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Issar S, Leroy C, d'Ettorre P, Kilner R. Seasonal Patterns of Resource Use Within Natural Populations of Burying Beetles. Ecol Evol 2024; 14:e70429. [PMID: 39463740 PMCID: PMC11502939 DOI: 10.1002/ece3.70429] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 09/19/2024] [Accepted: 09/25/2024] [Indexed: 10/29/2024] Open
Abstract
For organisms in temperate environments, seasonal variation in resource availability and weather conditions exert fluctuating selection pressures on survival and fitness, resulting in diverse adaptive responses. By manipulating resource availability on a local spatial scale, we studied seasonal patterns of resource use within natural populations of burying beetles Nicrophorus vespilloides in a Norfolk woodland. Burying beetles are necrophagous insects that breed on vertebrate carcasses. They are active in Europe between April and October, after which they burrow into the soil and overwinter. Using breeding and chemical analyses, we compared the fecundity and physiological state of beetles that differed in their seasonal resource use. We found seasonal variation in carrion use by wild burying beetles and correlated differences in their reproductive success and cuticular hydrocarbon profiles. Our results provide novel insight into the seasonal correlates of behaviour, physiology and life history in burying beetles.
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Affiliation(s)
- Swastika Issar
- Department of ZoologyUniversity of CambridgeCambridgeUK
- National Centre for Biological Sciences‐Tata Institute of Fundamental ResearchBangaloreIndia
| | - Chloé Leroy
- Laboratory of Experimental and Comparative Ethology (LEEC), UR4443University Sorbonne Paris NordVilletaneuseFrance
| | - Patrizia d'Ettorre
- Laboratory of Experimental and Comparative Ethology (LEEC), UR4443University Sorbonne Paris NordVilletaneuseFrance
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2
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Gimmi E, Wallisch J, Vorburger C. Ecological divergence despite common mating sites: Genotypes and symbiotypes shed light on cryptic diversity in the black bean aphid species complex. Heredity (Edinb) 2024; 132:320-330. [PMID: 38745070 PMCID: PMC11167045 DOI: 10.1038/s41437-024-00687-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2023] [Revised: 04/23/2024] [Accepted: 04/26/2024] [Indexed: 05/16/2024] Open
Abstract
Different host plants represent ecologically dissimilar environments for phytophagous insects. The resulting divergent selection can promote the evolution of specialized host races, provided that gene flow is reduced between populations feeding on different plants. In black bean aphids belonging to the Aphis fabae complex, several morphologically cryptic taxa have been described based on their distinct host plant preferences. However, host choice and mate choice are largely decoupled in these insects: they are host-alternating and migrate between specific summer host plants and shared winter hosts, with mating occurring on the shared hosts. This provides a yearly opportunity for gene flow among aphids using different summer hosts, and raises the question if and to what extent the ecologically defined taxa are reproductively isolated. Here, we analyzed a geographically and temporally structured dataset of microsatellite genotypes from A. fabae that were mostly collected from their main winter host Euonymus europaeus, and additionally from another winter host and fourteen summer hosts. The data reveals multiple, strongly differentiated genetic clusters, which differ in their association with different summer and winter hosts. The clusters also differ in the frequency of infection with two heritable, facultative endosymbionts, separately hinting at reproductive isolation and divergent ecological selection. Furthermore, we found evidence for occasional hybridization among genetic clusters, with putative hybrids collected more frequently in spring than in autumn. This suggests that similar to host races in other phytophagous insects, both prezygotic and postzygotic barriers including selection against hybrids maintain genetic differentiation among A. fabae taxa, despite a common mating habitat.
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Affiliation(s)
- Elena Gimmi
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland.
- D-USYS, Department of Environmental Systems Science, ETH Zürich, Switzerland.
| | - Jesper Wallisch
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland
| | - Christoph Vorburger
- Department of Aquatic Ecology, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland
- D-USYS, Department of Environmental Systems Science, ETH Zürich, Switzerland
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3
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Grieshop K, Ho EKH, Kasimatis KR. Dominance reversals: the resolution of genetic conflict and maintenance of genetic variation. Proc Biol Sci 2024; 291:20232816. [PMID: 38471544 DOI: 10.1098/rspb.2023.2816] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 02/05/2024] [Indexed: 03/14/2024] Open
Abstract
Beneficial reversals of dominance reduce the costs of genetic trade-offs and can enable selection to maintain genetic variation for fitness. Beneficial dominance reversals are characterized by the beneficial allele for a given context (e.g. habitat, developmental stage, trait or sex) being dominant in that context but recessive where deleterious. This context dependence at least partially mitigates the fitness consequence of heterozygotes carrying one non-beneficial allele for their context and can result in balancing selection that maintains alternative alleles. Dominance reversals are theoretically plausible and are supported by mounting empirical evidence. Here, we highlight the importance of beneficial dominance reversals as a mechanism for the mitigation of genetic conflict and review the theory and empirical evidence for them. We identify some areas in need of further research and development and outline three methods that could facilitate the identification of antagonistic genetic variation (dominance ordination, allele-specific expression and allele-specific ATAC-Seq (assay for transposase-accessible chromatin with sequencing)). There is ample scope for the development of new empirical methods as well as reanalysis of existing data through the lens of dominance reversals. A greater focus on this topic will expand our understanding of the mechanisms that resolve genetic conflict and whether they maintain genetic variation.
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Affiliation(s)
- Karl Grieshop
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich NR4 7TJ, UK
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada M5S 1A1
- Department of Molecular Biosciences, The Wenner-Gren Institute, Stockholm University, 10691 Stockholm, Sweden
| | - Eddie K H Ho
- Department of Biology, Reed College, 3203 SE Woodstock Blvd, Portland, OR 97202, USA
| | - Katja R Kasimatis
- Department of Ecology and Evolutionary Biology, University of Toronto, Toronto, Canada M5S 1A1
- Department of Biology, University of Virginia, Charlottesville, VA 22904, USA
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4
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Generalism in nature: a community ecology perspective. COMMUNITY ECOL 2023. [DOI: 10.1007/s42974-022-00130-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
AbstractLife on Earth is complex and generally abounds in food webs with other living organisms in terms of an ecological community. Besides such complexity, and the fact that populations of most living organisms have never been studied in terms of their molecular ecology, it is best to tread carefully when describing a given species as a ‘generalist’, more especially in terms of dietary and habitat breadth. We very much doubt that population homogeneity ever exists—because populations are always undergoing molecular-genetic changes, sometimes rapid, in response to various ecological challenges (e.g. climate, intra- and interspecific competition). In any case, a population may already have begun to undergo cryptic speciation. Such entities can occupy different habitats or exhibit different dietary breadths as a result of various ecological interactions formed over different spatial scales. These scales include everything from local (including islands) to geographic. The fossil evidence reveals that specialisations have existed over vast swathes of time. Besides, as is well documented, evolution only occurs as a result of adaptations leading to specialisation, and ultimately, specialist entitles, i.e. species and lower levels of ecological-evolutionary divergence. Here, focusing on diet, we posit that the terms mono-, oligo-and polyphagous are more accurate in relation to the dietary breadth of animals, with omnivory adopted in the case of organisms with very different food items. Thus, we strongly urge that the dubious and unscientific term ‘generalism’ be dropped in favour of these more precise and scientifically accurate terms directly relating to levels of phagy.
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5
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Nielsen DP, Harrison JG, Byer NW, Faske TM, Parchman TL, Simison WB, Matocq MD. The gut microbiome reflects ancestry despite dietary shifts across a hybrid zone. Ecol Lett 2023; 26:63-75. [PMID: 36331164 DOI: 10.1111/ele.14135] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Revised: 09/06/2022] [Accepted: 10/03/2022] [Indexed: 11/06/2022]
Abstract
The microbiome is critical to an organism's phenotype, and its composition is shaped by, and a driver of, eco-evolutionary interactions. We investigated how host ancestry, habitat and diet shape gut microbial composition in a mammalian hybrid zone between Neotoma lepida and N. bryanti that occurs across an ecotone between distinct vegetation communities. We found that habitat is the primary determinant of diet, while host genotype is the primary determinant of the gut microbiome-a finding further supported by intermediate microbiome composition in first-generation hybrids. Despite these distinct primary drivers, microbial richness was correlated with diet richness, and individuals that maintained higher dietary richness had greater gut microbial community stability. Both relationships were stronger in the relative dietary generalist of the two parental species. Our findings show that host ancestry interacts with dietary habits to shape the microbiome, ultimately resulting in the phenotypic plasticity that host-microbial interactions allow.
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Affiliation(s)
- Danny P Nielsen
- Department of Natural Resources and Environmental Science, University of Nevada, Reno, Nevada, USA.,Program in Ecology, Evolution and Conservation Biology, Reno, Nevada, USA
| | | | - Nathan W Byer
- Department of Natural Resources and Environmental Science, University of Nevada, Reno, Nevada, USA
| | - Trevor M Faske
- Program in Ecology, Evolution and Conservation Biology, Reno, Nevada, USA.,Department of Biology, University of Nevada, Reno, Nevada, USA
| | - Thomas L Parchman
- Program in Ecology, Evolution and Conservation Biology, Reno, Nevada, USA.,Department of Biology, University of Nevada, Reno, Nevada, USA
| | - W Brian Simison
- Center for Comparative Genomics, California Academy of Sciences, San Francisco, California, USA
| | - Marjorie D Matocq
- Department of Natural Resources and Environmental Science, University of Nevada, Reno, Nevada, USA.,Program in Ecology, Evolution and Conservation Biology, Reno, Nevada, USA
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6
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Kim H, Rodriguez-Saona C, Lee HS. Population Genetics of the Blueberry Gall Midge, Dasineura oxycoccana (Diptera: Cecidomyiidae), on Blueberry and Cranberry and Testing Invasion Scenarios. INSECTS 2022; 13:880. [PMID: 36292830 PMCID: PMC9604482 DOI: 10.3390/insects13100880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 09/16/2022] [Accepted: 09/25/2022] [Indexed: 06/16/2023]
Abstract
We compared the population genetic structure between populations of the blueberry gall midge-Dasineura oxycoccana (Johnson) (Diptera: Cecidomyiidae)-from blueberry and cranberry and determined the genetic relationships among geographical subgroups by genotyping 632 individuals from 31 different populations from their native USA regions (New Jersey, Michigan, and Georgia) and from invaded Korean regions using 12 microsatellite loci. Our population genetic analyses showed a clear separation between the two host-associated D. oxycoccana populations from blueberry and cranberry. Using data from only the blueberry-associated D. oxycoccana populations, we identified five genetically isolated subgroups. An analysis of the approximate Bayesian computation suggests that the invasive D. oxycoccana population from Korea appears to have been introduced from an unsampled source population rather than directly from its native range. Our findings will allow for an easier identification of the source of D. oxycoccana into newly invaded regions, as well as to determine their association with blueberry and cranberry, which based on our results can be considered as two distinct species.
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Affiliation(s)
- Hyojoong Kim
- Animal Systematics Laboratory, Department of Biological Science, Kunsan National University, Gunsan 54150, Korea
| | - Cesar Rodriguez-Saona
- Department of Entomology, P.E. Marucci Center, Rutgers University, Chatsworth, NJ 08019, USA
| | - Heung-Sik Lee
- Animal & Plant Quarantine Agency, Gimcheon 39660, Korea
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7
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Li Q, Chen C, Wu Y, Siddiqui JA, Lu C, Cheng Z, Li Y, Liu Q, Huang X. Specialization on Ficus Supported by Genetic Divergence and Morphometrics in Sympatric Host-Populations of the Camellia Aphid, Aphis aurantii. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.786450] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Adaptation to different host plants is considered to be an important driver of the divergence and speciation of herbivorous insects. The application of molecular data and integrated taxonomic practices in recent years may contribute to our understanding of population divergence and speciation, especially for herbivorous insects considered to be polyphagous. Aphis aurantii is an important agricultural and forestry pest with a broad range of host plants. In this study, samples of A. aurantii feeding on different host plants in the same geographical area were collected, and their population genetic divergence and morphological difference were analyzed. Phylogenetic analysis and haplotype network analysis based on five genes revealed that the population on Ficus exhibited significantly genetic divergence from populations on other host plants, which was also supported by the statistical analysis based on measurements of 38 morphological characters. Our results suggest that A. aurantii has undergone specialized evolution on Ficus, and the Ficus population may represent a lineage that is experiencing ongoing sympatric speciation.
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8
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Sochard C, Dupont C, Simon JC, Outreman Y. Secondary Symbionts Affect Foraging Capacities of Plant-Specialized Genotypes of the Pea Aphid. MICROBIAL ECOLOGY 2021; 82:1009-1019. [PMID: 33704553 DOI: 10.1007/s00248-021-01726-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Accepted: 02/24/2021] [Indexed: 06/12/2023]
Abstract
Ecological specialization is widespread in animals, especially in phytophagous insects, which have often a limited range of host plant species. This host plant specialization results from divergent selection on insect populations, which differ consequently in traits like behaviors involved in plant use. Although recent studies highlighted the influence of symbionts on dietary breadth of their insect hosts, whether these microbial partners influence the foraging capacities of plant-specialized insects has received little attention. In this study, we used the pea aphid Acyrthosiphon pisum, which presents distinct plant-specialized lineages and several secondary bacterial symbionts, to examine the possible effects of symbionts on the different foraging steps from plant searching to host plant selection. In particular, we tested the effect of secondary symbionts on the aphid capacity (1) to explore habitat at long distance (estimated through the production of winged offspring), (2) to explore habitat at short distance, and (3) to select its host plant. We found that secondary symbionts had a variable influence on the production of winged offspring in some genotypes, with potential consequences on dispersal and survival. By contrast, symbionts influenced both short-distance exploration and host plant selection only marginally. The implication of symbionts' influence on insect foraging capacities is discussed.
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Affiliation(s)
- Corentin Sochard
- IGEPP, INRAE, Institut Agro, Univ Rennes, 35000, Rennes, France
- IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, France
| | - Corentin Dupont
- IGEPP, INRAE, Institut Agro, Univ Rennes, 35000, Rennes, France
- IGEPP, INRAE, Institut Agro, Univ Rennes, 35653, Le Rheu, France
| | | | - Yannick Outreman
- IGEPP, INRAE, Institut Agro, Univ Rennes, 35000, Rennes, France.
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9
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Lee Y, Kanturski M, Foottit RG, Kim S, Lee S. Molecular phylogeny and evolution of Calaphidinae (Hemiptera: Aphididae). Cladistics 2021; 38:159-186. [DOI: 10.1111/cla.12487] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/15/2021] [Indexed: 11/29/2022] Open
Affiliation(s)
- Yerim Lee
- Insect Biosystematics Laboratory Department of Agricultural Biotechnology Seoul National University Seoul 08826 Korea
| | - Mariusz Kanturski
- Zoology, Research Team Faculty of Natural Sciences Institute of Biology, Biotechnology and Environmental Protection University of Silesia in Katowice Bankowa 9 Katowice 40‐007 Poland
| | - Robert G. Foottit
- Canadian National Collection of Insects Agriculture and Agri‐Food Canada Ottawa Research and Development Centre Ottawa Ontario K1A 0C6 Canada
| | - Sora Kim
- Insect Biosystematics Laboratory Department of Agricultural Biotechnology Seoul National University Seoul 08826 Korea
- Research Institute for Agricultural and Life Sciences Seoul National University Seoul 151‐921 Korea
| | - Seunghwan Lee
- Insect Biosystematics Laboratory Department of Agricultural Biotechnology Seoul National University Seoul 08826 Korea
- Research Institute for Agricultural and Life Sciences Seoul National University Seoul 151‐921 Korea
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10
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Villacis-Perez E, Snoeck S, Kurlovs AH, Clark RM, Breeuwer JAJ, Van Leeuwen T. Adaptive divergence and post-zygotic barriers to gene flow between sympatric populations of a herbivorous mite. Commun Biol 2021; 4:853. [PMID: 34244609 PMCID: PMC8270941 DOI: 10.1038/s42003-021-02380-y] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2020] [Accepted: 06/21/2021] [Indexed: 02/06/2023] Open
Abstract
Plant-herbivore interactions promote the generation and maintenance of both plant and herbivore biodiversity. The antagonistic interactions between plants and herbivores lead to host race formation: the evolution of herbivore types specializing on different plant species, with restricted gene flow between them. Understanding how ecological specialization promotes host race formation usually depends on artificial approaches, using laboratory experiments on populations associated with agricultural crops. However, evidence on how host races are formed and maintained in a natural setting remains scarce. Here, we take a multidisciplinary approach to understand whether populations of the generalist spider mite Tetranychus urticae form host races in nature. We demonstrate that a host race co-occurs among generalist conspecifics in the dune ecosystem of The Netherlands. Extensive field sampling and genotyping of individuals over three consecutive years showed a clear pattern of host associations. Genome-wide differences between the host race and generalist conspecifics were found using a dense set of SNPs on field-derived iso-female lines and previously sequenced genomes of T. urticae. Hybridization between lines of the host race and sympatric generalist lines is restricted by post-zygotic breakdown, and selection negatively impacts the survival of generalists on the native host of the host race. Our description of a host race among conspecifics with a larger diet breadth shows how ecological and reproductive isolation aid in maintaining intra-specific variation in sympatry, despite the opportunity for homogenization through gene flow. Our findings highlight the importance of explicitly considering the spatial and temporal scale on which plant-herbivore interactions occur in order to identify herbivore populations associated with different plant species in nature. This system can be used to study the underlying genetic architecture and mechanisms that facilitate the use of a large range of host plant taxa by extreme generalist herbivores. In addition, it offers the chance to investigate the prevalence and mechanisms of ecological specialization in nature.
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Affiliation(s)
- Ernesto Villacis-Perez
- Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, Netherlands.
- Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Gent, Belgium.
| | - Simon Snoeck
- Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Gent, Belgium
- Department of Biology, University of Washington, Seattle, USA
| | - Andre H Kurlovs
- Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Gent, Belgium
| | - Richard M Clark
- School of Biological Sciences and Henry Eyring Center for Cell and Genome Science, University of Utah, Salt Lake City, UT, USA
| | - Johannes A J Breeuwer
- Institute for Biodiversity and Ecosystem Dynamics (IBED), University of Amsterdam, Amsterdam, Netherlands.
| | - Thomas Van Leeuwen
- Department of Plants and Crops, Faculty of Bioscience Engineering, Ghent University, Gent, Belgium.
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11
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Stacy EA, Sakishima T, Tharp H, Snow N. Isolation of Metrosideros ('Ohi'a) Taxa on O'ahu Increases with Elevation and Extreme Environments. J Hered 2021; 111:103-118. [PMID: 31844884 DOI: 10.1093/jhered/esz069] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2019] [Accepted: 11/08/2019] [Indexed: 01/04/2023] Open
Abstract
Species radiations should be facilitated by short generation times and limited dispersal among discontinuous populations. Hawaii's hyper-diverse, landscape-dominant tree, Metrosideros, is unique among the islands' radiations for its massive populations that occur continuously over space and time within islands, its exceptional capacity for gene flow by both pollen and seed, and its extended life span (ca. >650 years). Metrosideros shows the greatest phenotypic and microsatellite DNA diversity on O'ahu, where taxa occur in tight sympatry or parapatry in mesic and montane wet forest on 2 volcanoes. We document the nonrandom distributions of 12 taxa (including unnamed morphotypes) along elevation gradients, measure phenotypes of ~6-year-old common-garden plants of 8 taxa to verify heritability of phenotypes, and examine genotypes of 476 wild adults at 9 microsatellite loci to compare the strengths of isolation across taxa, volcanoes, and distance. All 8 taxa retained their diagnostic phenotypes in the common garden. Populations were isolated by taxon to a range of degrees (pairwise FST between taxa: 0.004-0.267), and there was no pattern of isolation by distance or by elevation; however, significant isolation between volcanoes was observed within monotypic species, suggesting limited gene flow between volcanoes. Among the infraspecific taxa of Metrosideros polymorpha, genetic diversity and isolation significantly decreased and increased, respectively, with elevation. Overall, 5 of the 6 most isolated taxa were associated with highest elevations or otherwise extreme environments. These findings suggest a principal role for selection in the origin and maintenance of the exceptional diversity that occurs within continuous Metrosideros stands on O'ahu.
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Affiliation(s)
- Elizabeth A Stacy
- Department of Biology, University of Hawai'i Hilo, Hilo, HI.,Tropical Conservation Biology and Environmental Science Graduate Program, University of Hawai'i Hilo, Hilo, HI
| | - Tomoko Sakishima
- Department of Biology, University of Hawai'i Hilo, Hilo, HI.,Tropical Conservation Biology and Environmental Science Graduate Program, University of Hawai'i Hilo, Hilo, HI
| | - Heaven Tharp
- Department of Biology, University of Hawai'i Hilo, Hilo, HI
| | - Neil Snow
- Department of Biology, Pittsburg State University, Pittsburg, KS
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12
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Nielsen DP, Matocq MD. Differences in dietary composition and preference maintained despite gene flow across a woodrat hybrid zone. Ecol Evol 2021; 11:4909-4919. [PMID: 33976858 PMCID: PMC8093690 DOI: 10.1002/ece3.7399] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2020] [Revised: 02/16/2021] [Accepted: 02/28/2021] [Indexed: 12/16/2022] Open
Abstract
Ecotones, characterized by adjacent yet distinct biotic communities, provide natural laboratories in which to investigate how environmental selection influences the ecology and evolution of organisms. For wild herbivores, differential plant availability across sharp ecotones may be an important source of dietary-based selection.We studied small herbivore diet composition across a sharp ecotone where two species of woodrat, Neotoma bryanti and N. lepida, come into secondary contact with one another and hybridize. We quantified woodrat dietary preference through trnL metabarcoding of field-collected fecal pellets and experimental choice trials. Despite gene flow, parental N. bryanti and N. lepida maintain distinct diets across this fine spatial scale, and across temporal scales that span both wet and dry conditions. Neotoma bryanti maintained a more diverse diet, with Frangula californica (California coffeeberry) making up a large portion of its diet. Neotoma lepida maintains a less diverse diet, with Prunus fasciculata (desert almond) comprising more than half of its diet. Both F. californica and P. fasciculata are known to produce potentially toxic plant secondary compounds (PSCs), which should deter herbivory, yet these plants have relatively high nutritional value as measured by crude protein content. Neotoma bryanti and N. lepida consumed F. californica and P. fasciculata, respectively, in greater abundance than these plants are available on the landscape-indicating dietary selection. Finally, experimental preference trials revealed that N. bryanti exhibited a preference for F. californica, while N. lepida exhibited a relatively stronger preference for P. fasciculata. We find that N. bryanti exhibit a generalist herbivore strategy relative to N. lepida, which exhibit a more specialized feeding strategy in this study system.Our results suggest that woodrats respond to fine-scale environmental differences in plant availability that may require different metabolic strategies in order to balance nutrient acquisition while minimizing exposure to potentially toxic PSCs.
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Affiliation(s)
- Danny P. Nielsen
- Department of Natural Resources and Environmental ScienceUniversity of NevadaRenoNVUSA
- Graduate Program in EECBUniversity of NevadaRenoNVUSA
| | - Marjorie D. Matocq
- Department of Natural Resources and Environmental ScienceUniversity of NevadaRenoNVUSA
- Graduate Program in EECBUniversity of NevadaRenoNVUSA
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13
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Gu H, Wang Y, Wang H, He Y, Deng S, He X, Wu Y, Xing K, Gao X, He X, Wang Z. Contrasting ecological niches lead to great postzygotic ecological isolation: a case of hybridization between carnivorous and herbivorous cyprinid fishes. Front Zool 2021; 18:18. [PMID: 33882942 PMCID: PMC8059018 DOI: 10.1186/s12983-021-00401-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2021] [Accepted: 03/21/2021] [Indexed: 11/18/2022] Open
Abstract
Background Postzygote isolation is an important part of species isolation, especially for fish, and it can be divided into two aspects: genetic isolation and ecological isolation. With the increase in parental genetic distance, the intensity of genetic isolation between them also increases. Will the increase in parental ecological niche differences also lead to the increase in ecological isolation intensity between them? This question is difficult to answer based on the current literature due to the lack of hybridization cases of contrasting ecological niche parents. Results Cyprinid fish parents (Schizothorax wangchiachii and Percocypris pingi) with contrasting ecological niches (herbivorous and carnivorous) and their F1 hybrids were used as research objects. Fish and periphytic algae were selected as food corresponding to different parental resources. The foraging-related traits of these hybrids are generally the same between parents; however, the intermediate foraging traits of hybrids did not result in intermediate foraging performance for parental resources, and these hybrids could hardly forage for parental resources. The poor foraging performance of these hybrids for parental resources was caused not only by the decline in the foraging ability of these hybrids but, more importantly, by the decrease in foraging activity. Interestingly, these hybrids initially showed a high interest in foraging small fishes; however, after the first successful capture, these hybrids had difficulty ingesting fish and spit them out, which led to the subsequent decrease in foraging activity. We designed a series of experiments to explore the mechanism of the fish spitting of these hybrids, excluding the taste and the size of prey, and found that the decrease in their pharyngeal tooth puncture ability may be the reason. Conclusions This study was the first to demonstrate that these parents with contrasting ecological niches will produce great postzygotic ecological isolation for parental resources. The poor foraging performance of these hybrids for parental resources is mainly due to the decrease in foraging activity. Interestingly, these hybrids have obvious fish-spitting behaviour, which is a typical example of the incompatibility between intermediate traits and genetic behaviors. Supplementary Information The online version contains supplementary material available at 10.1186/s12983-021-00401-4.
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Affiliation(s)
- Haoran Gu
- Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, School of Life Sciences, Southwest University, Chongqing, 400715, China
| | - Yuanfu Wang
- Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, School of Life Sciences, Southwest University, Chongqing, 400715, China
| | - Haoyu Wang
- Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, School of Life Sciences, Southwest University, Chongqing, 400715, China
| | - You He
- Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai, 201204, China
| | - Sihong Deng
- Liangshan Kehua Water Ecology Company Limited, Xichang, 615000, China
| | - Xingheng He
- Sichuan Lubei Biotechnology Company Limited, Chengdu, 610011, China
| | - Yi Wu
- Sichuan Lubei Biotechnology Company Limited, Chengdu, 610011, China
| | - Kaiyan Xing
- Xichang Agriculture and Rural Affairs Bureau, Xichang, 615000, China
| | - Xue Gao
- Xichang Agriculture and Rural Affairs Bureau, Xichang, 615000, China
| | - Xuefu He
- Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, School of Life Sciences, Southwest University, Chongqing, 400715, China
| | - Zhijian Wang
- Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, School of Life Sciences, Southwest University, Chongqing, 400715, China.
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14
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Hernández-Hernández T, Miller EC, Román-Palacios C, Wiens JJ. Speciation across the Tree of Life. Biol Rev Camb Philos Soc 2021; 96:1205-1242. [PMID: 33768723 DOI: 10.1111/brv.12698] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2019] [Revised: 02/13/2021] [Accepted: 02/16/2021] [Indexed: 01/04/2023]
Abstract
Much of what we know about speciation comes from detailed studies of well-known model systems. Although there have been several important syntheses on speciation, few (if any) have explicitly compared speciation among major groups across the Tree of Life. Here, we synthesize and compare what is known about key aspects of speciation across taxa, including bacteria, protists, fungi, plants, and major animal groups. We focus on three main questions. Is allopatric speciation predominant across groups? How common is ecological divergence of sister species (a requirement for ecological speciation), and on what niche axes do species diverge in each group? What are the reproductive isolating barriers in each group? Our review suggests the following patterns. (i) Based on our survey and projected species numbers, the most frequent speciation process across the Tree of Life may be co-speciation between endosymbiotic bacteria and their insect hosts. (ii) Allopatric speciation appears to be present in all major groups, and may be the most common mode in both animals and plants, based on non-overlapping ranges of sister species. (iii) Full sympatry of sister species is also widespread, and may be more common in fungi than allopatry. (iv) Full sympatry of sister species is more common in some marine animals than in terrestrial and freshwater ones. (v) Ecological divergence of sister species is widespread in all groups, including ~70% of surveyed species pairs of plants and insects. (vi) Major axes of ecological divergence involve species interactions (e.g. host-switching) and habitat divergence. (vii) Prezygotic isolation appears to be generally more widespread and important than postzygotic isolation. (viii) Rates of diversification (and presumably speciation) are strikingly different across groups, with the fastest rates in plants, and successively slower rates in animals, fungi, and protists, with the slowest rates in prokaryotes. Overall, our study represents an initial step towards understanding general patterns in speciation across all organisms.
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Affiliation(s)
- Tania Hernández-Hernández
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A.,Catedrática CONACYT asignada a LANGEBIO-UGA Cinvestav, Libramiento Norte Carretera León Km 9.6, 36821, Irapuato, Guanajuato, Mexico
| | - Elizabeth C Miller
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A
| | - Cristian Román-Palacios
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A
| | - John J Wiens
- Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721-0088, U.S.A
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15
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Scale-dependent contribution of host-specificity and environmental factors to wood-boring longhorn beetle community assemblage in SW China. Sci Rep 2021; 11:5100. [PMID: 33658618 PMCID: PMC7930174 DOI: 10.1038/s41598-021-84511-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2020] [Accepted: 02/08/2021] [Indexed: 11/24/2022] Open
Abstract
Longhorn beetles are extremely rich wood-boring insects possessing larvae that feed on the xylem of trees and/or lianas, which have detrimental effects on plants; in turn, the hosting plants may play a fundamental role in shaping the longhorn beetle community assemblage. However, factors determining the community assemblage of wood-boring longhorn beetles, particularly along the multiple spatial scales is still in need of further exploration. In this study, we designed an experiment across several spatial scales (from local to macro scales) from tropical to temperate climate gradients in Yunnan province, southwest China to examine to what extend the attributes of host-specificity is shaping the community assemblage along different spatial scales. This study concludes that (1) the wood-boring longhorn beetles showed attributes of host-specificity to a certain degree at the community level, (2) biotic (host plant specificity) and abiotic (climatic gradients) factors jointly shaped community composition of this species along the multiple spatial scales, (3) biotic interactions have a prominent effect on the community composition of this species at local-scale while macroclimatic gradients impose the major control on it at macro-scale. Thus, this study highlights the significance of host specificity in affecting the wood-boring longhorn beetle community assemblage, particularly at local scales.
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16
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Lee Y, Thieme T, Kim H. Complex evolution in Aphis gossypii group (Hemiptera: Aphididae), evidence of primary host shift and hybridization between sympatric species. PLoS One 2021; 16:e0245604. [PMID: 33539375 PMCID: PMC7861460 DOI: 10.1371/journal.pone.0245604] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 01/05/2021] [Indexed: 11/17/2022] Open
Abstract
Aphids provide a good model system to understand the ecological speciation concept, since the majority of the species are host-specific, and they spend their entire lifecycle on certain groups of host plants. Aphid species that apparently have wide host plant ranges have often turned out to be complexes of host-specialized biotypes. Here we investigated the various host-associated populations of the two recently diverged species, Aphis gossypii and A. rhamnicola, having multiple primary hosts, to understand the complex evolution with host-associated speciation. Using mitochondrial DNA marker and nine microsatellite loci, we reconstructed the haplotype network, and analyzed the genetic structure and relationships. Approximate Bayesian computation was also used to infer the ancestral primary host and host-associated divergence, which resulted in Rhamnus being the most ancestral host for A. gossypii and A. rhamnicola. As a result, Aphis gossypii and A. rhamnicola do not randomly use their primary and secondary host plants; rather, certain biotypes use only some secondary and specific primary hosts. Some biotypes are possibly in a diverging state through specialization to specific primary hosts. Our results also indicate that a new heteroecious race can commonly be derived from the heteroecious ancestor, showing strong evidence of ecological specialization through a primary host shift in both A. gossypii and A. rhamnicola. Interestingly, A. gossypii and A. rhamnicola shared COI haplotypes with each other, thus there is a possibility of introgression by hybridization between them by cross-sharing same primary hosts. Our results contribute to a new perspective in the study of aphid evolution by identifying complex evolutionary trends in the gossypii sensu lato complex.
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Affiliation(s)
- Yerim Lee
- Animal Systematics Laboratory, Department of Biology, Kunsan National University, Gunsan, Republic of Korea
| | - Thomas Thieme
- BTL Bio-Test Labor GmbH Sagerheide, RG Phyto-Entomology, Gross Lüsewitz, Germany
| | - Hyojoong Kim
- Animal Systematics Laboratory, Department of Biology, Kunsan National University, Gunsan, Republic of Korea
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17
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Zhang L, Hood GR, Roush AM, Shzu SA, Comerford MS, Ott JR, Egan SP. Asymmetric, but opposing reductions in immigrant viability and fecundity promote reproductive isolation among host-associated populations of an insect herbivore. Evolution 2020; 75:476-489. [PMID: 33330984 DOI: 10.1111/evo.14148] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 11/27/2020] [Accepted: 12/11/2020] [Indexed: 01/04/2023]
Abstract
Immigrant inviability can contribute to reproductive isolation (RI) during ecological speciation by reducing the survival of immigrants in non-native environments. However, studies that assess the fitness consequence of immigrants moving from native to non-native environments typically fail to explore the potential role of concomitant reductions in immigrant fecundity despite recent evidence suggesting its prominent role during local adaptation. Here, we evaluate the directionality and magnitude of both immigrant viability and fecundity to RI in a host-specific gall-forming wasp, Belonocnema treatae. Using reciprocal transplant experiments replicated across sites, we measure immigrant viability and fecundity by comparing differences in the incidence of gall formation (viability) and predicted the number of eggs per female (fecundity) between residents and immigrants in each of two host-plant environments. Reduced immigrant viability was found in one host environment while reduced immigrant fecundity was found in the other. Such habitat-dependent barriers resulted in asymmetric RI between populations. By surveying recent literature on local adaptation, we find that asymmetry in immigrant viability and fecundity are widespread across disparate taxa, which highlights the need to combine estimates of both common and overlooked barriers in cases of potential bi-directional gene flow to create a more comprehensive view of the evolution of RI.
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Affiliation(s)
- Linyi Zhang
- Department of BioSciences, Rice University, Houston, Texas, 77005
| | - Glen R Hood
- Department of BioSciences, Rice University, Houston, Texas, 77005.,Department of Biological Sciences, Wayne State University, Detroit, Michigan, 48202
| | - Amy M Roush
- Department of BioSciences, Rice University, Houston, Texas, 77005
| | - Shih An Shzu
- Department of BioSciences, Rice University, Houston, Texas, 77005
| | | | - James R Ott
- Population and Conservation Biology Program, Department of Biology, Texas State University, San Marcos, Texas, 78666
| | - Scott P Egan
- Department of BioSciences, Rice University, Houston, Texas, 77005
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18
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DeVries ZC, Santangelo RG, Booth W, Lawrence CG, Balvín O, Bartonička T, Schal C. Reproductive compatibility among populations and host-associated lineages of the common bed bug ( Cimex lectularius L.). Ecol Evol 2020; 10:11090-11099. [PMID: 33144950 PMCID: PMC7593134 DOI: 10.1002/ece3.6738] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 06/15/2020] [Accepted: 08/05/2020] [Indexed: 11/07/2022] Open
Abstract
As populations differentiate across geographic or host-association barriers, interpopulation fertility is often a measure of the extent of incipient speciation. The bed bug, Cimex lectularius L., was recently found to form two host-associated lineages within Europe: one found with humans (human-associated, HA) and the other found with bats (bat-associated, BA). No unequivocal evidence of contemporary gene flow between these lineages has been found; however, it is unclear whether this is due to an inability to produce viable "hybrid" offspring. To address this question and determine the extent of compatibility between host-associated lineages, we set up mating crosses among populations of bed bugs based on both their host association (human-HA vs. bat-BA) and geographic origin (North America vs. Europe). Within-population fecundity was significantly higher for all HA populations (>1.7 eggs/day) than for BA populations (<1 egg/day). However, all within-population crosses, regardless of host association, had >92% egg hatch rates. Contrary to previous reports, in all interlineage crosses, successful matings occurred, fertile eggs were oviposited, and the F1 "hybrid" generation was found to be reproductively viable. In addition, we evaluated interpopulation genetic variation in Wolbachia among host-associated lineages. We did not find any clear patterns related to host association, nor did we observe a homogenization of Wolbachia lineages across populations that might explain a breakdown of reproductive incompatibility. These results indicate that while the HA and BA populations of C. lectularius represent genetically differentiated host-associated lineages, possibly undergoing sympatric speciation, this is in its incipient stage as they remain reproductively compatible. Other behavioral, physiological, and/or ecological factors likely maintain host-associated differentiation.
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Affiliation(s)
- Zachary C. DeVries
- Department of EntomologyUniversity of KentuckyLexingtonKYUSA
- Department of Entomology and Plant PathologyNorth Carolina State UniversityRaleighNCUSA
| | - Richard G. Santangelo
- Department of Entomology and Plant PathologyNorth Carolina State UniversityRaleighNCUSA
| | - Warren Booth
- Department of Biological ScienceThe University of TulsaTulsaOKUSA
| | - Christopher G. Lawrence
- Department of Biological ScienceThe University of TulsaTulsaOKUSA
- Ecology and Evolutionary BiologyPrinceton UniversityPrincetonNJUSA
| | - Ondřej Balvín
- Department of EcologyFaculty of Environmental SciencesCzech University of Life Sciences PraguePragueCzech Republic
| | - Tomáš Bartonička
- Department of Botany and ZoologyMasaryk UniversityBrnoCzech Republic
| | - Coby Schal
- Department of Entomology and Plant PathologyNorth Carolina State UniversityRaleighNCUSA
- W.M. Keck Center for Behavioral BiologyNorth Carolina State UniversityRaleighNCUSA
- Center for Human Health and the EnvironmentNorth Carolina State UniversityRaleighNCUSA
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19
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Sentis A, Bertram R, Dardenne N, Simon JC, Magro A, Pujol B, Danchin E, Hemptinne JL. Intraspecific difference among herbivore lineages and their host-plant specialization drive the strength of trophic cascades. Ecol Lett 2020; 23:1242-1251. [PMID: 32394585 DOI: 10.1111/ele.13528] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 04/08/2020] [Accepted: 04/10/2020] [Indexed: 11/29/2022]
Abstract
Trophic cascades - the indirect effect of predators on non-adjacent lower trophic levels - are important drivers of the structure and dynamics of ecological communities. However, the influence of intraspecific trait variation on the strength of trophic cascade remains largely unexplored, which limits our understanding of the mechanisms underlying ecological networks. Here we experimentally investigated how intraspecific difference among herbivore lineages specialized on different host plants influences trophic cascade strength in a terrestrial tri-trophic system. We found that the occurrence and strength of the trophic cascade are strongly influenced by herbivores' lineage and host-plant specialization but are not associated with density-dependent effects mediated by the growth rate of herbivore populations. Our findings stress the importance of intraspecific heterogeneities and evolutionary specialization as drivers of trophic cascade strength and underline that intraspecific variation should not be overlooked to decipher the joint influence of evolutionary and ecological factors on the functioning of multi-trophic interactions.
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Affiliation(s)
- Arnaud Sentis
- UMR-5174, EDB, CNRS, Université Toulouse III-Paul Sabatier, IRD, Toulouse, France.,UMR RECOVER, INRAE, Aix Marseille Univ, Aix-en-Provence, France
| | - Raphaël Bertram
- UMR-5174, EDB, CNRS, Université Toulouse III-Paul Sabatier, IRD, Toulouse, France
| | - Nathalie Dardenne
- UMR-5174, EDB, CNRS, Université Toulouse III-Paul Sabatier, IRD, Toulouse, France
| | | | - Alexandra Magro
- UMR-5174, EDB, CNRS, Université Toulouse III-Paul Sabatier, IRD, Toulouse, France
| | - Benoit Pujol
- PSL Université Paris: EPHE-UPVD-CNRS, USR, 3278 CRIOBE, Uni. Perpignan, France
| | - Etienne Danchin
- UMR-5174, EDB, CNRS, Université Toulouse III-Paul Sabatier, IRD, Toulouse, France
| | - Jean-Louis Hemptinne
- UMR-5174, EDB, CNRS, Université Toulouse III-Paul Sabatier, IRD, Toulouse, France
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20
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Van Buskirk J, Jansen van Rensburg A. Relative importance of isolation‐by‐environment and other determinants of gene flow in an alpine amphibian. Evolution 2020; 74:962-978. [DOI: 10.1111/evo.13955] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2019] [Revised: 02/26/2020] [Accepted: 03/09/2020] [Indexed: 02/07/2023]
Affiliation(s)
- Josh Van Buskirk
- Department of Evolutionary Biology and Environmental StudiesUniversity of Zurich Zurich 8057 Switzerland
| | - Alexandra Jansen van Rensburg
- Department of Evolutionary Biology and Environmental StudiesUniversity of Zurich Zurich 8057 Switzerland
- School of Biological SciencesUniversity of Bristol Bristol BS8 1TQ United Kingdom
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21
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Li Q, Deng J, Chen C, Zeng L, Lin X, Cheng Z, Qiao G, Huang X. DNA Barcoding Subtropical Aphids and Implications for Population Differentiation. INSECTS 2019; 11:E11. [PMID: 31877643 PMCID: PMC7022676 DOI: 10.3390/insects11010011] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/26/2019] [Revised: 12/14/2019] [Accepted: 12/18/2019] [Indexed: 11/16/2022]
Abstract
DNA barcoding has proven its worth in species identification, discovering cryptic diversity, and inferring genetic divergence. However, reliable DNA barcode reference libraries that these applications depend on are not available for many taxonomic groups and geographical regions. Aphids are a group of plant sap sucking insects, including many notorious pests in agriculture and forestry. The aphid fauna of the subtropical region has been understudied. In this study, based on extensive sampling effort across main subtropical areas, we sequenced 1581 aphid specimens of 143 morphospecies, representing 75 genera, and 13 subfamilies, to build the first comprehensive DNA barcode library for subtropical aphids. We examined the utility of DNA barcodes in identifying aphid species and population differentiation and evaluated the ability of different species delimitation methods (automatic barcode gap discovery (ABGD), generalized mixed Yule-coalescent (GMYC), and Bayesian Poisson tree processes (bPTP)). We found that most aphid species demonstrated barcode gaps and that a threshold value of 2% genetic distance is suitable for distinguishing most species. Our results indicated that ten morphospecies may have species divergence related to factors such as host plant or geography. By using two pest species Aphis spiraecola and A. gossypii as examples, we also discussed the effect of the sampling scale of host plants on the results and reliability of DNA barcoding of phytophagous insects. This DNA barcode library will be valuable for future studies and applications.
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Affiliation(s)
- Qiang Li
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.L.); (J.D.); (C.C.); (L.Z.); (X.L.); (Z.C.)
| | - Jun Deng
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.L.); (J.D.); (C.C.); (L.Z.); (X.L.); (Z.C.)
| | - Cui Chen
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.L.); (J.D.); (C.C.); (L.Z.); (X.L.); (Z.C.)
| | - Linda Zeng
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.L.); (J.D.); (C.C.); (L.Z.); (X.L.); (Z.C.)
| | - Xiaolan Lin
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.L.); (J.D.); (C.C.); (L.Z.); (X.L.); (Z.C.)
| | - Zhentao Cheng
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.L.); (J.D.); (C.C.); (L.Z.); (X.L.); (Z.C.)
| | - Gexia Qiao
- Key Laboratory of Zoological Systematics and Evolution, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China;
| | - Xiaolei Huang
- State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou 350002, China; (Q.L.); (J.D.); (C.C.); (L.Z.); (X.L.); (Z.C.)
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22
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Abstract
In diverse parasite taxa, from scale insects to root-knot nematodes, asexual lineages have exceptionally large host ranges, larger than those of their sexual relatives. Phylogenetic comparative studies of parasite taxa indicate that increases in host range and geographic range increase the probability of establishment of asexual lineages. At first pass, this convergence of traits appears counter-intuitive: intimate, antagonistic association with an enormous range of host taxa correlates with asexual reproduction, which should limit genetic variation within populations. Why would narrow host ranges favor sexual parasites and large host ranges favor asexual parasites? To take on this problem I link theory on ecological specialization to the two predominant hypotheses for the evolution of sex. I argue that both hypotheses predict a positive association between host range and the probability of invasion of asexual parasites, mediated either by variation in population size or in the strength of antagonistic coevolution. I also review hypotheses on colonization and the evolution of niche breadth in asexual lineages. I emphasize parasite taxa, with their diversity of reproductive modes and ecological strategies, as valuable assets in the hunt for solutions to the classic problems of the evolution of sex and geographic parthenogenesis.
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Affiliation(s)
- Amanda K Gibson
- Wissenschaftskolleg zu Berlin, Berlin, Germany.,Department of Biology, University of Virginia, Charlottesville, VA, USA
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23
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Sabatelli S, Liu M, Badano D, Mancini E, Trizzino M, Richard Cline A, Endrestøl A, Huang M, Audisio P. Molecular phylogeny and host‐plant use (Lamiaceae) of the
Thymogethes
pollen beetles (Coleoptera). ZOOL SCR 2019. [DOI: 10.1111/zsc.12384] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Simone Sabatelli
- Department of Biology and Biotechnologies “C. Darwin” Sapienza Università degli Studi di Roma Rome Italy
| | - Meike Liu
- Key Laboratory of Plant Protection Resources and Pest Management of Ministry of Education, Entomological Museum Northwest A&F University Yangling China
- College of Agriculture Yangtze University Jingzhou China
| | | | - Emiliano Mancini
- Department of Biology and Biotechnologies “C. Darwin” Sapienza Università degli Studi di Roma Rome Italy
| | - Marco Trizzino
- Gene Expression and Regulation Program The Wistar Institute Philadelphia PA USA
| | - Andrew Richard Cline
- Plant Pest Diagnostics Center California Department of Food & Agriculture Sacramento CA USA
| | | | - Min Huang
- Key Laboratory of Plant Protection Resources and Pest Management of Ministry of Education, Entomological Museum Northwest A&F University Yangling China
| | - Paolo Audisio
- Department of Biology and Biotechnologies “C. Darwin” Sapienza Università degli Studi di Roma Rome Italy
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24
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Erin NI, Benesh DP, Henrich T, Samonte IE, Jakobsen PJ, Kalbe M. Examining the role of parasites in limiting unidirectional gene flow between lake and river sticklebacks. J Anim Ecol 2019; 88:1986-1997. [PMID: 31365124 DOI: 10.1111/1365-2656.13080] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2018] [Accepted: 07/09/2019] [Indexed: 12/01/2022]
Abstract
Parasites are important selective agents with the potential to limit gene flow between host populations by shaping local host immunocompetence. We report on a contact zone between lake and river three-spined sticklebacks (Gasterosteus aculeatus) that offers the ideal biogeographic setting to explore the role of parasite-mediated selection on reproductive isolation. A waterfall acts as a natural barrier and enforces unidirectional migration from the upstream river stickleback population to the downstream river and lake populations. We assessed population genetic structure and parasite communities over four years. In a set of controlled experimental infections, we compared parasite susceptibility of upstream and downstream fish by exposing laboratory-bred upstream river and lake fish, as well as hybrids, to two common lake parasite species: a generalist trematode parasite, Diplostomum pseudospathaceum, and a host-specific cestode, Schistocephalus solidus. We found consistent genetic differentiation between upstream and downstream populations across four sampling years, even though the downstream river consisted of ~10% first-generation migrants from the upstream population as detected by parentage analysis. Fish in the upstream population had lower genetic diversity and were strikingly devoid of macroparasites. Through experimental infections, we demonstrated that upstream fish and their hybrids had higher susceptibility to parasite infections than downstream fish. Despite this, naturally sampled upstream migrants were less infected than downstream residents. Thus, migrants coming from a parasite-free environment may enjoy an initial fitness advantage, but their descendants seem likely to suffer from higher parasite loads. Our results suggest that adaptation to distinct parasite communities can influence stickleback invasion success and may represent a barrier to gene flow, even between close and connected populations.
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Affiliation(s)
- Noémie I Erin
- Department of Evolutionary Ecology, Max Planck Institute for Evolutionary Biology, Plön, Germany
| | - Daniel P Benesh
- Molecular Parasitology, Humboldt University, Berlin, Germany
| | - Tina Henrich
- Department of Evolutionary Ecology, Max Planck Institute for Evolutionary Biology, Plön, Germany
| | - Irene E Samonte
- Department of Evolutionary Ecology, Max Planck Institute for Evolutionary Biology, Plön, Germany
| | - Per J Jakobsen
- Department of Biology, University of Bergen, Bergen, Norway
| | - Martin Kalbe
- Department of Evolutionary Ecology, Max Planck Institute for Evolutionary Biology, Plön, Germany
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25
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Sentis A, Bertram R, Dardenne N, Ramon-Portugal F, Louit I, Le Trionnaire G, Simon JC, Magro A, Pujol B, Hemptinne JL, Danchin E. Different phenotypic plastic responses to predators observed among aphid lineages specialized on different host plants. Sci Rep 2019; 9:9017. [PMID: 31227730 PMCID: PMC6588606 DOI: 10.1038/s41598-019-45220-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2018] [Accepted: 05/29/2019] [Indexed: 11/09/2022] Open
Abstract
The role of intraspecific variation in the magnitude and direction of plastic responses in ecology and evolution is increasingly recognized. However, the factors underlying intraspecific variation in plastic responses remain largely unexplored, particularly for the hypothesis that the herbivores' phenotypic response to predators might vary amongst lineages associated with different host plants. Here, we tested whether plant-specialized lineages of the pea aphid, Acyrthosiphon pisum, differed in their transgenerational phenotypic response to ladybird predators (i.e., the asexual production of winged offspring by wingless mothers). In a full factorial laboratory experiment, we found that six aphid clonal lineages each specialized either on alfalfa or clover significantly differed in their transgenerational phenotypic response to predators. Some lineages produced an increased number of winged aphids in predator presence while others did not respond. Aphid lineages specialized on alfalfa had stronger phenotypic responses to predators than those specialized on clover. Although we tested only six aphid lineages from two biotypes, our results imply that intraspecific variation in prey phenotypic response of herbivores to predators differs amongst lineages specialized on different host plants. Our findings therefore raise the question of the influence of plant specialization in shaping herbivore phenotypic responses, and highlight the need to consider multi-trophic interactions to understand the causes and consequences of intraspecific variation in complex phenotypic traits.
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Affiliation(s)
- Arnaud Sentis
- UMR-5174; EDB (Laboratoire Évolution & Diversité Biologique), CNRS, Université Toulouse III-Paul Sabatier, IRD, 18 route de Narbonne, F-31062, Toulouse, Cedex 9, France. .,IRSTEA, Aix Marseille Univ., UMR RECOVER, 3275 route Cézanne, 13182, Aix-en-Provence, France.
| | - Raphaël Bertram
- UMR-5174; EDB (Laboratoire Évolution & Diversité Biologique), CNRS, Université Toulouse III-Paul Sabatier, IRD, 18 route de Narbonne, F-31062, Toulouse, Cedex 9, France
| | - Nathalie Dardenne
- UMR-5174; EDB (Laboratoire Évolution & Diversité Biologique), CNRS, Université Toulouse III-Paul Sabatier, IRD, 18 route de Narbonne, F-31062, Toulouse, Cedex 9, France
| | - Felipe Ramon-Portugal
- UMR-5174; EDB (Laboratoire Évolution & Diversité Biologique), CNRS, Université Toulouse III-Paul Sabatier, IRD, 18 route de Narbonne, F-31062, Toulouse, Cedex 9, France
| | - Ines Louit
- UMR-5174; EDB (Laboratoire Évolution & Diversité Biologique), CNRS, Université Toulouse III-Paul Sabatier, IRD, 18 route de Narbonne, F-31062, Toulouse, Cedex 9, France
| | - Gaël Le Trionnaire
- UMR 1349; IGEPP (Institut de Génétique, Environnement et Protection des Plantes); INRA, Agrocampus Ouest, Université Rennes 1; Domaine de la Motte B.P. 35327, F-35653 Le Rheu cedex, Rennes, France
| | - Jean-Christophe Simon
- UMR 1349; IGEPP (Institut de Génétique, Environnement et Protection des Plantes); INRA, Agrocampus Ouest, Université Rennes 1; Domaine de la Motte B.P. 35327, F-35653 Le Rheu cedex, Rennes, France
| | - Alexandra Magro
- UMR-5174; EDB (Laboratoire Évolution & Diversité Biologique), CNRS, Université Toulouse III-Paul Sabatier, IRD, 18 route de Narbonne, F-31062, Toulouse, Cedex 9, France
| | - Benoit Pujol
- UMR-5174; EDB (Laboratoire Évolution & Diversité Biologique), CNRS, Université Toulouse III-Paul Sabatier, IRD, 18 route de Narbonne, F-31062, Toulouse, Cedex 9, France.,PSL Université Paris, EPHE-UPVD-CNRS, USR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan, Cedex, France
| | - Jean-Louis Hemptinne
- UMR-5174; EDB (Laboratoire Évolution & Diversité Biologique), CNRS, Université Toulouse III-Paul Sabatier, IRD, 18 route de Narbonne, F-31062, Toulouse, Cedex 9, France
| | - Etienne Danchin
- UMR-5174; EDB (Laboratoire Évolution & Diversité Biologique), CNRS, Université Toulouse III-Paul Sabatier, IRD, 18 route de Narbonne, F-31062, Toulouse, Cedex 9, France
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26
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Loxdale HD. Aspects, Including Pitfalls, of Temporal Sampling of Flying Insects, with Special Reference to Aphids. INSECTS 2018; 9:E153. [PMID: 30388726 PMCID: PMC6316496 DOI: 10.3390/insects9040153] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 09/10/2018] [Revised: 10/26/2018] [Accepted: 10/26/2018] [Indexed: 12/31/2022]
Abstract
Since the advent and widespread use of high-resolution molecular markers in the late 1970s, it is now well established that natural populations of insects are not necessarily homogeneous genetically and show variations at different spatial scales due to a variety of reasons, including hybridization/introgression events. In a similar vein, populations of insects are not necessarily homogenous in time, either over the course of seasons or even within a single season. This of course has profound consequences for surveys examining, for whatever reason/s, the temporal population patterns of insects, especially flying insects as mostly discussed here. In the present article, the topics covered include climate and climate change; changes in ecological niches due to changes in available hosts, i.e., essentially, adaptation events; hybridization influencing behaviour⁻host shifts; infection by pathogens and parasites/parasitoids; habituation to light, sound and pheromone lures; chromosomal/genetic changes affecting physiology and behaviour; and insecticide resistance. If such phenomena-i.e., aspects and pitfalls-are not considered during spatio-temporal study programmes, which is even more true in the light of the recent discovery of morphologically similar/identical cryptic species, then the conclusions drawn in terms of the efforts to combat pest insects or conserve rare and endangered species may be in error and hence end in failure.
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Affiliation(s)
- Hugh D Loxdale
- School of Biosciences, Cardiff University, The Sir Martin Evans Building, Museum Avenue, Cardiff CF10 3AX, Wales, UK.
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27
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Zhou Y, Sun D, Quan WL, Ding N, Liu W, Ma WH, Wang XP. Divergence in larval diapause induction between the rice and water-oat populations of the striped stem borer, Chilo suppressalis (Walker) (Lepidoptera: Crambidae). ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2018; 25:29715-29724. [PMID: 30145755 DOI: 10.1007/s11356-018-2930-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Accepted: 08/06/2018] [Indexed: 06/08/2023]
Abstract
Differences in diapause traits can result in the seasonal reproductive isolation of host plant-associated insect populations and thereby facilitate the population divergence. The striped stem borer, Chilo suppressalis, has two host plant-associated populations: rice population and water-oat population. Several studies have found evidence that seasonal reproductive isolation between these populations is at least partially due to interpopulation differences in diapause. However, there still lack unambiguous evidence comparing characteristics of diapause induction for both populations. We compared the photoperiodic response and the age of peak photoperiod sensitivity of these populations and used RNA-Seq to compare the molecular response of diapause induction between populations. The photoperiodic response of the two populations differed at 25 °C; the critical night length of larvae from the rice population was 11 h and 20 min, whereas no obvious critical night length was in those from the water-oat population. In rice population, larvae were most sensitive to photoperiod at 9-12 days of age, whereas in water-oat population, larvae were the most sensitive to photoperiod at 9-10 days of age. The RNA-Seq results indicated that there were several differences in the molecular response of diapause induction and small overlap in differentially expressed genes (DEGs) between populations. Furthermore, GO analysis indicated that both rice and water-oat population's DEGs were significantly enriched in heme and iron binding. Besides, water-oat population's DEGs were significantly enriched in metabolizing nutrients but rice population's DEGs do not. Thus, our results described differences in diapause induction between rice and water-oat populations of C. suppressalis which could affect the timing of diapause and thereby contribute to the seasonal reproductive isolation of these host plant-associated populations. In conclusion, this work suggests that difference in diapause induction could promote the population divergence in insects associated with different host plants.
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Affiliation(s)
- Yuan Zhou
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Dan Sun
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Wei-Li Quan
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Nan Ding
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Wen Liu
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China.
| | - Wei-Hua Ma
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China
| | - Xiao-Ping Wang
- Hubei Insect Resources Utilization and Sustainable Pest Management Key Laboratory, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, People's Republic of China.
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28
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Nouhaud P, Gautier M, Gouin A, Jaquiéry J, Peccoud J, Legeai F, Mieuzet L, Smadja CM, Lemaitre C, Vitalis R, Simon JC. Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races. Mol Ecol 2018; 27:3287-3300. [PMID: 30010213 DOI: 10.1111/mec.14799] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2017] [Revised: 06/01/2018] [Accepted: 06/11/2018] [Indexed: 01/01/2023]
Abstract
Identifying the genomic bases of adaptation to novel environments is a long-term objective in evolutionary biology. Because genetic differentiation is expected to increase between locally adapted populations at the genes targeted by selection, scanning the genome for elevated levels of differentiation is a first step towards deciphering the genomic architecture underlying adaptive divergence. The pea aphid Acyrthosiphon pisum is a model of choice to address this question, as it forms a large complex of plant-specialized races and cryptic species, resulting from recent adaptive radiation. Here, we characterized genomewide polymorphisms in three pea aphid races specialized on alfalfa, clover and pea crops, respectively, which we sequenced in pools (poolseq). Using a model-based approach that explicitly accounts for selection, we identified 392 genomic hotspots of differentiation spanning 47.3 Mb and 2,484 genes (respectively, 9.12% of the genome size and 8.10% of its genes). Most of these highly differentiated regions were located on the autosomes, and overall differentiation was weaker on the X chromosome. Within these hotspots, high levels of absolute divergence between races suggest that these regions experienced less gene flow than the rest of the genome, most likely by contributing to reproductive isolation. Moreover, population-specific analyses showed evidence of selection in every host race, depending on the hotspot considered. These hotspots were significantly enriched for candidate gene categories that control host-plant selection and use. These genes encode 48 salivary proteins, 14 gustatory receptors, 10 odorant receptors, five P450 cytochromes and one chemosensory protein, which represent promising candidates for the genetic basis of host-plant specialization and ecological isolation in the pea aphid complex. Altogether, our findings open new research directions towards functional studies, for validating the role of these genes on adaptive phenotypes.
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Affiliation(s)
| | - Mathieu Gautier
- CBGP, Univ Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, Montpellier, France
- Institut de Biologie Computationnelle, Univ Montpellier, Montpellier, France
| | - Anaïs Gouin
- INRA, UMR 1349 IGEPP, Le Rheu, France
- Inria/IRISA GenScale, Rennes, France
| | | | - Jean Peccoud
- Laboratoire Ecologie et Biologie des Interactions, UMR CNRS 7267, Université de Poitiers, Poitiers, France
| | - Fabrice Legeai
- INRA, UMR 1349 IGEPP, Le Rheu, France
- Inria/IRISA GenScale, Rennes, France
| | | | - Carole M Smadja
- Institut des Sciences de l'Evolution (UMR 5554) - CNRS - IRD - EPHE - CIRAD -Université de Montpellier, Montpellier, France
| | | | - Renaud Vitalis
- CBGP, Univ Montpellier, CIRAD, INRA, IRD, Montpellier SupAgro, Montpellier, France
- Institut de Biologie Computationnelle, Univ Montpellier, Montpellier, France
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29
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Orsucci M, Audiot P, Dorkeld F, Pommier A, Vabre M, Gschloessl B, Rialle S, Severac D, Bourguet D, Streiff R. Larval transcriptomic response to host plants in two related phytophagous lepidopteran species: implications for host specialization and species divergence. BMC Genomics 2018; 19:265. [PMID: 29669517 PMCID: PMC5907310 DOI: 10.1186/s12864-018-4589-x] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2017] [Accepted: 03/08/2018] [Indexed: 11/17/2022] Open
Abstract
Background Most phytophagous insects have morphological, behavioral and physiological adaptations allowing them to specialize on one or a few plant species. Identifying the mechanisms involved in host plant specialization is crucial to understand the role of divergent selection between different environments in species diversification, and to identify sustainable targets for the management of insect pest species. In the present study, we measured larval phenotypic and transcriptomic responses to host plants in two related phytophagous lepidopteran species: the European corn borer (ECB), a worldwide pest of maize, and the adzuki bean borer (ABB), which feeds of various dicotyledons. Our aim was to identify the genes and functions underlying host specialization and/or divergence between ECB and ABB. Results At the phenotypic level, we observed contrasted patterns of survival, weight gain and developmental time between ECB and ABB, and within ECB and ABB reared on two different host plants. At the transcriptomic level, around 8% of the genes were differentially expressed (DE) between species and/or host plant. 70% of these DE genes displayed a divergent pattern of expression between ECB and ABB, regardless of the host, while the remaining 30% were involved in the plastic response between hosts. We further categorized plastic DE genes according to their parallel or opposite pattern between ECB and ABB to specifically identify candidate genes involved in the species divergence by host specialization. These candidates highlighted a comprehensive response, involving functions related to plant recognition, digestion, detoxification, immunity and development. Last, we detected viral, bacterial, and yeast genes whose incidence contrasted ECB and ABB samples, and maize and mugwort conditions. We suggest that these microorganism communities might influence the survival, metabolism and defense patterns observed in ECB and ABB larvae. Conclusions The comprehensive approach developed in the present study allowed to identify phenotypic specialization patterns and underlying candidate molecular mechanisms, and highlighted the putative role of microorganisms in the insect-host plant interaction. These findings offer the opportunity to pinpoint specific and sustainable molecular or physiological targets for the regulation of ECB pest populations. Electronic supplementary material The online version of this article (10.1186/s12864-018-4589-x) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- M Orsucci
- CBGP UMR 1062, INRA-IRD-CIRAD-Montpellier SupAgro, Montferrier sur Lez, Montpellier, France. .,DGIMI UMR 1333, INRA-Université de Montpellier, Montpellier, France. .,Present address: Department of Ecology and Genetics, EBC, Uppsala University, Norbyvägen 18D, 75236, Uppsala, Sweden.
| | - P Audiot
- CBGP UMR 1062, INRA-IRD-CIRAD-Montpellier SupAgro, Montferrier sur Lez, Montpellier, France
| | - F Dorkeld
- CBGP UMR 1062, INRA-IRD-CIRAD-Montpellier SupAgro, Montferrier sur Lez, Montpellier, France
| | - A Pommier
- CBGP UMR 1062, INRA-IRD-CIRAD-Montpellier SupAgro, Montferrier sur Lez, Montpellier, France
| | - M Vabre
- MELGUEIL DIASCOPE UE 0398, INRA, Mauguio, France
| | - B Gschloessl
- CBGP UMR 1062, INRA-IRD-CIRAD-Montpellier SupAgro, Montferrier sur Lez, Montpellier, France
| | - S Rialle
- MGX-Montpellier GenomiX, c/o Institut de Génomique Fonctionnelle, Montpellier, France
| | - D Severac
- MGX-Montpellier GenomiX, c/o Institut de Génomique Fonctionnelle, Montpellier, France
| | - D Bourguet
- CBGP UMR 1062, INRA-IRD-CIRAD-Montpellier SupAgro, Montferrier sur Lez, Montpellier, France
| | - R Streiff
- CBGP UMR 1062, INRA-IRD-CIRAD-Montpellier SupAgro, Montferrier sur Lez, Montpellier, France.,DGIMI UMR 1333, INRA-Université de Montpellier, Montpellier, France
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30
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Menon M, Bagley JC, Friedline CJ, Whipple AV, Schoettle AW, Leal‐Sàenz A, Wehenkel C, Molina‐Freaner F, Flores‐Rentería L, Gonzalez‐Elizondo MS, Sniezko RA, Cushman SA, Waring KM, Eckert AJ. The role of hybridization during ecological divergence of southwestern white pine (
Pinus strobiformis
) and limber pine (
P. flexilis
). Mol Ecol 2018; 27:1245-1260. [DOI: 10.1111/mec.14505] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Revised: 12/19/2017] [Accepted: 12/21/2017] [Indexed: 12/11/2022]
Affiliation(s)
- Mitra Menon
- Integrative Life Sciences Virginia Commonwealth University Richmond VA USA
- Department of Biology Virginia Commonwealth University Richmond VA USA
| | - Justin C. Bagley
- Department of Biology Virginia Commonwealth University Richmond VA USA
- Departamento de Zoologia Universidade de Brasília Brasília DF Brazil
| | | | - Amy V. Whipple
- Department of Biological Sciences and Merriam Powel Center for Environmental Research Northern Arizona University Flagstaff AZ USA
| | - Anna W. Schoettle
- Rocky Mountain Research Station USDA Forest Service Ft. Collins CO USA
| | - Alejandro Leal‐Sàenz
- Programa Institucional de Doctorado en Ciencias Agropecuarias y Forestales Universidad Juárez del Estado de Durango Durango Mexico
| | - Christian Wehenkel
- Instituto de Silvicultura e Industria de la Madera Universidad Juarez del Estado de Durango Durango Mexico
| | - Francisco Molina‐Freaner
- Institutos de Geologia y Ecologia Universidad Nacional Autónoma de Mexico, Estación Regional del Noroeste Hermosillo Sonora Mexico
| | | | | | | | - Samuel A. Cushman
- Rocky Mountain Research Station USDA Forest Service Flagstaff AZ USA
| | | | - Andrew J. Eckert
- Department of Biology Virginia Commonwealth University Richmond VA USA
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31
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Riesch R, Plath M, Bierbach D. Ecology and evolution along environmental gradients. Curr Zool 2018; 64:193-196. [PMID: 30402059 PMCID: PMC5905473 DOI: 10.1093/cz/zoy015] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Affiliation(s)
- Rüdiger Riesch
- School of Biological Sciences, Centre for Ecology, Evolution and Behaviour, Royal Holloway University of London, Egham, Surrey TW20 0EX, UK
| | - Martin Plath
- College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - David Bierbach
- Department of Biology and Ecology of Fishes, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Müggelseedamm 310, Berlin, D-12587, Germany
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32
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McLean AHC, Parker BJ, Hrček J, Henry LM, Godfray HCJ. Insect symbionts in food webs. Philos Trans R Soc Lond B Biol Sci 2017; 371:rstb.2015.0325. [PMID: 27481779 PMCID: PMC4971179 DOI: 10.1098/rstb.2015.0325] [Citation(s) in RCA: 51] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 04/13/2016] [Indexed: 12/22/2022] Open
Abstract
Recent research has shown that the bacterial endosymbionts of insects are abundant and diverse, and that they have numerous different effects on their hosts' biology. Here we explore how insect endosymbionts might affect the structure and dynamics of insect communities. Using the obligate and facultative symbionts of aphids as an example, we find that there are multiple ways that symbiont presence might affect food web structure. Many symbionts are now known to help their hosts escape or resist natural enemy attack, and others can allow their hosts to withstand abiotic stress or affect host plant use. In addition to the direct effect of symbionts on aphid phenotypes there may be indirect effects mediated through trophic and non-trophic community interactions. We believe that by using data from barcoding studies to identify bacterial symbionts, this extra, microbial dimension to insect food webs can be better elucidated. This article is part of the themed issue ‘From DNA barcodes to biomes’.
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Affiliation(s)
- Ailsa H C McLean
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - Benjamin J Parker
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - Jan Hrček
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
| | - Lee M Henry
- Faculty of Earth and Life Sciences, University of Amsterdam, De Boelelaan 1085-1087, 1081 HV Amsterdam, The Netherlands
| | - H Charles J Godfray
- Department of Zoology, University of Oxford, South Parks Road, Oxford OX1 3PS, UK
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33
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Abstract
Experimental studies of the evolution of reproductive isolation (RI) in real time are a powerful way in which to reveal fundamental, early processes that initiate divergence. In a classic speciation experiment, populations of Drosophila pseudoobscura were subjected to divergent dietary selection and evolved significant positive assortative mating by diet. More recently, a direct role for the gut microbiome in determining this type of RI in Drosophila melanogaster has been proposed. Manipulation of the diet, and hence the gut microbiome, was reported to result in immediate assortative mating by diet, which could be eliminated by reducing gut microbes using antibiotics and recreated by adding back Lactobacillus plantarum We suggest that the evolutionary significance of this result is unclear. For example, in D. melanogaster, the microbiome is reported as flexible and largely environmentally determined. Therefore, microbiome-mediated RI would be transient and would break down under dietary variation. In the absence of evolutionary coassociation or recurrent exposure between host and microbiome, there are no advantages for the gut bacteria or host in effecting RI. To explore these puzzling effects and their mechanisms further, we repeated the tests for RI associated with diet-specific gut microbiomes in D. melanogaster Despite observing replicable differences in the gut microbiomes of flies maintained on different diets, we found no evidence for diet-associated RI, for any role of gut bacteria, or for L. plantarum specifically. The results suggest that there is no general role for gut bacteria in driving the evolution of RI in this species and resolve an evolutionary riddle.
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34
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Gugger PF, Liang CT, Sork VL, Hodgskiss P, Wright JW. Applying landscape genomic tools to forest management and restoration of Hawaiian koa ( Acacia koa) in a changing environment. Evol Appl 2017; 11:231-242. [PMID: 29387158 PMCID: PMC5775490 DOI: 10.1111/eva.12534] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2017] [Accepted: 08/07/2017] [Indexed: 02/06/2023] Open
Abstract
Identifying and quantifying the importance of environmental variables in structuring population genetic variation can help inform management decisions for conservation, restoration, or reforestation purposes, in both current and future environmental conditions. Landscape genomics offers a powerful approach for understanding the environmental factors that currently associate with genetic variation, and given those associations, where populations may be most vulnerable under future environmental change. Here, we applied genotyping by sequencing to generate over 11,000 single nucleotide polymorphisms from 311 trees and then used nonlinear, multivariate environmental association methods to examine spatial genetic structure and its association with environmental variation in an ecologically and economically important tree species endemic to Hawaii, Acacia koa. Admixture and principal components analyses showed that trees from different islands are genetically distinct in general, with the exception of some genotypes that match other islands, likely as the result of recent translocations. Gradient forest and generalized dissimilarity models both revealed a strong association between genetic structure and mean annual rainfall. Utilizing a model for projected future climate on the island of Hawaii, we show that predicted changes in rainfall patterns may result in genetic offset, such that trees no longer may be genetically matched to their environment. These findings indicate that knowledge of current and future rainfall gradients can provide valuable information for the conservation of existing populations and also help refine seed transfer guidelines for reforestation or replanting of koa throughout the state.
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Affiliation(s)
- Paul F Gugger
- Ecology and Evolutionary Biology University of California Los Angeles CA USA.,Appalachian Laboratory University of Maryland Center for Environmental Science Frostburg MD USA
| | | | - Victoria L Sork
- Ecology and Evolutionary Biology University of California Los Angeles CA USA.,Institute of the Environment and Sustainability University of California Los Angeles Los Angeles CA USA
| | - Paul Hodgskiss
- USDA Forest Service Pacific Southwest Research Station Davis CA USA
| | - Jessica W Wright
- USDA Forest Service Pacific Southwest Research Station Davis CA USA
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35
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Loxdale HD, Balog A. Aphid specialism as an example of ecological-evolutionary divergence. Biol Rev Camb Philos Soc 2017; 93:642-657. [PMID: 28836372 DOI: 10.1111/brv.12361] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2017] [Revised: 07/10/2017] [Accepted: 07/12/2017] [Indexed: 11/30/2022]
Abstract
Debate still continues around the definition of generalism and specialism in nature. To some, generalism is equated solely with polyphagy, but this cannot be readily divorced from other essential biological factors, such as morphology, behaviour, genetics, biochemistry, chemistry and ecology, including chemical ecology. Viewed in this light, and accepting that when living organisms evolve to fill new ecological-evolutionary niches, this is the primal act of specialisation, then perhaps all living organisms are specialist in the broadest sense. To illustrate the levels of specialisation that may be found in a group of animals, we here provide an overview of those displayed by a subfamily of hemipteran insects, the Aphididae, which comprises some 1600 species/subspecies in Europe alone and whose members are specialised in a variety of lifestyle traits. These include life cycle, host adaptation, dispersal and migration, associations with bacterial symbionts (in turn related to host adaptation and resistance to hymenopterous wasp parasitoids), mutualisms with ants, and resistance to insecticides. As with polyphagy, these traits cannot easily be separated from one another, but rather, are interconnected, often highly so, which makes the Aphididae a fascinating animal group to study, providing an informative, perhaps unique, model to illustrate the complexities of defining generalism versus specialism.
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Affiliation(s)
- Hugh D Loxdale
- School of Biosciences, Cardiff University, Cardiff, CF10 3AX, U.K
| | - Adalbert Balog
- Faculty of Technical and Human Science, Department of Horticulture, Sapientia Hungarian University of Transylvania, 540485, Tirgu-Mures, Romania
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36
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Deschepper P, Brys R, Fortuna MA, Jacquemyn H. Analysis of spatial genetic variation reveals genetic divergence among populations of Primula veris associated to contrasting habitats. Sci Rep 2017; 7:8847. [PMID: 28821787 PMCID: PMC5562905 DOI: 10.1038/s41598-017-09154-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2017] [Accepted: 07/24/2017] [Indexed: 12/01/2022] Open
Abstract
Genetic divergence by environment is a process whereby selection causes the formation of gene flow barriers between populations adapting to contrasting environments and is often considered to be the onset of speciation. Nevertheless, the extent to which genetic differentiation by environment on small spatial scales can be detected by means of neutral markers is still subject to debate. Previous research on the perennial herb Primula veris has shown that plants from grassland and forest habitats showed pronounced differences in phenology and flower morphology, suggesting limited gene flow between habitats. To test this hypothesis, we sampled 33 populations of P. veris consisting of forest and grassland patches and used clustering techniques and network analyses to identify sets of populations that are more connected to each other than to other sets of populations and estimated the timing of divergence. Our results showed that spatial genetic variation had a significantly modular structure and consisted of four well-defined modules that almost perfectly coincided with habitat features. Genetic divergence was estimated to have occurred about 114 generations ago, coinciding with historic major changes in the landscape. Overall, these results illustrate how populations adapting to different environments become structured genetically within landscapes on small spatial scales.
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Affiliation(s)
- Pablo Deschepper
- Division of Plant Ecology and Systematics, Biology Department, University of Leuven, Leuven, Belgium.
| | - Rein Brys
- Research Institute for Forest and Nature, Gaverstraat 4, B-9500, Geraardsbergen, Belgium
| | - Miguel A Fortuna
- Department of Evolutionary Biology and Environmental Studies. University of Zurich, Zurich, Switzerland
| | - Hans Jacquemyn
- Division of Plant Ecology and Systematics, Biology Department, University of Leuven, Leuven, Belgium
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37
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Porter CK, Benkman CW. Assessing the Potential Contributions of Reduced Immigrant Viability and Fecundity to Reproductive Isolation. Am Nat 2017; 189:580-591. [DOI: 10.1086/691191] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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38
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Lee Y, Lee W, Kanturski M, Foottit RG, Akimoto SI, Lee S. Cryptic diversity of the subfamily Calaphidinae (Hemiptera: Aphididae) revealed by comprehensive DNA barcoding. PLoS One 2017; 12:e0176582. [PMID: 28448639 PMCID: PMC5407777 DOI: 10.1371/journal.pone.0176582] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Accepted: 04/12/2017] [Indexed: 12/16/2022] Open
Abstract
Aphids are a species rich group comprising many important pests. However, species identification can be very difficult for aphids due to their morphological ambiguity. DNA barcoding has been widely adopted for rapid and reliable species identification as well as cryptic species detection. In this study, we investigated cryptic diversity in the subfamily Calaphidinae (Hemiptera: Aphididae) based on 899 sequences of cytochrome c oxidase I (COI) for 115 morphospecies (78 species collected in this study and sequences of 73 species downloaded from Genbank). Among these 115 morphospecies, DNA barcoding results of 90 (78.3%) species were identical to results of morphological identification. However, 25 (21.7%) morphospecies showed discrepancies between DNA barcoding and traditional taxonomy. Among these 25 discordances, a total of 15 cryptic species were identified from 12 morphospecies. We also found three morphologically distinct species pairs that sharing DNA barcoding. Based on molecular operational taxonomic unit (MOTU) estimation, we discussed on species delimitation threshold value for these taxa. Our findings confirm that Calaphidinae has high cryptic diversity even though aphids are relatively well-studied.
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Affiliation(s)
- Yerim Lee
- Laboratory of Insect Biosystematics, Department of Agricultural Biotechnology, Seoul National University, Seoul, Republic of Korea
- Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea
| | - Wonhoon Lee
- Department of Plant Medicine and Institute of Agriculture & Life Science, Gyeongsang National University, Jinju, Korea
| | - Mariusz Kanturski
- Department of Zoology, Faculty of Biology and Environmental Protection, University of Silesia, Bankowa, Katowice, Poland
| | - Robert G. Foottit
- Invertebrate Biodiversity, National Environmental Health Program, Agriculture and Agri-Food Canada, Ottawa, Ontario, Canada
| | - Shin-Ichi Akimoto
- Laboratory of Systematic Entomology, Department of Ecology and Systematics, Graduate School of Agriculture, Hokkaido University, Kita-ku, Sapporo, Japan
| | - Seunghwan Lee
- Laboratory of Insect Biosystematics, Department of Agricultural Biotechnology, Seoul National University, Seoul, Republic of Korea
- Research Institute of Agriculture and Life Sciences, Seoul National University, Seoul, Republic of Korea
- * E-mail:
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39
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Matsuda J, Maeda Y, Nagasawa J, Setoguchi H. Tight species cohesion among sympatric insular wild gingers (Asarum spp. Aristolochiaceae) on continental islands: Highly differentiated floral characteristics versus undifferentiated genotypes. PLoS One 2017; 12:e0173489. [PMID: 28301540 PMCID: PMC5354281 DOI: 10.1371/journal.pone.0173489] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2016] [Accepted: 02/21/2017] [Indexed: 11/19/2022] Open
Abstract
The Amami Island group of the Ryukyu Archipelago, Japan, harbors extensive species diversity of Asarum in a small landmass. The fine-scale population genetic structure and diversity of nine insular endemic Asarum species were examined using nuclear DNA microsatellite loci and ITS sequences. High population genetic diversity (HS = 0.45-0.79) was estimated based on the microsatellites, implying outcrossing of Asarum species within populations accompanied by inbreeding. Bayesian clustering analyses revealed that species were divided into three robust genetic clusters and that the species within each cluster had a homogeneous genetic structure, indicating incomplete lineage sorting. This conclusion was supported by an ITS phylogeny. The degree of genetic differentiation among species was very low both within and between clusters (FST = 0.096-0.193, and 0.096-0.266, respectively). Although species can be crossed artificially to produce fertile hybrids, our results indicate that there is very little evidence of hybridization or introgression occurring among species in the wild, even within stands composed of multiple sympatric species. The highly differentiated floral morphology of the studied species is likely to impose reproductive isolation between them and maintain their integrity in the wild. A lack of genetic differentiation between sympatric species suggests that speciation within this group occurred rapidly and recently.
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Affiliation(s)
- Junshi Matsuda
- Graduate School of Human and Environmental Studies, Kyoto University, Yoshida Nihonmatsu-cho, Sakyo-ku, Kyoto, Japan
| | | | - Junichi Nagasawa
- Kyoto Botanical Garden, Shimokamo Hangi-cho, Sakyo-ku, Kyoto, Japan
| | - Hiroaki Setoguchi
- Graduate School of Human and Environmental Studies, Kyoto University, Yoshida Nihonmatsu-cho, Sakyo-ku, Kyoto, Japan
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40
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Hua X, Bromham L. Darwinism for the Genomic Age: Connecting Mutation to Diversification. Front Genet 2017; 8:12. [PMID: 28224003 PMCID: PMC5293951 DOI: 10.3389/fgene.2017.00012] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2016] [Accepted: 01/19/2017] [Indexed: 12/30/2022] Open
Abstract
A growing body of evidence suggests that rates of diversification of biological lineages are correlated with differences in genome-wide mutation rate. Given that most research into differential patterns of diversification rate have focused on species traits or ecological parameters, a connection to the biochemical processes of genome change is an unexpected observation. While the empirical evidence for a significant association between mutation rate and diversification rate is mounting, there has been less effort in explaining the factors that mediate this connection between genetic change and species richness. Here we draw together empirical studies and theoretical concepts that may help to build links in the explanatory chain that connects mutation to diversification. First we consider the way that mutation rates vary between species. We then explore how differences in mutation rates have flow-through effects to the rate at which populations acquire substitutions, which in turn influences the speed at which populations become reproductively isolated from each other due to the acquisition of genomic incompatibilities. Since diversification rate is commonly measured from phylogenetic analyses, we propose a conceptual approach for relating events of reproductive isolation to bifurcations on molecular phylogenies. As we examine each of these relationships, we consider theoretical models that might shine a light on the observed association between rate of molecular evolution and diversification rate, and critically evaluate the empirical evidence for these links, focusing on phylogenetic comparative studies. Finally, we ask whether we are getting closer to a real understanding of the way that the processes of molecular evolution connect to the observable patterns of diversification.
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Affiliation(s)
- Xia Hua
- Centre for Macroevolution and Macroecology, Research School of Biology, Australian National University, Canberra ACT, Australia
| | - Lindell Bromham
- Centre for Macroevolution and Macroecology, Research School of Biology, Australian National University, Canberra ACT, Australia
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41
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Bagley RK, Sousa VC, Niemiller ML, Linnen CR. History, geography and host use shape genomewide patterns of genetic variation in the redheaded pine sawfly (
Neodiprion lecontei
). Mol Ecol 2017; 26:1022-1044. [DOI: 10.1111/mec.13972] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2015] [Revised: 11/10/2016] [Accepted: 12/01/2016] [Indexed: 01/03/2023]
Affiliation(s)
- Robin K. Bagley
- Department of Biology University of Kentucky Lexington KY 40506 USA
| | - Vitor C. Sousa
- cE3c ‐ Centre for Ecology, Evolution and Environmental Changes Faculdade de Ciências Universidade de Lisboa 1749‐016 Lisboa Portugal
| | - Matthew L. Niemiller
- Illinois Natural History Survey Prairie Research Institute University of Illinois Urbana‐Champaign Champaign IL 61820 USA
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42
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Vorburger C, Herzog J, Rouchet R. Aphid specialization on different summer hosts is associated with strong genetic differentiation and unequal symbiont communities despite a common mating habitat. J Evol Biol 2017; 30:762-772. [PMID: 28055138 DOI: 10.1111/jeb.13040] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Revised: 12/06/2016] [Accepted: 01/02/2017] [Indexed: 01/03/2023]
Abstract
Specialization on different host plants can promote evolutionary diversification of herbivorous insects. Work on pea aphids (Acyrthosiphon pisum) has contributed significantly to the understanding of this process, demonstrating that populations associated with different host plants exhibit performance trade-offs across hosts, show adaptive host choice and genetic differentiation and possess different communities of bacterial endosymbionts. Populations specialized on different secondary host plants during the parthenogenetic summer generations are also described for the black bean aphid (Aphis fabae complex) and are usually treated as different (morphologically cryptic) subspecies. In contrast to pea aphids, however, host choice and mate choice are decoupled in black bean aphids, because populations from different summer hosts return to the same primary host plant to mate and lay overwintering eggs. This could counteract evolutionary divergence, and it is currently unknown to what extent black bean aphids using different summer hosts are indeed differentiated. We addressed this question by microsatellite genotyping and endosymbiont screening of black bean aphids collected in summer from the goosefoot Chenopodium album (subspecies A. f. fabae) and from thistles of the genus Cirsium (subspecies A. f. cirsiiacanthoides) across numerous sites in Switzerland and France. Our results show clearly that aphids from Cirsium and Chenopodium exhibit strong and geographically consistent genetic differentiation and that they differ in their frequencies of infection with particular endosymbionts. The dependence on a joint winter host has thus not prevented the evolutionary divergence into summer host-adapted populations that appear to have evolved mechanisms of reproductive isolation within a common mating habitat.
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Affiliation(s)
- C Vorburger
- EAWAG, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland.,Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland
| | - J Herzog
- EAWAG, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland
| | - R Rouchet
- EAWAG, Swiss Federal Institute of Aquatic Science and Technology, Dübendorf, Switzerland.,Institute of Integrative Biology, ETH Zürich, Zürich, Switzerland
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43
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Ingley SJ, Pruitt JN, Scharf I, Purcell J. Social context, but not individual personality, alters immigrant viability in a spider with mixed social structure. Anim Behav 2016. [DOI: 10.1016/j.anbehav.2016.08.009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
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44
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Hanson D, Moore JS, Taylor EB, Barrett RDH, Hendry AP. Assessing reproductive isolation using a contact zone between parapatric lake-stream stickleback ecotypes. J Evol Biol 2016; 29:2491-2501. [PMID: 27633750 DOI: 10.1111/jeb.12978] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2016] [Accepted: 09/02/2016] [Indexed: 01/09/2023]
Abstract
Ecological speciation occurs when populations evolve reproductive isolation as a result of divergent natural selection. This isolation can be influenced by many potential reproductive barriers, including selection against hybrids, selection against migrants and assortative mating. How and when these barriers act and interact in nature is understood for relatively few empirical systems. We used a mark-recapture experiment in a contact zone between lake and stream three-spined sticklebacks (Gasterosteus aculeatus, Linnaeus) to evaluate the occurrence of hybrids (allowing inferences about mating isolation), the interannual survival of hybrids (allowing inferences about selection against hybrids) and the shift in lake-like vs. stream-like characteristics (allowing inferences about selection against migrants). Genetic and morphological data suggest the occurrence of hybrids and no selection against hybrids in general, a result contradictory to a number of other studies of sticklebacks. However, we did find selection against more lake-like individuals, suggesting a barrier to gene flow from the lake into the stream. Combined with previous work on this system, our results suggest that multiple (most weakly and often asymmetric) barriers must be combining to yield substantial restrictions on gene flow. This work provides evidence of a reproductive barrier in lake-stream sticklebacks and highlights the value of assessing multiple reproductive barriers in natural contexts.
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Affiliation(s)
- D Hanson
- Redpath Museum and Department of Biology, McGill University, Montreal, QC, Canada
| | - J-S Moore
- Institut de Biologie Intégrative et des Systèmes, Université Laval, Québec, QC, Canada
| | - E B Taylor
- Department of Zoology and Beaty Biodiversity Museum, University of British Columbia, Vancouver, BC, Canada
| | - R D H Barrett
- Redpath Museum and Department of Biology, McGill University, Montreal, QC, Canada
| | - A P Hendry
- Redpath Museum and Department of Biology, McGill University, Montreal, QC, Canada
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45
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Hamerlinck G, Hulbert D, Hood GR, Smith JJ, Forbes AA. Histories of host shifts and cospeciation among free‐living parasitoids of
Rhagoletis
flies. J Evol Biol 2016; 29:1766-79. [DOI: 10.1111/jeb.12909] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2016] [Revised: 05/20/2016] [Accepted: 05/23/2016] [Indexed: 02/05/2023]
Affiliation(s)
- G. Hamerlinck
- Department of Biology University of Iowa Iowa City IA USA
| | - D. Hulbert
- Department of Entomology Michigan State University East Lansing MI USA
| | - G. R. Hood
- Department of Biological Sciences University of Notre Dame South Bend IN USA
| | - J. J. Smith
- Department of Entomology Michigan State University East Lansing MI USA
| | - A. A. Forbes
- Department of Biology University of Iowa Iowa City IA USA
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46
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Ingley SJ, Camarillo H, Willis H, Johnson JB. Repeated evolution of local adaptation in swimming performance: population-level trade-offs between burst and endurance swimming inBrachyrhaphisfreshwater fish. Biol J Linn Soc Lond 2016. [DOI: 10.1111/bij.12852] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Affiliation(s)
- Spencer J. Ingley
- Evolutionary Ecology Laboratories; Department of Biology; Brigham Young University; Provo UT 84602 USA
| | - Henry Camarillo
- Evolutionary Ecology Laboratories; Department of Biology; Brigham Young University; Provo UT 84602 USA
| | - Hannah Willis
- Evolutionary Ecology Laboratories; Department of Biology; Brigham Young University; Provo UT 84602 USA
| | - Jerald B. Johnson
- Evolutionary Ecology Laboratories; Department of Biology; Brigham Young University; Provo UT 84602 USA
- Monte L. Bean Life Science Museum; Brigham Young University; Provo UT 84602 USA
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47
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Eigenbrode SD, Davis TS, Adams JR, Husebye DS, Waits LP, Hawthorne D. Host‐adapted aphid populations differ in their migratory patterns and capacity to colonize crops. J Appl Ecol 2016. [DOI: 10.1111/1365-2664.12693] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Sanford D. Eigenbrode
- Plant, Soil, and Entomological Sciences College of Agriculture and Life Sciences University of Idaho 875 Perimeter Drive Moscow ID 83844‐2339 USA
| | - Thomas S. Davis
- Forest and Rangeland Stewardship Colorado State University Fort Collins CO 80523‐1472 USA
| | - Jennifer R. Adams
- Department of Fish and Wildlife Sciences College of Natural Resources University of Idaho 875 Perimeter Drive Moscow ID 83844‐1136 USA
| | - Damon S. Husebye
- Plant, Soil, and Entomological Sciences College of Agriculture and Life Sciences University of Idaho 875 Perimeter Drive Moscow ID 83844‐2339 USA
| | - Lisette P. Waits
- Department of Fish and Wildlife Sciences College of Natural Resources University of Idaho 875 Perimeter Drive Moscow ID 83844‐1136 USA
| | - David Hawthorne
- Entomology Department College of Computer, Mathematical, and Natural Sciences University of Maryland College Park MD 20742 USA
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48
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Mitchell SM, Muehlbauer LK, Freedberg S. Nuclear introgression without mitochondrial introgression in two turtle species exhibiting sex-specific trophic differentiation. Ecol Evol 2016; 6:3280-8. [PMID: 27252833 PMCID: PMC4870212 DOI: 10.1002/ece3.2087] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2015] [Revised: 02/15/2016] [Accepted: 02/22/2016] [Indexed: 12/24/2022] Open
Abstract
Despite the presence of reproductive barriers between species, interspecific gene introgression has been documented in a range of natural systems. Comparing patterns of genetic introgression in biparental versus matrilineal markers can potentially reveal sex-specific barriers to interspecific gene flow. Hybridization has been documented in the freshwater turtles Graptemys geographica and G. pseudogeographica, whose ranges are largely sympatric. Morphological differentiation between the species is restricted to females, with female G. geographica possessing large heads and jaws compared to the narrow heads of G. pseudogeographica females. If hybrid females are morphologically intermediate, they may be less successful at exploiting parental feeding niches, thereby limiting the introgression of maternally inherited, but not biparental, molecular markers. We paired sequence data with stable isotope analysis and examined sex-specific genetic introgression and trophic differentiation in sympatric populations of G. geographica and G. pseudogeographica. We observed introgression from G. pseudogeographica into G. geographica at three nuclear loci, but not at the mitochondrial locus. Analysis of ∂(15)N and ∂(13)C was consistent with species differences in trophic positioning in females, but not males. These results suggest that ecological divergence in females may reduce the opportunity for gene flow in this system.
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Affiliation(s)
- Sarah M Mitchell
- Department of Ecology, Evolution, and Organismal Biology Iowa State University Ames Iowa 50011-1020
| | - Laura K Muehlbauer
- Department of Biology St. Olaf College 1520 St. Olaf Avenue Northfield Minnesota 55057
| | - Steven Freedberg
- Department of Biology St. Olaf College 1520 St. Olaf Avenue Northfield Minnesota 55057
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49
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Harrison RG, Larson EL. Heterogeneous genome divergence, differential introgression, and the origin and structure of hybrid zones. Mol Ecol 2016; 25:2454-66. [PMID: 26857437 DOI: 10.1111/mec.13582] [Citation(s) in RCA: 134] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2015] [Revised: 01/19/2016] [Accepted: 01/25/2016] [Indexed: 12/16/2022]
Abstract
Hybrid zones have been promoted as windows on the evolutionary process and as laboratories for studying divergence and speciation. Patterns of divergence between hybridizing species can now be characterized on a genomewide scale, and recent genome scans have focused on the presence of 'islands' of divergence. Patterns of heterogeneous genomic divergence may reflect differential introgression following secondary contact and provide insights into which genome regions contribute to local adaptation, hybrid unfitness and positive assortative mating. However, heterogeneous genome divergence can also arise in the absence of any gene flow, as a result of variation in selection and recombination across the genome. We suggest that to understand hybrid zone origins and dynamics, it is essential to distinguish between genome regions that are divergent between pure parental populations and regions that show restricted introgression where these populations interact in hybrid zones. The latter, more so than the former, reveal the likely genetic architecture of reproductive isolation. Mosaic hybrid zones, because of their complex structure and multiple contacts, are particularly good subjects for distinguishing primary intergradation from secondary contact. Comparisons among independent hybrid zones or transects that involve the 'same' species pair can also help to distinguish between divergence with gene flow and secondary contact. However, data from replicate hybrid zones or replicate transects do not reveal consistent patterns; in a few cases, patterns of introgression are similar across independent transects, but for many taxa, there is distinct lack of concordance, presumably due to variation in environmental context and/or variation in the genetics of the interacting populations.
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Affiliation(s)
- Richard G Harrison
- Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, 14853, USA
| | - Erica L Larson
- Division of Biological Sciences, University of Montana, Missoula, MT, 59812, USA
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50
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Gosden TP, Waller JT, Svensson EI. Asymmetric isolating barriers between different microclimatic environments caused by low immigrant survival. Proc Biol Sci 2016; 282:rspb.2014.2459. [PMID: 25631994 DOI: 10.1098/rspb.2014.2459] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Spatially variable selection has the potential to result in local adaptation unless counteracted by gene flow. Therefore, barriers to gene flow will help facilitate divergence between populations that differ in local selection pressures. We performed spatially and temporally replicated reciprocal field transplant experiments between inland and coastal habitats using males of the common blue damselfly (Enallagma cyathigerum) as our study organism. Males from coastal populations had lower local survival rates than resident males at inland sites, whereas we detected no differences between immigrant and resident males at coastal sites, suggesting asymmetric local adaptation in a source-sink system. There were no intrinsic differences in longevity between males from the different environments suggesting that the observed differences in male survival are environment-dependent and probably caused by local adaptation. Furthermore, the coastal environment was found to be warmer and drier than the inland environment, further suggesting local adaptation to microclimatic factors has lead to differential survival of resident and immigrant males. Our results suggest that low survival of immigrant males mediates isolation between closely located populations inhabiting different microclimatic environments.
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Affiliation(s)
- Thomas P Gosden
- Department of Biology, Evolutionary Ecology Unit, Lund University, Ecology Building, 223 62 Lund, Sweden
| | - John T Waller
- Department of Biology, Evolutionary Ecology Unit, Lund University, Ecology Building, 223 62 Lund, Sweden
| | - Erik I Svensson
- Department of Biology, Evolutionary Ecology Unit, Lund University, Ecology Building, 223 62 Lund, Sweden
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