sediment nitrogen availability, microbial functional gene abundances and N 2O production potential across the tropical-subtropical gradient. ENVIRONMENTAL RESEARCH 2023; 227:115829. [PMID: 37011802 DOI: 10.1016/j.envres.2023.115829] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/22/2023] [Revised: 03/16/2023] [Accepted: 03/31/2023] [Indexed: 05/08/2023]
Abstract
Wetland sediment is an important nitrogen pool and a source of the greenhouse gas nitrous oxide (N2O). Modification of coastal wetland landscape due to plant invasion and aquaculture activities may drastically change this N pool and the related dynamics of N2O. This study measured the sediment properties, N2O production and relevant functional gene abundances in 21 coastal wetlands across five provinces along the tropical-subtropical gradient in China, which all had experienced the same sequence of habitat transformation from native mudflats (MFs) to invasive Spartina alterniflora marshes (SAs) and subsequently to aquaculture ponds (APs). Our results showed that change from MFs to SAs increased the availability of NH4+-N and NO3--N and the abundance of functional genes related to N2O production (amoA, nirK, nosZ Ⅰ, and nosZ Ⅱ), whereas conversion of SAs to APs resulted in the opposite changes. Invasion of MFs by S. alterniflora increased N2O production potential by 127.9%, whereas converting SAs to APs decreased it by 30.4%. Based on structural equation modelling, nitrogen substrate availability and abundance of ammonia oxidizers were the key factors driving the change in sediment N2O production potential in these wetlands. This study revealed the main effect patterns of habitat modification on sediment biogeochemistry and N2O production across a broad geographical and climate gradient. These findings will help large-scale mapping and assessing landscape change effects on sediment properties and greenhouse gas emissions along the coast.
Collapse
Affiliation(s)
- Ping Yang
- School of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, PR China; Institute of Geography, Fujian Normal University, Fuzhou, 350117, PR China; Fujian Provincial Key Laboratory for Subtropical Resources and Environment, Fujian Normal University, Fuzhou, 350117, PR China; Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, Fujian Normal University, Fuzhou, 350117, PR China.
| | - Kam W Tang
- Department of Biosciences, Swansea University, Swansea, SA2 8PP, UK
| | - Linhai Zhang
- School of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, PR China; Institute of Geography, Fujian Normal University, Fuzhou, 350117, PR China
| | - Xiao Lin
- School of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, PR China; Institute of Geography, Fujian Normal University, Fuzhou, 350117, PR China; Fujian Provincial Key Laboratory for Subtropical Resources and Environment, Fujian Normal University, Fuzhou, 350117, PR China
| | - Hong Yang
- College of Environmental Science and Engineering, Fujian Normal University, Fuzhou, 350007, China; Department of Geography and Environmental Science, University of Reading, Reading, RG6 6AB, UK
| | - Chuan Tong
- School of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, PR China; Institute of Geography, Fujian Normal University, Fuzhou, 350117, PR China; Key Laboratory of Humid Subtropical Eco-geographical Process of Ministry of Education, Fujian Normal University, Fuzhou, 350117, PR China.
| | - Yan Hong
- School of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, PR China
| | - Lishan Tan
- Department of Geography and Resource Management, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China
| | - Derrick Y F Lai
- Department of Geography and Resource Management, The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China.
| | - Yalan Tian
- School of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, PR China
| | - Wanyi Zhu
- School of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, PR China
| | - Manjing Ruan
- School of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, PR China
| | - Yongxin Lin
- School of Geographical Sciences, Fujian Normal University, Fuzhou, 350117, PR China; Institute of Geography, Fujian Normal University, Fuzhou, 350117, PR China; Fujian Provincial Key Laboratory for Subtropical Resources and Environment, Fujian Normal University, Fuzhou, 350117, PR China.
| |
Collapse
|
13
|
Shu W, Li F, Zhang Q, Li Z, Qiao Y, Audet J, Chen G. Pollution caused by mining reshaped the structure and function of bacterial communities in China's largest ion-adsorption rare earth mine watershed. JOURNAL OF HAZARDOUS MATERIALS 2023; 451:131221. [PMID: 36934702 DOI: 10.1016/j.jhazmat.2023.131221] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2023] [Revised: 02/21/2023] [Accepted: 03/14/2023] [Indexed: 06/18/2023]
Abstract
Ion-adsorption rare earth mining results in the production of high levels of nitrogen, multiple metals, and strong acidic mine drainage (AMD), the impacts of which on microbial assembly and ecological functions remain unclear. To address this knowledge gap, we collected river sediments from the watershed of China's largest ion-adsorption rare earth mine and analyzed the bacterial community's structure, function, and assembly mechanisms. Results showed that bacterial community assembly was weakly affected by spatial dispersion, and dispersal limitation and homogeneous selection were the dominant ecological processes, with the latter increasing with pollution gradients. Bacterial alpha diversity decreased with pollution, which was mainly influenced by lead (Pb), pH, rare earth elements (REEs), and electrical conductivity (EC). However, bacteria developed survival strategies (i.e., enhanced acid tolerance and interspecific competition) to adapt to extreme environments, sustaining species diversity and community stability. Community structure and function showed a consistent response to the polluted environment (r = 0.662, P = 0.001). Enhanced environmental selection reshaped key microbial-mediated biogeochemical processes in the mining area, in particular weakening the potential for microbial denitrification. These findings provide new insights into the ecological response of microbes to compound pollution and offer theoretical support for proposing effective remediation and management strategies for polluted areas.
Collapse
Affiliation(s)
- Wang Shu
- Shandong Yucheng Agro-Ecosystem National Observation and Research Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, 100101 Beijing, China; Sino-Danish College of University of Chinese Academy of Sciences, 101408 Beijing, China; Sino-Danish Centre for Education and Research, 101408 Beijing, China
| | - Fadong Li
- Shandong Yucheng Agro-Ecosystem National Observation and Research Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, 100101 Beijing, China; Sino-Danish College of University of Chinese Academy of Sciences, 101408 Beijing, China
| | - Qiuying Zhang
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, 100012 Beijing, China.
| | - Zhao Li
- Shandong Yucheng Agro-Ecosystem National Observation and Research Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, 100101 Beijing, China
| | - Yunfeng Qiao
- Shandong Yucheng Agro-Ecosystem National Observation and Research Station, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, 100101 Beijing, China
| | - Joachim Audet
- Department of Ecoscience, Aarhus University, C.F. Møllers Allé, 8000 Aarhus, Denmark
| | - Gang Chen
- Department of Civil and Environmental Engineering, Florida A&M University (FAMU)-Florida State University (FSU) Joint College of Engineering, 32310, United States
| |
Collapse
|
14
|
Zhou J, Zheng Y, Hou L, An Z, Chen F, Liu B, Wu L, Qi L, Dong H, Han P, Yin G, Liang X, Yang Y, Li X, Gao D, Li Y, Liu Z, Bellerby R, Liu M. Effects of acidification on nitrification and associated nitrous oxide emission in estuarine and coastal waters. Nat Commun 2023; 14:1380. [PMID: 36914644 PMCID: PMC10011576 DOI: 10.1038/s41467-023-37104-9] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/16/2022] [Accepted: 02/28/2023] [Indexed: 03/16/2023] Open
Abstract
In the context of an increasing atmospheric carbon dioxide (CO2) level, acidification of estuarine and coastal waters is greatly exacerbated by land-derived nutrient inputs, coastal upwelling, and complex biogeochemical processes. A deeper understanding of how nitrifiers respond to intensifying acidification is thus crucial to predict the response of estuarine and coastal ecosystems and their contribution to global climate change. Here, we show that acidification can significantly decrease nitrification rate but stimulate generation of byproduct nitrous oxide (N2O) in estuarine and coastal waters. By varying CO2 concentration and pH independently, an expected beneficial effect of elevated CO2 on activity of nitrifiers ("CO2-fertilization" effect) is excluded under acidification. Metatranscriptome data further demonstrate that nitrifiers could significantly up-regulate gene expressions associated with intracellular pH homeostasis to cope with acidification stress. This study highlights the molecular underpinnings of acidification effects on nitrification and associated greenhouse gas N2O emission, and helps predict the response and evolution of estuarine and coastal ecosystems under climate change and human activities.
Collapse
Affiliation(s)
- Jie Zhou
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, East China Normal University, Shanghai, 200241, China
| | - Yanling Zheng
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, East China Normal University, Shanghai, 200241, China. .,School of Geographic Sciences, East China Normal University, Shanghai, 200241, China. .,Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China. .,Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China.
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, East China Normal University, Shanghai, 200241, China.
| | - Zhirui An
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, East China Normal University, Shanghai, 200241, China
| | - Feiyang Chen
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, East China Normal University, Shanghai, 200241, China
| | - Bolin Liu
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, East China Normal University, Shanghai, 200241, China
| | - Li Wu
- School of Geographic Sciences, East China Normal University, Shanghai, 200241, China.,Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China
| | - Lin Qi
- School of Geographic Sciences, East China Normal University, Shanghai, 200241, China.,Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China
| | - Hongpo Dong
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, East China Normal University, Shanghai, 200241, China
| | - Ping Han
- School of Geographic Sciences, East China Normal University, Shanghai, 200241, China.,Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China.,Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China
| | - Guoyu Yin
- School of Geographic Sciences, East China Normal University, Shanghai, 200241, China.,Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China.,Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China
| | - Xia Liang
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, East China Normal University, Shanghai, 200241, China
| | - Yi Yang
- School of Geographic Sciences, East China Normal University, Shanghai, 200241, China.,Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China.,Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China
| | - Xiaofei Li
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, East China Normal University, Shanghai, 200241, China
| | - Dengzhou Gao
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, East China Normal University, Shanghai, 200241, China
| | - Ye Li
- School of Geographic Sciences, East China Normal University, Shanghai, 200241, China.,Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China.,Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China
| | - Zhanfei Liu
- The University of Texas at Austin Marine Science Institute, Port Aransas, TX, 78373, USA
| | - Richard Bellerby
- Norwegian Institute for Water Research, Thormøhlensgt 53D, 5006, Bergen, Norway
| | - Min Liu
- School of Geographic Sciences, East China Normal University, Shanghai, 200241, China. .,Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai, 200241, China. .,Key Laboratory of Spatial-temporal Big Data Analysis and Application of Natural Resources in Megacities, Ministry of Natural Resources, Shanghai, 200241, China.
| |
Collapse
|
15
|
Li X, Gao D, Li Y, Zheng Y, Dong H, Liang X, Liu M, Hou L. Increased Nitrogen Loading Facilitates Nitrous Oxide Production through Fungal and Chemodenitrification in Estuarine and Coastal Sediments. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2023; 57:2660-2671. [PMID: 36734984 DOI: 10.1021/acs.est.2c06602] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/18/2023]
Abstract
Estuarine and coastal environments are assumed to contribute to nitrous oxide (N2O) emissions under increasing nitrogen loading. However, isotopic and molecular mechanisms underlying N2O production pathways under elevated nitrogen concentration remain poorly understood. Here we used microbial inhibition, isotope mass balance, and molecular approaches to investigate N2O production mechanisms in estuarine and coastal sediments through a series of anoxic incubations. Site preference of the N2O molecule increased due to increasing nitrate concentration, suggesting the changes in N2O production pathways. Enhanced N2O production under high nitrate concentration was not mediated by bacterial denitrification, but instead was mainly regulated by fungal denitrification. Elevated nitrate concentration increased the contribution of fungal denitrification to N2O production by 11-25%, whereas it decreased bacterial N2O production by 16-33%. Chemodenitrification was also enhanced by high nitrate concentration, contributing to 13-28% of N2O production. Elevated nitrate concentration significantly mediated nirK-type denitrifiers structure and abundance, which are the keystone taxa driving N2O production. Collectively, these results suggest that increasing nitrate concentration can shift N2O production pathways from bacterial to fungal and chemodenitrification, which are mainly responsible for the enhanced N2O production and have widespread implications for N2O projections under ongoing nitrogen pollution in estuarine and coastal ecosystems.
Collapse
Affiliation(s)
- Xiaofei Li
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai200241, China
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai200241, China
| | - Dengzhou Gao
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai200241, China
| | - Ye Li
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai200241, China
| | - Yanling Zheng
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai200241, China
| | - Hongpo Dong
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai200241, China
| | - Xia Liang
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai200241, China
| | - Min Liu
- Key Laboratory of Geographic Information Science of the Ministry of Education, School of Geographic Sciences, East China Normal University, Shanghai200241, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai200241, China
| |
Collapse
|
16
|
Guo Y, Song B, Li A, Wu Q, Huang H, Li N, Yang Y, Adams JM, Yang L. Higher pH is associated with enhanced co-occurrence network complexity, stability and nutrient cycling functions in the rice rhizosphere microbiome. Environ Microbiol 2022; 24:6200-6219. [PMID: 36076153 DOI: 10.1111/1462-2920.16185] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 08/29/2022] [Indexed: 01/12/2023]
Abstract
The rice rhizosphere microbiota is crucial for crop yields and nutrient use efficiency. However, little is known about how co-occurrence patterns, keystone taxa and functional gene assemblages relate to soil pH in the rice rhizosphere soils. Using shotgun metagenome analysis, the rice rhizosphere microbiome was investigated across 28 rice fields in east-central China. At higher pH sites, the taxonomic co-occurrence network of rhizosphere soils was more complex and compact, as defined by higher average degree, graph density and complexity. Network stability was greatest at medium pH (6.5 < pH < 7.5), followed by high pH (7.5 < pH). Keystone taxa were more abundant at higher pH and correlated significantly with key ecosystem functions. Overall functional genes involved in C, N, P and S cycling were at a higher relative abundance in higher pH rhizosphere soils, excepting C degradation genes (e.g. key genes involved in starch, cellulose, chitin and lignin degradation). Our results suggest that the rice rhizosphere soil microbial network is more complex and stable at higher pH, possibly indicating increased efficiency of nutrient cycling. These observations may indicate routes towards more efficient soil management and understanding of the potential effects of soil acidification on the rice rhizosphere system.
Collapse
Affiliation(s)
- Yaping Guo
- School of Geography and Ocean Science, Nanjing University, Nanjing, People's Republic of China
| | - Bin Song
- School of Geography and Ocean Science, Nanjing University, Nanjing, People's Republic of China
| | - Anqi Li
- School of Geography and Ocean Science, Nanjing University, Nanjing, People's Republic of China
| | - Qi Wu
- School of Geography and Ocean Science, Nanjing University, Nanjing, People's Republic of China
| | - Haili Huang
- School of Geography and Ocean Science, Nanjing University, Nanjing, People's Republic of China
| | - Na Li
- School of Geography and Ocean Science, Nanjing University, Nanjing, People's Republic of China
| | - Ying Yang
- School of Geography and Ocean Science, Nanjing University, Nanjing, People's Republic of China
| | - Jonathan Miles Adams
- School of Geography and Ocean Science, Nanjing University, Nanjing, People's Republic of China
| | - Lin Yang
- School of Geography and Ocean Science, Nanjing University, Nanjing, People's Republic of China
| |
Collapse
|
17
|
Su X, Cui L, Tang Y, Wen T, Yang K, Wang Y, Zhang J, Zhu G, Yang X, Hou L, Zhu YG. Denitrification and N 2O Emission in Estuarine Sediments in Response to Ocean Acidification: From Process to Mechanism. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:14828-14839. [PMID: 36194569 DOI: 10.1021/acs.est.2c03550] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Global estuarine ecosystems are experiencing severe nitrogen pollution and ocean acidification (OA) simultaneously. Sedimentary denitrification is an important way of reactive nitrogen removal but at the same time leads to the emission of large amounts of nitrous oxide (N2O), a potent greenhouse gas. It is known that OA in estuarine regions could impact denitrification and N2O production; however, the underlying mechanism is still underexplored. Here, sediment incubation and pure culture experiments were conducted to explore the OA impacts on microbial denitrification and the associated N2O emissions in estuarine sediments. Under neutral (in situ) conditions, fungal N2O emission dominated in the sediment, while the bacterial and fungal sources had a similar role under acidification. This indicated that acidification decreased the sedimentary fungal denitrification and likely inhibited the activity of fungal denitrifiers. To explore molecular mechanisms, a denitrifying fungal strain of Penicillium janthinellum was isolated from the sediments. By using deuterium-labeled single-cell Raman spectroscopy and isobaric tags for relative and absolute quantitation proteomics, we found that acidification inhibited electron transfers in P. janthinellum and downregulated expressions of the proteins related to energy production and conservation. Two collaborative pathways of energy generation in the P. janthinellum were further revealed, that is, aerobic oxidative phosphorylation and TCA cycle and anoxic pyruvate fermentation. This indicated a distinct energy supply strategy from bacterial denitrification. Our study provides insights into fungi-mediated nitrogen cycle in acidifying aquatic ecosystems.
Collapse
Affiliation(s)
- Xiaoxuan Su
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen361021, China
- Interdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, College of Resources and Environment; Key Laboratory of Low-Carbon Green Agriculture in Southwestern China, Ministry of Agriculture and Rural Affairs, Southwest University, Chongqing400715, China
| | - Li Cui
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen361021, China
| | - Yijia Tang
- School of Life and Environmental Sciences, The University of Sydney, Biomedical Building (C81), Sydney, New South Wales2015, Australia
| | - Teng Wen
- School of Geography, Nanjing Normal University, Nanjing210023, China
- Key Laboratory of Virtual Geographic Environment, Ministry of Education, Nanjing Normal University, Nanjing210023, China
| | - Kai Yang
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen361021, China
| | - Yingmu Wang
- College of Civil Engineering, Fuzhou University, Fuzhou350116, China
| | - Jinbo Zhang
- School of Geography, Nanjing Normal University, Nanjing210023, China
- Key Laboratory of Virtual Geographic Environment, Ministry of Education, Nanjing Normal University, Nanjing210023, China
| | - Guibing Zhu
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing100085, China
| | - Xiaoru Yang
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen361021, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai200062, China
| | - Yong-Guan Zhu
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen361021, China
- State Key Laboratory of Urban and Regional Ecology, Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences, Beijing100085, China
- University of the Chinese Academy of Sciences, Beijing100049, China
| |
Collapse
|
18
|
Li L, Li F, Deng M, Wu C, Zhao X, Song K, Wu F. Microplastics distribution characteristics in typical inflow rivers of Taihu lake: Linking to nitrous oxide emission and microbial analysis. WATER RESEARCH 2022; 225:119117. [PMID: 36126427 DOI: 10.1016/j.watres.2022.119117] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2022] [Revised: 09/06/2022] [Accepted: 09/12/2022] [Indexed: 06/15/2023]
Abstract
The microplastics in nature water are important for the environmental fate of nitrous oxide (N2O). This study investigated the influence and microbial mechanism of microplastic abundance to the N2O flux in typical inflow rivers of Taihu lake. The microplastic abundance were in a range of 160-700 particles/m3 surface water, and 514-3018 particles/kg dry sediment. The highest percentage of microplastic color was transparent, significantly higher than other color (p<0.0001) in both surface water and sediment. The dominant microplastic size was 500-5000 μm in surface water, while size lower than 1000 μm was dominant in sediment. The microplastic abundance in sediment was negatively correlated with the concentration of suspended sediments (SPS) (p<0.05), Chl-a (p<0.05), NH4+-N (p<0.05) and TP (p<0.01) in inflow river surface water. The dissolved N2O concentration were 45.71-132.42 nmol/L, and the N2O fluxes were 29.85-276.60 μmol/m2/d. The dissolved N2O concentration was significantly correlated with the nirK abundance and nirK/nosZI ratio negatively (p<0.05), revealed that sediment nirK-type denitrification was the main driver of dissolved N2O. Meanwhile, the N2O flux (water-air interface) was significantly correlated with nosZI, napA, narG and nirS negatively, implied that nitrification and denitrification interaction in sediment is the main influence factor. The denitrification process in sediment was the main driven factor of N2O releasing. Mantel-test shows that microplastic abundance in surface water was significantly correlated with nitrification (p = 0.001∼0.01) and denitrification (p = 0.01∼0.05) genera in water. The dominant denitrification microorganism was Dechloromonas in sediment and Flavobacterium in surface water. These results provided new insight into the fact that plastisphere which comprises microbial community on microplastic could affect the N2O emission in aquatic system.
Collapse
Affiliation(s)
- Lu Li
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Fangbai Li
- Guangdong Key Laboratory of Integrated Agro-environmental Pollution Control and Management, Guangdong Institute of Eco-Environmental Science & Technology, Guangdong Academy of Sciences, Guangzhou 510650, China
| | - Min Deng
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
| | - Chenxi Wu
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaoli Zhao
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China
| | - Kang Song
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Fengchang Wu
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
| |
Collapse
|
19
|
Tan E, Hsu TC, Zou W, Yan X, Huang Z, Chen B, Chang Y, Zheng Z, Zheng L, Xu M, Tian L, Kao SJ. Quantitatively deciphering the roles of sediment nitrogen removal in environmental and climatic feedbacks in two subtropical estuaries. WATER RESEARCH 2022; 224:119121. [PMID: 36126626 DOI: 10.1016/j.watres.2022.119121] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Revised: 09/11/2022] [Accepted: 09/13/2022] [Indexed: 06/15/2023]
Abstract
Sedimentary denitrification and anaerobic ammonium oxidation (anammox) are two microbially-mediated nitrogen removal pathways with distinct climatic feedbacks. Estuaries receive large fluxes of anthropogenic nitrogen and serve as hotspots for nitrogen loss. Applying 15N isotope pairing technique and sediment intact core incubation in two subtropical estuaries, the Yangtze River Estuary (YRE) and Jiulong River Estuary (JRE), we show that denitrification predominates the sedimentary nitrogen loss with a minor contribution (8.6 ± 7.5%) from anammox. Particulate organic matter degradation sustains the sedimentary nitrogen removal linking the nitrogen transformations between water column and sediment. Our results indicate that estuarine sediments exhibit high areal nitrogen removal rate, but play a relatively weak role in eliminating the nitrogen inputted from river basin due to the limited area. The riverine excess nitrogen will eventually enter into the adjacent continental shelf and be removed via phytoplankton assimilation-sedimentation-degradation-coupled nitrification-denitrification. In addition, sedimentary denitrification causes 1.8 ± 2.2% of nitrogen flow towards nitrous oxide (N2O) production and the derived N2O release flux accounts for 59% and 65% of the daily sea-air N2O emission in the YRE and JRE, respectively. These findings contribute to a better understanding of estuarine sedimentary nitrogen removal and associated climate feedbacks, and to the parameterization of Earth system models.
Collapse
Affiliation(s)
- Ehui Tan
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, Hainan, China; State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China.
| | - Ting-Chang Hsu
- Biodiversity Research Center, Academia Sinica, Taipei, Taiwan
| | - Wenbin Zou
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
| | - Xiuli Yan
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, College of Science, Shantou University, Shantou, China
| | - Zhixiong Huang
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, Hainan, China
| | - Bin Chen
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
| | - Yongkai Chang
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, Hainan, China
| | - Zhenzhen Zheng
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, Hainan, China
| | - Liwei Zheng
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, Hainan, China
| | - Min Xu
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, Hainan, China
| | - Li Tian
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China
| | - Shuh-Ji Kao
- State Key Laboratory of Marine Resource Utilization in South China Sea, Hainan University, Haikou, Hainan, China; State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, China.
| |
Collapse
|
20
|
Song K, Xue Y, Li L, Deng M, Zhao X. Impact and microbial mechanism of continuous nanoplastics exposure on the urban wastewater treatment process. WATER RESEARCH 2022; 223:119017. [PMID: 36044798 DOI: 10.1016/j.watres.2022.119017] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Revised: 08/07/2022] [Accepted: 08/20/2022] [Indexed: 06/15/2023]
Abstract
Contamination by nanoplastics in urban water has aroused increasing concern. The impact of nanoplastic exposure on the wastewater treatment process in the long term is still unclear. This study investigated the effect of continuous nanoplastic exposure (R1:0, R2:10, R3:100, and R4:1000 μg/L) on the nitrification and denitrification processes for over 200 days in a sequencing batch reactor (SBR). The results revealed that nanoplastic exposure does not demonstrate significant inhibition of total nitrogen removal. The ammonia oxidation rate (19.24 ± 0.01 mgN/gMLVSS/h, p < 0.05) and denitrification rate (11.78 ± 0.11 mgN/ gMLVSS/h, p < 0.05) in R4 was significantly lower than the control (R1: 0 μg/L). The maximal reaction velocities of N2O reduction (Vmax) were improved after long-term exposure to nanoplastics in high concentrations. The R3 demonstrated the highest Vmax value-six times higher than R4 and approximately 20 times higher than R1 and R2. The microbial structure largely varied with the exposure to nanoplastics, where the exposure to a high concentration largely suppressed the nitrifier and selectively enriched the denitrifier. The percentage of the top 20 genera of denitrifiers increased from 31.76% to 63.42%, and the nitrifiers decreased from an initial 12.40% to 2.83% for R4. The predominant genera were found to be Thauera, Azoarcus, and Defluviicoccus in R4 and R3 which indicated their tolerance to nanoplastics. The function prediction results indicated that the membrane transport function was significantly enhanced and the lipid metabolism function was significantly reduced in R4 as compared with the control (R1, p<0.05). This may be attributed to the adsorption of nanoplastics on bacteria. Observation under a scan electronic microscope demonstrated that the nanoplastics were firmly attached to the microbe surface and aggregated in activated sludge at high nanoplastics dosed reactor. These results deepen the understanding of the effect of nanoplastics on the urban wastewater treatment process and provide valuable information for the management of nanoplastic contamination in urban wastewater.
Collapse
Affiliation(s)
- Kang Song
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, No.7 Donghu South Road, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing, China
| | - Yunpeng Xue
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, No.7 Donghu South Road, Wuhan 430072, China; University of Chinese Academy of Sciences, Beijing, China
| | - Lu Li
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, No.7 Donghu South Road, Wuhan 430072, China.
| | - Min Deng
- State Key Laboratory of Freshwater Ecology and Biotechnology, Institute of Hydrobiology, Chinese Academy of Sciences, No.7 Donghu South Road, Wuhan 430072, China
| | - Xiaoli Zhao
- State Key Laboratory of Environmental Criteria and Risk Assessment, Chinese Research Academy of Environmental Sciences, Beijing 100012, China.
| |
Collapse
|
21
|
Li HZ, Zhu D, Sun AQ, Qin YF, Lindhardt JH, Cui L. Effects of soil protists on the antibiotic resistome under long term fertilization. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 307:119516. [PMID: 35609845 DOI: 10.1016/j.envpol.2022.119516] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/12/2021] [Revised: 05/09/2022] [Accepted: 05/18/2022] [Indexed: 06/15/2023]
Abstract
Soil protists are key in regulating soil microbial communities. However, our understanding on the role of soil protists in shaping antibiotic resistome is limited. Here, we considered the diversity and composition of bacteria, fungi and protists in arable soils collected from a long-term field experiment with multiple fertilization treatments. We explored the effects of soil protists on antibiotic resistome using high-throughput qPCR. Our results showed that long term fertilization had stronger effect on the composition of protists than those of bacteria and fungi. The detected number and relative abundance of antibiotic resistance genes (ARGs) were elevated in soils amended with organic fertilizer. Co-occurrence network analysis revealed that changes in protists may contribute to the changes in ARGs composition, and the application of different fertilizers altered the communities of protistan consumers, suggesting that effects of protistan communities on ARGs might be altered by the top-down impact on bacterial composition. This study demonstrates soil protists as promising agents in monitoring and regulating ecological risk of antibiotic resistome associated with organic fertilizers.
Collapse
Affiliation(s)
- Hong-Zhe Li
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, Xiamen, 361021, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing, 100049, China
| | - Dong Zhu
- Key Laboratory of Urban Environment and Health, Ningbo Urban Environment Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen, 361021, China.
| | - An-Qi Sun
- Key Laboratory for Humid Subtropical Ecogeographical Processes of the Ministry of Education, School of Geographical Sciences, Fujian Normal University, Fuzhou, 350007, China
| | - Yi-Fei Qin
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, Xiamen, 361021, China; University of Chinese Academy of Sciences, 19A Yuquan Road, Beijing, 100049, China
| | - Jonathan Hessner Lindhardt
- Department of Plant and Environmental Sciences, Faculty of Science, University of Copenhagen, 1871, Frederiksberg, Denmark; Sino-Danish Center for Education and Research, Beijing, China
| | - Li Cui
- Key Laboratory of Urban Environment and Health, Institute of Urban Environment, Chinese Academy of Sciences, 1799 Jimei Road, Xiamen, 361021, China
| |
Collapse
|
22
|
Su X, Yang L, Yang K, Tang Y, Wen T, Wang Y, Rillig MC, Rohe L, Pan J, Li H, Zhu YG. Estuarine plastisphere as an overlooked source of N2O production. Nat Commun 2022; 13:3884. [PMID: 35794126 PMCID: PMC9259610 DOI: 10.1038/s41467-022-31584-x] [Citation(s) in RCA: 67] [Impact Index Per Article: 33.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Accepted: 06/22/2022] [Indexed: 12/13/2022] Open
Abstract
“Plastisphere”, microbial communities colonizing plastic debris, has sparked global concern for marine ecosystems. Microbiome inhabiting this novel human-made niche has been increasingly characterized; however, whether the plastisphere holds crucial roles in biogeochemical cycling remains largely unknown. Here we evaluate the potential of plastisphere in biotic and abiotic denitrification and nitrous oxide (N2O) production in estuaries. Biofilm formation provides anoxic conditions favoring denitrifiers. Comparing with surrounding bulk water, plastisphere exhibits a higher denitrifying activity and N2O production, suggesting an overlooked N2O source. Regardless of plastisphere and bulk water, bacterial and fungal denitrifications are the main regulators for N2O production instead of chemodenitrification. However, the contributions of bacteria and fungi in the plastisphere are different from those in bulk water, indicating a distinct N2O production pattern in the plastisphere. These findings pinpoint plastisphere as a N2O source, and provide insights into roles of the new biotope in biogeochemical cycling in the Anthropocene. The roles of marine plastisphere in global nitrogen cycling are largely unknown. Here, the authors indicate that the plastisphere could act as a potential source of N2O production, which is mainly regulated by the biotic denitrification
Collapse
|
23
|
Wu L, An Z, Zhou J, Chen F, Liu B, Qi L, Yin G, Dong H, Liu M, Hou L, Zheng Y. Effects of Aquatic Acidification on Microbially Mediated Nitrogen Removal in Estuarine and Coastal Environments. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:5939-5949. [PMID: 35465670 DOI: 10.1021/acs.est.2c00692] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Acidification of estuarine and coastal waters is anticipated to influence nitrogen (N) removal processes, which are critical pathways for eliminating excess N from these ecosystems. We found that denitrification rates decreased significantly under acidified conditions (P < 0.05), which reduced by 41-53% in estuarine and coastal sediments under an approximately 0.3 pH reduction of the overlying water. However, the N removal rates through the anaerobic ammonium oxidation (anammox) process were concomitantly promoted under the same acidification conditions (increased by 47-109%, P < 0.05), whereas the total rates of N loss were significantly inhibited by aquatic acidification (P < 0.05), as denitrification remained the dominant N removal pathway. More importantly, the emission of nitrous oxide (N2O) from estuarine and coastal sediments was greatly stimulated by aquatic acidification (P < 0.05). Molecular analyses further demonstrated that aquatic acidification also altered the functional microbial communities in estuarine and coastal sediments; and the abundance of denitrifiers was significantly reduced (P < 0.05), while the abundance of anammox bacteria remained relatively stable. Collectively, this study reveals the effects of acidification on N removal processes and the underlying mechanisms and suggests that the intensifying acidification in estuarine and coastal waters might reduce the N removal function of these ecosystems, exacerbate eutrophication, and accelerate global climate change.
Collapse
Affiliation(s)
- Li Wu
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Zhirui An
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Jie Zhou
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Feiyang Chen
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Bolin Liu
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Lin Qi
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Guoyu Yin
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Hongpo Dong
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Min Liu
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
| | - Lijun Hou
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| | - Yanling Zheng
- School of Geographic Sciences, East China Normal University, Shanghai 200241, China
- Key Laboratory of Geographic Information Science (Ministry of Education), East China Normal University, Shanghai 200241, China
- State Key Laboratory of Estuarine and Coastal Research, Yangtze Delta Estuarine Wetland Ecosystem Observation and Research Station, Ministry of Education & Shanghai, East China Normal University, Shanghai 200241, China
| |
Collapse
|
24
|
Liang Z, Yi J, Cao D, Shi J, Yang D, Dai L, Dai X. High concentration powder carrier bio-fluidized bed process: A new perspective for domestic wastewater treatment. BIORESOURCE TECHNOLOGY 2022; 351:127015. [PMID: 35306133 DOI: 10.1016/j.biortech.2022.127015] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/13/2022] [Revised: 03/10/2022] [Accepted: 03/12/2022] [Indexed: 06/14/2023]
Abstract
The nitrogen removal mechanism of the high concentration powder carrier bio-fluidized bed (HPB) process was investigated with actual domestic wastewater. The micron-size (10-70 μm) powder carriers were diatomite and Fe-C. Results showed diatomite enriched the relative abundances of ammonia-oxidizing bacteria and nitrite-oxidizing bacteria, accordingly increasing the rate of nitrification. Even a 100% increase of genes associated with the ammonia oxidation was achieved. Fe-C enhanced the rate of substrate utilization mainly by increasing the activity of the electron transfer system. Hydrocyclone separator, as a key device of HPB, was able to recover the carriers with high efficiency (recovery efficiency of 72.66 ─ 82.50% after 75 days), thus, indirectly improving the functionality of the carriers. Furthermore, it could renew the surface of microbial aggregations, consequently improving the adsorption capacity to substrates. HPB could provide the feasibility of shortening the hydraulic retention time and expanding the capacity of wastewater treatment plants.
Collapse
Affiliation(s)
- Zixuan Liang
- Tongji University, College of Environmental Science and Engineering, State Key Lab Pollution Control and Resource Reuse, Shanghai 200092, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, PR China
| | - Jing Yi
- Hunan Sanyou Environmental Protection Co. Ltd., Changsha, Hunan, PR China
| | - Dawen Cao
- Tongji University, College of Environmental Science and Engineering, State Key Lab Pollution Control and Resource Reuse, Shanghai 200092, PR China; Hunan Sanyou Environmental Protection Co. Ltd., Changsha, Hunan, PR China
| | - Juan Shi
- Shanghai University of Electric Power, Shanghai 200090, PR China
| | - Donghai Yang
- Tongji University, College of Environmental Science and Engineering, State Key Lab Pollution Control and Resource Reuse, Shanghai 200092, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, PR China
| | - Lingling Dai
- Tongji University, College of Environmental Science and Engineering, State Key Lab Pollution Control and Resource Reuse, Shanghai 200092, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, PR China
| | - Xiaohu Dai
- Tongji University, College of Environmental Science and Engineering, State Key Lab Pollution Control and Resource Reuse, Shanghai 200092, PR China; Shanghai Institute of Pollution Control and Ecological Security, Shanghai 200092, PR China.
| |
Collapse
|
25
|
Zhang Y, Zhang F, Abalos D, Luo Y, Hui D, Hungate BA, García-Palacios P, Kuzyakov Y, Olesen JE, Jørgensen U, Chen J. Stimulation of ammonia oxidizer and denitrifier abundances by nitrogen loading: Poor predictability for increased soil N 2 O emission. GLOBAL CHANGE BIOLOGY 2022. [PMID: 34923712 DOI: 10.6084/m9.figshare.14370896] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 05/02/2023]
Abstract
Unprecedented nitrogen (N) inputs into terrestrial ecosystems have profoundly altered soil N cycling. Ammonia oxidizers and denitrifiers are the main producers of nitrous oxide (N2 O), but it remains unclear how ammonia oxidizer and denitrifier abundances will respond to N loading and whether their responses can predict N-induced changes in soil N2 O emission. By synthesizing 101 field studies worldwide, we showed that N loading significantly increased ammonia oxidizer abundance by 107% and denitrifier abundance by 45%. The increases in both ammonia oxidizer and denitrifier abundances were primarily explained by N loading form, and more specifically, organic N loading had stronger effects on their abundances than mineral N loading. Nitrogen loading increased soil N2 O emission by 261%, whereas there was no clear relationship between changes in soil N2 O emission and shifts in ammonia oxidizer and denitrifier abundances. Our field-based results challenge the laboratory-based hypothesis that increased ammonia oxidizer and denitrifier abundances by N loading would directly cause higher soil N2 O emission. Instead, key abiotic factors (mean annual precipitation, soil pH, soil C:N ratio, and ecosystem type) explained N-induced changes in soil N2 O emission. Altogether, these findings highlight the need for considering the roles of key abiotic factors in regulating soil N transformations under N loading to better understand the microbially mediated soil N2 O emission.
Collapse
Affiliation(s)
- Yong Zhang
- School of Resources and Environmental Engineering, Anhui University, Hefei, China
| | - Feng Zhang
- School of Resources and Environmental Engineering, Anhui University, Hefei, China
| | - Diego Abalos
- Department of Agroecology, Aarhus University, Tjele, Denmark
| | - Yiqi Luo
- Center for Ecosystem Science and Society and Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA
| | - Dafeng Hui
- Department of Biological Sciences, Tennessee State University, Nashville, Tennessee, USA
| | - Bruce A Hungate
- Center for Ecosystem Science and Society and Department of Biological Sciences, Northern Arizona University, Flagstaff, Arizona, USA
| | - Pablo García-Palacios
- Departamento de Biología y Geología, Física y Química Inorgánica y Analítica, Escuela Superior de Ciencias Experimentales y Tecnología, Universidad Rey Juan Carlos, Móstoles, Spain
- Instituto de Ciencias Agrarias, Consejo Superior de Investigaciones Científicas, Madrid, Spain
| | - Yakov Kuzyakov
- Department of Soil Science of Temperate Ecosystems, University of Göttingen, Göttingen, Germany
- Agro-Technological Institute, RUDN University, Moscow, Russia
- Institute of Environmental Sciences, Kazan Federal University, Kazan, Russia
| | - Jørgen Eivind Olesen
- Department of Agroecology, Aarhus University, Tjele, Denmark
- iCLIMATE Interdisciplinary Centre for Climate Change, Aarhus University, Roskilde, Denmark
- Aarhus University Centre for Circular Bioeconomy, Aarhus University, Tjele, Denmark
| | - Uffe Jørgensen
- Department of Agroecology, Aarhus University, Tjele, Denmark
- Aarhus University Centre for Circular Bioeconomy, Aarhus University, Tjele, Denmark
| | - Ji Chen
- Department of Agroecology, Aarhus University, Tjele, Denmark
- iCLIMATE Interdisciplinary Centre for Climate Change, Aarhus University, Roskilde, Denmark
- Aarhus University Centre for Circular Bioeconomy, Aarhus University, Tjele, Denmark
| |
Collapse
|
26
|
Zhang Y, Zhang F, Abalos D, Luo Y, Hui D, Hungate BA, García‐Palacios P, Kuzyakov Y, Olesen JE, Jørgensen U, Chen J. Stimulation of ammonia oxidizer and denitrifier abundances by nitrogen loading: Poor predictability for increased soil N 2 O emission. GLOBAL CHANGE BIOLOGY 2022; 28:2158-2168. [PMID: 34923712 PMCID: PMC9303726 DOI: 10.1111/gcb.16042] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2021] [Accepted: 12/10/2021] [Indexed: 05/15/2023]
Abstract
Unprecedented nitrogen (N) inputs into terrestrial ecosystems have profoundly altered soil N cycling. Ammonia oxidizers and denitrifiers are the main producers of nitrous oxide (N2 O), but it remains unclear how ammonia oxidizer and denitrifier abundances will respond to N loading and whether their responses can predict N-induced changes in soil N2 O emission. By synthesizing 101 field studies worldwide, we showed that N loading significantly increased ammonia oxidizer abundance by 107% and denitrifier abundance by 45%. The increases in both ammonia oxidizer and denitrifier abundances were primarily explained by N loading form, and more specifically, organic N loading had stronger effects on their abundances than mineral N loading. Nitrogen loading increased soil N2 O emission by 261%, whereas there was no clear relationship between changes in soil N2 O emission and shifts in ammonia oxidizer and denitrifier abundances. Our field-based results challenge the laboratory-based hypothesis that increased ammonia oxidizer and denitrifier abundances by N loading would directly cause higher soil N2 O emission. Instead, key abiotic factors (mean annual precipitation, soil pH, soil C:N ratio, and ecosystem type) explained N-induced changes in soil N2 O emission. Altogether, these findings highlight the need for considering the roles of key abiotic factors in regulating soil N transformations under N loading to better understand the microbially mediated soil N2 O emission.
Collapse
Affiliation(s)
- Yong Zhang
- School of Resources and Environmental EngineeringAnhui UniversityHefeiChina
| | - Feng Zhang
- School of Resources and Environmental EngineeringAnhui UniversityHefeiChina
| | - Diego Abalos
- Department of AgroecologyAarhus UniversityTjeleDenmark
| | - Yiqi Luo
- Center for Ecosystem Science and Society and Department of Biological SciencesNorthern Arizona UniversityFlagstaffArizonaUSA
| | - Dafeng Hui
- Department of Biological SciencesTennessee State UniversityNashvilleTennesseeUSA
| | - Bruce A. Hungate
- Center for Ecosystem Science and Society and Department of Biological SciencesNorthern Arizona UniversityFlagstaffArizonaUSA
| | - Pablo García‐Palacios
- Departamento de Biología y GeologíaFísica y Química Inorgánica y AnalíticaEscuela Superior de Ciencias Experimentales y TecnologíaUniversidad Rey Juan CarlosMóstolesSpain
- Instituto de Ciencias AgrariasConsejo Superior de Investigaciones CientíficasMadridSpain
| | - Yakov Kuzyakov
- Department of Soil Science of Temperate EcosystemsUniversity of GöttingenGöttingenGermany
- Agro‐Technological InstituteRUDN UniversityMoscowRussia
- Institute of Environmental SciencesKazan Federal UniversityKazanRussia
| | - Jørgen Eivind Olesen
- Department of AgroecologyAarhus UniversityTjeleDenmark
- iCLIMATE Interdisciplinary Centre for Climate ChangeAarhus UniversityRoskildeDenmark
- Aarhus University Centre for Circular BioeconomyAarhus UniversityTjeleDenmark
| | - Uffe Jørgensen
- Department of AgroecologyAarhus UniversityTjeleDenmark
- Aarhus University Centre for Circular BioeconomyAarhus UniversityTjeleDenmark
| | - Ji Chen
- Department of AgroecologyAarhus UniversityTjeleDenmark
- iCLIMATE Interdisciplinary Centre for Climate ChangeAarhus UniversityRoskildeDenmark
- Aarhus University Centre for Circular BioeconomyAarhus UniversityTjeleDenmark
| |
Collapse
|