Global variations and controlling factors of anammox rates

Global Relative Importance of Denitrification and Anammox in Microbial Nitrogen Loss Across Terrestrial and Aquatic Ecosystems

Denitrification and anaerobic ammonium oxidation (anammox) are the major microbial processes responsible for global nitrogen (N) loss. Yet, the relative contributions of denitrification and anammox to N loss across contrasting terrestrial and aquatic ecosystems worldwide remain unclear, hampering capacities to predict the human alterations in the global N cycle. Here, a global synthesis including 3240 observations from 199 published isotope pairing studies is conducted and finds that denitrification governs microbial N loss globally (79.8±0.4%). Significantly, anammox is more important in aquatic than terrestrial ecosystems worldwide and can contribute up to 43.2% of N loss in global seawater. Global maps for N loss associated with denitrification and anammox are further generated and show that the contribution of anammox to N loss decreases with latitude for soils and sediments but generally increases with substrate depth. This work highlights the importance of anammox as well as denitrification in driving ecosystem N losses, which is critical for improving the current global N cycle model and achieving sustainable N management.

Soil nitrogen biogeochemistry and hydrological characteristics shape the nitrate levels in a river

The high levels of nitrate (NO3-) in the surface water have contributed to eutrophication and other eco-environmental damages worldwide. Although the excessive NO3- concentrations in rivers were often attributed to anthropogenic activities, some undisturbed or slightly disturbed rivers also had high NO3- levels. This study utilized multi-pronged approaches (i.e., river natural abundance isotopes, 15N-labeling techniques, and qPCR) to provide a comprehensive explanation of the reason for the high NO3- levels in a river draining forest-dominated terrene. The river natural abundance isotopes (δ15N/δ18O-NO3-) indicated that the soil source (i.e., soil organic nitrogen-SON and chemical fertilizer-CF) were the primary contributors to the NO3-, and the NO3- removal was probably prevalent in the basin scale. The 15N-labeling techniques quantitatively showed that denitrification and anammox were stronger than nitrification in the soils and sediments. Structural equation models suggested that nitrification in the soils was regulated by NH4+-N contents, which, in turn, were closely related to fertilization in spring. Denitrification and anammox were largely controlled by elevation and functional gene abundances (i.e., nirK and hzsB, respectively). The hydrological isotopes (i.e., δD/δ18O-H2O) indicated that the transport of NO3- from soil to the river was related to the intensity of runoff leaching to the soil, In contrast, the riverine NH4+ was largely from point sources; thus, increasing runoff led to a dilution effect. This study clearly showed that soil biogeochemistry and hydrological condition of a river basin jointly shaped the high NO3- levels in the almost undisturbed river.

Salt marsh nitrogen cycling: where land meets sea

Salt marshes sit at the terrestrial-aquatic interface of oceans around the world. Unique features of salt marshes that differentiate them from their upland or offshore counterparts include high rates of primary production from vascular plants and saturated saline soils that lead to sharp redox gradients and a diversity of electron acceptors and donors. Moreover, the dynamic nature of root oxygen loss and tidal forcing leads to unique biogeochemical conditions that promote nitrogen cycling. Here, we highlight recent advances in our understanding of key nitrogen cycling processes in salt marshes and discuss areas where additional research is needed to better predict how salt marsh N cycling will respond to future environmental change.

Unveiling unique microbial nitrogen cycling and nitrification driver in coastal Antarctica

Largely removed from anthropogenic delivery of nitrogen (N), Antarctica has notably low levels of nitrogen. Though our understanding of biological sources of ammonia have been elucidated, the microbial drivers of nitrate (NO3-) cycling in coastal Antarctica remains poorly understood. Here, we explore microbial N cycling in coastal Antarctica, unraveling the biological origin of NO3- via oxygen isotopes in soil and lake sediment, and through the reconstruction of 1968 metagenome-assembled genomes from 29 microbial phyla. Our analysis reveals the metabolic potential for microbial N2 fixation, nitrification, and denitrification, but not for anaerobic ammonium oxidation, signifying a unique microbial N-cycling dynamic. We identify the predominance of complete ammonia oxidizing (comammox) Nitrospira, capable of performing the entire nitrification process. Their adaptive strategies to the Antarctic environment likely include synthesis of trehalose for cold stress, high substrate affinity for resource utilization, and alternate metabolic pathways for nutrient-scarce conditions. We confirm the significant role of comammox Nitrospira in the autotrophic, nitrification process via 13C-DNA-based stable isotope probing. This research highlights the crucial contribution of nitrification to the N budget in coastal Antarctica, identifying comammox Nitrospira clade B as a nitrification driver.

Denitrification dominates dissimilatory nitrate reduction across global natural ecosystems

Denitrification, anaerobic ammonium oxidation (anammox), and dissimilatory nitrate reduction to ammonium (DNRA) are three competing processes of microbial nitrate reduction that determine the degree of ecosystem nitrogen (N) loss versus recycling. However, the global patterns and drivers of relative contributions of these N cycling processes to soil or sediment nitrate reduction remain unknown, limiting our understanding of the global N balance and management. Here, we compiled a global dataset of 1570 observations from a wide range of terrestrial and aquatic ecosystems. We found that denitrification contributed up to 66.1% of total nitrate reduction globally, being significantly greater in estuarine and coastal ecosystems. Anammox and DNRA could account for 12.7% and 21.2% of total nitrate reduction, respectively. The contribution of denitrification to nitrate reduction increased with longitude, while the contribution of anammox and DNRA decreased. The local environmental factors controlling the relative contributions of the three N cycling processes to nitrate reduction included the concentrations of soil organic carbon, ammonium, nitrate, and ferrous iron. Our results underline the dominant role of denitrification over anammox and DNRA in ecosystem nitrate transformation, which is crucial to improving the current global soil N cycle model and achieving sustainable N management.