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Buhlke EG, Hobbs AM, Rajput S, Rokusek B, Carlson DJ, Gillan C, Carlson KA. Characterization of Cross-Species Transmission of Drosophila melanogaster Nora Virus. Life (Basel) 2022; 12:1913. [PMID: 36431048 PMCID: PMC9697521 DOI: 10.3390/life12111913] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2022] [Revised: 11/07/2022] [Accepted: 11/15/2022] [Indexed: 11/19/2022] Open
Abstract
Drosophila melanogaster Nora virus (DmNV) is a novel picorna-like virus first characterized in 2006. Since then, Nora virus has been detected in several non-Drosophila species, including insects in the Orders Hymenoptera, Lepidoptera, Coleoptera, and Orthoptera. The objective of this study was to determine if DmNV could infect individuals of other species of invertebrates besides D. melanogaster. The presence of DmNV in native invertebrates and commercially available stocks was determined. Laboratory-reared D. yakuba, D. mercatorum, Gryllodes sigillatus, Tenebrio molitor, Galleria mellonella, and Musca domestica were intentionally infected with DmNV. In addition, native invertebrates were collected and D. melanogaster stocks were purchased and screened for DmNV presence using reverse transcription-polymerase chain reaction (RT-PCR) before being intentionally infected for study. All Drosophila species and other invertebrates, except M. domestica, that were intentionally infected with DmNV ended up scoring positive for the virus via RT-PCR. DmNV infection was also detected in three native invertebrates (Spilosoma virginica, Diplopoda, and Odontotaenius disjunctus) and all commercially available stocks tested. These findings suggest that DmNV readily infects individuals of other species of invertebrates, while also appearing to be an endemic virus in both wild and laboratory D. melanogaster populations. The detection of DmNV in commercially available stocks presents a cautionary message for scientists using these stocks in studies of virology and immunology.
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Affiliation(s)
- Ella G. Buhlke
- Central City Senior High School, 1510 28th Street, Central City, NE 68826, USA
- Department of Biology, University of Nebraska at Kearney, 2401 11th Ave, Kearney, NE 68849, USA
| | - Alexis M. Hobbs
- Department of Biology, University of Nebraska at Kearney, 2401 11th Ave, Kearney, NE 68849, USA
| | - Sunanda Rajput
- Department of Biology, University of Nebraska at Kearney, 2401 11th Ave, Kearney, NE 68849, USA
| | - Blase Rokusek
- Department of Biology, University of Nebraska at Kearney, 2401 11th Ave, Kearney, NE 68849, USA
| | - Darby J. Carlson
- Department of Biology, University of Nebraska at Kearney, 2401 11th Ave, Kearney, NE 68849, USA
| | - Chelle Gillan
- Central City Senior High School, 1510 28th Street, Central City, NE 68826, USA
| | - Kimberly A. Carlson
- Department of Biology, University of Nebraska at Kearney, 2401 11th Ave, Kearney, NE 68849, USA
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2
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Li T, Guan R, Wu Y, Chen S, Yuan G, Miao X, Li H. The Novel Agrotis ipsilon Nora Virus Confers Deleterious Effects to the Fitness of Spodoptera frugiperda (Lepidoptera: Noctuidae). Front Microbiol 2021; 12:727202. [PMID: 34867845 PMCID: PMC8634655 DOI: 10.3389/fmicb.2021.727202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/18/2021] [Accepted: 10/11/2021] [Indexed: 12/13/2022] Open
Abstract
In the present study, we identified a novel, positive-sense single-stranded RNA virus in the Chinese black cutworm, Agrotis ipsilon. It has a genome length of 11,312 nucleotides, excluding the poly(A) tails, and contains five open reading frames. The ORF2 encodes the conserved domains of RNA helicase and RNA-dependent RNA polymerase, while ORF4 and 5 encode three viral proteins. Herein, the A. ipsilon virus was clustered with a Helicoverpa armigera Nora virus and was thus provisionally named “Agrotis ipsilon Nora virus” (AINV). AINV was successfully transmitted into a novel host, Spodoptera frugiperda, through injection, causing a stable infection. This found the possibility of horizontal AINV transmission among moths belonging to the same taxonomic family. Nonetheless, AINV infection was deleterious to S. frugiperda and mainly mediated by antiviral and amino acid metabolism-related pathways. Furthermore, the infection significantly increased the S. frugiperda larval period but significantly reduced its moth eclosion rate. It suggests that AINV is probably to be a parasitic virus of S. frugiperda.
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Affiliation(s)
- Tong Li
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Ruobing Guan
- State Key Laboratory of Wheat and Maize Crop Science/College of Plant Protection, Henan Agricultural University, Zhengzhou, China
| | - Yuqing Wu
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Su Chen
- Key Laboratory of Insect Developmental and Evolutionary Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Shanghai, China
| | - Guohui Yuan
- Institute of Plant Protection/Henan Key Laboratory of Crop Pest Control/Key Laboratory of Integrated Pest Management on Crops in Southern Region of North China, Henan Academy of Agricultural Sciences, Zhengzhou, China
| | - Xuexia Miao
- Key Laboratory of Insect Developmental and Evolutionary Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Shanghai, China
| | - Haichao Li
- State Key Laboratory of Wheat and Maize Crop Science/College of Plant Protection, Henan Agricultural University, Zhengzhou, China.,Key Laboratory of Insect Developmental and Evolutionary Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Shanghai, China
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3
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Zhang J, Wang F, Yuan B, Yang L, Yang Y, Fang Q, Kuhn JH, Song Q, Ye G. A novel cripavirus of an ectoparasitoid wasp increases pupal duration and fecundity of the wasp's Drosophila melanogaster host. THE ISME JOURNAL 2021; 15:3239-3257. [PMID: 34007060 PMCID: PMC8528920 DOI: 10.1038/s41396-021-01005-w] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/14/2020] [Revised: 04/21/2021] [Accepted: 04/30/2021] [Indexed: 02/03/2023]
Abstract
We identified a 9332-nucleotide-long novel picornaviral genome sequence in the transcriptome of an agriculturally important parasitoid wasp (Pachycrepoideus vindemmiae (Rondani, 1875)). The genome of the novel virus, Rondani's wasp virus 1 (RoWV-1), contains two long open reading frames encoding a nonstructural and a structural protein, respectively, and is 3'-polyadenylated. Phylogenetic analyses firmly place RoWV-1 into the dicistrovirid genus Cripavirus. We detected RoWV-1 in various tissues and life stages of the parasitoid wasp, with the highest virus load measured in the larval digestive tract. We demonstrate that RoWV-1 is transmitted horizontally from infected to uninfected wasps but not vertically to wasp offspring. Comparison of several important biological parameters between the infected and uninfected wasps indicates that RoWV-1 does not have obvious detrimental effects on wasps. We further demonstrate that RoWV-1 also infects Drosophila melanogaster (Meigen, 1830), the hosts of the pupal ectoparasitoid wasps, and thereby increases its pupal developmental duration and fecundity, but decreases the eclosion rate. Together, these results suggest that RoWV-1 may have a potential benefit to the wasp by increasing not only the number of potential wasp hosts but also the developmental time of the hosts to ensure proper development of wasp offspring.
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Affiliation(s)
- Jiao Zhang
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Fei Wang
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Bo Yuan
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Lei Yang
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Yi Yang
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Qi Fang
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, Zhejiang Province, China
| | - Jens H Kuhn
- Integrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD, USA
| | - Qisheng Song
- Division of Plant Sciences, College of Agriculture, Food and Natural Resources, University of Missouri, Columbia, MO, USA.
| | - Gongyin Ye
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, Zhejiang Province, China.
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Meng E, Tang B, Li J, Fu L, Hou Y. The first complete genome sequence of an iflavirus from the endoparasitoid wasp Tetrastichus brontispae. Arch Virol 2021; 166:2333-2335. [PMID: 34075444 DOI: 10.1007/s00705-021-05118-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2020] [Accepted: 04/12/2021] [Indexed: 10/21/2022]
Abstract
The complete genome sequence of a novel iflavirus isolated from the gregarious and koinobiont endoparasitoid Tetrastichus brontispae, tentatively named "Tetrastichus brontispae RNA virus 3" (TbRV-3), was determined by total RNA and Sanger sequencing. The complete genome is 9998 nucleotides in length, 8934 nt of which encodes a putative polyprotein of 2978 amino acids. TbRV-3 was found to have a similar genome organization and to contain conserved domains and motifs found in other iflaviruses, with some variations. Phylogenetic analysis based on deduced amino acid sequences of the RdRp domain showed that TbRV-3 clustered with Dinocampus coccinellae paralysis virus (DcPV). However, the percent amino acid sequence identity of the putative capsid proteins of TbRV-3 and DcPV determined using BLASTp was below the species demarcation threshold (90%), suggesting that TbRV-3 is a new iflavirus. This is the first virus of the family Iflaviridae to be isolated from a wasp of the family Eulophidae.
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Affiliation(s)
- E Meng
- State Key Laboratory of Ecological Pest Control of Fujian-Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.,College of Rural Revitalization Research, Dezhou University, Dezhou, 253023, China
| | - Baozhen Tang
- State Key Laboratory of Ecological Pest Control of Fujian-Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.,Fujian Provincial Key Laboratory of Insect Ecology, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Jingyi Li
- State Key Laboratory of Ecological Pest Control of Fujian-Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.,The People's Government of Hedi Town, Yangquan, 045011, China
| | - Lang Fu
- State Key Laboratory of Ecological Pest Control of Fujian-Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.,Fujian Provincial Key Laboratory of Insect Ecology, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China
| | - Youming Hou
- State Key Laboratory of Ecological Pest Control of Fujian-Taiwan Crops, Fujian Agriculture and Forestry University, Fuzhou, 350002, China. .,Fujian Provincial Key Laboratory of Insect Ecology, College of Plant Protection, Fujian Agriculture and Forestry University, Fuzhou, 350002, China.
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5
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Abstract
The enormous diversity of RNA viruses in insects is continuously validated. Parasitoid wasps, as biocontrol insects which are widely used against insect pests in agroecosystems, may also carry many “good” RNA viruses. In this study, many virus-like fragments were obtained from transcriptomes of three wasp species, including Anisopteromalus calandrae (8), Lariophagus distinguendus (3), and Theocolax elegans (18), which can parasitize and control rice weevil Sitophilus oryzae, a serious insect pest of farm-stored grains. By further bioinformatic analysis and sequencing, we identified six novel RNA viruses with complete genomes and named them WWPSRV-1, WWPSRV-2, AcPSRV-1, AcNSRV-1, AcNSRV-2, and LdNSRV-1. PCR-based detection revealed that WWPSRV-1 and WWPSRV-2 had the possibility of interspecies virus transmission, especially WWPSRV-2, which was also present in the rice weevil adults. Phylogenetically, three out of these six viruses appeared to be members of order Picornavirales: WWPSRV-1 belonged to unassigned virus families of this order, whereas WWPSRV-2 and AcPSRV-1 belonged to families Iflaviridae and Dicistroviridae, respectively. The conserved picornavirus-typical domains helicase, protease, and RNA-dependent RNA polymerase could be found in the nonstructural protein encoded by the three viruses, whose genomes consisted of the different numbers of open reading frames (ORFs). The other three RNA viruses could be classified to order Mononegavirales: AcNSRV-1 and AcNSRV-2 belonged to family Lispiviridae, whereas LdNSRV-1 belonged to a big family Rhabdoviridae. The genomes of the three viruses contained at least five ORFs, encoding deduced proteins in the following order: 3′-N-P-M-G-L-5′. All the ORFs were separated by conserved intergenic sequences which likely regulated the transcription termination and initiation. Our findings enhance the understanding of RNA viruses in weevil wasps and set the foundation for the future study of the association among weevils, weevil wasps, and RNA viruses. IMPORTANCE The enormous diversity of RNA viruses in insects is continuously validated. Parasitoid wasps, as biocontrol insects which are widely used against insect pests in agroecosystems, may also carry many “good” RNA viruses. Some RNA viruses in parasitoid wasps have been reported to affect the host wasps or the wasps’ host. Here, six novel RNA viruses with complete genomes were identified in three parasitoid wasps of the rice weevil. One of these viruses was also detected in the rice weevil adults. Phylogenetically, WWPSRV-1 was the first unambiguous detection of Nora-like virus in insect parasitoids. WWPSRV-2 and AcPSRV-1 belong to families Iflaviridae and Dicistroviridae, some viruses of which can result in lethal infections in silkworms and honeybees. The other three RNA viruses belong to order Mononegavirales, which comprises many well-known insect-associated viruses.
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Laurinmäki P, Shakeel S, Ekström JO, Mohammadi P, Hultmark D, Butcher SJ. Structure of Nora virus at 2.7 Å resolution and implications for receptor binding, capsid stability and taxonomy. Sci Rep 2020; 10:19675. [PMID: 33184473 PMCID: PMC7661533 DOI: 10.1038/s41598-020-76613-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2020] [Accepted: 10/26/2020] [Indexed: 11/16/2022] Open
Abstract
Nora virus, a virus of Drosophila, encapsidates one of the largest single-stranded RNA virus genomes known. Its taxonomic affinity is uncertain as it has a picornavirus-like cassette of enzymes for virus replication, but the capsid structure was at the time for genome publication unknown. By solving the structure of the virus, and through sequence comparison, we clear up this taxonomic ambiguity in the invertebrate RNA virosphere. Despite the lack of detectable similarity in the amino acid sequences, the 2.7 Å resolution cryoEM map showed Nora virus to have T = 1 symmetry with the characteristic capsid protein β-barrels found in all the viruses in the Picornavirales order. Strikingly, α-helical bundles formed from the extended C-termini of capsid protein VP4B and VP4C protrude from the capsid surface. They are similar to signalling molecule folds and implicated in virus entry. Unlike other viruses of Picornavirales, no intra-pentamer stabilizing annulus was seen, instead the intra-pentamer stability comes from the interaction of VP4C and VP4B N-termini. Finally, intertwining of the N-termini of two-fold symmetry-related VP4A capsid proteins and RNA, provides inter-pentamer stability. Based on its distinct structural elements and the genetic distance to other picorna-like viruses we propose that Nora virus, and a small group of related viruses, should have its own family within the order Picornavirales.
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Affiliation(s)
- Pasi Laurinmäki
- HiLIFE-Institute of Biotechnology, University of Helsinki, Viikinkaari 9, P.O. Box 56, 00014, Helsinki, Finland
- Molecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9, P.O. Box 56, 00014, Helsinki, Finland
| | - Shabih Shakeel
- HiLIFE-Institute of Biotechnology, University of Helsinki, Viikinkaari 9, P.O. Box 56, 00014, Helsinki, Finland
- Molecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9, P.O. Box 56, 00014, Helsinki, Finland
- MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge, CB2 0QH, UK
| | - Jens-Ola Ekström
- Department of Molecular Biology, Umeå University, 901 87, Umeå, Sweden
- Institute of Biosciences and Medical Technology, BioMediTech, University of Tampere, 33014, Tampere, Finland
| | - Pezhman Mohammadi
- HiLIFE-Institute of Biotechnology, University of Helsinki, Viikinkaari 9, P.O. Box 56, 00014, Helsinki, Finland
- VTT Technical Research Centre of Finland Ltd., 02044, Espoo, Finland
| | - Dan Hultmark
- Department of Molecular Biology, Umeå University, 901 87, Umeå, Sweden
- Institute of Biosciences and Medical Technology, BioMediTech, University of Tampere, 33014, Tampere, Finland
| | - Sarah J Butcher
- HiLIFE-Institute of Biotechnology, University of Helsinki, Viikinkaari 9, P.O. Box 56, 00014, Helsinki, Finland.
- Molecular and Integrative Biosciences Research Programme, Faculty of Biological and Environmental Sciences, University of Helsinki, Viikinkaari 9, P.O. Box 56, 00014, Helsinki, Finland.
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Lüthi MN, Vorburger C, Dennis AB. A Novel RNA Virus in the Parasitoid Wasp Lysiphlebus fabarum: Genomic Structure, Prevalence, and Transmission. Viruses 2020; 12:E59. [PMID: 31947801 PMCID: PMC7019493 DOI: 10.3390/v12010059] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2019] [Revised: 12/19/2019] [Accepted: 12/31/2019] [Indexed: 12/30/2022] Open
Abstract
We report on a novel RNA virus infecting the wasp Lysiphlebus fabarum, a parasitoid of aphids. This virus, tentatively named "Lysiphlebus fabarum virus" (LysV), was discovered in transcriptome sequences of wasps from an experimental evolution study in which the parasitoids were allowed to adapt to aphid hosts (Aphis fabae) with or without resistance-conferring endosymbionts. Based on phylogenetic analyses of the viral RNA-dependent RNA polymerase (RdRp), LysV belongs to the Iflaviridae family in the order of the Picornavirales, with the closest known relatives all being parasitoid wasp-infecting viruses. We developed an endpoint PCR and a more sensitive qPCR assay to screen for LysV in field samples and laboratory lines. These screens verified the occurrence of LysV in wild parasitoids and identified the likely wild-source population for lab infections in Western Switzerland. Three viral haplotypes could be distinguished in wild populations, of which two were found in the laboratory. Both vertical and horizontal transmission of LysV were demonstrated experimentally, and repeated sampling of laboratory populations suggests that the virus can form persistent infections without obvious symptoms in infected wasps.
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Affiliation(s)
- Martina N. Lüthi
- Institute of Integrative Biology, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland; (C.V.); (A.B.D.)
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
| | - Christoph Vorburger
- Institute of Integrative Biology, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland; (C.V.); (A.B.D.)
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
| | - Alice B. Dennis
- Institute of Integrative Biology, ETH Zürich, Universitätstrasse 16, 8092 Zürich, Switzerland; (C.V.); (A.B.D.)
- Eawag, Swiss Federal Institute of Aquatic Science and Technology, Überlandstrasse 133, 8600 Dübendorf, Switzerland
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8
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Yang X, Xu P, Yuan H, Graham RI, Wilson K, Wu K. Discovery and characterization of a novel picorna-like RNA virus in the cotton bollworm Helicoverpa armigera. J Invertebr Pathol 2019; 160:1-7. [DOI: 10.1016/j.jip.2018.11.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2018] [Revised: 11/02/2018] [Accepted: 11/14/2018] [Indexed: 11/26/2022]
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9
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Dennis AB, Patel V, Oliver KM, Vorburger C. Parasitoid gene expression changes after adaptation to symbiont-protected hosts. Evolution 2017; 71:2599-2617. [DOI: 10.1111/evo.13333] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2017] [Revised: 08/16/2017] [Accepted: 08/17/2017] [Indexed: 12/15/2022]
Affiliation(s)
- Alice B. Dennis
- Institute of Integrative Biology; ETH Zürich; Zürich Switzerland
- EAWAG; Swiss Federal Institute of Aquatic Science and Technology; Dübendorf Switzerland
- Current address: Unit of Evolutionary Biology and Systematic Zoology, Institute of Biochemistry and Biology; University of Potsdam; Potsdam Germany
| | - Vilas Patel
- Department of Entomology; University of Georgia; Athens Georgia 30602
| | - Kerry M. Oliver
- Department of Entomology; University of Georgia; Athens Georgia 30602
| | - Christoph Vorburger
- Institute of Integrative Biology; ETH Zürich; Zürich Switzerland
- EAWAG; Swiss Federal Institute of Aquatic Science and Technology; Dübendorf Switzerland
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10
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Wang F, Fang Q, Wang B, Yan Z, Hong J, Bao Y, Kuhn JH, Werren JH, Song Q, Ye G. A novel negative-stranded RNA virus mediates sex ratio in its parasitoid host. PLoS Pathog 2017; 13:e1006201. [PMID: 28278298 PMCID: PMC5344506 DOI: 10.1371/journal.ppat.1006201] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2016] [Accepted: 01/26/2017] [Indexed: 11/23/2022] Open
Abstract
Parasitoid wasps are important natural enemies of arthropod hosts in natural and agricultural ecosystems and are often associated with viruses or virion-like particles. Here, we report a novel negative-stranded RNA virus from a parasitoid wasp (Pteromalus puparum). The complete viral genome is 12,230 nucleotides in length, containing five non-overlapping, linearly arranged open reading frames. Phylogenetically, the virus clusters with and is a novel member of the mononegaviral family Nyamiviridae, here designated as Pteromalus puparum negative-strand RNA virus 1 (PpNSRV-1). PpNSRV-1 is present in various tissues and life stages of the parasitoid wasp, and is transmitted vertically through infected females and males. Virus infections in field populations of P. puparum wasps ranged from 16.7 to 37.5%, without linearly correlating with temperature. PpNSRV-1 increased adult longevity and impaired several fitness parameters of the wasp, but had no influence on successful parasitism. Strikingly, PpNSRV-1 mediated the offspring sex ratio by decreasing female offspring numbers. RNA interference knockdown of virus open reading frame I eliminated these PpNSRV-1-induced effects. Thus, we infer that PpNSRV-1 has complex effects on its insect host including sex ratio distortion towards males, as well as possible mutualistic benefits through increasing wasp longevity.
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Affiliation(s)
- Fei Wang
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Qi Fang
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Beibei Wang
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Zhichao Yan
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
| | - Jian Hong
- Analysis Center of Agrobiology and Environmental Sciences & Institute of Agrobiology and Environmental Sciences, Zhejiang University, Hangzhou, China
| | - Yiming Bao
- National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, Maryland, United States of America
| | - Jens H. Kuhn
- Integrated Research Facility at Fort Detrick (IRF-Frederick), Division of Clinical Research (DCR), National Institute of Allergy and Infectious Diseases (NIAID), National Institutes of Health (NIH), Fort Detrick, Frederick, Maryland, United States of America
| | - John H. Werren
- Department of Biology, University of Rochester, Rochester, New York, United States of America
| | - Qisheng Song
- Division of Plant Sciences, College of Agriculture, Food and Natural Resources, University of Missouri, Columbia, Missouri, United States of America
| | - Gongyin Ye
- State Key Laboratory of Rice Biology & Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China
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11
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Abbà S, Galetto L, Vallino M, Rossi M, Turina M, Sicard A, Marzachì C. Genome sequence, prevalence and quantification of the first iflavirus identified in a phytoplasma insect vector. Arch Virol 2016; 162:799-809. [PMID: 27888410 DOI: 10.1007/s00705-016-3158-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2016] [Accepted: 10/18/2016] [Indexed: 01/29/2023]
Abstract
The leafhopper Euscelidius variegatus is a natural vector of chrysanthemum yellows phytoplasma (CY) and an efficient vector of flavescence dorée phytoplasma (FD) under laboratory conditions. During a transcriptome sequencing (RNA-seq) project aimed at investigating the interactions between the insect and the two phytoplasmas, a 10,616-nucleotide-long contig with high sequence similarity to known picorna-like viruses was identified among the assembled insect transcripts. The discovery came totally unexpected, because insects from the laboratory colony did not show any evident symptom that could be related to the presence of a virus. The amino acid sequence, the shape and size of viral particles, and the results of phylogenetic analysis suggest that this virus, named Euscelidius variegatus virus 1 (EVV-1), can be considered a new member of a new species in the genus Iflavirus. EVV-1 was detected in all of the tested insects from the laboratory colony used for RNA-seq, both in phytoplasma-exposed and in non-exposed insects, but the viral load measured in FD-exposed samples was significantly lower than that in non-exposed insects. This result suggests the possible existence of an intriguing cross-talk among insects, endogenous bacteria, and viruses. The identification of two other E. variegatus laboratory colonies that were free of EVV-1 could represent the key to addressing some basic virological issues, e.g., viral replication and transmission mechanisms, and offer the opportunity to use infectious clones to express heterologous genes in the leafhopper and manipulate the expression of endogenous genes by promoting virus-induced gene silencing.
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Affiliation(s)
- Simona Abbà
- Institute for Sustainable Plant Protection, National Research Council of Italy, IPSP-CNR, Strada delle Cacce 73, 10135, Turin, Italy.
| | - Luciana Galetto
- Institute for Sustainable Plant Protection, National Research Council of Italy, IPSP-CNR, Strada delle Cacce 73, 10135, Turin, Italy
| | - Marta Vallino
- Institute for Sustainable Plant Protection, National Research Council of Italy, IPSP-CNR, Strada delle Cacce 73, 10135, Turin, Italy
| | - Marika Rossi
- Institute for Sustainable Plant Protection, National Research Council of Italy, IPSP-CNR, Strada delle Cacce 73, 10135, Turin, Italy
| | - Massimo Turina
- Institute for Sustainable Plant Protection, National Research Council of Italy, IPSP-CNR, Strada delle Cacce 73, 10135, Turin, Italy
| | - Anne Sicard
- Department of Environmental Science, Policy and Management, University of California, 130 Mulford Hall, Berkeley, CA, 94720, USA
| | - Cristina Marzachì
- Institute for Sustainable Plant Protection, National Research Council of Italy, IPSP-CNR, Strada delle Cacce 73, 10135, Turin, Italy
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12
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Dittmer J, van Opstal EJ, Shropshire JD, Bordenstein SR, Hurst GDD, Brucker RM. Disentangling a Holobiont - Recent Advances and Perspectives in Nasonia Wasps. Front Microbiol 2016; 7:1478. [PMID: 27721807 PMCID: PMC5033955 DOI: 10.3389/fmicb.2016.01478] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2016] [Accepted: 09/05/2016] [Indexed: 12/18/2022] Open
Abstract
The parasitoid wasp genus Nasonia (Hymenoptera: Chalcidoidea) is a well-established model organism for insect development, evolutionary genetics, speciation, and symbiosis. The host-microbiota assemblage which constitutes the Nasonia holobiont (a host together with all of its associated microbes) consists of viruses, two heritable bacterial symbionts and a bacterial community dominated in abundance by a few taxa in the gut. In the wild, all four Nasonia species are systematically infected with the obligate intracellular bacterium Wolbachia and can additionally be co-infected with Arsenophonus nasoniae. These two reproductive parasites have different transmission modes and host manipulations (cytoplasmic incompatibility vs. male-killing, respectively). Pioneering studies on Wolbachia in Nasonia demonstrated that closely related Nasonia species harbor multiple and mutually incompatible Wolbachia strains, resulting in strong symbiont-mediated reproductive barriers that evolved early in the speciation process. Moreover, research on host-symbiont interactions and speciation has recently broadened from its historical focus on heritable symbionts to the entire microbial community. In this context, each Nasonia species hosts a distinguishable community of gut bacteria that experiences a temporal succession during host development and members of this bacterial community cause strong hybrid lethality during larval development. In this review, we present the Nasonia species complex as a model system to experimentally investigate questions regarding: (i) the impact of different microbes, including (but not limited to) heritable endosymbionts, on the extended phenotype of the holobiont, (ii) the establishment and regulation of a species-specific microbiota, (iii) the role of the microbiota in speciation, and (iv) the resilience and adaptability of the microbiota in wild populations subjected to different environmental pressures. We discuss the potential for easy microbiota manipulations in Nasonia as a promising experimental approach to address these fundamental aspects.
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Affiliation(s)
- Jessica Dittmer
- Rowland Institute at Harvard, Harvard University, Cambridge MA, USA
| | | | - J Dylan Shropshire
- Department of Biological Sciences, Vanderbilt University, Nashville TN, USA
| | - Seth R Bordenstein
- Department of Biological Sciences, Vanderbilt University, NashvilleTN, USA; Department of Pathology, Microbiology, and Immunology, Vanderbilt University, NashvilleTN, USA
| | - Gregory D D Hurst
- Institute of Integrative Biology, University of Liverpool Liverpool, UK
| | - Robert M Brucker
- Rowland Institute at Harvard, Harvard University, Cambridge MA, USA
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13
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Sadanandan SA, Ekström JO, Jonna VR, Hofer A, Hultmark D. VP3 is crucial for the stability of Nora virus virions. Virus Res 2016; 223:20-7. [PMID: 27329665 DOI: 10.1016/j.virusres.2016.06.011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2016] [Revised: 06/15/2016] [Accepted: 06/17/2016] [Indexed: 10/21/2022]
Abstract
Nora virus is an enteric virus that causes persistent, non-pathological infection in Drosophila melanogaster. It replicates in the fly gut and is transmitted via the fecal-oral route. Nora virus has a single-stranded positive-sense RNA genome, which is translated in four open reading frames. Reading frame three encodes the VP3 protein, the structure and function of which we have investigated in this work. We have shown that VP3 is a trimer that has an α-helical secondary structure, with a functionally important coiled-coil domain. In order to identify the role of VP3 in the Nora virus life cycle, we constructed VP3-mutants using the cDNA clone of the virus. Our results show that VP3 does not have a role in the actual assembly of the virus particles, but virions that lack VP3 or harbor VP3 with a disrupted coiled coil domain are incapable of transmission via the fecal-oral route. Removing the region downstream of the putative coiled coil appears to have an effect on the fitness of the virus but does not hamper its replication or transmission. We also found that the VP3 protein and particularly the coiled coil domain are crucial for the stability of Nora virus virions when exposed to heat or proteases. Hence, we propose that VP3 is imperative to Nora virus virions as it confers stability to the viral capsid.
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Affiliation(s)
| | - Jens-Ola Ekström
- Department of Molecular Biology, Umeå University, SE-901 87 Umeå, Sweden; Institute of Biomedical Technology, University of Tampere, FI-33520 Tampere, Finland
| | - Venkateswara Rao Jonna
- Department of Medical Biochemistry and Biophysics, Umeå University, SE-901 87 Umeå, Sweden
| | - Anders Hofer
- Department of Medical Biochemistry and Biophysics, Umeå University, SE-901 87 Umeå, Sweden
| | - Dan Hultmark
- Department of Molecular Biology, Umeå University, SE-901 87 Umeå, Sweden; Institute of Biomedical Technology, University of Tampere, FI-33520 Tampere, Finland.
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14
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Sim AD, Wheeler D. The venom gland transcriptome of the parasitoid wasp Nasonia vitripennis highlights the importance of novel genes in venom function. BMC Genomics 2016; 17:571. [PMID: 27503142 PMCID: PMC4977848 DOI: 10.1186/s12864-016-2924-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2016] [Accepted: 07/07/2016] [Indexed: 11/10/2022] Open
Abstract
Background Prior to egg laying the parasitoid wasp Nasonia vitripennis envenomates its pupal host with a complex mixture of venom peptides. This venom induces several dramatic changes in the host, including developmental arrest, immunosuppression, and altered metabolism. The diverse and potent bioactivity of N. vitripennis venom provides opportunities for the development of novel acting pharmaceuticals based on these molecules. However, currently very little is known about the specific functions of individual venom peptides or what mechanisms underlie the hosts response to envenomation. Many of the venom peptides also lack bioinformatically derived annotations because no homologs can be identified in the sequences databases. The RNA interference system of N. vitripennis provides a method for functional characterisation of venom protein encoding genes, however working with the current list of 79 candidates represents a daunting task. For this reason we were interested in determining the expression levels of venom encoding genes in the venom gland, as this information could be used to rank candidates for further study. To do this we carried out deep transcriptome sequencing of the venom gland and ovary tissue and used RNA-seq to rank the venom protein encoding genes by expression level. The generation of a specific venom gland transcriptome dataset also provides further opportunities to investigate novel features of this specialised organ. Results RNA-seq revealed that the highest expressed venom encoding gene in the venom gland was ‘Venom protein Y’. The highest expressed annotated gene in this tissue was serine protease Nasvi2EG007167, which has previously been implicated in the apoptotic activity of N. vitripennis venom. As expected the RNA-seq confirmed that venom encoding genes are almost exclusively expressed in the venom gland relative to the neighbouring ovary tissue. Novel genes appear to perform key roles in N. vitripennis venom function, with over half of the 15 highest expressed venom encoding loci lacking bioinformatic annotations. The high throughput sequencing data also provided evidence for the existence of an additional 472 previously undescribed transcribed regions in the N. vitripennis genome. Finally, metatranscriptomic analysis of the venom gland transcriptome finds little evidence for the role of Wolbachia in the venom system. Conclusions The expression level information provided here for the N. vitripennis venom protein encoding genes represents a valuable dataset that can be used by the research community to rank candidates for further functional characterisation. These candidates represent bioactive peptides valuable in the development of new pharmaceuticals. Electronic supplementary material The online version of this article (doi:10.1186/s12864-016-2924-7) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Andre D Sim
- Institute of Fundamental Sciences, Massey University, Palmerston North, 4442, New Zealand
| | - David Wheeler
- Institute of Fundamental Sciences, Massey University, Palmerston North, 4442, New Zealand.
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15
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Jakubowska AK, Murillo R, Carballo A, Williams T, van Lent JWM, Caballero P, Herrero S. Iflavirus increases its infectivity and physical stability in association with baculovirus. PeerJ 2016; 4:e1687. [PMID: 26966651 PMCID: PMC4782719 DOI: 10.7717/peerj.1687] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2015] [Accepted: 01/22/2016] [Indexed: 11/20/2022] Open
Abstract
Virus transmission and the prevalence of infection depend on multiple factors, including the interaction with other viral pathogens infecting the same host. In this study, active replication of an iflavirus, Spodoptera exigua iflavirus 1 (order Picornavirales) was observed in the offspring of insects that survived following inoculation with a pathogenic baculovirus, Spodoptera exigua multiple nucleopolyhedrovirus. Tracking the origin of the iflavirus suggested the association of this virus with the occlusion bodies of the baculovirus. Here we investigated the effect of this association on the stability and infectivity of both viruses. A reduction in baculovirus pathogenicity, without affecting its infectivity and productivity, was observed when associated with the iflavirus. In contrast, viral association increased the infectivity of the iflavirus and its resistance to ultraviolet radiation and high temperature, two of the main factors affecting virus stability in the field. In addition, electron microscopy analysis revealed the presence of particles resembling iflavirus virions inside the occlusion bodies of the baculovirus, suggesting the possible co-occlusion of both viruses. Results reported here are indicative of facultative phoresis of a virus and suggest that virus–virus interactions may be more common than currently recognized, and may be influential in the ecology of baculovirus and host populations and in consequence in the use of baculoviruses as biological insecticides.
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Affiliation(s)
- Agata K Jakubowska
- Department of Genetics, Universitat de València, Burjassot, Valencia, Spain; Estructura de Recerca Interdisciplinar en Biotecnologia i Biomedicina (ERI-BIOTECMED), Universitat de València, Burjassot, Valencia, Spain
| | - Rosa Murillo
- Instituto de Agrobiotecnología, Universidad Pública de Navarra, Pamplona, Spain; Departamento de Producción Agraria, Universidad Pública de Navarra, Pamplona, Navarra, Spain
| | - Arkaitz Carballo
- Instituto de Agrobiotecnología, Universidad Pública de Navarra, Pamplona, Spain; Departamento de Producción Agraria, Universidad Pública de Navarra, Pamplona, Navarra, Spain
| | | | - Jan W M van Lent
- Laboratory of Virology, Dept. of Plant Sciences, Wageningen Agricultural University , Wageningen , Netherlands
| | - Primitivo Caballero
- Instituto de Agrobiotecnología, Universidad Pública de Navarra, Pamplona, Spain; Departamento de Producción Agraria, Universidad Pública de Navarra, Pamplona, Navarra, Spain
| | - Salvador Herrero
- Department of Genetics, Universitat de València, Burjassot, Valencia, Spain; Estructura de Recerca Interdisciplinar en Biotecnologia i Biomedicina (ERI-BIOTECMED), Universitat de València, Burjassot, Valencia, Spain
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16
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Martinez J, Lepetit D, Ravallec M, Fleury F, Varaldi J. Additional heritable virus in the parasitic wasp Leptopilina boulardi: prevalence, transmission and phenotypic effects. J Gen Virol 2016; 97:523-535. [DOI: 10.1099/jgv.0.000360] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Affiliation(s)
- Julien Martinez
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Lyon, France
| | - David Lepetit
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Lyon, France
| | - Marc Ravallec
- Unité BiVi (Biologie Intégrative et Virologie des Insectes), Université Montpellier II-INRA 1231, France
| | - Frédéric Fleury
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Lyon, France
| | - Julien Varaldi
- Université Lyon 1, CNRS, UMR 5558, Laboratoire de Biométrie et Biologie Evolutive, Lyon, France
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17
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Venom gland components of the ectoparasitoid wasp, Anisopteromalus calandrae. JOURNAL OF VENOM RESEARCH 2015; 6:19-37. [PMID: 26998218 PMCID: PMC4776022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/09/2015] [Revised: 12/10/2015] [Accepted: 12/23/2015] [Indexed: 11/25/2022]
Abstract
The wasp Anisopteromalus calandrae is a small ectoparasitoid that attacks stored product pest beetle larvae that develop inside grain kernels, and is thus a potential insect control tool. The components of A. calandrae venom have not been studied, but venom from other organisms contains proteins with potential applications, such as pest management tools and treatments for human diseases. We dissected female A. calandrae and collected venom and associated glands. Using high throughput sequencing, a venom gland transcriptome was assembled that contained 45,432 contigs, 25,726 of which had BLASTx hits. The majority of hits were to Nasonia vitripennis, an ectoparasitoid from the same taxonomic family, as well as other bees, wasps, and ants. Gene ontology grouped sequences into eleven molecular functions, among which binding and catalytic activity had the most representatives. In this study, we highlighted the most abundant sequences, including those that are likely the functional components of the venom. Specifically, we focused on genes encoding proteins potentially involved in host developmental arrest, disrupting the host immune system, host paralysis, and transcripts that support these functions. Our report is the first to characterize components of the A. calandrae venom gland that may be useful as control tools for insect pests and other applications.
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18
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Nouri S, Salem N, Nigg JC, Falk BW. Diverse Array of New Viral Sequences Identified in Worldwide Populations of the Asian Citrus Psyllid (Diaphorina citri) Using Viral Metagenomics. J Virol 2015; 90:2434-45. [PMID: 26676774 PMCID: PMC4810699 DOI: 10.1128/jvi.02793-15] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2015] [Accepted: 12/08/2015] [Indexed: 12/26/2022] Open
Abstract
UNLABELLED The Asian citrus psyllid, Diaphorina citri, is the natural vector of the causal agent of Huanglongbing (HLB), or citrus greening disease. Together; HLB and D. citri represent a major threat to world citrus production. As there is no cure for HLB, insect vector management is considered one strategy to help control the disease, and D. citri viruses might be useful. In this study, we used a metagenomic approach to analyze viral sequences associated with the global population of D. citri. By sequencing small RNAs and the transcriptome coupled with bioinformatics analysis, we showed that the virus-like sequences of D. citri are diverse. We identified novel viral sequences belonging to the picornavirus superfamily, the Reoviridae, Parvoviridae, and Bunyaviridae families, and an unclassified positive-sense single-stranded RNA virus. Moreover, a Wolbachia prophage-related sequence was identified. This is the first comprehensive survey to assess the viral community from worldwide populations of an agricultural insect pest. Our results provide valuable information on new putative viruses, some of which may have the potential to be used as biocontrol agents. IMPORTANCE Insects have the most species of all animals, and are hosts to, and vectors of, a great variety of known and unknown viruses. Some of these most likely have the potential to be important fundamental and/or practical resources. In this study, we used high-throughput next-generation sequencing (NGS) technology and bioinformatics analysis to identify putative viruses associated with Diaphorina citri, the Asian citrus psyllid. D. citri is the vector of the bacterium causing Huanglongbing (HLB), currently the most serious threat to citrus worldwide. Here, we report several novel viral sequences associated with D. citri.
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Affiliation(s)
- Shahideh Nouri
- Department of Plant Pathology, University of California, Davis, California, USA
| | - Nidá Salem
- Department of Plant Protection, The University of Jordan, Amman, Jordan
| | - Jared C Nigg
- Department of Plant Pathology, University of California, Davis, California, USA
| | - Bryce W Falk
- Department of Plant Pathology, University of California, Davis, California, USA
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19
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Dheilly NM, Maure F, Ravallec M, Galinier R, Doyon J, Duval D, Leger L, Volkoff AN, Missé D, Nidelet S, Demolombe V, Brodeur J, Gourbal B, Thomas F, Mitta G. Who is the puppet master? Replication of a parasitic wasp-associated virus correlates with host behaviour manipulation. Proc Biol Sci 2015; 282:20142773. [PMID: 25673681 DOI: 10.1098/rspb.2014.2773] [Citation(s) in RCA: 68] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
Many parasites modify their host behaviour to improve their own transmission and survival, but the proximate mechanisms remain poorly understood. An original model consists of the parasitoid Dinocampus coccinellae and its coccinellid host, Coleomegilla maculata; during the behaviour manipulation, the parasitoid is not in contact with its host anymore. We report herein the discovery and characterization of a new RNA virus of the parasitoid (D. coccinellae paralysis virus, DcPV). Using a combination of RT-qPCR and transmission electron microscopy, we demonstrate that DcPV is stored in the oviduct of parasitoid females, replicates in parasitoid larvae and is transmitted to the host during larval development. Next, DcPV replication in the host's nervous tissue induces a severe neuropathy and antiviral immune response that correlate with the paralytic symptoms characterizing the behaviour manipulation. Remarkably, virus clearance correlates with recovery of normal coccinellid behaviour. These results provide evidence that changes in ladybeetle behaviour most likely result from DcPV replication in the cerebral ganglia rather than by manipulation by the parasitoid. This offers stimulating prospects for research on parasitic manipulation by suggesting for the first time that behaviour manipulation could be symbiont-mediated.
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Affiliation(s)
- Nolwenn M Dheilly
- UMR 5244, Ecologie et Evolution des Interactions (2EI), CNRS, Université de Perpignan, Perpignan 66860, France MIVEGEC (UMR CNRS/IRD/UM1/UM2 5290), 911 Avenue Agropolis, BP 64501, Montpellier Cedex 5 34394, France
| | - Fanny Maure
- MIVEGEC (UMR CNRS/IRD/UM1/UM2 5290), 911 Avenue Agropolis, BP 64501, Montpellier Cedex 5 34394, France Département de Sciences Biologiques, Institut de Recherche en Biologie Végétale, Université de Montréal, 4101 rue Sherbrooke est, Montréal, Québec, Canada H1X 2B2
| | - Marc Ravallec
- INRA (UMR 1333), 'Insect-Microorganisms Diversity, Genomes and Interactions', Université de Montpellier 2, Place Eugène Bataillon, CC101, Montpellier Cedex 34095, France
| | - Richard Galinier
- UMR 5244, Ecologie et Evolution des Interactions (2EI), CNRS, Université de Perpignan, Perpignan 66860, France
| | - Josée Doyon
- Département de Sciences Biologiques, Institut de Recherche en Biologie Végétale, Université de Montréal, 4101 rue Sherbrooke est, Montréal, Québec, Canada H1X 2B2
| | - David Duval
- UMR 5244, Ecologie et Evolution des Interactions (2EI), CNRS, Université de Perpignan, Perpignan 66860, France
| | - Lucas Leger
- MIVEGEC (UMR CNRS/IRD/UM1/UM2 5290), 911 Avenue Agropolis, BP 64501, Montpellier Cedex 5 34394, France
| | - Anne-Nathalie Volkoff
- INRA (UMR 1333), 'Insect-Microorganisms Diversity, Genomes and Interactions', Université de Montpellier 2, Place Eugène Bataillon, CC101, Montpellier Cedex 34095, France
| | - Dorothée Missé
- MIVEGEC (UMR CNRS/IRD/UM1/UM2 5290), 911 Avenue Agropolis, BP 64501, Montpellier Cedex 5 34394, France
| | - Sabine Nidelet
- Montpellier Genomics and Bioinformatics Facility, MGX-Montpellier GenomiX, Montpellier 34396, France
| | - Vincent Demolombe
- Montpellier Genomics and Bioinformatics Facility, MGX-Montpellier GenomiX, Montpellier 34396, France
| | - Jacques Brodeur
- Département de Sciences Biologiques, Institut de Recherche en Biologie Végétale, Université de Montréal, 4101 rue Sherbrooke est, Montréal, Québec, Canada H1X 2B2
| | - Benjamin Gourbal
- UMR 5244, Ecologie et Evolution des Interactions (2EI), CNRS, Université de Perpignan, Perpignan 66860, France
| | - Frédéric Thomas
- MIVEGEC (UMR CNRS/IRD/UM1/UM2 5290), 911 Avenue Agropolis, BP 64501, Montpellier Cedex 5 34394, France
| | - Guillaume Mitta
- UMR 5244, Ecologie et Evolution des Interactions (2EI), CNRS, Université de Perpignan, Perpignan 66860, France
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20
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Cory JS. Insect virus transmission: different routes to persistence. CURRENT OPINION IN INSECT SCIENCE 2015; 8:130-135. [PMID: 32846660 DOI: 10.1016/j.cois.2015.01.007] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2014] [Revised: 01/15/2015] [Accepted: 01/15/2015] [Indexed: 05/05/2023]
Abstract
Transmission is a fundamental process in disease ecology; however, the factors that modulate transmission and the dynamical and evolutionary consequences of these factors in host populations are difficult to study in natural settings. Much of our current knowledge comes from a limited number of virus groups and few ecological studies. Alternatively, progress has been made in the detection of new viruses and in probing the molecular basis of behavioural manipulation of hosts that might influence virus transmission. An expanding theoretical framework provides guidelines on the conditions under which particular transmission strategies might evolve, and their dynamical consequences, but empirical tests are lacking.
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Affiliation(s)
- Jenny S Cory
- Department of Biological Sciences, Simon Fraser University, 8888 University Drive, Burnaby, BC, Canada V5A 1S6.
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21
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Carrillo-Tripp J, Krueger EN, Harrison RL, Toth AL, Miller WA, Bonning BC. Lymantria dispar iflavirus 1 (LdIV1), a new model to study iflaviral persistence in lepidopterans. J Gen Virol 2014; 95:2285-2296. [DOI: 10.1099/vir.0.067710-0] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
The cell line IPLB-LD-652Y, derived from the gypsy moth (Lymantria dispar L.), is routinely used to study interactions between viruses and insect hosts. Here we report the full genome sequence and biological characteristics of a small RNA virus, designated Lymantria dispar iflavirus 1 (LdIV1), that was discovered to persistently infect IPLB-LD-652Y. LdIV1 belongs to the genus Iflavirus. LdIV1 formed icosahedral particles of approx. 30 nm in diameter and contained a 10 044 nt polyadenylated, positive-sense RNA genome encoding a predicted polyprotein of 2980 aa. LdIV1 was induced by a viral suppressor of RNA silencing, suggesting that acute infection is restricted by RNA interference (RNAi). We detected LdIV1 in all tested tissues of gypsy-moth larvae and adults, but the virus was absent from other L. dispar-derived cell lines. We confirmed LdIV1 infectivity in two of these cell lines (IPLB-LD-652 and IPLB-LdFB). Our results provide a novel system to explore persistent infections in lepidopterans and a new model for the study of iflaviruses, a rapidly expanding group of viruses, many of which covertly infect their hosts.
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Affiliation(s)
- Jimena Carrillo-Tripp
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA
| | - Elizabeth N. Krueger
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA
| | - Robert L. Harrison
- Invasive Insect Biocontrol and Behavior Laboratory, USDA Agricultural Research Service, Beltsville, MD 20705, USA
| | - Amy L. Toth
- Department of Entomology, Iowa State University, Ames, IA 50011, USA
| | - W. Allen Miller
- Department of Plant Pathology and Microbiology, Iowa State University, Ames, IA 50011, USA
| | - Bryony C. Bonning
- Department of Entomology, Iowa State University, Ames, IA 50011, USA
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22
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van Mierlo JT, Overheul GJ, Obadia B, van Cleef KWR, Webster CL, Saleh MC, Obbard DJ, van Rij RP. Novel Drosophila viruses encode host-specific suppressors of RNAi. PLoS Pathog 2014; 10:e1004256. [PMID: 25032815 PMCID: PMC4102588 DOI: 10.1371/journal.ppat.1004256] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2014] [Accepted: 06/03/2014] [Indexed: 12/24/2022] Open
Abstract
The ongoing conflict between viruses and their hosts can drive the co-evolution between host immune genes and viral suppressors of immunity. It has been suggested that an evolutionary ‘arms race’ may occur between rapidly evolving components of the antiviral RNAi pathway of Drosophila and viral genes that antagonize it. We have recently shown that viral protein 1 (VP1) of Drosophila melanogaster Nora virus (DmelNV) suppresses Argonaute-2 (AGO2)-mediated target RNA cleavage (slicer activity) to antagonize antiviral RNAi. Here we show that viral AGO2 antagonists of divergent Nora-like viruses can have host specific activities. We have identified novel Nora-like viruses in wild-caught populations of D. immigrans (DimmNV) and D. subobscura (DsubNV) that are 36% and 26% divergent from DmelNV at the amino acid level. We show that DimmNV and DsubNV VP1 are unable to suppress RNAi in D. melanogaster S2 cells, whereas DmelNV VP1 potently suppresses RNAi in this host species. Moreover, we show that the RNAi suppressor activity of DimmNV VP1 is restricted to its natural host species, D. immigrans. Specifically, we find that DimmNV VP1 interacts with D. immigrans AGO2, but not with D. melanogaster AGO2, and that it suppresses slicer activity in embryo lysates from D. immigrans, but not in lysates from D. melanogaster. This species-specific interaction is reflected in the ability of DimmNV VP1 to enhance RNA production by a recombinant Sindbis virus in a host-specific manner. Our results emphasize the importance of analyzing viral RNAi suppressor activity in the relevant host species. We suggest that rapid co-evolution between RNA viruses and their hosts may result in host species-specific activities of RNAi suppressor proteins, and therefore that viral RNAi suppressors could be host-specificity factors. Viruses and their hosts can engage in an evolutionary arms race. Viruses may select for hosts with more effective immune responses, whereas the immune response of the host may select for viruses that evade the immune system. These viral counter-defenses may in turn drive adaptations in host immune genes. A potential outcome of this perpetual cycle is that the interaction between virus and host becomes more specific. In insects, the host antiviral RNAi machinery exerts strong evolutionary pressure that has led to the evolution of viral proteins that can antagonize the RNAi response. We have identified novel viruses that infect different fruit fly species and we show that the RNAi suppressor proteins of these viruses can be specific to their host. Furthermore, we show that these proteins can enhance virus replication in a host-specific manner. These results are in line with the hypothesis that virus-host co-evolution shapes the genomes of both virus and host. Moreover, our results suggest that RNAi suppressor proteins have the potential to determine host specificity of viruses.
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Affiliation(s)
- Joël T. van Mierlo
- Department of Medical Microbiology, Radboud University Nijmegen Medical Centre, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands
| | - Gijs J. Overheul
- Department of Medical Microbiology, Radboud University Nijmegen Medical Centre, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands
| | - Benjamin Obadia
- Institut Pasteur, Viruses and RNA interference Unit and Centre National de la Recherche Scientifique, UMR 3569, Paris, France
| | - Koen W. R. van Cleef
- Department of Medical Microbiology, Radboud University Nijmegen Medical Centre, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands
| | - Claire L. Webster
- Institute of Evolutionary Biology and Centre for Immunity, Infection and Evolution, University of Edinburgh, Edinburgh, United Kingdom
| | - Maria-Carla Saleh
- Institut Pasteur, Viruses and RNA interference Unit and Centre National de la Recherche Scientifique, UMR 3569, Paris, France
| | - Darren J. Obbard
- Institute of Evolutionary Biology and Centre for Immunity, Infection and Evolution, University of Edinburgh, Edinburgh, United Kingdom
- * E-mail: (DJO); (RPvR)
| | - Ronald P. van Rij
- Department of Medical Microbiology, Radboud University Nijmegen Medical Centre, Radboud Institute for Molecular Life Sciences, Nijmegen, The Netherlands
- * E-mail: (DJO); (RPvR)
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23
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Jakubowska AK, D'Angiolo M, González-Martínez RM, Millán-Leiva A, Carballo A, Murillo R, Caballero P, Herrero S. Simultaneous occurrence of covert infections with small RNA viruses in the lepidopteran Spodoptera exigua. J Invertebr Pathol 2014; 121:56-63. [PMID: 24997384 DOI: 10.1016/j.jip.2014.06.009] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2014] [Revised: 06/12/2014] [Accepted: 06/24/2014] [Indexed: 12/21/2022]
Abstract
Viral covert infections in invertebrates have been traditionally attributed to sublethal infections that were not able to establish an acute infection. Recent studies are revealing that, although true for some viruses, other viruses may follow the strategy of establishing covert or persistent infections without producing the death of the host. Recently, and due to the revolution in the sequencing technologies, a large number of viruses causing covert infections in all type of hosts have been identified. The beet armyworm, Spodoptera exigua (Lepidoptera: Noctuidae) is a worldwide pest that causes significant losses to agricultural and ornamental plant industries. In a previous project we used NGS to obtain a comprehensive transcriptome of the larval stage, revealing the presence of an important number of unigenes belonging to novel RNA viruses, most of them from the order Picornavirales. In order to characterize S. exigua viral complex, in this work we have completed the genomic sequences of two picorna-like viruses, and compared them to a SeIV1, a member of Iflaviridae previously described by our group. We performed additional studies to determine virus morphology, horizontal transmission, tissue and life stage distribution and abundance in the hosts. We discuss the role of virus persistent infections on insect populations.
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Affiliation(s)
- Agata K Jakubowska
- Department of Genetics, Universitat de València, Dr. Moliner 50, 46100 Burjassot, Spain.
| | - Melania D'Angiolo
- Department of Genetics, Universitat de València, Dr. Moliner 50, 46100 Burjassot, Spain
| | | | - Anabel Millán-Leiva
- Department of Genetics, Universitat de València, Dr. Moliner 50, 46100 Burjassot, Spain
| | - Arkaitz Carballo
- Instituto de Agrobiotecnología, CSIC-UPNa-Gobierno de Navarra, 31192 Mutilva Baja, Navarra, Spain
| | - Rosa Murillo
- Instituto de Agrobiotecnología, CSIC-UPNa-Gobierno de Navarra, 31192 Mutilva Baja, Navarra, Spain
| | - Primitivo Caballero
- Instituto de Agrobiotecnología, CSIC-UPNa-Gobierno de Navarra, 31192 Mutilva Baja, Navarra, Spain
| | - Salvador Herrero
- Department of Genetics, Universitat de València, Dr. Moliner 50, 46100 Burjassot, Spain
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24
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Xu J, Cherry S. Viruses and antiviral immunity in Drosophila. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 2014; 42:67-84. [PMID: 23680639 PMCID: PMC3826445 DOI: 10.1016/j.dci.2013.05.002] [Citation(s) in RCA: 96] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2013] [Revised: 04/26/2013] [Accepted: 05/02/2013] [Indexed: 05/10/2023]
Abstract
Viral pathogens present many challenges to organisms, driving the evolution of a myriad of antiviral strategies to combat infections. A wide variety of viruses infect invertebrates, including both natural pathogens that are insect-restricted, and viruses that are transmitted to vertebrates. Studies using the powerful tools in the model organism Drosophila have expanded our understanding of antiviral defenses against diverse viruses. In this review, we will cover three major areas. First, we will describe the tools used to study viruses in Drosophila. Second, we will survey the major viruses that have been studied in Drosophila. And lastly, we will discuss the well-characterized mechanisms that are active against these diverse pathogens, focusing on non-RNAi mediated antiviral mechanisms. Antiviral RNAi is discussed in another paper in this issue.
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Affiliation(s)
- Jie Xu
- Department of Microbiology, University of Pennsylvania School of Medicine, Philadelphia, PA 19104, USA
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25
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Pascual L, Jakubowska AK, Blanca JM, Cañizares J, Ferré J, Gloeckner G, Vogel H, Herrero S. The transcriptome of Spodoptera exigua larvae exposed to different types of microbes. INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2012; 42:557-570. [PMID: 22564783 DOI: 10.1016/j.ibmb.2012.04.003] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2012] [Revised: 04/04/2012] [Accepted: 04/07/2012] [Indexed: 05/31/2023]
Abstract
We have obtained and characterized the transcriptome of Spodoptera exigua larvae with special emphasis on pathogen-induced genes. In order to obtain a highly representative transcriptome, we have pooled RNA from diverse insect colonies, conditions and tissues. Sequenced cDNA included samples from 3 geographically different colonies. Enrichment of RNA from pathogen-related genes was accomplished by exposing larvae to different pathogenic and non-pathogenic microbial agents such as the bacteria Bacillus thuringiensis, Micrococcus luteus, and Escherichia coli, the yeast Saccharomyces cerevisiae, and the S. exigua nucleopolyhedrovirus (SeMNPV). In addition, to avoid the loss of tissue-specific genes we included cDNA from the midgut, fat body, hemocytes and integument derived from pathogen exposed insects. RNA obtained from the different types of samples was pooled, normalized and sequenced. Analysis of the sequences obtained using the Roche 454 FLX and Sanger methods has allowed the generation of the largest public set of ESTs from S. exigua, including a large group of immune genes, and the identification of an important number of SSR (simple sequence repeats) and SNVs (single nucleotide variants: SNPs and INDELs) with potential use as genetic markers. Moreover, data mining has allowed the discovery of novel RNA viruses with potential influence in the insect population dynamics and the larval interactions with the microbial pesticides that are currently in use for the biological control of this pest.
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Affiliation(s)
- Laura Pascual
- Instituto de Conservación y Mejora de la Agrodiversidad Valenciana (COMAV), Universidad Politécnica de Valencia, Camino de Vera s/n, Valencia, Spain
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26
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Torres L, Almazán C, Ayllón N, Galindo RC, Rosario-Cruz R, Quiroz-Romero H, Gortazar C, de la Fuente J. Identification of microorganisms in partially fed female horn flies, Haematobia irritans. Parasitol Res 2012; 111:1391-5. [DOI: 10.1007/s00436-012-2877-y] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2011] [Accepted: 02/22/2012] [Indexed: 11/30/2022]
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Abstract
This chapter describes the different RNA viruses that have been detected at least once in parasitoid wasps. It could be wondered whether the other families of parasitoids are really absent, or if this is due to the fact that inadequate techniques were used to detect viruses. In fact, several different methods have been used: TEM of the venom glands of females, extraction of nucleic acids, followed by DNAse digestion to eliminate the polydnavirus or ascovirus genome, RT-PCR with primers specific of RdRp or data mining in an EST library. To resolve this problem of detecting RNA viruses, a systematic search for viruses in parasitoids should be carried out using a combination of these different methods. Only a few hymenopteran species are known to be infected by RNA viruses, although thousands of species are known to carry polydnaviruses or VLPs. This could suggest that the presence of polydnaviruses or VLPs may block infections with other viruses.
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28
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Millán-Leiva A, Jakubowska AK, Ferré J, Herrero S. Genome sequence of SeIV-1, a novel virus from the Iflaviridae family infective to Spodoptera exigua. J Invertebr Pathol 2011; 109:127-33. [PMID: 22041201 DOI: 10.1016/j.jip.2011.10.009] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2011] [Revised: 10/11/2011] [Accepted: 10/17/2011] [Indexed: 11/29/2022]
Abstract
Analysis of the transcriptome of Spodoptera exigua larvae revealed the presence of several ESTs with homology to virus of the order Picornavirales and with the highest similarity to Infectious flacherie virus (Iflaviridae) that infects Bombyx mori larvae. Iflaviridae is a recently defined family of insect-infecting viruses that consist of positive single strand RNA genomes translated into a single polyprotein of around 3000 amino acids long. Using the sequence information derived from the obtained ESTs, we have completed the genomic sequence of this virus. The novel S. exigua iflavirus (SeIV-1) has a genome of 10.3 kb and codes for a 3222 aa polyprotein. Expression analysis has revealed the presence of the virus in all tissues tested and insect stages, being more abundant in the midgut of the larvae. High infectivity of this virus against S. exigua has been demonstrated after observing the presence of this virus in different colonies that were reared in the same chamber with the virus-infected colony, despite no evidence of pathological effects. Further study of viral covert infections of SeIV-1 could lead to a better understanding of its pathological effect as well as any possible interaction with other microbial pathogens used for the control of this pest.
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Affiliation(s)
- Anabel Millán-Leiva
- Department of Genetics, Universitat de València, Dr. Moliner 50, 46100 Burjassot, Spain
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29
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Liu S, Vijayendran D, Bonning BC. Next generation sequencing technologies for insect virus discovery. Viruses 2011; 3:1849-69. [PMID: 22069519 PMCID: PMC3205385 DOI: 10.3390/v3101849] [Citation(s) in RCA: 89] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2011] [Revised: 09/15/2011] [Accepted: 09/19/2011] [Indexed: 12/21/2022] Open
Abstract
Insects are commonly infected with multiple viruses including those that cause sublethal, asymptomatic, and latent infections. Traditional methods for virus isolation typically lack the sensitivity required for detection of such viruses that are present at low abundance. In this respect, next generation sequencing technologies have revolutionized methods for the discovery and identification of new viruses from insects. Here we review both traditional and modern methods for virus discovery, and outline analysis of transcriptome and small RNA data for identification of viral sequences. We will introduce methods for de novo assembly of viral sequences, identification of potential viral sequences from BLAST data, and bioinformatics for generating full-length or near full-length viral genome sequences. We will also discuss implications of the ubiquity of viruses in insects and in insect cell lines. All of the methods described in this article can also apply to the discovery of viruses in other organisms.
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Affiliation(s)
- Sijun Liu
- Department of Entomology, Iowa State University, Ames, IA 50011, USA.
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30
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Brown S. The Nasonia genome sequence: finding gems in the jewel (wasp) box. INSECT MOLECULAR BIOLOGY 2010; 19 Suppl 1:v-vii. [PMID: 20167012 DOI: 10.1111/j.1365-2583.2009.00989.x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/28/2023]
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