1
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Esquibet M, Mwangi JM, Kiewnick S, Wang X, Mimee B, Handayani ND, Bert W, Helder J, Wainer J, Sakata I, Garcia N, Grenier E, Montarry J. Europe as a secondary distribution hub in the worldwide invasion of the potato cyst nematode Globodera rostochiensis. Sci Rep 2024; 14:13915. [PMID: 38886543 PMCID: PMC11183074 DOI: 10.1038/s41598-024-64617-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 06/11/2024] [Indexed: 06/20/2024] Open
Abstract
The potato cyst nematode Globodera rostochiensis originates from the Andean Mountain region in South America and has unintentionally been introduced to all inhabited continents. Several studies have examined the population genetic structure of this pest in various countries by using microsatellite markers. However, merging microsatellite data produced from different laboratories is challenging and can introduce uncertainty when interpreting the results. To overcome this challenge and to explore invasion routes of this pest, we have genotyped 22 G. rostochiensis populations from all continents. Within populations, the highest genetic diversity was observed in the South American populations, the European populations showed an intermediate level of genetic diversity and the remaining populations were the less diverse. This confirmed pre-existing knowledge such as a first introduction event from South America to Europe, but the less diverse populations could originate either from South America or from Europe. At the continental scale, STRUCTURE genetic clustering output indicated that North America and Asia have experienced at least two introduction events. Comparing different evolutionary scenarios, the Approximate Bayesian Computation analysis showed that Europe served as a secondary distribution centre for the invasion of G. rostochiensis into all other continents (North America, Africa, Asia and Oceania).
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Affiliation(s)
| | - James M Mwangi
- Department of Biological Sciences, Chuka University, Chuka, Kenya
- Julius Kühn-Institut, 38104, Braunschweig, Germany
| | | | - Xiaohong Wang
- US Department of Agriculture, Agricultural Research Service, Robert W. Holley Center for Agriculture and Health and School of Integrative Plant Science, Cornell University, Ithaca, NY, USA
| | - Benjamin Mimee
- Agriculture and Agri-Food Canada, Saint-Jean-sur-Richelieu, QC, Canada
| | - Nurul Dwi Handayani
- Nematology Research Unit, Department of Biology, Ghent University, Ghent, Belgium
- Indonesian Agricultural Quarantine Agency, Ministry of Agriculture, E Building 5th Floor, Jl. Harsono RM, 3 Ragunan, Jakarta, 12550, Indonesia
| | - Wim Bert
- Nematology Research Unit, Department of Biology, Ghent University, Ghent, Belgium
| | - Johannes Helder
- Laboratory of Nematology, Wageningen University, Wageningen, The Netherlands
| | - John Wainer
- AgriBio Centre, Agriculture Victoria Research, Melbourne, Australia
| | - Itaru Sakata
- Hokkaido Agricultural Research Centre (HARC), National Agriculture and Food Research Organization (NARO), Hokkaido, Japan
| | - Nathan Garcia
- Nematology Unit, Plant Health Laboratory, ANSES, 35653, Le Rheu, France
| | - Eric Grenier
- IGEPP, INRAE, Institut Agro, Univ Rennes, Le Rheu, France
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2
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Huang X, Athrey GN, Kaufman PE, Fredregill C, Slotman MA. Effective population size of Culex quinquefasciatus under insecticide-based vector management and following Hurricane Harvey in Harris County, Texas. Front Genet 2023; 14:1297271. [PMID: 38075683 PMCID: PMC10702589 DOI: 10.3389/fgene.2023.1297271] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Accepted: 10/24/2023] [Indexed: 02/12/2024] Open
Abstract
Introduction: Culex quinquefasciatus is a mosquito species of significant public health importance due to its ability to transmit multiple pathogens that can cause mosquito-borne diseases, such as West Nile fever and St. Louis encephalitis. In Harris County, Texas, Cx. quinquefasciatus is a common vector species and is subjected to insecticide-based management by the Harris County Public Health Department. However, insecticide resistance in mosquitoes has increased rapidly worldwide and raises concerns about maintaining the effectiveness of vector control approaches. This concern is highly relevant in Texas, with its humid subtropical climate along the Gulf Coast that provides suitable habitat for Cx. quinquefasciatus and other mosquito species that are known disease vectors. Therefore, there is an urgent and ongoing need to monitor the effectiveness of current vector control programs. Methods: In this study, we evaluated the impact of vector control approaches by estimating the effective population size of Cx. quinquefasciatus in Harris County. We applied Approximate Bayesian Computation to microsatellite data to estimate effective population size. We collected Cx. quinquefasciatus samples from two mosquito control operation areas; 415 and 802, during routine vector monitoring in 2016 and 2017. No county mosquito control operations were applied at area 415 in 2016 and 2017, whereas extensive adulticide spraying operations were in effect at area 802 during the summer of 2016. We collected data for eighteen microsatellite markers for 713 and 723 mosquitoes at eight timepoints from 2016 to 2017 in areas 415 and 802, respectively. We also investigated the impact of Hurricane Harvey's landfall in the Houston area in August of 2017 on Cx. quinquefasciatus population fluctuation. Results: We found that the bottleneck scenario was the most probable historical scenario describing the impact of the winter season at area 415 and area 802, with the highest posterior probability of 0.9167 and 0.4966, respectively. We also detected an expansion event following Hurricane Harvey at area 802, showing a 3.03-fold increase in 2017. Discussion: Although we did not detect significant effects of vector control interventions, we found considerable influences of the winter season and a major hurricane on the effective population size of Cx. quinquefasciatus. The fluctuations in effective population size in both areas showed a significant seasonal pattern. Additionally, the significant population expansion following Hurricane Harvey in 2017 supports the necessity for post-hurricane vector-control interventions.
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Affiliation(s)
- Xinyue Huang
- Department of Entomology, Texas A&M University, College Station, TX, United States
| | - Giridhar N. Athrey
- Department of Poultry Science, Texas A&M University, College Station, TX, United States
| | - Phillip E. Kaufman
- Department of Entomology, Texas A&M University, College Station, TX, United States
| | - Chris Fredregill
- Harris County Public Health, Mosquito & Vector Control Division, Houston, TX, United States
| | - Michel A. Slotman
- Department of Entomology, Texas A&M University, College Station, TX, United States
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3
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Mesas A, Jaramillo A, Castañeda LE. Experimental evolution on heat tolerance and thermal performance curves under contrasting thermal selection in Drosophila subobscura. J Evol Biol 2021; 34:767-778. [PMID: 33662149 DOI: 10.1111/jeb.13777] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2020] [Revised: 02/23/2021] [Accepted: 02/24/2021] [Indexed: 01/04/2023]
Abstract
Ectotherms can respond to global warming via evolutionary change of their upper thermal limits (CTmax ). Thus, the estimation of CTmax and its evolutionary potential is crucial to determine their vulnerability to global warming. However, CTmax estimations depend on the thermal stress intensity, and it is not completely clear whether its evolutionary capacity can be affected. Here, we performed an artificial selection experiment to increase heat tolerance using fast- and slow-ramping selection protocols in Drosophila subobscura. We found that heat tolerance evolved in both selection protocols, exhibiting similar evolutionary change rates and realized heritabilities. Additionally, we estimated the thermal performance curves (TPC) to evaluate correlated responses to selection on heat tolerance. We detected that thermal optimum increased in fast-ramping selection lines, but with a cost at the thermal performance breadth. Conversely, we did not detect changes in the TPC for the slow-ramping selection lines, indicating that thermal stress intensity has important effects on the evolution of thermal physiology of ectotherms. These findings, together with previous studies in D. subobscura reporting interpopulation variability and significant heritabilities for heat tolerance, suggest that evolutionary change can contribute to insect persistence in thermally changing environments and adaptation to global warming conditions.
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Affiliation(s)
- Andrés Mesas
- Laboratorio de Genómica y Biodiversidad, Departamento de Ciencias Básicas, Facultad de Ciencias, Universidad del Bío-Bío, Chillán, Chile
| | - Angélica Jaramillo
- Programa de Genética Humana, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Santiago, Chile
| | - Luis E Castañeda
- Programa de Genética Humana, Instituto de Ciencias Biomédicas, Facultad de Medicina, Universidad de Chile, Santiago, Chile
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4
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Chapuis M, Raynal L, Plantamp C, Meynard CN, Blondin L, Marin J, Estoup A. A young age of subspecific divergence in the desert locust inferred by ABC random forest. Mol Ecol 2020; 29:4542-4558. [DOI: 10.1111/mec.15663] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/10/2020] [Revised: 09/08/2020] [Accepted: 09/09/2020] [Indexed: 02/04/2023]
Affiliation(s)
- Marie‐Pierre Chapuis
- CBGP CIRAD Montpellier France
- CBGP CIRAD INRAE IRD Montpellier SupAgro University of Montpellier Montpellier France
| | - Louis Raynal
- IMAG CNRS University of Montpellier Montpellier France
| | | | - Christine N. Meynard
- CBGP INRAE CIRAD IRD Montpellier SupAgro University of Montpellier Montpellier France
| | | | | | - Arnaud Estoup
- CBGP INRAE CIRAD IRD Montpellier SupAgro University of Montpellier Montpellier France
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5
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Sillero N, Huey RB, Gilchrist G, Rissler L, Pascual M. Distribution modelling of an introduced species: do adaptive genetic markers affect potential range? Proc Biol Sci 2020; 287:20201791. [PMID: 32933443 DOI: 10.1098/rspb.2020.1791] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
Biological invasions have increased in the last few decades mostly due to anthropogenic causes such as globalization of trade. Because invaders sometimes cause large economic losses and ecological disturbances, estimating their origin and potential geographical ranges is useful. Drosophila subobscura is native to the Old World but was introduced in the New World in the late 1970s and spread widely. We incorporate information on adaptive genetic markers into ecological niche modelling and then estimate the most probable geographical source of colonizers; evaluate whether the genetic bottleneck experienced by founders affects their potential distribution; and finally test whether this species has spread to all its potential suitable habitats worldwide. We find the environmental space occupied by this species in its native and introduced distributions are notably the same, although the introduced niche has shifted slightly towards higher temperature and lower precipitation. The genetic bottleneck of founding individuals was a key factor limiting the spread of this introduced species. We also find that regions in the Mediterranean and north-central Portugal show the highest probability of being the origin of the colonizers. Using genetically informed environmental niche modelling can enhance our understanding of the initial colonization and spread of invasive species, and also elucidate potential areas of future expansions worldwide.
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Affiliation(s)
- Neftalí Sillero
- CICGE Centro de Investigação em Ciências Geo-Espaciais, Faculdade de Ciências da Universidade do Porto (FCUP), Observatório Astronómico Prof. Manuel de Barros, Alameda do Monte da Virgem, 4430-146 Vila Nova de Gaia, Portugal
| | - Raymond B Huey
- Department of Biology, University of Washington, Seattle, WA, USA
| | - George Gilchrist
- Division of Environmental Biology, National Science Foundation, Alexandria, VA, USA.,Department of Biology, The College of William and Mary, Williamsburg, VA, USA
| | - Leslie Rissler
- Division of Environmental Biology, National Science Foundation, Alexandria, VA, USA
| | - Marta Pascual
- Departament de Genètica, Microbiologia i Estadística and IRBio, Universitat de Barcelona, Diagonal 643, 08028 Barcelona, Spain
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6
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Guzmán-Colón DK, Pidgeon AM, Martinuzzi S, Radeloff VC. Conservation planning for island nations: Using a network analysis model to find novel opportunities for landscape connectivity in Puerto Rico. Glob Ecol Conserv 2020. [DOI: 10.1016/j.gecco.2020.e01075] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022] Open
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7
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Large-scale genetic admixture suggests high dispersal in an insect pest, the apple fruit moth. PLoS One 2020; 15:e0236509. [PMID: 32785243 PMCID: PMC7423104 DOI: 10.1371/journal.pone.0236509] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Accepted: 07/07/2020] [Indexed: 11/25/2022] Open
Abstract
Knowledge about population genetic structure and dispersal capabilities is important for the development of targeted management strategies for agricultural pest species. The apple fruit moth, Argyresthia conjugella (Lepidoptera, Yponomeutidae), is a pre-dispersal seed predator. Larvae feed on rowanberries (Sorbus aucuparia), and when rowanberry seed production is low (i.e., inter-masting), the moth switches from laying eggs in rowanberries to apples (Malus domestica), resulting in devastating losses in apple crops. Using genetic methods, we investigated if this small moth expresses any local genetic structure, or alternatively if gene flow may be high within the Scandinavian Peninsula (~850.000 km2, 55o - 69o N). Genetic diversity was found to be high (n = 669, mean He = 0.71). For three out of ten tetranucleotide STRs, we detected heterozygote deficiency caused by null alleles, but tests showed little impact on the overall results. Genetic differentiation between the 28 sampling locations was very low (average FST = 0.016, P < 0.000). Surprisingly, we found that all individuals could be assigned to one of two non-geographic genetic clusters, and that a third, geographic cluster was found to be associated with 30% of the sampling locations, with weak but significant signals of isolation-by-distance. Conclusively, our findings suggest wind-aided dispersal and spatial synchrony of both sexes of the apple fruit moth over large areas and across very different climatic zones. We speculate that the species may recently have had two separate genetic origins caused by a genetic bottleneck after inter-masting, followed by rapid dispersal and homogenization of the gene pool across the landscape. We suggest further investigations of spatial genetic similarities and differences of the apple fruit moth at larger geographical scales, through life-stages, across inter-masting, and during attacks by the parasitoid wasp (Microgaster politus).
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8
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Swoboda-Bhattarai KA, Burrack HJ. Diurnal and Seasonal Activity Patterns of Drosophilid Species (Diptera: Drosophilidae) Present in Blackberry Agroecosystems With a Focus on Spotted-Wing Drosophila. ENVIRONMENTAL ENTOMOLOGY 2020; 49:277-287. [PMID: 31961920 DOI: 10.1093/ee/nvz161] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2019] [Indexed: 06/10/2023]
Abstract
Drosophilid species with different life histories have been shown to exhibit similar behavioral patterns related to locating and utilizing resources such as hosts, mates, and food sources. Drosophila suzukii (Matsumura) is an invasive species that differs from other frugivorous drosophilids in that females lay eggs in ripe and ripening fruits instead of overripe or rotten fruits. We hypothesized that there may be diurnal and/or seasonal patterns associated with the movement of drosophilid species into and out of crop fields and their attraction to fermentation-odor-based monitoring traps, and that D. suzukii would conform to similar patterns. To test these hypotheses, we deployed passive, 2-headed Malaise traps between crop fields and wooded edges to simultaneously catch flies moving into and out of crop fields. We also deployed monitoring traps with a fermentation-based bait between crop fields and wooded edges and within crop rows. Traps were deployed weekly in June-August in 2014 and 2015 at two commercial blackberry farm in Cleveland County, NC, and were checked hourly for 24 h, except during darkness. Both D. suzukii and other drosophilid species moved between crop fields and wooded edges and were attracted to monitoring traps primarily during the morning and evening hours. Whereas other drosophilids were captured in traps throughout the season, few D. suzukii were caught in traps until early to mid-July in both years and increased as the season progressed. Understanding D. suzukii movement and activity patterns is essential for the development of effective management strategies.
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Affiliation(s)
| | - Hannah J Burrack
- Department of Entomology and Plant Pathology, North Carolina State University, Raleigh, NC
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9
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Popovic I, Matias AMA, Bierne N, Riginos C. Twin introductions by independent invader mussel lineages are both associated with recent admixture with a native congener in Australia. Evol Appl 2020; 13:515-532. [PMID: 32431733 PMCID: PMC7045716 DOI: 10.1111/eva.12857] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2019] [Revised: 06/27/2019] [Accepted: 07/24/2019] [Indexed: 01/04/2023] Open
Abstract
Introduced species can impose profound impacts on the evolution of receiving communities with which they interact. If native and introduced taxa remain reproductively semi-isolated, human-mediated secondary contact may promote genetic exchange across newly created hybrid zones, potentially impacting native genetic diversity and invasive species spread. Here, we investigate the contributions of recent divergence histories and ongoing (post-introduction) gene flow between the invasive marine mussel, Mytilus galloprovincialis, and a morphologically indistinguishable and taxonomically contentious native Australian taxon, Mytilus planulatus. Using transcriptome-wide markers, we demonstrate that two contemporary M. galloprovincialis introductions into south-eastern Australia originate from genetically divergent lineages from its native range in the Mediterranean Sea and Atlantic Europe, where both introductions have led to repeated instances of admixture between introduced and endemic populations. Through increased genome-wide resolution of species relationships, combined with demographic modelling, we validate that mussels sampled in Tasmania are representative of the endemic Australian taxon (M. planulatus), but share strong genetic affinities to M. galloprovincialis. Demographic inferences indicate late-Pleistocene divergence times and historical gene flow between the Tasmanian endemic lineage and northern M. galloprovincialis, suggesting that native and introduced taxa have experienced a period of historical isolation of at least 100,000 years. Our results demonstrate that many genomic loci and sufficient sampling of closely related lineages in both sympatric (e.g. Australian populations) and allopatric (e.g. northern hemisphere Mytilus taxa) ranges are necessary to accurately (a) interpret patterns of intraspecific differentiation and to (b) distinguish contemporary invasive introgression from signatures left by recent divergence histories in high dispersal marine species. More broadly, our study fills a significant gap in systematic knowledge of native Australian biodiversity and sheds light on the intrinsic challenges for invasive species research when native and introduced species boundaries are not well defined.
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Affiliation(s)
- Iva Popovic
- School of Biological SciencesUniversity of QueenslandSt LuciaQldAustralia
| | | | - Nicolas Bierne
- Institut des Sciences de l’EvolutionUMR 5554CNRS‐IRD‐EPHE‐UMUniversité de MontpellierMontpellierFrance
| | - Cynthia Riginos
- School of Biological SciencesUniversity of QueenslandSt LuciaQldAustralia
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10
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Campillo LC, Barley AJ, Thomson RC. Model-Based Species Delimitation: Are Coalescent Species Reproductively Isolated? Syst Biol 2019; 69:708-721. [DOI: 10.1093/sysbio/syz072] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Revised: 09/06/2019] [Accepted: 10/22/2019] [Indexed: 12/31/2022] Open
Abstract
Abstract
A large and growing fraction of systematists define species as independently evolving lineages that may be recognized by analyzing the population genetic history of alleles sampled from individuals belonging to those species. This has motivated the development of increasingly sophisticated statistical models rooted in the multispecies coalescent process. Specifically, these models allow for simultaneous estimation of the number of species present in a sample of individuals and the phylogenetic history of those species using only DNA sequence data from independent loci. These methods hold extraordinary promise for increasing the efficiency of species discovery but require extensive validation to ensure that they are accurate and precise. Whether the species identified by these methods correspond to the species that would be recognized by alternative species recognition criteria (such as measurements of reproductive isolation) is currently an open question and a subject of vigorous debate. Here, we perform an empirical test of these methods by making use of a classic model system in the history of speciation research, flies of the genus Drosophila. Specifically, we use the uniquely comprehensive data on reproductive isolation that is available for this system, along with DNA sequence data, to ask whether Drosophila species inferred under the multispecies coalescent model correspond to those recognized by many decades of speciation research. We found that coalescent based and reproductive isolation-based methods of inferring species boundaries are concordant for 77% of the species pairs. We explore and discuss potential explanations for these discrepancies. We also found that the amount of prezygotic isolation between two species is a strong predictor of the posterior probability of species boundaries based on DNA sequence data, regardless of whether the species pairs are sympatrically or allopatrically distributed. [BPP; Drosophila speciation; genetic distance; multispecies coalescent.]
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Affiliation(s)
- Luke C Campillo
- School of Life Sciences, University of Hawai’i, Honolulu, HI 96822, USA
| | - Anthony J Barley
- School of Life Sciences, University of Hawai’i, Honolulu, HI 96822, USA
| | - Robert C Thomson
- School of Life Sciences, University of Hawai’i, Honolulu, HI 96822, USA
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11
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Turner TF, Pilger TJ, Osborne MJ, Propst DL. Rio Grande Sucker Pantosteus plebeius is Native to the Gila River Basin. COPEIA 2019. [DOI: 10.1643/cg-19-202] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Affiliation(s)
- Thomas F. Turner
- Department of Biology and Museum of Southwestern Biology, MSC 03-2020, University of New Mexico, Albuquerque, New Mexico 87131; (TFT) . Send reprint requests to TFT
| | - Tyler J. Pilger
- FISHBIO, 180 East 4th Street, Suite 160, Chico, California 95928
| | - Megan J. Osborne
- Department of Biology and Museum of Southwestern Biology, MSC 03-2020, University of New Mexico, Albuquerque, New Mexico 87131; (TFT) . Send reprint requests to TFT
| | - David L. Propst
- Department of Biology and Museum of Southwestern Biology, MSC 03-2020, University of New Mexico, Albuquerque, New Mexico 87131; (TFT) . Send reprint requests to TFT
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12
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Sard N, Robinson J, Kanefsky J, Herbst S, Scribner K. Coalescent models characterize sources and demographic history of recent round goby colonization of Great Lakes and inland waters. Evol Appl 2019; 12:1034-1049. [PMID: 31080513 PMCID: PMC6503821 DOI: 10.1111/eva.12779] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2018] [Accepted: 01/15/2019] [Indexed: 12/25/2022] Open
Abstract
The establishment and spread of aquatic invasive species are ecologically and economically harmful and a source of conservation concern internationally. Processes of species invasion have traditionally been inferred from observational data of species presence/absence and relative abundance. However, genetic-based approaches can provide valuable sources of inference. Restriction site-associated DNA sequencing was used to identify and genotype single nucleotide polymorphism (SNP) loci for Round Gobies (Neogobius melanostomus) (N = 440) from 18 sampling locations in the Great Lakes and in three Michigan, USA, drainages (Flint, Au Sable, and Cheboygan River basins). Sampled rivers differed in size, accessibility, and physical characteristics including man-made dispersal barriers. Population levels of genetic diversity and interpopulation variance in SNP allele frequency were used in coalescence-based approximate Bayesian computation (ABC) to statistically compare models representing competing hypotheses regarding source population, postcolonization dispersal, and demographic history in the Great Lakes and inland waters. Results indicate different patterns of colonization across the three drainages. In the Flint River, models indicate a strong population bottleneck (<3% of contemporary effective population size) and a single founding event from Saginaw Bay led to the colonization of inland river segments. In the Au Sable River, analyses could not distinguish potential source populations, but supported models indicated multiple introductions from one source population. In the Cheboygan River, supported models indicated that colonization likely proceeded from east (Lake Huron source) to west among inland locales sampled in the system. Despite the recent occupancy of Great Lakes and inland habitats, large numbers of loci analyzed in an ABC framework enable statistically supported identification of source populations and reconstruction of the direction of inland spread and demographic history following establishment. Information from analyses can direct management actions to limit the spread of invasive species from identified sources and most probable vectors into additional inland aquatic habitats.
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Affiliation(s)
- Nicholas Sard
- Department of Fisheries and WildlifeMichigan State UniversityEast LansingMichigan
- Present address:
Biology DepartmentSUNY OswegoOswegoNew York
| | - John Robinson
- Department of Fisheries and WildlifeMichigan State UniversityEast LansingMichigan
| | - Jeannette Kanefsky
- Department of Fisheries and WildlifeMichigan State UniversityEast LansingMichigan
| | - Seth Herbst
- Michigan Department of Natural ResourcesEast LansingMichigan
| | - Kim Scribner
- Department of Fisheries and WildlifeMichigan State UniversityEast LansingMichigan
- Department of Integrative BiologyMichigan State UniversityEast LansingMichigan
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13
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Castañeda LE, Romero‐Soriano V, Mesas A, Roff DA, Santos M. Evolutionary potential of thermal preference and heat tolerance in
Drosophila subobscura. J Evol Biol 2019; 32:818-824. [DOI: 10.1111/jeb.13483] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2019] [Revised: 04/16/2019] [Accepted: 04/22/2019] [Indexed: 01/09/2023]
Affiliation(s)
- Luis E. Castañeda
- Programa de Genética Humana Facultad de Medicina Instituto de Ciencias Biomédicas Universidad de Chile Santiago Chile
| | | | - Andrés Mesas
- Facultad de Ciencias Instituto de Ciencias Ambientales y Evolutivas Universidad Austral de Chile Valdivia Valdivia Chile
| | - Derek A. Roff
- Department of Evolution, Ecology and Organismal Biology University of California Riverside California
| | - Mauro Santos
- Grup de Genòmica, Bioinformàtica i Biologia Evolutiva (GGBE) Departament de Genètica i de Microbiologia Universitat Autònoma de Barcelona Barcelona Spain
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14
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Javal M, Lombaert E, Tsykun T, Courtin C, Kerdelhué C, Prospero S, Roques A, Roux G. Deciphering the worldwide invasion of the Asian long‐horned beetle: A recurrent invasion process from the native area together with a bridgehead effect. Mol Ecol 2019; 28:951-967. [DOI: 10.1111/mec.15030] [Citation(s) in RCA: 42] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2018] [Revised: 01/17/2019] [Accepted: 01/17/2019] [Indexed: 01/15/2023]
Affiliation(s)
- Marion Javal
- INRA UR633 Zoologie Forestière Orléans Cedex 2 France
| | - Eric Lombaert
- INRA, Université Côte d'Azur, CNRS ISA Sophia Antipolis France
| | - Tetyana Tsykun
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL Birmensdorf Switzerland
| | | | - Carole Kerdelhué
- CBGP, INRA, CIRAD, IRD, Montpellier SupAgro Université Montpellier Montpellier France
| | - Simone Prospero
- Swiss Federal Institute for Forest, Snow and Landscape Research WSL Birmensdorf Switzerland
| | - Alain Roques
- INRA UR633 Zoologie Forestière Orléans Cedex 2 France
| | - Géraldine Roux
- INRA UR633 Zoologie Forestière Orléans Cedex 2 France
- COST Université d'Orléans Orléans France
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15
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Moghadam NN, Kurbalija Novicic Z, Pertoldi C, Kristensen TN, Bahrndorff S. Effects of photoperiod on life-history and thermal stress resistance traits across populations of Drosophila subobscura. Ecol Evol 2019; 9:2743-2754. [PMID: 30891213 PMCID: PMC6405525 DOI: 10.1002/ece3.4945] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 11/29/2018] [Accepted: 01/08/2019] [Indexed: 11/05/2022] Open
Abstract
INTRODUCTION Organisms use environmental cues to match their phenotype with the future availability of resources and environmental conditions. Changes in the magnitude and frequency of environmental cues such as photoperiod and temperature along latitudes can be used by organisms to predict seasonal changes. While the role of temperature variation on the induction of plastic and seasonal responses is well established, the importance of photoperiod for predicting seasonal changes is less explored. MATERIALS AND METHODS Here we studied changes in life-history and thermal stress resistance traits in Drosophila subobscura in response to variation in photoperiod (6:18, 12:12 and 18:6 light:dark cycles) mimicking seasonal variations in day length. The populations of D. subobscura were collected from five locations along a latitudinal gradient (from North Africa and Europe). These populations were exposed to different photoperiods for two generations, whereafter egg-to-adult viability, productivity, dry body weight, thermal tolerance, and starvation resistance were assessed. RESULTS We found strong effects of photoperiod, origin of populations, and their interactions on life-history and stress resistance traits. Thermal resistance varied between the populations and the effect of photoperiod depended on the trait and the method applied for the assessment of thermal resistance. PERSPECTIVES Our results show a strong effect of the origin of population and photoperiod on a range of fitness-related traits and provide evidence for local adaptation to environmental cues (photoperiod by population interaction). The findings emphasize an important and often neglected role of photoperiod in studies on thermal resistance and suggest that cues induced by photoperiod may provide some buffer enabling populations to cope with a more variable and unpredictable future climate.
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Affiliation(s)
- Neda N. Moghadam
- Department of Chemistry and BioscienceAalborg UniversityAalborg EDenmark
- Department of Biological and Environmental Science, Centre of Excellence in Biological InteractionsUniversity of JyvaskylaJyväskyläFinland
| | - Zorana Kurbalija Novicic
- Animal Ecology, Department of Ecology and Genetics, Evolutionary Biology CenterUppsala UniversityUppsalaSweden
| | - Cino Pertoldi
- Department of Chemistry and BioscienceAalborg UniversityAalborg EDenmark
- Aalborg ZooAalborgDenmark
| | - Torsten N. Kristensen
- Department of Chemistry and BioscienceAalborg UniversityAalborg EDenmark
- Department of BioscienceAarhus UniversityAarhus CDenmark
| | - Simon Bahrndorff
- Department of Chemistry and BioscienceAalborg UniversityAalborg EDenmark
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Patterns of geographic variation of thermal adapted candidate genes in Drosophila subobscura sex chromosome arrangements. BMC Evol Biol 2018; 18:60. [PMID: 29699488 PMCID: PMC5921438 DOI: 10.1186/s12862-018-1178-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Accepted: 04/11/2018] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND The role of chromosomal arrangements in adaptation is supported by the repeatable clinal variation in inversion frequencies across continents in colonizing species such as Drosophila subobscura. However, there is a lack of knowledge on the genetic variation in genes within inversions, possibly targets of climatic selection, across a geographic latitudinal gradient. In the present study we analysed four candidate loci for thermal adaptation, located close to the breakpoints, in two chromosomal arrangements of the sex (A) chromosome of Drosophila subobscura with different thermal preferences. Individual chromosomes with A2 (the inverted arrangement considered warm adapted) or AST (the standard ancestral arrangement considered cold adapted) were sequenced across four European localities at varying latitudes, up to ~ 2500 Kms apart. RESULTS Importantly, we found very low differentiation for each specific arrangement across populations as well as no clinal patterns of genomic variation. This suggests wide gene exchange along the cline. Differentiation between the sex chromosome arrangements was significant in the two more proximal regions relative to the AST orientation but not in the distal ones, independently of their location inside or outside the inversion. This can be possibly due to variation in the levels of gene flux and/or selection acting in these regions. CONCLUSIONS Gene flow appears to have homogenized the genetic content within-arrangement at a wide geographical scale, despite the expected diverse selective pressures in the specific natural environments of the different populations sampled. It is thus likely that the inversion frequency clines in this species are being maintained by local adaptation in face of gene flow. The differences between arrangements at non-coding regions might be associated with the previously observed differential gene expression in different thermal regimes. Higher resolution genomic scans for individual chromosomal arrangements performed over a large environmental gradient are needed to find the targets of selection and further elucidate the adaptive mechanisms maintaining chromosomal inversion polymorphisms.
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Dispersal mechanisms for zebra mussels: population genetics supports clustered invasions over spread from hub lakes in Minnesota. Biol Invasions 2018. [DOI: 10.1007/s10530-018-1714-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
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Sharma R, Goossens B, Heller R, Rasteiro R, Othman N, Bruford MW, Chikhi L. Genetic analyses favour an ancient and natural origin of elephants on Borneo. Sci Rep 2018; 8:880. [PMID: 29343863 PMCID: PMC5772424 DOI: 10.1038/s41598-017-17042-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2016] [Accepted: 11/18/2017] [Indexed: 12/02/2022] Open
Abstract
The origin of the elephant on the island of Borneo remains elusive. Research has suggested two alternative hypotheses: the Bornean elephant stems either from a recent introduction in the 17th century or from an ancient colonization several hundreds of thousands years ago. Lack of elephant fossils has been interpreted as evidence for a very recent introduction, whereas mtDNA divergence from other Asian elephants has been argued to favor an ancient colonization. We investigated the demographic history of Bornean elephants using full-likelihood and approximate Bayesian computation analyses. Our results are at odds with both the recent and ancient colonization hypotheses, and favour a third intermediate scenario. We find that genetic data favour a scenario in which Bornean elephants experienced a bottleneck during the last glacial period, possibly as a consequence of the colonization of Borneo, and from which it has slowly recovered since. Altogether the data support a natural colonization of Bornean elephants at a time when large terrestrial mammals could colonise from the Sunda shelf when sea levels were much lower. Our results are important not only in understanding the unique history of the colonization of Borneo by elephants, but also for their long-term conservation.
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Affiliation(s)
- Reeta Sharma
- Instituto Gulbenkian de Ciência, Rua da Quinta Grande, 6, P-2780-156, Oeiras, Portugal.
| | - Benoit Goossens
- Organisms and Environment Division, School of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AX, UK.
- Danau Girang Field Centre, c/o Sabah Wildlife Department, Wisma Muis, 88100, Kota Kinabalu, Sabah, Malaysia.
- Sabah Wildlife Department, Wisma Muis, 88100, Kota Kinabalu, Sabah, Malaysia.
- Sustainable Places Research Institute, Cardiff University, 33 Park Place, Cardiff, CF10 3BA, UK.
| | - Rasmus Heller
- Department of Biology, University of Copenhagen, Universitetsparken 15, DK-2100, Copenhagen Ø, Denmark
| | - Rita Rasteiro
- Department of Genetics and Genome Biology, University of Leicester, Adrian Building, University Road, Leicester, LE1 7RH, United Kingdom
- School of Biological Sciences, University of Bristol, Life Sciences Building, 24 Tyndall Avenue, Bristol, BS8 1TQ, UK
| | - Nurzhafarina Othman
- Organisms and Environment Division, School of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AX, UK
- Danau Girang Field Centre, c/o Sabah Wildlife Department, Wisma Muis, 88100, Kota Kinabalu, Sabah, Malaysia
| | - Michael W Bruford
- Organisms and Environment Division, School of Biosciences, Cardiff University, Sir Martin Evans Building, Museum Avenue, Cardiff, CF10 3AX, UK
- Sustainable Places Research Institute, Cardiff University, 33 Park Place, Cardiff, CF10 3BA, UK
| | - Lounès Chikhi
- Instituto Gulbenkian de Ciência, Rua da Quinta Grande, 6, P-2780-156, Oeiras, Portugal
- CNRS, Université Paul Sabatier, ENFA, UMR 5174 EDB (Laboratoire Evolution & Diversité Biologique), 118 route de Narbonne, F-31062, Toulouse, France
- Université Paul Sabatier, UMR 5174 EDB, F-31062, Toulouse, France
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Lombaert E, Guillemaud T, Deleury E. Biases of STRUCTURE software when exploring introduction routes of invasive species. Heredity (Edinb) 2018; 120:485-499. [PMID: 29339802 DOI: 10.1038/s41437-017-0042-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2017] [Revised: 10/06/2017] [Accepted: 11/28/2017] [Indexed: 12/21/2022] Open
Abstract
Population genetic methods are widely used to retrace the introduction routes of invasive species. The unsupervised Bayesian clustering algorithm implemented in STRUCTURE is amongst the most frequently used of these methods, but its ability to provide reliable information about introduction routes has never been assessed. We simulated microsatellite datasets to evaluate the extent to which the results provided by STRUCTURE were misleading for the inference of introduction routes. We focused on an invasion scenario involving one native and two independently introduced populations, because it is the sole scenario that can be rejected when obtaining a particular clustering with a STRUCTURE analysis at K = 2 (two clusters). Results were classified as "misleading" or "non-misleading". We investigated the influence of effective size, bottleneck severity and number of loci on the type and frequency of misleading results. We showed that misleading STRUCTURE results were obtained for 10% of all simulated datasets. Our results highlighted two categories of misleading output. The first occurs when the native population has a low level of diversity. In this case, the two introduced populations may be very similar, despite their independent introduction histories. The second category results from convergence issues in STRUCTURE for K = 2, with strong bottleneck severity and/or large numbers of loci resulting in high levels of differentiation between the three populations. Overall, the risk of being misled by STRUCTURE in the context of introduction routes inferences is moderate, but it is important to remain cautious when low genetic diversity or genuine multimodality between runs are involved.
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Affiliation(s)
- Eric Lombaert
- INRA, CNRS, Université Côte d'Azur, ISA, Paris, France.
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Richmond JQ, Backlin AR, Galst-Cavalcante C, O'Brien JW, Fisher RN. Loss of dendritic connectivity in southern California's urban riverscape facilitates decline of an endemic freshwater fish. Mol Ecol 2017; 27:369-386. [PMID: 29193550 DOI: 10.1111/mec.14445] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Revised: 09/28/2017] [Accepted: 10/16/2017] [Indexed: 11/30/2022]
Abstract
Life history adaptations and spatial configuration of metapopulation networks allow certain species to persist in extreme fluctuating environments, yet long-term stability within these systems relies on the maintenance of linkage habitat. Degradation of such linkages in urban riverscapes can disrupt this dynamic in aquatic species, leading to increased extinction debt in local populations experiencing environment-related demographic flux. We used microsatellites and mtDNA to examine the effects of collapsed network structure in the endemic Santa Ana sucker Catostomus santaanae of southern California, a threatened species affected by natural flood-drought cycles, "boom-and-bust" demography, hybridization and presumed artificial transplantation. Our results show a predominance of drift-mediated processes in shaping population structure and that reverse mechanisms for counterbalancing the genetic effects of these phenomena have dissipated with the collapse of dendritic connectivity. We use approximate Bayesian models to support two cases of artificial transplantation and provide evidence that one of the invaded systems better represents the historic processes that maintained genetic variation within watersheds than any remaining drainages where C. santaanae is considered native. We further show that a stable dry gap in the northern range is preventing genetic dilution of pure C. santaanae persisting upstream of a hybrid assemblage involving a non-native sucker and that local accumulation of genetic variation in the same drainage is influenced by position within the network. This work has important implications for declining species that have historically relied on dendritic metapopulation networks to maintain source-sink dynamics in phasic environments, but no longer possess this capacity in urban-converted landscapes.
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Affiliation(s)
- Jonathan Q Richmond
- U.S. Geological Survey, Western Ecological Research Center, San Diego, CA, USA
| | - Adam R Backlin
- U.S. Geological Survey, Western Ecological Research Center, San Diego, CA, USA
| | | | - John W O'Brien
- California Department of Fish and Wildlife, Los Alamitos, CA, USA
| | - Robert N Fisher
- U.S. Geological Survey, Western Ecological Research Center, San Diego, CA, USA
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Puerma E, Orengo DJ, Aguadé M. Inversion evolutionary rates might limit the experimental identification of inversion breakpoints in non-model species. Sci Rep 2017; 7:17281. [PMID: 29222501 PMCID: PMC5722822 DOI: 10.1038/s41598-017-17650-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2017] [Accepted: 11/29/2017] [Indexed: 11/09/2022] Open
Abstract
Chromosomal inversions are structural changes that alter gene order but generally not gene content in the affected region. In Drosophila, extensive cytological studies revealed the widespread character of inversion polymorphism, with evidence for its adaptive character. In Drosophila subobscura, polymorphism affects both its four large autosomal elements and its X (A) chromosome. The characterization of eight of these autosomal inversions breakpoints revealed that most of them originated through the staggered-breaks mechanism. Here, we have performed chromosomal walks to identify the breakpoints of two X-chromosome widely distributed inversions -A2 and A1- of D. subobscura. Inversion A2 is considered a warm-adapted arrangement that exhibits parallel latitudinal clines in the species ancestral distribution area and in both American subcontinents, whereas inversion A1 is only present in the Palearctic region where it presents an east-west cline. The duplication detected at the A2 inversion breakpoints is consistent with its origin by the staggered-breaks mechanism. Inversion A1 breakpoints could not be molecularly identified even though they could be narrowly delimited. This result points to chromosome walking limitations when using as a guide the genome of other species. Limitations stem from the rate of evolution by paracentric inversions, which in Drosophila is highest for the X chromosome.
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Affiliation(s)
- Eva Puerma
- Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain
| | - Dorcas J Orengo
- Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain
| | - Montserrat Aguadé
- Departament de Genètica, Microbiologia i Estadística, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Barcelona, Spain.
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Voillemot M, Rougemont Q, Roux C, Pannell JR. The divergence history of the perennial plant Linaria cavanillesii
confirms a recent loss of self-incompatibility. J Evol Biol 2017; 31:136-147. [DOI: 10.1111/jeb.13209] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2017] [Revised: 11/03/2017] [Accepted: 11/07/2017] [Indexed: 11/30/2022]
Affiliation(s)
- M. Voillemot
- Department of Ecology and Evolution; Biophore/Sorge; University of Lausanne; Lausanne Switzerland
| | - Q. Rougemont
- Institut de Biologie Intégrative et des Systèmes (IBIS); University of Laval; Québec City Québec Canada
| | - C. Roux
- Department of Ecology and Evolution; Biophore/Sorge; University of Lausanne; Lausanne Switzerland
- Unité Evo-Eco-Paléo (EEP) - UMR 8198; CNRS; Université de Lille Sciences et Technologies; Villeneuve d'Ascq Cedex France
| | - J. R. Pannell
- Department of Ecology and Evolution; Biophore/Sorge; University of Lausanne; Lausanne Switzerland
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Andrew SC, Awasthy M, Bolton PE, Rollins LA, Nakagawa S, Griffith SC. The genetic structure of the introduced house sparrow populations in Australia and New Zealand is consistent with historical descriptions of multiple introductions to each country. Biol Invasions 2017. [DOI: 10.1007/s10530-017-1643-6] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Fraimout A, Debat V, Fellous S, Hufbauer RA, Foucaud J, Pudlo P, Marin JM, Price DK, Cattel J, Chen X, Deprá M, François Duyck P, Guedot C, Kenis M, Kimura MT, Loeb G, Loiseau A, Martinez-Sañudo I, Pascual M, Polihronakis Richmond M, Shearer P, Singh N, Tamura K, Xuéreb A, Zhang J, Estoup A. Deciphering the Routes of invasion of Drosophila suzukii by Means of ABC Random Forest. Mol Biol Evol 2017; 34:980-996. [PMID: 28122970 PMCID: PMC5400373 DOI: 10.1093/molbev/msx050] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Deciphering invasion routes from molecular data is crucial to understanding biological invasions, including identifying bottlenecks in population size and admixture among distinct populations. Here, we unravel the invasion routes of the invasive pest Drosophila suzukii using a multi-locus microsatellite dataset (25 loci on 23 worldwide sampling locations). To do this, we use approximate Bayesian computation (ABC), which has improved the reconstruction of invasion routes, but can be computationally expensive. We use our study to illustrate the use of a new, more efficient, ABC method, ABC random forest (ABC-RF) and compare it to a standard ABC method (ABC-LDA). We find that Japan emerges as the most probable source of the earliest recorded invasion into Hawaii. Southeast China and Hawaii together are the most probable sources of populations in western North America, which then in turn served as sources for those in eastern North America. European populations are genetically more homogeneous than North American populations, and their most probable source is northeast China, with evidence of limited gene flow from the eastern US as well. All introduced populations passed through bottlenecks, and analyses reveal five distinct admixture events. These findings can inform hypotheses concerning how this species evolved between different and independent source and invasive populations. Methodological comparisons indicate that ABC-RF and ABC-LDA show concordant results if ABC-LDA is based on a large number of simulated datasets but that ABC-RF out-performs ABC-LDA when using a comparable and more manageable number of simulated datasets, especially when analyzing complex introduction scenarios.
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Affiliation(s)
- Antoine Fraimout
- Institut de Systématique, Évolution, Biodiversité, ISYEB - UMR 7205 - CNRS, MNHN, UPMC, EPHE, Muséum national d'Histoire naturelle, Sorbonne Universités, Paris, France
| | - Vincent Debat
- Institut de Systématique, Évolution, Biodiversité, ISYEB - UMR 7205 - CNRS, MNHN, UPMC, EPHE, Muséum national d'Histoire naturelle, Sorbonne Universités, Paris, France
| | - Simon Fellous
- INRA, Centre de Biologie et de Gestion des Populations (UMR INRA IRD Cirad Montpellier SupAgro), Montferrier-Sur-Lez, France
| | - Ruth A Hufbauer
- INRA, Centre de Biologie et de Gestion des Populations (UMR INRA IRD Cirad Montpellier SupAgro), Montferrier-Sur-Lez, France.,Colorado State University, Fort Collins, CO
| | - Julien Foucaud
- INRA, Centre de Biologie et de Gestion des Populations (UMR INRA IRD Cirad Montpellier SupAgro), Montferrier-Sur-Lez, France
| | - Pierre Pudlo
- Centre de Mathématiques et Informatique, Aix-Marseille Université, Marseille, France
| | - Jean-Michel Marin
- Institut Montpelliérain Alexander Grothendieck, Université de Montpellier, Montpellier, France
| | - Donald K Price
- Tropical Conservation Biology & Environmental Science, University of Hawaii at Hilo, HI
| | - Julien Cattel
- Laboratoire de Biométrie et Biologie Evolutive, UMR CNRS 5558, Université Claude Bernard Lyon 1, Villeurbanne, France
| | - Xiao Chen
- College of Plant Protection, Yunnan Agricultural University, Kunming, Yunnan Province, People's Republic of China
| | - Marindia Deprá
- Programa de Pós Graduação em Genética e Biologia Molecular, Programa de Pós Graduação em Biologia Animal, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
| | | | | | | | - Masahito T Kimura
- Graduate School of Environmental Earth Science, Hokkaido Daigaku University, Sapporo, Hokkaido Prefecture, Japan
| | - Gregory Loeb
- Department of Entomology, Cornell University, Ithaca, NY
| | - Anne Loiseau
- INRA, Centre de Biologie et de Gestion des Populations (UMR INRA IRD Cirad Montpellier SupAgro), Montferrier-Sur-Lez, France
| | - Isabel Martinez-Sañudo
- Dipartimento di Agronomia Animali Alimenti Risorse Naturali e Ambiente, Universita degli Studi di Padova, Padova, Italy
| | - Marta Pascual
- Departament de Genètica, Universitat de Barcelona, Barcelona, Spain
| | | | - Peter Shearer
- Mid-Columbia Agricultural Research and Extension Center, Oregon State University, Hood River, OR
| | - Nadia Singh
- Department of Genetics, North Carolina State University, Raleigh, NC
| | - Koichiro Tamura
- Department of Biological Sciences, Tokyo Metropolitan University, Tokyo, Japan
| | - Anne Xuéreb
- INRA, Centre de Biologie et de Gestion des Populations (UMR INRA IRD Cirad Montpellier SupAgro), Montferrier-Sur-Lez, France
| | - Jinping Zhang
- MoA-CABI Joint Laboratory for Bio-safety, Chinese Academy of Agricultural Sciences, BeiXiaGuan, Haidian Qu, China
| | - Arnaud Estoup
- INRA, Centre de Biologie et de Gestion des Populations (UMR INRA IRD Cirad Montpellier SupAgro), Montferrier-Sur-Lez, France
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Scribner KT, Soiseth C, McGuire J, Sage GK, Thorsteinson L, Nielsen JL, Knudsen E. Genetic assessment of the effects of streamscape succession on coho salmon Oncorhynchus kisutch colonization in recently deglaciated streams. JOURNAL OF FISH BIOLOGY 2017; 91:195-218. [PMID: 28523791 DOI: 10.1111/jfb.13337] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2016] [Accepted: 04/20/2017] [Indexed: 06/07/2023]
Abstract
Measures of genetic diversity within and among populations and historical geomorphological data on stream landscapes were used in model simulations based on approximate Bayesian computation (ABC) to examine hypotheses of the relative importance of stream features (geomorphology and age) associated with colonization events and gene flow for coho salmon Oncorhynchus kisutch breeding in recently deglaciated streams (50-240 years b.p.) in Glacier Bay National Park (GBNP), Alaska. Population estimates of genetic diversity including heterozygosity and allelic richness declined significantly and monotonically from the oldest and largest to youngest and smallest GBNP streams. Interpopulation variance in allele frequency increased with increasing distance between streams (r = 0·435, P < 0·01) and was inversely related to stream age (r = -0·281, P < 0·01). The most supported model of colonization involved ongoing or recent (<10 generations before sampling) colonization originating from large populations outside Glacier Bay proper into all other GBNP streams sampled. Results here show that sustained gene flow from large source populations is important to recently established O. kisutch metapopulations. Studies that document how genetic and demographic characteristics of newly founded populations vary associated with successional changes in stream habitat are of particular importance to and have significant implications for, restoration of declining or repatriation of extirpated populations in other regions of the species' native range.
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Affiliation(s)
- K T Scribner
- Department of Fisheries and Wildlife, Michigan State University, East Lansing, MI, 48824-1222, U.S.A
- Department of Integrative Biology, Michigan State University, East Lansing, MI, 48824-1222, U.S.A
| | - C Soiseth
- Glacier Bay National Park and Preserve, P. O. Box 140, Gustavus, AK, 99826, U.S.A
| | - J McGuire
- Department of Integrative Biology, Michigan State University, East Lansing, MI, 48824-1222, U.S.A
| | - G K Sage
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK, 99508, U.S.A
| | - L Thorsteinson
- Alaska Region, U. S. Geological Survey, 250 Egan Drive, Juneau, AK, 99801, U.S.A
| | - J L Nielsen
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK, 99508, U.S.A
| | - E Knudsen
- U. S. Geological Survey, Alaska Science Center, 4210 University Drive, Anchorage, AK, 99508, U.S.A
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Salas-Leiva DE, Meerow AW, Calonje M, Francisco-Ortega J, Griffith MP, Nakamura K, Sánchez V, Knowles L, Knowles D. Shifting Quaternary migration patterns in the Bahamian archipelago: Evidence from the Zamia pumila complex at the northern limits of the Caribbean island biodiversity hotspot. AMERICAN JOURNAL OF BOTANY 2017; 104:757-771. [PMID: 28515078 DOI: 10.3732/ajb.1700054] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/08/2017] [Accepted: 04/10/2017] [Indexed: 06/07/2023]
Abstract
PREMISE OF THE STUDY The Bahamas archipelago is formed by young, tectonically stable carbonate banks that harbor direct geological evidence of global ice-volume changes. We sought to detect signatures of major changes on gene flow patterns and reconstruct the phylogeographic history of the monophyletic Zamia pumila complex across the Bahamas. METHODS Nuclear molecular markers with both high and low mutation rates were used to capture two different time scale signatures and test several gene flow and demographic hypotheses. KEY RESULTS Single-copy nuclear genes unveiled apparent ancestral admixture on Andros, suggesting a significant role of this island as main hub of diversity of the archipelago. We detected demographic and spatial expansion of the Zamia pumila complex on both paleo-provinces around the Piacenzian (Pliocene)/Gelasian (Pleistocene). Populations evidenced signatures of different migration models that have occurred at two different times. Populations on Long Island (Z. lucayana) may either represent a secondary colonization of the Bahamas by Zamia or a rapid and early-divergence event of at least one population on the Bahamas. CONCLUSIONS Despite changes in migration patterns with global climate, expected heterozygosity with both marker systems remains within the range reported for cycads, but with significant levels of increased inbreeding detected by the microsatellites. This finding is likely associated with reduced gene flow between and within paleo-provinces, accompanied by genetic drift, as rising seas enforced isolation. Our study highlights the importance of the maintenance of the predominant direction of genetic exchange and the role of overseas dispersion among the islands during climate oscillations.
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Affiliation(s)
- Dayana E Salas-Leiva
- International Center for Tropical Botany, Department of Biological Sciences, 11200 S.W. 8th Street, Florida International University, Miami, Florida 33199 USA
- USDA-ARS-SHRS, 13601 Old Cutler Road, Miami, Florida 33158 USA
- Montgomery Botanical Center, 11901 Old Cutler Road, Coral Gables, Florida 33156 USA
| | - Alan W Meerow
- USDA-ARS-SHRS, 13601 Old Cutler Road, Miami, Florida 33158 USA
| | - Michael Calonje
- Montgomery Botanical Center, 11901 Old Cutler Road, Coral Gables, Florida 33156 USA
| | - Javier Francisco-Ortega
- International Center for Tropical Botany, Department of Biological Sciences, 11200 S.W. 8th Street, Florida International University, Miami, Florida 33199 USA
- Kushlan Tropical Science Institute, 11935 Old Cutler Road, Fairchild Tropical Botanic Garden, Coral Gables, Florida 33156 USA
| | - M Patrick Griffith
- Montgomery Botanical Center, 11901 Old Cutler Road, Coral Gables, Florida 33156 USA
| | - Kyoko Nakamura
- USDA-ARS-SHRS, 13601 Old Cutler Road, Miami, Florida 33158 USA
| | - Vanessa Sánchez
- USDA-ARS-SHRS, 13601 Old Cutler Road, Miami, Florida 33158 USA
| | - Lindy Knowles
- Bahamas National Trust, P. O. Box N-4105, Bay Street Business Centre, Bay Street, Nassau
| | - David Knowles
- The Bahamas, Bahamas National Trust, Abaco National Park, P.O. Box AB-20953, Marsh Harbour, Abaco, The Bahamas
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29
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Porcelli D, Westram AM, Pascual M, Gaston KJ, Butlin RK, Snook RR. Gene expression clines reveal local adaptation and associated trade-offs at a continental scale. Sci Rep 2016; 6:32975. [PMID: 27599812 PMCID: PMC5013434 DOI: 10.1038/srep32975] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2016] [Accepted: 08/18/2016] [Indexed: 01/03/2023] Open
Abstract
Local adaptation, where fitness in one environment comes at a cost in another, should lead to spatial variation in trade-offs between life history traits and may be critical for population persistence. Recent studies have sought genomic signals of local adaptation, but often have been limited to laboratory populations representing two environmentally different locations of a species’ distribution. We measured gene expression, as a proxy for fitness, in males of Drosophila subobscura, occupying a 20° latitudinal and 11 °C thermal range. Uniquely, we sampled six populations and studied both common garden and semi-natural responses to identify signals of local adaptation. We found contrasting patterns of investment: transcripts with expression positively correlated to latitude were enriched for metabolic processes, expressed across all tissues whereas negatively correlated transcripts were enriched for reproductive processes, expressed primarily in testes. When using only the end populations, to compare our results to previous studies, we found that locally adaptive patterns were obscured. While phenotypic trade-offs between metabolic and reproductive functions across widespread species are well-known, our results identify underlying genetic and tissue responses at a continental scale that may be responsible for this. This may contribute to understanding population persistence under environmental change.
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Affiliation(s)
- Damiano Porcelli
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Anja M Westram
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Marta Pascual
- Departament de Genètica, Microbiologia I Estabdistica and IrBio, Universitat de Barcelona, Barcelona 08028, ES
| | - Kevin J Gaston
- Environment and Sustainability Institute, University of Exeter, Penryn, Cornwall TR10 9FE, UK
| | - Roger K Butlin
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
| | - Rhonda R Snook
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield S10 2TN, UK
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30
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Jacquet S, Huber K, Pagès N, Talavera S, Burgin LE, Carpenter S, Sanders C, Dicko AH, Djerbal M, Goffredo M, Lhor Y, Lucientes J, Miranda-Chueca MA, Pereira Da Fonseca I, Ramilo DW, Setier-Rio ML, Bouyer J, Chevillon C, Balenghien T, Guis H, Garros C. Range expansion of the Bluetongue vector, Culicoides imicola, in continental France likely due to rare wind-transport events. Sci Rep 2016; 6:27247. [PMID: 27263862 PMCID: PMC4893744 DOI: 10.1038/srep27247] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Accepted: 05/13/2016] [Indexed: 02/04/2023] Open
Abstract
The role of the northward expansion of Culicoides imicola Kieffer in recent and unprecedented outbreaks of Culicoides-borne arboviruses in southern Europe has been a significant point of contention. We combined entomological surveys, movement simulations of air-borne particles, and population genetics to reconstruct the chain of events that led to a newly colonized French area nestled at the northern foot of the Pyrenees. Simulating the movement of air-borne particles evidenced frequent wind-transport events allowing, within at most 36 hours, the immigration of midges from north-eastern Spain and Balearic Islands, and, as rare events, their immigration from Corsica. Completing the puzzle, population genetic analyses discriminated Corsica as the origin of the new population and identified two successive colonization events within west-Mediterranean basin. Our findings are of considerable importance when trying to understand the invasion of new territories by expanding species.
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Affiliation(s)
- Stéphanie Jacquet
- Cirad, UMR15 CMAEE, 34398; INRA, UMR1309 CMAEE, 34398 Montpellier, France.,CNRS, Université de Montpellier, UMR 5290 Maladies Infectieuses &Vecteurs-Ecologie, Génétique, Ecologie, Contrôle (MIVEGEC), Montpellier, France.,IRD, UR 224 MIVEGEC, BP 64501, Agropolis, 34 394 Montpellier cedex 5, France
| | - Karine Huber
- INRA, UMR1309 CMAEE,34398; Cirad, UMR15 CMAEE, 34398 Montpellier, France
| | - Nonito Pagès
- Cirad, UMR15 CMAEE, 97170 Petit-Bourg, France; INRA, UMR1309 CMAEE 34398 Montpellier, France.,Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, Bellaterra (Cerdanyola del Vallès), Spain
| | - Sandra Talavera
- Centre de Recerca en Sanitat Animal (CReSA), UAB-IRTA, Campus de la Universitat Autònoma de Barcelona, Bellaterra (Cerdanyola del Vallès), Spain
| | | | - Simon Carpenter
- Vector-borne Viral Diseases Programme, The Pirbright Institute, Pirbright, UK
| | - Christopher Sanders
- Vector-borne Viral Diseases Programme, The Pirbright Institute, Pirbright, UK
| | - Ahmadou H Dicko
- West African Science Service on Climate Change and Adapted Land Use, Climate Change Economics Research Program, Cheikh Anta Diop University, Sénégal
| | - Mouloud Djerbal
- Institut National de la Médecine Vétérinaire (IMV), Laboratoire vétérinaire régional, Tizi Ouzou, Algeria
| | - Maria Goffredo
- Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', 64100 Teramo, Italy
| | - Youssef Lhor
- Office National de Sécurité Sanitaire des produits Alimentaires (ONSSA), Rabat, Morocco
| | - Javier Lucientes
- Faculdad de Veterinaria, University of Zaragoza (UZ), Zaragoza, Spain
| | | | | | - David W Ramilo
- CIISA, Faculdade de Medecina Veterinaria, Universidade de Lisboa (FMV-ULisboa), Lisboa, Portugal
| | - Marie-Laure Setier-Rio
- Entente interdépartementale pour la démoustication-Méditerranée (EID-Méd), Montpellier, France
| | - Jérémy Bouyer
- Cirad, UMR15 CMAEE, 34398; INRA, UMR1309 CMAEE, 34398 Montpellier, France.,Institut Sénégalais de Recherches Agricoles (ISRA), Laboratoire National de l'Elevage et de Recherches Vétérinaires, Dakar, Sénégal
| | - Christine Chevillon
- CNRS, Université de Montpellier, UMR 5290 Maladies Infectieuses &Vecteurs-Ecologie, Génétique, Ecologie, Contrôle (MIVEGEC), Montpellier, France.,IRD, UR 224 MIVEGEC, BP 64501, Agropolis, 34 394 Montpellier cedex 5, France
| | - Thomas Balenghien
- Cirad, UMR15 CMAEE, 34398; INRA, UMR1309 CMAEE, 34398 Montpellier, France
| | - Hélène Guis
- Cirad, UMR15 CMAEE, 34398; INRA, UMR1309 CMAEE, 34398 Montpellier, France
| | - Claire Garros
- Cirad, UMR15 CMAEE, 34398; INRA, UMR1309 CMAEE, 34398 Montpellier, France
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31
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Mandák B, Havrdová A, Krak K, Hadincová V, Vít P, Zákravský P, Douda J. Recent similarity in distribution ranges does not mean a similar postglacial history: a phylogeographical study of the boreal tree species Alnus incana based on microsatellite and chloroplast DNA variation. THE NEW PHYTOLOGIST 2016; 210:1395-1407. [PMID: 26831816 DOI: 10.1111/nph.13848] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Accepted: 12/06/2015] [Indexed: 06/05/2023]
Abstract
We reconstructed the historical pattern of postglacial biogeographic range expansion of the boreal tree species Alnus incana in Europe. To assess population genetic structure and diversity, we performed a combined analysis of nuclear microsatellite loci and chloroplast DNA sequences (65 populations, 1004 individuals). Analysis of haplotype and microsatellite diversity revealed that southeastern refugial populations situated in the Carpathians and the Balkan Peninsula did not spread north and cannot be considered as important source populations for postglacial recolonization of Europe; populations in Eastern Europe did not establish Fennoscandian populations; populations in Fennoscandia and Eastern Europe have no unique genetic cluster, but represent a mix with a predominant cluster typical for Central Europe; and that colonization of Fennoscandia and Eastern Europe took place from Central Europe. Our findings highlight the importance of an effective refugium in Central Europe located outside classical southern refugia confirming the existence of northern refugia for boreal trees in Europe. The postglacial range expansion of A. incana did not follow the model established for Picea abies. Fennoscandian populations are not derived from Eastern European ones, but from Central European ones.
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Affiliation(s)
- Bohumil Mandák
- Institute of Botany, Academy of Sciences of the Czech Republic, Zámek 1, CZ-252 43, Průhonice, Czech Republic
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, CZ-165 21, Praha 6 - Suchdol, Czech Republic
| | - Alena Havrdová
- Institute of Botany, Academy of Sciences of the Czech Republic, Zámek 1, CZ-252 43, Průhonice, Czech Republic
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, CZ-165 21, Praha 6 - Suchdol, Czech Republic
| | - Karol Krak
- Institute of Botany, Academy of Sciences of the Czech Republic, Zámek 1, CZ-252 43, Průhonice, Czech Republic
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, CZ-165 21, Praha 6 - Suchdol, Czech Republic
| | - Věroslava Hadincová
- Institute of Botany, Academy of Sciences of the Czech Republic, Zámek 1, CZ-252 43, Průhonice, Czech Republic
| | - Petr Vít
- Institute of Botany, Academy of Sciences of the Czech Republic, Zámek 1, CZ-252 43, Průhonice, Czech Republic
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, CZ-165 21, Praha 6 - Suchdol, Czech Republic
| | - Petr Zákravský
- Institute of Botany, Academy of Sciences of the Czech Republic, Zámek 1, CZ-252 43, Průhonice, Czech Republic
| | - Jan Douda
- Institute of Botany, Academy of Sciences of the Czech Republic, Zámek 1, CZ-252 43, Průhonice, Czech Republic
- Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Kamýcká 129, CZ-165 21, Praha 6 - Suchdol, Czech Republic
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32
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Foucaud J, Moreno C, Pascual M, Rezende EL, Castañeda LE, Gibert P, Mery F. Introduced Drosophila subobscura populations perform better than native populations during an oviposition choice task due to increased fecundity but similar learning ability. Ecol Evol 2016; 6:1725-36. [PMID: 26925216 PMCID: PMC4755011 DOI: 10.1002/ece3.2015] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2015] [Revised: 01/25/2016] [Accepted: 01/27/2016] [Indexed: 12/13/2022] Open
Abstract
The success of invasive species is tightly linked to their fitness in a putatively novel environment. While quantitative components of fitness have been studied extensively in the context of invasive species, fewer studies have looked at qualitative components of fitness, such as behavioral plasticity, and their interaction with quantitative components, despite intuitive benefits over the course of an invasion. In particular, learning is a form of behavioral plasticity that makes it possible to finely tune behavior according to environmental conditions. Learning can be crucial for survival and reproduction of introduced organisms in novel areas, for example, for detecting new predators, or finding mates or oviposition sites. Here we explored how oviposition performance evolved in relation to both fecundity and learning during an invasion, using native and introduced Drosophila subobscura populations performing an ecologically relevant task. Our results indicated that, under comparable conditions, invasive populations performed better during our oviposition task than did native populations. This was because invasive populations had higher fecundity, together with similar cognitive performance when compared to native populations, and that there was no interaction between learning and fecundity. Unexpectedly, our study did not reveal an allocation trade‐off (i.e., a negative relationship) between learning and fecundity. On the contrary, the pattern we observed was more consistent with an acquisition trade‐off, meaning that fecundity could be limited by availability of resources, unlike cognitive ability. This pattern might be the consequence of escaping natural enemies and/or competitors during the introduction. The apparent lack of evolution of learning may indicate that the introduced population did not face novel cognitive challenges in the new environment (i.e., cognitive “pre‐adaptation”). Alternatively, the evolution of learning may have been transient and therefore not detected.
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Affiliation(s)
- Julien Foucaud
- Laboratoire Evolution, Génomes, Comportement et Ecologie UMR-CNRS 9191 Gif/Yvette France
| | - Céline Moreno
- Laboratoire Evolution, Génomes, Comportement et Ecologie UMR-CNRS 9191 Gif/Yvette France
| | - Marta Pascual
- Department of Genetics and IrBio Universitat de Barcelona Av. Diagonal 643 08028 Barcelona Spain
| | - Enrico L Rezende
- Department of Life Sciences University of Roehampton Holybourne Avenue London SW15 4JD UK
| | - Luis E Castañeda
- Instituto de Ciencias Ambientales y Evolutivas Universidad Austral de Chile PO 5090000 Valdivia Chile
| | - Patricia Gibert
- Université de Lyon Université Lyon1 Laboratoire de Biométrie et Biologie Evolutive UMR CNRS 5558 43 Bd du 11 Novembre 1918 69622 Villeurbanne Cedex France
| | - Frederic Mery
- Laboratoire Evolution, Génomes, Comportement et Ecologie UMR-CNRS 9191 Gif/Yvette France
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33
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Complex patterns of global spread in invasive insects: eco-evolutionary and management consequences. Biol Invasions 2016. [DOI: 10.1007/s10530-016-1082-9] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
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34
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Gibert P, Hill M, Pascual M, Plantamp C, Terblanche JS, Yassin A, Sgrò CM. Drosophila as models to understand the adaptive process during invasion. Biol Invasions 2016. [DOI: 10.1007/s10530-016-1087-4] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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35
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Niedziałkowska M, Hundertmark KJ, Jędrzejewska B, Sidorovich VE, Zalewska H, Veeroja R, Solberg EJ, Laaksonen S, Sand H, Solovyev VA, Sagaydak A, Tiainen J, Juškaitis R, Done G, Borodulin VA, Tulandin EA, Niedziałkowski K. The contemporary genetic pattern of European moose is shaped by postglacial recolonization, bottlenecks, and the geographical barrier of the Baltic Sea. Biol J Linn Soc Lond 2015. [DOI: 10.1111/bij.12713] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | - Kris J. Hundertmark
- Mammal Research Institute; Polish Academy of Sciences; Białowieża 17-230 Poland
- Institute of Arctic Biology and Department of Biology and Wildlife; University of Alaska; Fairbanks P.O. Box 757000 AK 99775-7000 USA
| | | | - Vadim E. Sidorovich
- Institute of Zoology; Scientific and Practical Centre for Biological Resources; National Academy of Sciences of Belarus; Minsk BY-220072 Republic of Belarus
| | - Hanna Zalewska
- Mammal Research Institute; Polish Academy of Sciences; Białowieża 17-230 Poland
| | - Rauno Veeroja
- Department of Zoology; Institute of Ecology and Earth Science; University of Tartu; Tartu 51014 Estonia
| | - Erling J. Solberg
- Norwegian Institute for Nature Research; P.O. Box 5685 Sluppen Trondheim NO-7485 Norway
| | | | - Håkan Sand
- Grimsö Research Station; Swedish University of Agricultural Sciences; 73091 Riddarhyttan Sweden
| | - Vyacheslav A. Solovyev
- Department of Animal Ecology; B. M. Zhitkov Russian Research Institute of Game Management and Fur Farming; Kirov 610000 Russia
| | - Andrey Sagaydak
- Mizhrichynskyi Regional Landscape Park; Otrokhy; Kozelets Raion Chernihiv Oblast, Ukraine
| | - Juha Tiainen
- Natural Resources Institute Finland; Helsinki 00790 Finland
| | - Rimvydas Juškaitis
- Institute of Ecology; Nature Research Centre; Vilnius LT-08412 Lithuania
| | - Gundega Done
- Latvian State Forest Research Institute ‘Silava’; Salaspils 2169 Latvia
| | - Vadim A. Borodulin
- Inter-regional Non-governmental Organization ‘Leningrad Association of Hunters and Fishermen’; Sankt Petersburg 190121 Russia
| | - Evgenii A. Tulandin
- Non-commercial Partnership ‘Union of Gamekeepers of the Kostroma Region’; Kostroma Russia
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36
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Poyet M, Le Roux V, Gibert P, Meirland A, Prévost G, Eslin P, Chabrerie O. The Wide Potential Trophic Niche of the Asiatic Fruit Fly Drosophila suzukii: The Key of Its Invasion Success in Temperate Europe? PLoS One 2015; 10:e0142785. [PMID: 26581101 PMCID: PMC4651357 DOI: 10.1371/journal.pone.0142785] [Citation(s) in RCA: 90] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2015] [Accepted: 10/27/2015] [Indexed: 11/19/2022] Open
Abstract
The Asiatic fruit fly Drosophila suzukii has recently invaded Europe and North and South America, causing severe damage to fruit production systems. Although agronomic host plants of that fly are now well documented, little is known about the suitability of wild and ornamental hosts in its exotic area. In order to study the potential trophic niche of D. suzukii with relation to fruit characteristics, fleshy fruits from 67 plant species were sampled in natural and anthropic ecosystems (forests, hedgerows, grasslands, coastal areas, gardens and urban areas) of the north of France and submitted to experimental infestations. A set of fruit traits (structure, colour, shape, skin texture, diameter and weight, phenology) potentially interacting with oviposition choices and development success of D. suzukii was measured. Almost half of the tested plant species belonging to 17 plant families allowed the full development of D. suzukii. This suggests that the extreme polyphagy of the fly and the very large reservoir of hosts producing fruits all year round ensure temporal continuity in resource availability and contribute to the persistence and the exceptional invasion success of D. suzukii in natural habitats and neighbouring cultivated systems. Nevertheless, this very plastic trophic niche is not systematically beneficial to the fly. Some of the tested plants attractive to D. suzukii gravid females stimulate oviposition but do not allow full larval development. Planted near sensitive crops, these "trap plants" may attract and lure D. suzukii, therefore contributing to the control of the invasive fly.
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Affiliation(s)
- Mathilde Poyet
- Unité Ecologie et Dynamiques des Systèmes Anthropisés (FRE-CNRS 3498), Université de Picardie Jules Verne, Amiens, France
- Laboratoire de Biométrie et Biologie Evolutive (UMR-CNRS 5558), Université Claude Bernard Lyon 1, Villeurbanne, France
| | - Vincent Le Roux
- Unité Ecologie et Dynamiques des Systèmes Anthropisés (FRE-CNRS 3498), Université de Picardie Jules Verne, Amiens, France
| | - Patricia Gibert
- Laboratoire de Biométrie et Biologie Evolutive (UMR-CNRS 5558), Université Claude Bernard Lyon 1, Villeurbanne, France
| | - Antoine Meirland
- Unité Ecologie et Dynamiques des Systèmes Anthropisés (FRE-CNRS 3498), Université de Picardie Jules Verne, Amiens, France
- Groupe d'étude des milieux estuariens et littoraux (GEMEL) Picardie, Maison de l’Université de Picardie Jules Verne, Saint Valery-Sur-Somme, France
| | - Geneviève Prévost
- Unité Ecologie et Dynamiques des Systèmes Anthropisés (FRE-CNRS 3498), Université de Picardie Jules Verne, Amiens, France
| | - Patrice Eslin
- Unité Ecologie et Dynamiques des Systèmes Anthropisés (FRE-CNRS 3498), Université de Picardie Jules Verne, Amiens, France
| | - Olivier Chabrerie
- Unité Ecologie et Dynamiques des Systèmes Anthropisés (FRE-CNRS 3498), Université de Picardie Jules Verne, Amiens, France
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37
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Jacquet S, Garros C, Lombaert E, Walton C, Restrepo J, Allene X, Baldet T, Cetre-Sossah C, Chaskopoulou A, Delecolle JC, Desvars A, Djerbal M, Fall M, Gardes L, de Garine-Wichatitsky M, Goffredo M, Gottlieb Y, Gueye Fall A, Kasina M, Labuschagne K, Lhor Y, Lucientes J, Martin T, Mathieu B, Miranda M, Pages N, Pereira da Fonseca I, Ramilo DW, Segard A, Setier-Rio ML, Stachurski F, Tabbabi A, Talla Seck M, Venter G, Zimba M, Balenghien T, Guis H, Chevillon C, Bouyer J, Huber K. Colonization of the Mediterranean basin by the vector biting midge speciesCulicoides imicola: an old story. Mol Ecol 2015; 24:5707-25. [DOI: 10.1111/mec.13422] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2015] [Revised: 10/06/2015] [Accepted: 10/09/2015] [Indexed: 11/27/2022]
Affiliation(s)
- S. Jacquet
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
- CNRS; UMR 5290 Maladies Infectieuses & Vecteurs-Ecologie, Génétique, Ecologie, Contrôle (MIVEGEC); Université de Montpellier; Montpellier France
- IRD; UR 224 MIVEGEC; BP 64501, Agropolis 34394 Montpellier Cedex 5 France
| | - C. Garros
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
| | - E. Lombaert
- INRA; UMR1355; Institut Sophia Agrobiotech; 06903 Sophia Antipolis France
| | - C. Walton
- Computational and Evolutionary Biology; Faculty of Life Sciences; University of Manchester; Manchester UK
| | - J. Restrepo
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
| | - X. Allene
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
| | - T. Baldet
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
| | - C. Cetre-Sossah
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
- Plateforme de recherche CYROI; CRVOI; Sainte Clotilde La Réunion France
| | - A. Chaskopoulou
- USDA-ARS European Biological Control Laboratory; 54623 Thessaloniki Greece
| | - J.-C. Delecolle
- Medicine Faculty; Institute of Parasitology and Tropical Pathology (IPPTS); EA7292 67000 Strasbourg France
| | - A. Desvars
- Department of Clinical Microbiology; Umea University; Umea Sweden
| | - M. Djerbal
- Regional Veterinary Laboratory of Draa-Ben-Kheda; Tizi-Ouzou Algeria
| | - M. Fall
- ISRA-LNERV; BP 2057 Dakar Senegal
| | - L. Gardes
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
| | - M. de Garine-Wichatitsky
- Cirad; UPR AGIRs, RP-PCP; Harare Zimbabwe
- Cirad; UPR AGIRs; Montpellier France
- Department of Biological Sciences, Entomology; University of Zimbabwe; PO Box MP 167 Mount Pleasant Harare Zimbabwe
| | - M. Goffredo
- Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise ‘G. Caporale’; 64100 Teramo Italy
| | - Y. Gottlieb
- Koret School of Veterinary Medicine; The Robert H. Smith Faculty of Agriculture, Food and Environment; The Hebrew University of Jerusalem; Rehovot Israel
| | | | - M. Kasina
- Kenya Agricultural and Livestock Research Organization Sericulture; PO Box 7816 Code 01000 Thika Kenya
| | - K. Labuschagne
- Agricultural Research Council-Onderstepoort Veterinary Institute, Parasites, Vectors and Vector-borne Diseases; Onderstepoort 0110 South Africa
| | - Y. Lhor
- Office National de Sécurité Sanitaire des produits Alimentaires (ONSSA); Rabat Morocco
| | - J. Lucientes
- Departamento de Patología Animal; Facultad de Veterinaria; Universidad de Zaragoza; Zaragoza Spain
| | - T. Martin
- UR Hortsys; Cirad; Montpellier France
- Plant Health Department; ICIPE; Nairobi Kenya
| | - B. Mathieu
- Medicine Faculty; Institute of Parasitology and Tropical Pathology (IPPTS); EA7292 67000 Strasbourg France
- EID Méditerranée; 34184 Montpellier France
| | - M. Miranda
- Laboratory of Zoology; University of Balearics (UIB); Palma de Mallorca Spain
| | - N. Pages
- INRA UMR1309 CMAEE; 34398 Montpellier France
- Centre de Recerca en Sanitat Animal (CReSA); UAB-IRTA; Campus de la Universitat Autònoma de Barcelona 08193 Bellaterra (Cerdanyola del Vallès) Spain
- CIRAD; UMR CMAEE; 97170 Petit Bourg Guadeloupe France
| | | | - D. W. Ramilo
- Faculdade de Medicina Veterinária; CIISA; ULisboa; 1300-477 Lisboa Portugal
| | - A. Segard
- CNRS; UMR 5175 CEFE; Université de Montpellier; Montpellier France
- EPHE Campus CNRS; 1919 route de Mende 34293 Montpellier Cedex 5 France
| | | | - F. Stachurski
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
| | - A. Tabbabi
- Lab of Medical Parasitology, Biotechnologies & Biomolecules (LR 11 IPT 06); Pasteur Institute of Tunis; Tunis Tunisia
| | | | - G. Venter
- Agricultural Research Council-Onderstepoort Veterinary Institute, Parasites, Vectors and Vector-borne Diseases; Onderstepoort 0110 South Africa
| | - M. Zimba
- Department of Biological Sciences, Entomology; University of Zimbabwe; PO Box MP 167 Mount Pleasant Harare Zimbabwe
| | - T. Balenghien
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
| | - H. Guis
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
| | - C. Chevillon
- CNRS; UMR 5290 Maladies Infectieuses & Vecteurs-Ecologie, Génétique, Ecologie, Contrôle (MIVEGEC); Université de Montpellier; Montpellier France
- IRD; UR 224 MIVEGEC; BP 64501, Agropolis 34394 Montpellier Cedex 5 France
| | - J. Bouyer
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
- ISRA-LNERV; BP 2057 Dakar Senegal
| | - K. Huber
- CIRAD UMR15 CMAEE; 34398 Montpellier France
- INRA UMR1309 CMAEE; 34398 Montpellier France
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38
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Simões P, Fragata I, Lopes-Cunha M, Lima M, Kellen B, Bárbaro M, Santos M, Matos M. Wing trait-inversion associations in Drosophila subobscura can be generalized within continents, but may change through time. J Evol Biol 2015; 28:2163-74. [PMID: 26302686 DOI: 10.1111/jeb.12739] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2015] [Revised: 07/28/2015] [Accepted: 08/18/2015] [Indexed: 01/14/2023]
Abstract
Clinal variation is one of the most emblematic examples of the action of natural selection at a wide geographical range. In Drosophila subobscura, parallel clines in body size and inversions, but not in wing shape, were found in Europe and South and North America. Previous work has shown that a bottleneck effect might be largely responsible for differences in wing trait-inversion association between one European and one South American population. One question still unaddressed is whether the associations found before are present across other populations of the European and South American clines. Another open question is whether evolutionary dynamics in a new environment can lead to relevant changes in wing traits-inversion association. To analyse geographical variation in these associations, we characterized three recently laboratory founded D. subobscura populations from both the European and South American latitudinal clines. To address temporal variation, we also characterized the association at a later generation in the European populations. We found that wing size and shape associations can be generalized across populations of the same continent, but may change through time for wing size. The observed temporal changes are probably due to changes in the genetic content of inversions, derived from adaptation to the new, laboratory environment. Finally, we show that it is not possible to predict clinal variation from intrapopulation associations. All in all this suggests that, at least in the present, wing traits-inversion associations are not responsible for the maintenance of the latitudinal clines in wing shape and size.
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Affiliation(s)
- P Simões
- cE3c - Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal
| | - I Fragata
- cE3c - Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal
| | - M Lopes-Cunha
- cE3c - Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal
| | - M Lima
- cE3c - Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal
| | - B Kellen
- cE3c - Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal
| | - M Bárbaro
- cE3c - Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal
| | - M Santos
- Departament de Genètica i de Microbiologia, Grup de Genòmica, Bioinformàtica i Biologia Evolutiva (GGBE), Universitat Autonòma de Barcelona, Bellaterra (Barcelona), Spain
| | - M Matos
- cE3c - Centre for Ecology, Evolution and Environmental Changes, Faculdade de Ciências, Universidade de Lisboa, Lisbon, Portugal
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39
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Lemic D, Mikac KM, Ivkosic SA, Bažok R. The Temporal and Spatial Invasion Genetics of the Western Corn Rootworm (Coleoptera: Chrysomelidae) in Southern Europe. PLoS One 2015; 10:e0138796. [PMID: 26406466 PMCID: PMC4583188 DOI: 10.1371/journal.pone.0138796] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2015] [Accepted: 09/03/2015] [Indexed: 11/29/2022] Open
Abstract
This study describes the genetics of the western corn rootworm (WCR), Diabrotica virgifera virgifera LeConte in southern Europe during the introduction (1996–2001) and establishment/spread (2002–2011) phases of its invasion. The Diabrotica microsatellite core-set was used to perform traditional population genetics analyses. Our results indicated that during the introduction phase genetic diversity and population genetic structure were lower overall as compared to the establishment/spread phase. Unusually high genetic differentiation was found between the Italy and southern Europe comparisons, including high differentiation between Italian populations separated by a short distance during the establishment/spread phase. STRUCTURE analysis revealed two genetic clusters during the introduction phase and two genetic clusters during the establishment/spread phase. However, bottlenecked populations were only detected during the invasion phase. A small but significant isolation by distance effect was noted in both phases. Serbia was the geographic source of WCR to Croatia and Hungary in the introduction phase, while the United States of America was the possible source of WCR to Italy in 2001. These introductory populations were the subsequent source of individuals sampled during the establishment/spread phase. Repeated introductions and admixture events in southern Europe may have resulted in genetically diverse WCR populations that have attained 83% of all known alleles worldwide.
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Affiliation(s)
- Darija Lemic
- Department for Agricultural Zoology, University of Zagreb, Faculty of Agriculture, Zagreb, Croatia
- * E-mail:
| | - Katarina M. Mikac
- Centre for Sustainable Ecosystem Solutions, University of Wollongong, Wollongong, New South Wales, Australia
| | - Stephanie A. Ivkosic
- Centre for Sustainable Ecosystem Solutions, University of Wollongong, Wollongong, New South Wales, Australia
| | - Renata Bažok
- Department for Agricultural Zoology, University of Zagreb, Faculty of Agriculture, Zagreb, Croatia
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40
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Reconstructing the invasion history of the lily leaf beetle, Lilioceris lilii, in North America. Biol Invasions 2015. [DOI: 10.1007/s10530-015-0987-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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41
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Benazzo A, Ghirotto S, Vilaça ST, Hoban S. Using ABC and microsatellite data to detect multiple introductions of invasive species from a single source. Heredity (Edinb) 2015; 115:262-72. [PMID: 25920671 DOI: 10.1038/hdy.2015.38] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2014] [Revised: 03/12/2015] [Accepted: 03/14/2015] [Indexed: 11/09/2022] Open
Abstract
The introduction of invasive species to new locations (that is, biological invasions) can have major impact on biodiversity, agriculture and public health. As such, determining the routes and modality of introductions with genetic data has become a fundamental goal in molecular ecology. To assist with this goal, new statistical methods and frameworks have been developed, such as approximate Bayesian computation (ABC) for inferring invasion history. Here, we present a model of invasion accounting for multiple introductions from a single source (MISS), a heretofore largely unexplored model. We simulate microsatellite data to evaluate the power of ABC to distinguish between single and multiple introductions from the same source, under a range of demographic parameters. We also apply ABC to microsatellite data from three invasions of bumblebee in New Zealand. In addition, we assess the performance of several methods of summary statistics selection. Our simulated results suggested good ability to distinguish between one- and two-wave models over much but not all of the parameter space tested, independent of summary statistics used. Globally, parameter estimation was good except for bottleneck timing. For one of the bumblebee species, we clearly rejected the MISS model, while for the other two we found inconclusive results. Since a second wave may provide genetic reinforcement to initial colonists, help relieve inbreeding among founders, or increase the hazard of the invasion, its detection may be crucial for managing invasions; we suggest that the MISS model could be considered as a potential model in future theoretical and empirical studies of invasions.
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Affiliation(s)
- A Benazzo
- Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy
| | - S Ghirotto
- Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy
| | - S T Vilaça
- Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy
| | - S Hoban
- 1] Department of Life Sciences and Biotechnology, University of Ferrara, Ferrara, Italy [2] National Institute for Mathematical and Biological Synthesis (NIMBioS), University of Tennessee, Knoxville, TN, USA
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42
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Dlugosch KM, Anderson SR, Braasch J, Cang FA, Gillette HD. The devil is in the details: genetic variation in introduced populations and its contributions to invasion. Mol Ecol 2015; 24:2095-111. [PMID: 25846825 DOI: 10.1111/mec.13183] [Citation(s) in RCA: 176] [Impact Index Per Article: 19.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2015] [Revised: 03/26/2015] [Accepted: 03/27/2015] [Indexed: 12/14/2022]
Abstract
The influence of genetic variation on invasion success has captivated researchers since the start of the field of invasion genetics 50 years ago. We review the history of work on this question and conclude that genetic variation-as surveyed with molecular markers-appears to shape invasion rarely. Instead, there is a significant disconnect between marker assays and ecologically relevant genetic variation in introductions. We argue that the potential for adaptation to facilitate invasion will be shaped by the details of genotypes affecting phenotypes, and we highlight three areas in which we see opportunities to make powerful new insights. (i) The genetic architecture of adaptive variation. Traits shaped by large-effect alleles may be strongly impacted by founder events yet more likely to respond to selection when genetic drift is strong. Large-effect loci may be especially relevant for traits involved in biotic interactions. (ii) Cryptic genetic variation exposed during invasion. Introductions have strong potential to uncover masked variation due to alterations in genetic and ecological environments. (iii) Genetic interactions during admixture of multiple source populations. As divergence among sources increases, positive followed by increasingly negative effects of admixture should be expected. Although generally hypothesized to be beneficial during invasion, admixture is most often reported among sources of intermediate divergence, supporting the possibility that incompatibilities among divergent source populations might be limiting their introgression. Finally, we note that these details of invasion genetics can be coupled with comparative demographic analyses to link genetic changes to the evolution of invasiveness itself.
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Affiliation(s)
- Katrina M Dlugosch
- Department of Ecology & Evolutionary Biology, University of Arizona, PO Box 210088, Tucson, AZ, 85721, USA
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43
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Karsten M, Jansen van Vuuren B, Addison P, Terblanche JS. Deconstructing intercontinental invasion pathway hypotheses of the Mediterranean fruit fly (Ceratitis capitata) using a Bayesian inference approach: are port interceptions and quarantine protocols successfully preventing new invasions? DIVERS DISTRIB 2015. [DOI: 10.1111/ddi.12333] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Affiliation(s)
- Minette Karsten
- Department of Conservation Ecology and Entomology; Stellenbosch University; Stellenbosch South Africa
| | - Bettine Jansen van Vuuren
- Centre for Invasion Biology; Department of Zoology; University of Johannesburg; Johannesburg South Africa
| | - Pia Addison
- Department of Conservation Ecology and Entomology; Stellenbosch University; Stellenbosch South Africa
| | - John S. Terblanche
- Centre for Invasion Biology; Department of Conservation Ecology and Entomology; Stellenbosch University; Stellenbosch South Africa
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44
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Pratdesaba R, Segarra C, Aguadé M. Inferring the demographic history of Drosophila subobscura from nucleotide variation at regions not affected by chromosomal inversions. Mol Ecol 2015; 24:1729-41. [PMID: 25776124 DOI: 10.1111/mec.13155] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2014] [Revised: 03/09/2015] [Accepted: 03/11/2015] [Indexed: 11/29/2022]
Abstract
Drosophila subobscura presents a rich and complex chromosomal inversion polymorphism. It can thus be considered a model system (i) to study the mechanisms originating inversions and how inversions affect the levels and patterns of variation in the inverted regions and (ii) to study adaptation at both the single-gene and chromosomal inversion levels. It is therefore important to infer its demographic history as previous information indicated that its nucleotide variation is not at mutation-drift equilibrium. For that purpose, we sequenced 16 noncoding regions distributed across those parts of the J chromosome not affected by inversions in the studied population and possibly either by other selective events. The pattern of variation detected in these 16 regions is similar to that previously reported within different chromosomal arrangements, suggesting that the latter results would, thus, mainly reflect recent demographic events rather than the partial selective sweep imposed by the origin and frequency increase of inversions. Among the simple demographic models considered in our Approximate Bayesian Computation analysis of variation at the 16 regions, the model best supported by the data implies a population size expansion soon after the penultimate glacial period. This model constitutes a better null model, and it is therefore an important resource for subsequent studies aiming among others to uncover selective events across the species genome. Our results also highlight the importance of introducing the possibility of multiple hits in the coalescent simulations with an outgroup.
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Affiliation(s)
- Roser Pratdesaba
- Departament de Genètica, Facultat de Biologia and Institut de Recerca de la Biodiversitat (IRBio), Universitat de Barcelona, Diagonal 643, 08028, Barcelona, Spain
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45
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Gilchrist GW, Jeffers LM, West B, Folk DG, Suess J, Huey RB. Clinal patterns of desiccation and starvation resistance in ancestral and invading populations of Drosophila subobscura. Evol Appl 2015; 1:513-23. [PMID: 25567732 PMCID: PMC3352378 DOI: 10.1111/j.1752-4571.2008.00040.x] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2008] [Accepted: 05/22/2008] [Indexed: 11/29/2022] Open
Abstract
As invading species expand, they eventually encounter physical and biotic stressors that limit their spread. We examine latitudinal and climatic variation in physiological tolerance in one native and two invading populations of Drosophila subobscura. These flies are native to the Palearctic region, but invaded both South and North America around 1980 and spread rapidly across 15° of latitude on each continent. Invading flies rapidly evolved latitudinal clines in chromosome inversion frequencies and in wing size that parallel those of native populations in the Old World. Here we investigate whether flies on all three continents have evolved parallel clines in desiccation and starvation tolerance, such that flies in low-latitude regions (hot, dry) might have increased stress resistance. Starvation tolerance does not vary with latitude or climate on any continent. In contrast, desiccation tolerance varies clinally with latitude on all three continents, although not in parallel. In North American and Europe, desiccation tolerance is inversely related to latitude, as expected. But in South America, desiccation tolerance increases with latitude and is greatest in relatively cool and wet areas. Differences among continents in latitudinal patterns of interspecific-competition potentially influence clinal selection for physiological resistance, but no simple pattern is evident on these continents.
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Affiliation(s)
- George W Gilchrist
- Department of Biology, The College of William and Mary Williamsburg, VA, USA
| | | | - Brianna West
- Department of Biology, The College of William and Mary Williamsburg, VA, USA ; Piedmont Environmental Council Warrenton, VA, USA
| | - Donna G Folk
- Department of Biology, The College of William and Mary Williamsburg, VA, USA ; Department of Biology, University of San Diego San Diego, CA, USA
| | - Jeremy Suess
- Department of Biology, University of Washington Seattle, WA, USA ; Vanson HaloSource, Inc Redmond, WA, USA
| | - Raymond B Huey
- Department of Biology, University of Washington Seattle, WA, USA
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46
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Ferchaud AL, Eudeline R, Arnal V, Cheylan M, Pottier G, Leblois R, Crochet PA. Congruent signals of population history but radically different patterns of genetic diversity between mitochondrial and nuclear markers in a mountain lizard. Mol Ecol 2014; 24:192-207. [PMID: 25410208 DOI: 10.1111/mec.13011] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2014] [Revised: 11/05/2014] [Accepted: 11/14/2014] [Indexed: 10/24/2022]
Abstract
Historical factors, current population size, population connectivity and selective processes at linked loci contribute to shaping contemporary patterns of neutral genetic diversity. It is now widely acknowledged that nuclear and mitochondrial markers react differently to current demography as well as to past history, so the use of both types of markers is often advocated to gain insight on both historical and contemporary processes. We used 12 microsatellite loci genotyped in 13 populations of a mountain lizard (Iberolacerta bonnali) to test whether the historical scenario favoured by a previous mitochondrial study was also supported by nuclear markers and thereby evaluated the consequences of postglacial range movements on nuclear diversity. Congruent signals of recent history were revealed by nuclear and mitochondrial markers using an Approximate Bayesian computation approach, but contemporary patterns of mtDNA and nuclear DNA diversity were radically different. Although dispersal in this species is probably highly restricted at all spatial scales, colonization abilities have been historically good, suggesting capability for reestablishment of locally extinct populations except in fully disconnected habitats.
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Affiliation(s)
- Anne-Laure Ferchaud
- Department of Bioscience, Aarhus University, Ny Munkegade 114, DK-8000, Aarhus C, Denmark; EPHE-UMR5175 CEFE, Centre d'Écologie Fonctionnelle et Évolutive, 1919 route de Mende, 34293, Montpellier Cedex 5, France
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47
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Lombaert E, Guillemaud T, Lundgren J, Koch R, Facon B, Grez A, Loomans A, Malausa T, Nedved O, Rhule E, Staverlokk A, Steenberg T, Estoup A. Complementarity of statistical treatments to reconstruct worldwide routes of invasion: the case of the Asian ladybirdHarmonia axyridis. Mol Ecol 2014; 23:5979-97. [DOI: 10.1111/mec.12989] [Citation(s) in RCA: 93] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2014] [Revised: 10/18/2014] [Accepted: 10/28/2014] [Indexed: 11/28/2022]
Affiliation(s)
- Eric Lombaert
- Inra; UMR 1355 ISA; Sophia-Antipolis 06903 France
- Université de Nice Sophia Antipolis; UMR ISA; Sophia-Antipolis 06903 France
- CNRS; UMR 7254 ISA; Sophia-Antipolis 06903 France
| | - Thomas Guillemaud
- Inra; UMR 1355 ISA; Sophia-Antipolis 06903 France
- Université de Nice Sophia Antipolis; UMR ISA; Sophia-Antipolis 06903 France
- CNRS; UMR 7254 ISA; Sophia-Antipolis 06903 France
| | - Jonathan Lundgren
- USDA-ARS; North Central Agricultural Research Laboratory; Brookings SD 57006 USA
| | - Robert Koch
- Department of Entomology; University of Minnesota; Saint Paul MN 55108 USA
| | - Benoît Facon
- Inra; UMR CBGP (INRA/IRD/CIRAD/Montpellier SupAgro); Montferrier-sur-Lez 34988 France
| | - Audrey Grez
- Facultad de Ciencias Veterinarias y Pecuarias; Universidad de Chile; Casilla 2, Correo 15 La Granja Santiago Chile
| | - Antoon Loomans
- National Reference Centre; Netherlands Food and Consumer Product Safety Authority; Wageningen 6706 EA The Netherlands
| | - Thibaut Malausa
- Inra; UMR 1355 ISA; Sophia-Antipolis 06903 France
- Université de Nice Sophia Antipolis; UMR ISA; Sophia-Antipolis 06903 France
- CNRS; UMR 7254 ISA; Sophia-Antipolis 06903 France
| | - Oldrich Nedved
- University of South Bohemia; Ceske Budejovice 37005 Czech Republic
| | - Emma Rhule
- Department of Genetics; University of Cambridge; Cambridge CB2 3EH UK
| | - Arnstein Staverlokk
- Department of Terrestrial Ecology; Norwegian Institute for Nature Research; Trondheim NO-7485 Norway
| | - Tove Steenberg
- Department of Agroecology; Aarhus University; Slagelse DK-4200 Denmark
| | - Arnaud Estoup
- Inra; UMR CBGP (INRA/IRD/CIRAD/Montpellier SupAgro); Montferrier-sur-Lez 34988 France
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48
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Adrion JR, Kousathanas A, Pascual M, Burrack HJ, Haddad NM, Bergland AO, Machado H, Sackton TB, Schlenke TA, Watada M, Wegmann D, Singh ND. Drosophila suzukii: the genetic footprint of a recent, worldwide invasion. Mol Biol Evol 2014; 31:3148-63. [PMID: 25158796 PMCID: PMC4245814 DOI: 10.1093/molbev/msu246] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
Native to Asia, the soft-skinned fruit pest Drosophila suzukii has recently invaded the United States and Europe. The eastern United States represents the most recent expansion of their range, and presents an opportunity to test alternative models of colonization history. Here, we investigate the genetic population structure of this invasive fruit fly, with a focus on the eastern United States. We sequenced six X-linked gene fragments from 246 individuals collected from a total of 12 populations. We examine patterns of genetic diversity within and between populations and explore alternative colonization scenarios using approximate Bayesian computation. Our results indicate high levels of nucleotide diversity in this species and suggest that the recent invasions of Europe and the continental United States are independent demographic events. More broadly speaking, our results highlight the importance of integrating population structure into demographic models, particularly when attempting to reconstruct invasion histories. Finally, our simulation results illustrate the general challenge in reconstructing invasion histories using genetic data and suggest that genome-level data are often required to distinguish among alternative demographic scenarios.
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Affiliation(s)
| | - Athanasios Kousathanas
- Department of Biology, University of Fribourg, Fribourg, Switzerland,Swiss Institute of Bioinformatics, Lausanne, Switzerland
| | - Marta Pascual
- Department of Genetics and IRBio, University of Barcelona, Barcelona, Spain
| | | | - Nick M. Haddad
- Department of Biological Sciences, North Carolina State University
| | | | | | | | | | | | - Daniel Wegmann
- Department of Biology, University of Fribourg, Fribourg, Switzerland,Swiss Institute of Bioinformatics, Lausanne, Switzerland
| | - Nadia D. Singh
- Department of Biological Sciences, North Carolina State University,*Corresponding author: E-mail:
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49
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Seabra SG, Brás PG, Martins J, Martins R, Wyatt N, Shirazi J, Rebelo MT, Franco JC, Mateus C, Figueiredo E, Paulo OS. Phylogeographical patterns inCoenosia attenuata(Diptera: Muscidae): a widespread predator of insect species associated with greenhouse crops. Biol J Linn Soc Lond 2014. [DOI: 10.1111/bij.12419] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sofia G. Seabra
- Centre for Ecology, Evolution and Environmental Changes; Departamento de Biologia Animal; Faculdade de Ciências; Universidade de Lisboa; 1749-016 Lisboa Portugal
| | - Patrícia G. Brás
- Centre for Ecology, Evolution and Environmental Changes; Departamento de Biologia Animal; Faculdade de Ciências; Universidade de Lisboa; 1749-016 Lisboa Portugal
| | - Joana Martins
- Centro de Engenharia dos Biossistemas; Instituto Superior de Agronomia; Universidade de Lisboa; Tapada da Ajuda 1349-017 Lisboa Portugal
| | - Renata Martins
- Centre for Ecology, Evolution and Environmental Changes; Departamento de Biologia Animal; Faculdade de Ciências; Universidade de Lisboa; 1749-016 Lisboa Portugal
| | - Nigel Wyatt
- Natural History Museum; Cromwell Road London SW7 5BD UK
| | - Jalal Shirazi
- Biocontrol Research Department; Iranian Research Institute of Plant Protection (IRIPP); PO Box 1454 Tehran 19395 Iran
| | - Maria Teresa Rebelo
- Centro de Estudos do Ambiente e do Mar (CESAM); Departamento de Biologia Animal; Faculdade de Ciências; Universidade de Lisboa; 1749-016 Lisboa Portugal
| | - José Carlos Franco
- Centro de Estudos Florestais; Instituto Superior de Agronomia; Universidade de Lisboa; Tapada da Ajuda 1349-017 Lisboa Portugal
| | - Célia Mateus
- Instituto Nacional de Investigação Agrária e Veterinária; Av. República Quinta do Marquês 2784-505 Oeiras Portugal
| | - Elisabete Figueiredo
- Centro de Engenharia dos Biossistemas; Instituto Superior de Agronomia; Universidade de Lisboa; Tapada da Ajuda 1349-017 Lisboa Portugal
| | - Octávio S. Paulo
- Centre for Ecology, Evolution and Environmental Changes; Departamento de Biologia Animal; Faculdade de Ciências; Universidade de Lisboa; 1749-016 Lisboa Portugal
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50
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Mallez S, Castagnone C, Espada M, Vieira P, Eisenback JD, Harrell M, Mota M, Aikawa T, Akiba M, Kosaka H, Castagnone-Sereno P, Guillemaud T. Worldwide invasion routes of the pinewood nematode: What can we infer from population genetics analyses? Biol Invasions 2014. [DOI: 10.1007/s10530-014-0788-9] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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