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Blázquez-Castro A, Fernández-Piqueras J, Santos J. Genetic Material Manipulation and Modification by Optical Trapping and Nanosurgery-A Perspective. Front Bioeng Biotechnol 2020; 8:580937. [PMID: 33072730 PMCID: PMC7530750 DOI: 10.3389/fbioe.2020.580937] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2020] [Accepted: 09/01/2020] [Indexed: 11/13/2022] Open
Abstract
Light can be employed as a tool to alter and manipulate matter in many ways. An example has been the implementation of optical trapping, the so called optical tweezers, in which light can hold and move small objects with 3D control. Of interest for the Life Sciences and Biotechnology is the fact that biological objects in the size range from tens of nanometers to hundreds of microns can be precisely manipulated through this technology. In particular, it has been shown possible to optically trap and move genetic material (DNA and chromatin) using optical tweezers. Also, these biological entities can be severed, rearranged and reconstructed by the combined use of laser scissors and optical tweezers. In this review, the background, current state and future possibilities of optical tweezers and laser scissors to manipulate, rearrange and alter genetic material (DNA, chromatin and chromosomes) will be presented. Sources of undesirable effects by the optical procedure and measures to avoid them will be discussed. In addition, first tentative approaches at cellular-level genetic and organelle surgery, in which genetic material or DNA-carrying organelles are extracted out or introduced into cells, will be presented.
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Affiliation(s)
- Alfonso Blázquez-Castro
- Department of Biology, Faculty of Sciences, Autonomous University of Madrid, Madrid, Spain.,Genome Dynamics and Function Program, Genome Decoding Unit, Severo Ochoa Molecular Biology Center (CBMSO), CSIC-Autonomous University of Madrid, Madrid, Spain
| | - José Fernández-Piqueras
- Department of Biology, Faculty of Sciences, Autonomous University of Madrid, Madrid, Spain.,Genome Dynamics and Function Program, Genome Decoding Unit, Severo Ochoa Molecular Biology Center (CBMSO), CSIC-Autonomous University of Madrid, Madrid, Spain.,Institute of Health Research Jiménez Diaz Foundation, Madrid, Spain.,Consortium for Biomedical Research in Rare Diseases (CIBERER), Carlos III Institute of Health, Madrid, Spain
| | - Javier Santos
- Department of Biology, Faculty of Sciences, Autonomous University of Madrid, Madrid, Spain.,Genome Dynamics and Function Program, Genome Decoding Unit, Severo Ochoa Molecular Biology Center (CBMSO), CSIC-Autonomous University of Madrid, Madrid, Spain.,Institute of Health Research Jiménez Diaz Foundation, Madrid, Spain.,Consortium for Biomedical Research in Rare Diseases (CIBERER), Carlos III Institute of Health, Madrid, Spain
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2
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Mewes M, Lenders M, Stappers F, Scharnetzki D, Nedele J, Fels J, Wedlich-Söldner R, Brand SM, Schmitz B, Brand E. Soluble adenylyl cyclase (sAC) regulates calcium signaling in the vascular endothelium. FASEB J 2019; 33:13762-13774. [PMID: 31585052 DOI: 10.1096/fj.201900724r] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The vascular endothelium acts as a selective barrier between the bloodstream and extravascular tissues. Intracellular [Ca2+]i signaling is essential for vasoactive agonist-induced stimulation of endothelial cells (ECs), typically including Ca2+ release from the endoplasmic reticulum (ER). Although it is known that interactions of Ca2+ and cAMP as ubiquitous messengers are involved in this process, the individual contribution of cAMP-generating adenylyl cyclases (ACs), including the only soluble AC (sAC; ADCY10), remains less clear. Using life-cell microscopy and plate reader-based [Ca2+]i measurements, we found that human immortalized ECs, primary aortic and cardiac microvascular ECs, and primary vascular smooth muscle cells treated with sAC-specific inhibitor KH7 or anti-sAC-small interfering RNA did not show endogenous or exogenous ATP-induced [Ca2+]i elevation. Of note, a transmembrane AC (tmAC) inhibitor did not prevent ATP-induced [Ca2+]i elevation in ECs. Moreover, l-phenylephrine-dependent constriction of ex vivo mouse aortic ring segments was also reduced by KH7. Analysis of the inositol-1,4,5-trisphosphate (IP3) pathway revealed reduced IP3 receptor phosphorylation after KH7 application, which also prevented [Ca2+]i elevation induced by IP3 receptor agonist adenophostin A. Our results suggest that sAC rather than tmAC controls the agonist-induced ER-dependent Ca2+ response in ECs and may represent a treatment target in arterial hypertension and heart failure.-Mewes, M., Lenders, M., Stappers, F., Scharnetzki, D., Nedele, J., Fels, J., Wedlich-Söldner, R., Brand, S.-M., Schmitz, B., Brand, E. Soluble adenylyl cyclase (sAC) regulates calcium signaling in the vascular endothelium.
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Affiliation(s)
- Mirja Mewes
- Internal Medicine D, Department of Nephrology, Hypertension, and Rheumatology, University Hospital Muenster, Muenster, Germany
| | - Malte Lenders
- Internal Medicine D, Department of Nephrology, Hypertension, and Rheumatology, University Hospital Muenster, Muenster, Germany
| | - Franciska Stappers
- Internal Medicine D, Department of Nephrology, Hypertension, and Rheumatology, University Hospital Muenster, Muenster, Germany
| | - David Scharnetzki
- Internal Medicine D, Department of Nephrology, Hypertension, and Rheumatology, University Hospital Muenster, Muenster, Germany
| | - Johanna Nedele
- Internal Medicine D, Department of Nephrology, Hypertension, and Rheumatology, University Hospital Muenster, Muenster, Germany
| | - Johannes Fels
- Institute for Cell Dynamics and Imaging, Medical Faculty, University of Muenster, Muenster, Germany.,Department of Physiology, Pathophysiology, and Toxicology and Center for Biomedical Education and Research (ZBAF), University of Witten/Herdecke, Witten, Germany
| | - Roland Wedlich-Söldner
- Institute for Cell Dynamics and Imaging, Medical Faculty, University of Muenster, Muenster, Germany
| | - Stefan-Martin Brand
- Institute of Sports Medicine, Molecular Genetics of Cardiovascular Disease, University Hospital Muenster, Muenster, Germany
| | - Boris Schmitz
- Institute of Sports Medicine, Molecular Genetics of Cardiovascular Disease, University Hospital Muenster, Muenster, Germany
| | - Eva Brand
- Internal Medicine D, Department of Nephrology, Hypertension, and Rheumatology, University Hospital Muenster, Muenster, Germany
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3
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Li D, Li F, Guttipatti P, Song Y. A Drosophila In Vivo Injury Model for Studying Neuroregeneration in the Peripheral and Central Nervous System. J Vis Exp 2018:57557. [PMID: 29781994 PMCID: PMC6101115 DOI: 10.3791/57557] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023] Open
Abstract
The regrowth capacity of damaged neurons governs neuroregeneration and functional recovery after nervous system trauma. Over the past few decades, various intrinsic and extrinsic inhibitory factors involved in the restriction of axon regeneration have been identified. However, simply removing these inhibitory cues is insufficient for successful regeneration, indicating the existence of additional regulatory machinery. Drosophila melanogaster, the fruit fly, shares evolutionarily conserved genes and signaling pathways with vertebrates, including humans. Combining the powerful genetic toolbox of flies with two-photon laser axotomy/dendriotomy, we describe here the Drosophila sensory neuron - dendritic arborization (da) neuron injury model as a platform for systematically screening for novel regeneration regulators. Briefly, this paradigm includes a) the preparation of larvae, b) lesion induction to dendrite(s) or axon(s) using a two-photon laser, c) live confocal imaging post-injury and d) data analysis. Our model enables highly reproducible injury of single labeled neurons, axons, and dendrites of well-defined neuronal subtypes, in both the peripheral and central nervous system.
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Affiliation(s)
- Dan Li
- Raymond G. Perelman Center for Cellular and Molecular Therapeutics, The Children's Hospital of Philadelphia
| | - Feng Li
- Raymond G. Perelman Center for Cellular and Molecular Therapeutics, The Children's Hospital of Philadelphia
| | - Pavithran Guttipatti
- Raymond G. Perelman Center for Cellular and Molecular Therapeutics, The Children's Hospital of Philadelphia
| | - Yuanquan Song
- Raymond G. Perelman Center for Cellular and Molecular Therapeutics, The Children's Hospital of Philadelphia; Department of Pathology and Laboratory Medicine, University of Pennsylvania;
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4
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Klemm AH, Bosilj A, Gluncˇic M, Pavin N, Tolic IM. Metaphase kinetochore movements are regulated by kinesin-8 motors and microtubule dynamic instability. Mol Biol Cell 2018; 29:1332-1345. [PMID: 29851559 PMCID: PMC5994901 DOI: 10.1091/mbc.e17-11-0667] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Abstract
During metaphase, sister chromatids are connected to microtubules extending from the opposite spindle poles via kinetochores to protein complexes on the chromosome. Kinetochores congress to the equatorial plane of the spindle and oscillate around it, with kinesin-8 motors restricting these movements. Yet, the physical mechanism underlying kinetochore movements is unclear. We show that kinetochore movements in the fission yeast Schizosaccharomyces pombe are regulated by kinesin-8-promoted microtubule catastrophe, force-induced rescue, and microtubule dynamic instability. A candidate screen showed that among the selected motors only kinesin-8 motors Klp5/Klp6 are required for kinetochore centering. Kinesin-8 accumulates at the end of microtubules, where it promotes catastrophe. Laser ablation of the spindle resulted in kinetochore movement toward the intact spindle pole in wild-type and klp5Δ cells, suggesting that kinetochore movement is driven by pulling forces. Our theoretical model with Langevin description of microtubule dynamic instability shows that kinesin-8 motors are required for kinetochore centering, whereas sensitivity of rescue to force is necessary for the generation of oscillations. We found that irregular kinetochore movements occur for a broader range of parameters than regular oscillations. Thus, our work provides an explanation for how regulation of microtubule dynamic instability contributes to kinetochore congression and the accompanying movements around the spindle center.
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Affiliation(s)
- Anna H Klemm
- Max Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany
| | - Agneza Bosilj
- Department of Physics, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia
| | - Matko Gluncˇic
- Department of Physics, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia
| | - Nenad Pavin
- Department of Physics, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia
| | - Iva M Tolic
- Max Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany.,Division of Molecular Biology, Rud¯er Boškovic´ Institute, 10000 Zagreb, Croatia
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5
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Milas A, Jagrić M, Martinčić J, Tolić IM. Optogenetic reversible knocksideways, laser ablation, and photoactivation on the mitotic spindle in human cells. Methods Cell Biol 2018; 145:191-215. [DOI: 10.1016/bs.mcb.2018.03.024] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
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6
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Buđa R, Vukušić K, Tolić IM. Dissection and characterization of microtubule bundles in the mitotic spindle using femtosecond laser ablation. Methods Cell Biol 2017; 139:81-101. [PMID: 28215341 DOI: 10.1016/bs.mcb.2016.11.007] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The mitotic spindle is a highly organized and dynamic structure required for segregation of the genetic material into two daughter cells. Although most of the individual players involved in building the spindle have been characterized in vitro, a general understanding of how all of the spindle players act together in vivo is still missing. Hence, in recent years, experiments have focused on introducing mechanical perturbations of the spindle on a micron scale, thereby providing insight into its function and organization, as well as into forces acting in the spindle. Among different types of mechanical perturbations, optical ones are more flexible, less invasive, and more precise than other approaches. In this chapter, we describe a detailed protocol for cutting the microtubule bundles in human cells using a near-infrared femtosecond laser. This type of laser microsurgery provides the ability to precisely sever a single microtubule bundle while preserving spindle integrity and dynamics. Furthermore, we describe quantitative measurements obtained from the response of a severed microtubule bundle to laser ablation, which reveal the structure and function of individual parts of the spindle, such as the bridging fiber connecting sister k-fibers. Finally, the method described here can be easily combined with other quantitative techniques to address the complexity of the spindle.
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Affiliation(s)
- R Buđa
- Ruđer Bošković Institute, Zagreb, Croatia
| | - K Vukušić
- Ruđer Bošković Institute, Zagreb, Croatia
| | - I M Tolić
- Ruđer Bošković Institute, Zagreb, Croatia
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7
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Gayathri Vegesna NV, Ronchi P, Durdu S, Terjung S, Pepperkok R. Targeted Ablation Using Laser Nanosurgery. Methods Mol Biol 2017; 1563:107-125. [PMID: 28324605 DOI: 10.1007/978-1-4939-6810-7_8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
Laser-mediated dissection methods have been used for many years to micro-irradiate biological samples, but recent technological progress has rendered this technique more precise, powerful, and easy to use. Today pulsed lasers can be operated with diffraction limited, sub-micrometer precision to ablate intracellular structures. Here, we discuss laser nanosurgery setups and the instrumentation in our laboratory. We describe how to use this technique to ablate cytoskeletal elements in living cells. We also show how this technique can be used in multicellular organisms, to micropuncture and/or ablate cells of interest and finally how to monitor a successful laser nanosurgery.
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Affiliation(s)
| | - Paolo Ronchi
- Cell Biology and Cell Biophysics Unit, EMBL Heidelberg, Meyerhofstrasse 1, 69117, Heidelberg, Germany.,Electron Microscopy Core Facility, EMBL Heidelberg, Meyerhofstrasse 1, 69117, Heidelberg, Germany
| | - Sevi Durdu
- Cell Biology and Cell Biophysics Unit, EMBL Heidelberg, Meyerhofstrasse 1, 69117, Heidelberg, Germany
| | - Stefan Terjung
- Advanced Light Microscopy Facility, EMBL Heidelberg, Meyerhofstrasse 1, 69117, Heidelberg, Germany
| | - Rainer Pepperkok
- Cell Biology and Cell Biophysics Unit, EMBL Heidelberg, Meyerhofstrasse 1, 69117, Heidelberg, Germany. .,Advanced Light Microscopy Facility, EMBL Heidelberg, Meyerhofstrasse 1, 69117, Heidelberg, Germany.
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8
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Wales P, Schuberth CE, Aufschnaiter R, Fels J, García-Aguilar I, Janning A, Dlugos CP, Schäfer-Herte M, Klingner C, Wälte M, Kuhlmann J, Menis E, Hockaday Kang L, Maier KC, Hou W, Russo A, Higgs HN, Pavenstädt H, Vogl T, Roth J, Qualmann B, Kessels MM, Martin DE, Mulder B, Wedlich-Söldner R. Calcium-mediated actin reset (CaAR) mediates acute cell adaptations. eLife 2016; 5. [PMID: 27919320 PMCID: PMC5140269 DOI: 10.7554/elife.19850] [Citation(s) in RCA: 107] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2016] [Accepted: 11/14/2016] [Indexed: 12/24/2022] Open
Abstract
Actin has well established functions in cellular morphogenesis. However, it is not well understood how the various actin assemblies in a cell are kept in a dynamic equilibrium, in particular when cells have to respond to acute signals. Here, we characterize a rapid and transient actin reset in response to increased intracellular calcium levels. Within seconds of calcium influx, the formin INF2 stimulates filament polymerization at the endoplasmic reticulum (ER), while cortical actin is disassembled. The reaction is then reversed within a few minutes. This Calcium-mediated actin reset (CaAR) occurs in a wide range of mammalian cell types and in response to many physiological cues. CaAR leads to transient immobilization of organelles, drives reorganization of actin during cell cortex repair, cell spreading and wound healing, and induces long-lasting changes in gene expression. Our findings suggest that CaAR acts as fundamental facilitator of cellular adaptations in response to acute signals and stress. DOI:http://dx.doi.org/10.7554/eLife.19850.001 Our skeleton plays a vital role in giving shape and structure to our body, it also allows us to make coordinated movements. Similarly, each cell contains a microscopic network of structures and supports called the cytoskeleton that helps cells to adopt specific shapes and is crucial for them to move around. Unlike our skeleton, which is relatively unchanging, the cytoskeleton of each cell constantly changes and adapts to the specific needs of the cell. One part of the cytoskeleton is a dense, flexible meshwork of fibers called the cortex that lies just beneath the surface of the cell. The cortex is constructed using a protein called actin, and many of these proteins join together to form each fiber. When cells need to adapt rapidly to an injury or other sudden changes in their environment they activate a so-called stress response. This response often begins with a rapid increase in the amount of calcium ions inside a cell, which can then trigger changes in actin organization. However, it is not clear how cells under stress are able to globally remodel their actin cytoskeleton without compromising stability and integrity of the cortex. Wales, Schuberth, Aufschnaiter et al. used a range of mammalian cells to investigate how actin responds to stress signals. All cells responded to the resulting influx of calcium ions by deconstructing large parts of the actin cortex and simultaneously forming actin filaments near the center of the cell. Wales, Schuberth, Aufschnaiter et al. termed this response calcium-mediated actin reset (CaAR), as it lasted for only a few minutes before the actin cortex reformed. The experiments show that a protein called INF2 controls CaAR by rapidly removing actin from the cortex and forming new filaments near a cell compartment called the endoplasmic reticulum. CaAR allows cells to rapidly and drastically alter the cortex in response to stress. The experiments also show that this sudden shift in actin can change the activity of certain genes, leading to longer-term effects on the cell. The findings of Wales, Schuberth, Aufschnaiter et al. suggest that calcium ions globally regulate the actin cytoskeleton and hence cell shape and movement under stress. This could be relevant for many important processes and conditions such as wound healing, inflammation and cancer. A future challenge will be to understand the role of CaAR in these processes. DOI:http://dx.doi.org/10.7554/eLife.19850.002
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Affiliation(s)
- Pauline Wales
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
| | - Christian E Schuberth
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
| | - Roland Aufschnaiter
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
| | - Johannes Fels
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
| | | | - Annette Janning
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
| | - Christopher P Dlugos
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany.,Medical Clinic D, University Clinic of Muenster, Muenster, Germany
| | - Marco Schäfer-Herte
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
| | - Christoph Klingner
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany.,AG Molecular Mechanotransduction, Max Planck Institute of Biochemistry, Munich, Germany
| | - Mike Wälte
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
| | - Julian Kuhlmann
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
| | - Ekaterina Menis
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
| | - Laura Hockaday Kang
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
| | - Kerstin C Maier
- Department of Biochemistry, University of Munich, Munich, Germany
| | - Wenya Hou
- Institute of Biochemistry I, Friedrich Schiller University Jena, Jena, Germany
| | - Antonella Russo
- Institute of Immunology, University of Münster, Münster, Germany
| | - Henry N Higgs
- Department of Biochemistry, Dartmouth Medical School, Hanover, United States
| | | | - Thomas Vogl
- Institute of Immunology, University of Münster, Münster, Germany
| | - Johannes Roth
- Institute of Immunology, University of Münster, Münster, Germany
| | - Britta Qualmann
- Institute of Biochemistry I, Friedrich Schiller University Jena, Jena, Germany
| | - Michael M Kessels
- Institute of Biochemistry I, Friedrich Schiller University Jena, Jena, Germany
| | - Dietmar E Martin
- Department of Biochemistry, University of Munich, Munich, Germany
| | - Bela Mulder
- Theory of Biological Matter, FOM Institute AMOLF, Amsterdam, Netherlands
| | - Roland Wedlich-Söldner
- Institute of Cell Dynamics and Imaging, University of Muenster, Muenster, Germany.,Cells-In-Motion Cluster of Excellence (EXC1003 - CiM), University of Münster, Muenster, Germany
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9
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Cojoc G, Roscioli E, Zhang L, García-Ulloa A, Shah JV, Berns MW, Pavin N, Cimini D, Tolić IM, Gregan J. Laser microsurgery reveals conserved viscoelastic behavior of the kinetochore. J Cell Biol 2016; 212:767-76. [PMID: 27002163 PMCID: PMC4810299 DOI: 10.1083/jcb.201506011] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2015] [Accepted: 02/25/2016] [Indexed: 11/29/2022] Open
Abstract
Accurate chromosome segregation depends on proper kinetochore-microtubule attachment. Upon microtubule interaction, kinetochores are subjected to forces generated by the microtubules. In this work, we used laser ablation to sever microtubules attached to a merotelic kinetochore, which is laterally stretched by opposing pulling forces exerted by microtubules, and inferred the mechanical response of the kinetochore from its length change. In both mammalian PtK1 cells and in the fission yeast Schizosaccharomyces pombe, kinetochores shortened after microtubule severing. Interestingly, the inner kinetochore-centromere relaxed faster than the outer kinetochore. Whereas in fission yeast all kinetochores relaxed to a similar length, in PtK1 cells the more stretched kinetochores remained more stretched. Simple models suggest that these differences arise because the mechanical structure of the mammalian kinetochore is more complex. Our study establishes merotelic kinetochores as an experimental model for studying the mechanical response of the kinetochore in live cells and reveals a viscoelastic behavior of the kinetochore that is conserved in yeast and mammalian cells.
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Affiliation(s)
- Gheorghe Cojoc
- Max Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany
| | - Emanuele Roscioli
- Department of Biological Sciences and Biocomplexity Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061
| | - Lijuan Zhang
- Max F. Perutz Laboratories, Department of Chromosome Biology, University of Vienna, 1030 Vienna, Austria
| | - Alfonso García-Ulloa
- Max Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany
| | - Jagesh V Shah
- Department of Systems Biology, Harvard Medical School, Boston, MA 02115
| | - Michael W Berns
- Beckman Laser Institute and University of California, Irvine, Irvine, CA 92612
| | - Nenad Pavin
- Department of Physics, Faculty of Science, University of Zagreb, 10000 Zagreb, Croatia
| | - Daniela Cimini
- Department of Biological Sciences and Biocomplexity Institute, Virginia Polytechnic Institute and State University, Blacksburg, VA 24061
| | - Iva M Tolić
- Max Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany Division of Molecular Biology, Ruđer Bošković Institute, 10000 Zagreb, Croatia
| | - Juraj Gregan
- Max F. Perutz Laboratories, Department of Chromosome Biology, University of Vienna, 1030 Vienna, Austria
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10
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Klingner C, Cherian AV, Fels J, Diesinger PM, Aufschnaiter R, Maghelli N, Keil T, Beck G, Tolić-Nørrelykke IM, Bathe M, Wedlich-Soldner R. Isotropic actomyosin dynamics promote organization of the apical cell cortex in epithelial cells. ACTA ACUST UNITED AC 2015; 207:107-21. [PMID: 25313407 PMCID: PMC4195824 DOI: 10.1083/jcb.201402037] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Apical membrane organization of nonconfluent epithelial cells is driven by a dynamic network of actin and myosin II filaments. Although cortical actin plays an important role in cellular mechanics and morphogenesis, there is surprisingly little information on cortex organization at the apical surface of cells. In this paper, we characterize organization and dynamics of microvilli (MV) and a previously unappreciated actomyosin network at the apical surface of Madin–Darby canine kidney cells. In contrast to short and static MV in confluent cells, the apical surfaces of nonconfluent epithelial cells (ECs) form highly dynamic protrusions, which are often oriented along the plane of the membrane. These dynamic MV exhibit complex and spatially correlated reorganization, which is dependent on myosin II activity. Surprisingly, myosin II is organized into an extensive network of filaments spanning the entire apical membrane in nonconfluent ECs. Dynamic MV, myosin filaments, and their associated actin filaments form an interconnected, prestressed network. Interestingly, this network regulates lateral mobility of apical membrane probes such as integrins or epidermal growth factor receptors, suggesting that coordinated actomyosin dynamics contributes to apical cell membrane organization.
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Affiliation(s)
- Christoph Klingner
- Cellular Dynamics and Cell Patterning and Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany Institute of Cell Dynamics and Imaging and Cells-In-Motion Cluster of Excellence (EXC1003-CiM), University of Münster, 48149 Münster, Germany Institute of Cell Dynamics and Imaging and Cells-In-Motion Cluster of Excellence (EXC1003-CiM), University of Münster, 48149 Münster, Germany
| | - Anoop V Cherian
- Cellular Dynamics and Cell Patterning and Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany
| | - Johannes Fels
- Institute of Cell Dynamics and Imaging and Cells-In-Motion Cluster of Excellence (EXC1003-CiM), University of Münster, 48149 Münster, Germany Institute of Cell Dynamics and Imaging and Cells-In-Motion Cluster of Excellence (EXC1003-CiM), University of Münster, 48149 Münster, Germany
| | - Philipp M Diesinger
- Laboratory for Computational Biology & Biophysics, Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139
| | - Roland Aufschnaiter
- Cellular Dynamics and Cell Patterning and Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany Institute of Cell Dynamics and Imaging and Cells-In-Motion Cluster of Excellence (EXC1003-CiM), University of Münster, 48149 Münster, Germany Institute of Cell Dynamics and Imaging and Cells-In-Motion Cluster of Excellence (EXC1003-CiM), University of Münster, 48149 Münster, Germany
| | - Nicola Maghelli
- Max Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany
| | - Thomas Keil
- Cellular Dynamics and Cell Patterning and Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany
| | - Gisela Beck
- Cellular Dynamics and Cell Patterning and Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany Institute of Cell Dynamics and Imaging and Cells-In-Motion Cluster of Excellence (EXC1003-CiM), University of Münster, 48149 Münster, Germany Institute of Cell Dynamics and Imaging and Cells-In-Motion Cluster of Excellence (EXC1003-CiM), University of Münster, 48149 Münster, Germany
| | - Iva M Tolić-Nørrelykke
- Max Planck Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany Division of Molecular Biology, Ruđer Bošković Institute, 10000 Zagreb, Croatia
| | - Mark Bathe
- Laboratory for Computational Biology & Biophysics, Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139
| | - Roland Wedlich-Soldner
- Cellular Dynamics and Cell Patterning and Department of Molecular Structural Biology, Max Planck Institute of Biochemistry, 82152 Martinsried, Germany Institute of Cell Dynamics and Imaging and Cells-In-Motion Cluster of Excellence (EXC1003-CiM), University of Münster, 48149 Münster, Germany Institute of Cell Dynamics and Imaging and Cells-In-Motion Cluster of Excellence (EXC1003-CiM), University of Münster, 48149 Münster, Germany
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11
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Guarino E, Cojoc G, García-Ulloa A, Tolić IM, Kearsey SE. Real-time imaging of DNA damage in yeast cells using ultra-short near-infrared pulsed laser irradiation. PLoS One 2014; 9:e113325. [PMID: 25409521 PMCID: PMC4237433 DOI: 10.1371/journal.pone.0113325] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2014] [Accepted: 10/22/2014] [Indexed: 01/12/2023] Open
Abstract
Analysis of accumulation of repair and checkpoint proteins at repair sites in yeast nuclei has conventionally used chemical agents, ionizing radiation or induction of endonucleases to inflict localized damage. In addition to these methods, similar studies in mammalian cells have used laser irradiation, which has the advantage that damage is inflicted at a specific nuclear region and at a precise time, and this allows accurate kinetic analysis of protein accumulation at DNA damage sites. We show here that it is feasible to use short pulses of near-infrared laser irradiation to inflict DNA damage in subnuclear regions of yeast nuclei by multiphoton absorption. In conjunction with use of fluorescently-tagged proteins, this allows quantitative analysis of protein accumulation at damage sites within seconds of damage induction. PCNA accumulated at damage sites rapidly, such that maximum accumulation was seen approximately 50 s after damage, then levels declined linearly over 200-1000 s after irradiation. RPA accumulated with slower kinetics such that hardly any accumulation was detected within 60 s of irradiation, and levels subsequently increased linearly over the next 900 s, after which levels were approximately constant (up to ca. 2700 s) at the damage site. This approach complements existing methodologies to allow analysis of key damage sensors and chromatin modification changes occurring within seconds of damage inception.
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Affiliation(s)
- Estrella Guarino
- Department of Zoology, University of Oxford, Oxford, United Kingdom
| | - Gheorghe Cojoc
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
| | | | - Iva M. Tolić
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
- Division of Molecular Biology, Ruđer Bošković Institute, Zagreb, Croatia
| | - Stephen E. Kearsey
- Department of Zoology, University of Oxford, Oxford, United Kingdom
- * E-mail:
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12
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Williams W, Nix P, Bastiani M. Constructing a low-budget laser axotomy system to study axon regeneration in C. elegans. J Vis Exp 2011:3331. [PMID: 22126922 PMCID: PMC3308599 DOI: 10.3791/3331] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022] Open
Abstract
Laser axotomy followed by time-lapse microscopy is a sensitive assay for axon regeneration phenotypes in C. elegans(1). The main difficulty of this assay is the perceived cost ($25-100K) and technical expertise required for implementing a laser ablation system(2,3). However, solid-state pulse lasers of modest costs (<$10K) can provide robust performance for laser ablation in transparent preparations where target axons are "close" to the tissue surface. Construction and alignment of a system can be accomplished in a day. The optical path provided by light from the focused condenser to the ablation laser provides a convenient alignment guide. An intermediate module with all optics removed can be dedicated to the ablation laser and assures that no optical elements need be moved during a laser ablation session. A dichroic in the intermediate module allows simultaneous imaging and laser ablation. Centering the laser beam to the outgoing beam from the focused microscope condenser lens guides the initial alignment of the system. A variety of lenses are used to condition and expand the laser beam to fill the back aperture of the chosen objective lens. Final alignment and testing is performed with a front surface mirrored glass slide target. Laser power is adjusted to give a minimum size ablation spot (<1 um). The ablation spot is centered with fine adjustments of the last kinematically mounted mirror to cross hairs fixed in the imaging window. Laser power for axotomy will be approximately 10X higher than needed for the minimum ablation spot on the target slide (this may vary with the target you use). Worms can be immobilized for laser axotomy and time-lapse imaging by mounting on agarose pads (or in microfluidic chambers(4)). Agarose pads are easily made with 10% agarose in balanced saline melted in a microwave. A drop of molten agarose is placed on a glass slide and flattened with another glass slide into a pad approximately 200 um thick (a single layer of time tape on adjacent slides is used as a spacer). A "Sharpie" cap is used to cut out a uniformed diameter circular pad of 13 mm. Anesthetic (1 ul Muscimol 20mM) and Microspheres (Chris Fang-Yen personal communication) (1 ul 2.65% Polystyrene 0.1 um in water) are added to the center of the pad followed by 3-5 worms oriented so they are lying on their left sides. A glass coverslip is applied and then Vaseline is used to seal the coverslip and prevent evaporation of the sample.
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13
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Khouchaf L, Mathieu C, Kadoun AED. Microanalysis results with low Z gas inside environmental SEM. VACUUM 2011; 86:62-65. [DOI: 10.1016/j.vacuum.2011.04.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/01/2023]
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14
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Maghelli N, Tolić-Nørrelykke IM. Laser ablation of the microtubule cytoskeleton: setting up and working with an ablation system. Methods Mol Biol 2011; 777:261-71. [PMID: 21773935 DOI: 10.1007/978-1-61779-252-6_19] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
Laser ablation is a powerful tool that can be used to study a variety of biological mechanisms. Microscopes with high optical performances are nowadays available, and lasers that could be used to perform ablations have become accessible to every laboratory. Setting up a laser ablation system is a relatively straightforward task; however, it requires some basic knowledge of optics. We illustrate the fundamental components of the experimental setup and describe the most common pitfalls and difficulties encountered when designing, setting up, and working with a laser ablation system.
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Affiliation(s)
- Nicola Maghelli
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany.
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15
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Rumpf C, Cipak L, Schleiffer A, Pidoux A, Mechtler K, Tolić-Nørrelykke IM, Gregan J. Laser microsurgery provides evidence for merotelic kinetochore attachments in fission yeast cells lacking Pcs1 or Clr4. Cell Cycle 2010; 9:3997-4004. [PMID: 20935472 DOI: 10.4161/cc.9.19.13233] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
In order to segregate chromosomes properly, the cell must prevent merotelic kinetochore attachment, an error that occurs when a single kinetochore is attached to microtubules emanating from both spindle poles. Merotelic kinetochore orientation represents a major mechanism of aneuploidy in mitotic mammalian cells and it is the primary mechanism of chromosome instability in cancer cells. Fission yeast mutants defective in putative microtubule-site clamp Pcs1/Mde4 or Clr4/Swi6-dependent centromeric heterochromatin display high frequencies of lagging chromosomes during anaphase. Here, we developed an assay based on laser microsurgery to show that the stretched morphology of lagging kinetochores in pcs1Δ and clr4Δ mutant cells is due to merotelic attachment. We further show that Mde4 is regulated by Cdc2 and that Cdc2 activity prevents precocious localization of Mde4 to the metaphase spindle. Finally, we show that Pcs1/Mde4 complex shares similar features with the conserved kinetochore complex Spc24/Spc25 suggesting that these two complexes may occupy a similar functional niche.
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Affiliation(s)
- Cornelia Rumpf
- Max F. Perutz Laboratories, University of Vienna, Vienna, Austria
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16
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Maghelli N, Tolić-Nørrelykke IM. Optical trapping and laser ablation of microtubules in fission yeast. Methods Cell Biol 2010; 97:173-83. [PMID: 20719271 DOI: 10.1016/s0091-679x(10)97010-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
Abstract
Manipulation has been used as a powerful investigation technique since the early history of biology. Every technical advance resulted in more refined instruments that led to the discovery of new phenomena and to the solution of old problems. The invention of laser in 1960 gave birth to what is now called optical manipulation: the use of light to interact with matter. Since then, the tremendous progress of laser technology made optical manipulation not only an affordable, reliable alternative to traditional manipulation techniques but disclosed also new, intriguing applications that were previously impossible, such as contact-free manipulation. Currently, optical manipulation is used in many fields, yet has the potential of becoming an everyday technique in a broader variety of contexts. Here, we focus on two main optical manipulation techniques: optical trapping and laser ablation. We illustrate with selected applications in fission yeast how in vivo optical manipulation can be used to study organelle positioning and the force balance in the microtubule cytoskeleton.
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Affiliation(s)
- Nicola Maghelli
- Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG), 01307 Dresden, Germany
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17
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Vogel SK, Pavin N, Maghelli N, Jülicher F, Tolić-Nørrelykke IM. Self-organization of dynein motors generates meiotic nuclear oscillations. PLoS Biol 2009; 7:e1000087. [PMID: 19385717 PMCID: PMC2671556 DOI: 10.1371/journal.pbio.1000087] [Citation(s) in RCA: 107] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2008] [Accepted: 03/04/2009] [Indexed: 11/19/2022] Open
Abstract
Meiotic nuclear oscillations in the fission yeast Schizosaccharomyces pombe are crucial for proper chromosome pairing and recombination. We report a mechanism of these oscillations on the basis of collective behavior of dynein motors linking the cell cortex and dynamic microtubules that extend from the spindle pole body in opposite directions. By combining quantitative live cell imaging and laser ablation with a theoretical description, we show that dynein dynamically redistributes in the cell in response to load forces, resulting in more dynein attached to the leading than to the trailing microtubules. The redistribution of motors introduces an asymmetry of motor forces pulling in opposite directions, leading to the generation of oscillations. Our work provides the first direct in vivo observation of self-organized dynamic dynein distributions, which, owing to the intrinsic motor properties, generate regular large-scale movements in the cell.
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Affiliation(s)
- Sven K Vogel
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
| | - Nenad Pavin
- Max Planck Institute for the Physics of Complex Systems, Dresden, Germany
- Department of Physics, Faculty of Science, University of Zagreb, Zagreb, Croatia
| | - Nicola Maghelli
- Max Planck Institute of Molecular Cell Biology and Genetics, Dresden, Germany
| | - Frank Jülicher
- Max Planck Institute for the Physics of Complex Systems, Dresden, Germany
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18
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Maghelli N, Tolić-Nørrelykke IM. Versatile laser-based cell manipulator. JOURNAL OF BIOPHOTONICS 2008; 1:299-309. [PMID: 19343653 DOI: 10.1002/jbio.200810026] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
Here we describe a two-photon microscope and laser ablation setup combined with optical tweezers. We tested the setup on the fission yeast Schizosaccharomyces pombe, a commonly used model organism. We show that long-term imaging can be achieved without significant photo-bleaching or damage of the sample. The setup can precisely ablate sub-micrometer structures, such as microtubules and mitotic spindles, inside living cells, which remain viable after the manipulation. Longer exposure times lead to ablation, while shorter exposures lead to photo-bleaching of the target structure. We used optical tweezers to trap intracellular particles and to displace the cell nucleus. Two-photon fluorescence imaging of the manipulated cell can be performed simultaneously with trapping. The combination of techniques described here may help to solve a variety of problems in cell biology, such as positioning of organelles and the forces exerted by the cytoskeleton.
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Affiliation(s)
- Nicola Maghelli
- Max-Planck-Institute of Molecular Cell Biology and Genetics, 01307 Dresden, Germany.
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